Publications of Gregory A. Wray

Books

  1. Ettensohn, C.A., G. M. Wessell, and G. A. Wray (eds.), Development of Sea Urchins, Ascidians, and Other Invertebrate Deuterostomes: Experimental Approaches (2004), Academic Press, San Diego CA

Papers Published

  1. Edsall, LE; Berrio, A; Majoros, WH; Swain-Lenz, D; Morrow, S; Shibata, Y; Safi, A; Wray, GA; Crawford, GE; Allen, AS, Evaluating Chromatin Accessibility Differences Across Multiple Primate Species Using a Joint Modeling Approach., Genome Biology and Evolution, vol. 11 no. 10 (October, 2019), pp. 3035-3053
  2. Davidson, PL; Thompson, JW; Foster, MW; Moseley, MA; Byrne, M; Wray, GA, A comparative analysis of egg provisioning using mass spectrometry during rapid life history evolution in sea urchins., Evol Dev, vol. 21 no. 4 (July, 2019), pp. 188-204
  3. Swain-Lenz, D; Berrio, A; Safi, A; Crawford, GE; Wray, GA, Comparative Analyses of Chromatin Landscape in White Adipose Tissue Suggest Humans May Have Less Beigeing Potential than Other Primates., Genome Biology and Evolution, vol. 11 no. 7 (July, 2019), pp. 1997-2008
  4. Wray, GA; Haag, ES, Rudolf A. Raff (1941-2019)., Nature Ecology and Evolution, vol. 3 no. 4 (April, 2019), pp. 518-519
  5. Oulhen, N; Foster, S; Wray, G; Wessel, G, Identifying gene expression from single cells to single genes., Methods in Cell Biology, vol. 151 (January, 2019), pp. 127-158, Elsevier
  6. Li, M; Santpere, G; Imamura Kawasawa, Y; Evgrafov, OV; Gulden, FO; Pochareddy, S; Sunkin, SM; Li, Z; Shin, Y; Zhu, Y; Sousa, AMM; Werling, DM; Kitchen, RR; Kang, HJ; Pletikos, M; Choi, J; Muchnik, S; Xu, X; Wang, D; Lorente-Galdos, B; Liu, S; Giusti-Rodríguez, P; Won, H; de Leeuw, CA; Pardiñas, AF; BrainSpan Consortium, ; PsychENCODE Consortium, ; PsychENCODE Developmental Subgroup, ; Hu, M; Jin, F; Li, Y; Owen, MJ; O'Donovan, MC; Walters, JTR; Posthuma, D; Reimers, MA; Levitt, P; Weinberger, DR; Hyde, TM; Kleinman, JE; Geschwind, DH; Hawrylycz, MJ; State, MW; Sanders, SJ; Sullivan, PF; Gerstein, MB; Lein, ES; Knowles, JA; Sestan, N, Integrative functional genomic analysis of human brain development and neuropsychiatric risks., Science (New York, N.Y.), vol. 362 no. 6420 (December, 2018)
  7. Eisthen, HL; Halanych, KM; Kelley, DB; White, SA; Phelps, SM; 66 additional authors,, New NSF policy will stifle innovation., Science (New York, N.Y.), vol. 362 no. 6412 (October, 2018), pp. 297-298, AMER ASSOC ADVANCEMENT SCIENCE
  8. Bryois, J; Garrett, ME; Song, L; Safi, A; Giusti-Rodriguez, P; Johnson, GD; Shieh, AW; Buil, A; Fullard, JF; Roussos, P; Sklar, P; Akbarian, S; Haroutunian, V; Stockmeier, CA; Wray, GA; White, KP; Liu, C; Reddy, TE; Ashley-Koch, A; Sullivan, PF; Crawford, GE, Evaluation of chromatin accessibility in prefrontal cortex of individuals with schizophrenia., Nature Communications, vol. 9 no. 1 (August, 2018), pp. 3121
  9. Pizzollo, J; Nielsen, WJ; Shibata, Y; Safi, A; Crawford, GE; Wray, GA; Babbitt, CC, Comparative Serum Challenges Show Divergent Patterns of Gene Expression and Open Chromatin in Human and Chimpanzee., Genome Biology and Evolution, vol. 10 no. 3 (March, 2018), pp. 826-839
  10. Byrne, M; Koop, D; Morris, VB; Chui, J; Wray, GA; Cisternas, P, Expression of genes and proteins of the pax-six-eya-dach network in the metamorphic sea urchin: Insights into development of the enigmatic echinoderm body plan and sensory structures., Developmental Dynamics : an Official Publication of the American Association of Anatomists, vol. 247 no. 1 (January, 2018), pp. 239-249
  11. Singh, A; Pinto, L; Martin, C; Rutherford, N; Ragunathan, A; Upadhyay, U; Kapoor, P; McRae, M; Siddiqui, A; Cantelmi, D; Heyland, A; Wray, G; Stone, JR, Rudiment resorption as a response to starvation during larval development in the sea urchin Strongylocentrotus droebachiensis, Canadian Journal of Zoology, vol. 96 no. 10 (January, 2018), pp. 1178-1185
  12. Linchangco, GV; Foltz, DW; Reid, R; Williams, J; Nodzak, C; Kerr, AM; Miller, AK; Hunter, R; Wilson, NG; Nielsen, WJ; Mah, CL; Rouse, GW; Wray, GA; Janies, DA, The phylogeny of extant starfish (Asteroidea: Echinodermata) including Xyloplax, based on comparative transcriptomics., Molecular Phylogenetics and Evolution, vol. 115 (October, 2017), pp. 161-170
  13. Babbitt, CC; Haygood, R; Nielsen, WJ; Wray, GA, Gene expression and adaptive noncoding changes during human evolution., Bmc Genomics, vol. 18 no. 1 (June, 2017), pp. 435
  14. Koop, D; Cisternas, P; Morris, VB; Strbenac, D; Yang, JYH; Wray, GA; Byrne, M, Nodal and BMP expression during the transition to pentamery in the sea urchin Heliocidaris erythrogramma: insights into patterning the enigmatic echinoderm body plan., Bmc Developmental Biology, vol. 17 no. 1 (February, 2017), pp. 4
  15. Runcie, DE; Dorey, N; Garfield, DA; Stumpp, M; Dupont, S; Wray, GA, Genomic Characterization of the Evolutionary Potential of the Sea Urchin Strongylocentrotus droebachiensis Facing Ocean Acidification., Genome Biology and Evolution, vol. 8 no. 12 (December, 2016), pp. 3672-3684
  16. Israel, JW; Martik, ML; Byrne, M; Raff, EC; Raff, RA; McClay, DR; Wray, GA, Comparative Developmental Transcriptomics Reveals Rewiring of a Highly Conserved Gene Regulatory Network during a Major Life History Switch in the Sea Urchin Genus Heliocidaris., Plos Biology, vol. 14 no. 3 (March, 2016), pp. e1002391
  17. Schierwater, B; Holland, PWH; Miller, DJ; Stadler, PF; Wiegmann, BM; Wörheide, G; Wray, GA; DeSalle, R, Never ending analysis of a century old evolutionary debate: "Unringing" the urmetazoon bell, Frontiers in Ecology and Evolution, vol. 4 no. FEB (February, 2016)
  18. Janies, DA; Witter, Z; Linchangco, GV; Foltz, DW; Miller, AK; Kerr, AM; Jay, J; Reid, RW; Wray, GA, EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms., Bmc Bioinformatics, vol. 17 (January, 2016), pp. 48
  19. Dutta, V; Altermann, E; Olson, J; Wray, GA; Siletzky, RM; Kathariou, S, Whole-Genome Sequences of Agricultural, Host-Associated Campylobacter coli and Campylobacter jejuni Strains., Genome Announcements, vol. 4 no. 4 (January, 2016)
  20. Byrne, M; Koop, D; Cisternas, P; Strbenac, D; Yang, JYH; Wray, GA, Transcriptomic analysis of Nodal- and BMP-associated genes during juvenile development of the sea urchin Heliocidaris erythrogramma., Marine Genomics, vol. 24 Pt 1 (December, 2015), pp. 41-45, ISSN 1874-7787
  21. PsychENCODE Consortium, ; Akbarian, S; Liu, C; Knowles, JA; Vaccarino, FM; Farnham, PJ; Crawford, GE; Jaffe, AE; Pinto, D; Dracheva, S; Geschwind, DH; Mill, J; Nairn, AC; Abyzov, A; Pochareddy, S; Prabhakar, S; Weissman, S; Sullivan, PF; State, MW; Weng, Z; Peters, MA; White, KP; Gerstein, MB; Amiri, A; Armoskus, C; Ashley-Koch, AE; Bae, T; Beckel-Mitchener, A; Berman, BP; Coetzee, GA; Coppola, G; Francoeur, N; Fromer, M; Gao, R; Grennan, K; Herstein, J; Kavanagh, DH; Ivanov, NA; Jiang, Y; Kitchen, RR; Kozlenkov, A; Kundakovic, M; Li, M; Li, Z; Liu, S; Mangravite, LM; Mattei, E; Markenscoff-Papadimitriou, E; Navarro, FCP; North, N; Omberg, L; Panchision, D; Parikshak, N; Poschmann, J; Price, AJ; Purcaro, M; Reddy, TE; Roussos, P; Schreiner, S; Scuderi, S; Sebra, R; Shibata, M; Shieh, AW; Skarica, M; Sun, W; Swarup, V; Thomas, A; Tsuji, J; van Bakel, H; Wang, D; Wang, Y; Wang, K; Werling, DM; Willsey, AJ; Witt, H; Won, H; Wong, CCY; Wray, GA; Wu, EY; Xu, X; Yao, L; Senthil, G; Lehner, T; Sklar, P; Sestan, N, The PsychENCODE project., Nat Neurosci, vol. 18 no. 12 (December, 2015), pp. 1707-1712
  22. Wray, GA, Molecular clocks and the early evolution of metazoan nervous systems., Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol. 370 no. 1684 (December, 2015)
  23. Bauernfeind, AL; Reyzer, ML; Caprioli, RM; Ely, JJ; Babbitt, CC; Wray, GA; Hof, PR; Sherwood, CC, High spatial resolution proteomic comparison of the brain in humans and chimpanzees., The Journal of Comparative Neurology, vol. 523 no. 14 (October, 2015), pp. 2043-2061, ISSN 0021-9967
  24. Bauernfeind, AL; Soderblom, EJ; Turner, ME; Moseley, MA; Ely, JJ; Hof, PR; Sherwood, CC; Wray, GA; Babbitt, CC, Evolutionary Divergence of Gene and Protein Expression in the Brains of Humans and Chimpanzees., Genome Biology and Evolution, vol. 7 no. 8 (July, 2015), pp. 2276-2288
  25. Muntané, G; Horvath, JE; Hof, PR; Ely, JJ; Hopkins, WD; Raghanti, MA; Lewandowski, AH; Wray, GA; Sherwood, CC, Analysis of synaptic gene expression in the neocortex of primates reveals evolutionary changes in glutamatergic neurotransmission., Cerebral Cortex (New York, N.Y. : 1991), vol. 25 no. 6 (June, 2015), pp. 1596-1607, ISSN 1047-3211
  26. Babbitt, CC; Pfefferle, LW; Crawford, GE; Wray, GA, Evolution of gene expression network underlying a disease state, Integrative and Comparative Biology, vol. 55 (April, 2015), pp. E7-E7, OXFORD UNIV PRESS INC
  27. Boyd, JL; Skove, SL; Rouanet, JP; Pilaz, L-J; Bepler, T; Gordân, R; Wray, GA; Silver, DL, Human-chimpanzee differences in a FZD8 enhancer alter cell-cycle dynamics in the developing neocortex., Curr Biol, vol. 25 no. 6 (March, 2015), pp. 772-779, ISSN 0960-9822
  28. Bauernfeind, AL; Reyzer, ML; Caprioli, RM; Ely, JJ; Babbitt, CC; Wray, GA; Hof, PR; Sherwood, CC, Differences in energy metabolism in the brains of humans and chimpanzees: a study of protein expression, American Journal of Physical Anthropology, vol. 156 (March, 2015), pp. 80-80, WILEY-BLACKWELL
  29. Babbitt, CC; Wray, GA, Evolution of gene expression network underlying a disease state in humans and non-human primates, American Journal of Physical Anthropology, vol. 156 (March, 2015), pp. 74-74, WILEY-BLACKWELL
  30. Laland, K; Uller, T; Feldman, M; Sterelny, K; Müller, GB; Moczek, A; Jablonka, E; Odling-Smee, J; Wray, GA; Hoekstra, HE; Futuyma, DJ; Lenski, RE; Mackay, TFC; Schluter, D; Strassmann, JE, Does evolutionary theory need a rethink?, Nature, vol. 514 no. 7521 (October, 2014), pp. 161-164, NATURE PUBLISHING GROUP, ISSN 0028-0836
  31. Horvath, JE; Ramachandran, GL; Fedrigo, O; Nielsen, WJ; Babbitt, CC; St Clair, EM; Pfefferle, LW; Jernvall, J; Wray, GA; Wall, CE, Genetic comparisons yield insight into the evolution of enamel thickness during human evolution., Journal of Human Evolution, vol. 73 (August, 2014), pp. 75-87, ISSN 0047-2484
  32. Liu, S; Lorenzen, ED; Fumagalli, M; Li, B; Harris, K; Xiong, Z; Zhou, L; Korneliussen, TS; Somel, M; Babbitt, C; Wray, G; Li, J; He, W; Wang, Z; Fu, W; Xiang, X; Morgan, CC; Doherty, A; O'Connell, MJ; McInerney, JO; Born, EW; Dalén, L; Dietz, R; Orlando, L; Sonne, C; Zhang, G; Nielsen, R; Willerslev, E; Wang, J, Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears., Cell, vol. 157 no. 4 (May, 2014), pp. 785-794, ISSN 0092-8674
  33. Wygoda, JA; Yang, Y; Byrne, M; Wray, GA, Transcriptomic analysis of the highly derived radial body plan of a sea urchin., Genome Biology and Evolution, vol. 6 no. 4 (April, 2014), pp. 964-973
  34. Bauernfeind, AL; Soderblom, EJ; Turner, ME; Moseley, AM; Ely, JJ; Hof, PR; Sherwood, CC; Wray, GA; Babbitt, CC, Differential gene and protein expression in the human and chimpanzee brain: A comparison using high-throughput techniques, American Journal of Physical Anthropology, vol. 153 (March, 2014), pp. 73-73, WILEY-BLACKWELL, ISSN 0002-9483
  35. Wygoda, JA; Byrne, M; Mcclay, DR; Wray, GA, Shifts in the Expression of Developmental Regulatory Genes Involved in the Evolution of a Novel Life History Difference, Integrative and Comparative Biology, vol. 54 (January, 2014), pp. E230-E230, OXFORD UNIV PRESS INC
  36. Wygoda, JA; Koop, D; Yang, J; Wray, GA; Byrne, M, Developmental Transcriptome of Heliociaris erythrogramma - from bilateral larva to radial juvenile, Integrative and Comparative Biology, vol. 54 (January, 2014), pp. E372-E372, OXFORD UNIV PRESS INC
  37. Ganapathy, G; Howard, JT; Ward, JM; Li, J; Li, B; Li, Y; Xiong, Y; Zhang, Y; Zhou, S; Schwartz, DC; Schatz, M; Aboukhalil, R; Fedrigo, O; Bukovnik, L; Wang, T; Wray, G; Rasolonjatovo, I; Winer, R; Knight, JR; Koren, S; Warren, WC; Zhang, G; Phillippy, AM; Jarvis, ED, High-coverage sequencing and annotated assemblies of the budgerigar genome., Gigascience, vol. 3 (2014), pp. 11
  38. Garfield, DA; Runcie, DE; Babbitt, CC; Haygood, R; Nielsen, WJ; Wray, GA, The impact of gene expression variation on the robustness and evolvability of a developmental gene regulatory network., Plos Biology, vol. 11 no. 10 (October, 2013), pp. e1001696
  39. Runcie, DE; Wiedmann, RT; Archie, EA; Altmann, J; Wray, GA; Alberts, SC; Tung, J, Social environment influences the relationship between genotype and gene expression in wild baboons., Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol. 368 no. 1618 (May, 2013), pp. 20120345
  40. Runcie, DE; Garfield, DA; Babbitt, CC; Pfefferle, A; Nielsen, WJ; Wray, GA, Phenotypic plasticity and the developmental regulatory network in the purple sea urchin, edited by Johnson, C, Echinoderms in a Changing World (January, 2013), pp. 300-301, CRC PRESS-TAYLOR & FRANCIS GROUP, ISBN 978-1-138-00010-0
  41. Wray, GA; Garfield, D; Runcie, D, Evolution of an embryonic gene regulatory network in the sea urchin Strongylocentrotus purpuratus, edited by Johnson, C, Echinoderms in a Changing World (January, 2013), pp. 276-276, CRC PRESS-TAYLOR & FRANCIS GROUP, ISBN 978-1-138-00010-0
  42. Wray, GA, Genomics and the evolution of phenotypic traits, Annual Review of Ecology, Evolution, and Systematics, vol. 44 no. 1 (January, 2013), pp. 51-72, ANNUAL REVIEWS, ISSN 1543-592X
  43. Pfefferle, LW; Wray, GA, Insights from a chimpanzee adipose stromal cell population: opportunities for adult stem cells to expand primate functional genomics., Genome Biology and Evolution, vol. 5 no. 10 (January, 2013), pp. 1995-2005
  44. L.W. Pfefferle and G.A. Wray, Insights from a chimpanzee adipose stromal cells population: opportunities for adult stem cells to expand primate functional genomics, Genome Biology and Evolution, vol. 5 (2013), pp. 1995-2005
  45. Runcie, DE; Garfield, DA; Babbitt, CC; Wygoda, JA; Mukherjee, S; Wray, GA, Genetics of gene expression responses to temperature stress in a sea urchin gene network., Molecular Ecology, vol. 21 no. 18 (September, 2012), pp. 4547-4562
  46. Shibata, Y; Sheffield, NC; Fedrigo, O; Babbitt, CC; Wortham, M; Tewari, AK; London, D; Song, L; Lee, B-K; Iyer, VR; Parker, SCJ; Margulies, EH; Wray, GA; Furey, TS; Crawford, GE, Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection., Plos Genet, vol. 8 no. 6 (June, 2012), pp. e1002789
  47. Babbitt, CC; Pfefferle, LW; Fedrigo, O; Wray, GA, Conservation and function of noncoding RNAs in primate evolution, Integrative and Comparative Biology, vol. 52 (April, 2012), pp. E8-E8, OXFORD UNIV PRESS INC, ISSN 1540-7063
  48. Garfield, D; Haygood, R; Nielsen, WJ; Wray, GA, Population genetics of cis-regulatory sequences that operate during embryonic development in the sea urchin Strongylocentrotus purpuratus., Evolution & Development, vol. 14 no. 2 (March, 2012), pp. 152-167
  49. Horvath, JE; Wu, C; Toler, M; Fedrigo, O; Pfefferle, LW; Moore, A; Ramachandran, GL; Babbitt, CC; Jernvall, J; Wray, GA; Wall, CE, Enamel thickness in Microcebus murinus and Macaca mulana and the evolutionary genetics of enamel matrix proteins in hominoids., American Journal of Physical Anthropology, vol. 147 (January, 2012), pp. 168-168, WILEY-BLACKWELL, ISSN 0002-9483
  50. Babbitt, CC; Tung, J; Wray, GA; Alberts, SC, Changes in gene expression associated with reproductive maturation in wild female baboons., Genome Biology and Evolution, vol. 4 no. 2 (January, 2012), pp. 102-109, ISSN 1759-6653
  51. Smith, MS; Wray, GA; Raff, RA, Revisiting cell lineage and cell fate in light of the evolution of axis formation in Heliocidaris erythrogramma, Evolution & Development (2012)
  52. Bilbo, SD; Wray, GA; Perkins, SE; Parker, W, Reconstitution of the human biome as the most reasonable solution for epidemics of allergic and autoimmune diseases., Med Hypotheses, vol. 77 no. 4 (October, 2011), pp. 494-504
  53. Wray, GA, Evolution. CNCing is believing., Science (New York, N.Y.), vol. 333 no. 6045 (August, 2011), pp. 946-947
  54. Babbitt, CC; Warner, LR; Fedrigo, O; Wall, CE; Wray, GA, Genomic signatures of diet-related shifts during human origins., Proceedings of the Royal Society B: Biological Sciences, vol. 278 no. 1708 (April, 2011), pp. 961-969
  55. Pfefferle, AD; Warner, LR; Wang, CW; Nielsen, WJ; Babbitt, CC; Fedrigo, O; Wray, GA, Comparative expression analysis of the phosphocreatine circuit in extant primates: Implications for human brain evolution., Journal of Human Evolution, vol. 60 no. 2 (February, 2011), pp. 205-212
  56. Tung, J; Akinyi, MY; Mutura, S; Altmann, J; Wray, GA; Alberts, SC, Allele-specific gene expression in a wild nonhuman primate population., Molecular Ecology, vol. 20 no. 4 (February, 2011), pp. 725-739
  57. Fedrigo, O; Pfefferle, AD; Babbitt, CC; Haygood, R; Wall, CE; Wray, GA, A potential role for glucose transporters in the evolution of human brain size., Brain, Behavior and Evolution, vol. 78 no. 4 (January, 2011), pp. 315-326
  58. Szövényi, P; Rensing, SA; Lang, D; Wray, GA; Shaw, AJ, Generation-biased gene expression in a bryophyte model system., Molecular Biology and Evolution, vol. 28 no. 1 (January, 2011), pp. 803-812
  59. Yokoyama, KD; Thorne, JL; Wray, GA, Coordinated genome-wide modifications within proximal promoter cis-regulatory elements during vertebrate evolution., Genome Biology and Evolution, vol. 3 (January, 2011), pp. 66-74
  60. P. Szovenyi, S.A. Rensing, D. Lang, G.A. Wray, A.J. Shaw, Generation-biased gene expression in a bryophyte model systems, Molecular Biology and Evolution, vol. 28 (2011), pp. 803-812
  61. Babbitt, CC; Warner, LR; Fedrigo, O; Wall, CE; Wray, GA, Genomic signatures of diet-related shifts in primate evolution, Proceedings of the Royal Society of London B, vol. 278 (2011), pp. 961-969
  62. Fedrigo, O; Pfefferele, AD; Babbitt, CC; Haygood, R; Wall, CE; Wray, GA, Molecular evidence that a metabolic trade-off contributed to human brain size evolution, Brain, Behavior, and Evolution, vol. 78 (2011), pp. 315-326
  63. Pfefferle, AD; Warner, LR; Wang, CW; Nielsen, WJ; Babbitt, CC; Fedrigo, O; Wray, GA, Expression analysis of the phosphocreatine circuit in extant primates: Implications for human brain evolution, Journal for Human Evolution, vol. 60 (2011), pp. 205-211
  64. Tung, J; Alberts, SC; Wray, GA, Evolutionary genetics in wild primates: combining genetic approaches with field studies of natural populations., Trends in Genetics : Tig, vol. 26 no. 8 (August, 2010), pp. 353-362, ISSN 0168-9525
  65. Haygood, R; Babbitt, CC; Fedrigo, O; Wray, GA, Contrasts between adaptive coding and noncoding changes during human evolution., Proceedings of the National Academy of Sciences of the United States of America, vol. 107 no. 17 (April, 2010), pp. 7853-7857
  66. Babbitt, CC; Silverman, JS; Haygood, R; Reininga, JM; Rockman, MV; Wray, GA, Multiple Functional Variants in cis Modulate PDYN Expression., Molecular Biology and Evolution, vol. 27 no. 2 (February, 2010), pp. 465-479
  67. Babbitt, CC; Fedrigo, O; Pfefferle, AD; Boyle, AP; Horvath, JE; Furey, TS; Wray, GA, Both noncoding and protein-coding RNAs contribute to gene expression evolution in the primate brain., Genome Biology and Evolution, vol. 2 (January, 2010), pp. 67-79
  68. Tung, J; Alberts, SC; Wray, GA, Evolution of functional genetic variation at immune loci in wild baboons., American Journal of Physical Anthropology (January, 2010), pp. 231-231, WILEY-LISS, ISSN 0002-9483
  69. Oliver, TA; Garfield, DA; Manier, MK; Haygood, R; Wray, GA; Palumbi, SR, Whole-genome positive selection and habitat-driven evolution in a shallow and a deep-sea urchin., Genome Biology and Evolution, vol. 2 (January, 2010), pp. 800-814, ISSN 1759-6653
  70. Cruz-Gordillo, P; Fedrigo, O; Wray, GA; Babbitt, CC, Extensive changes in the expression of the opioid genes between humans and chimpanzees., Brain, Behavior and Evolution, vol. 76 no. 2 (January, 2010), pp. 154-162
  71. Fedrigo, O; Warner, LR; Pfefferle, AD; Babbitt, CC; Cruz-Gordillo, P; Wray, GA, A pipeline to determine RT-QPCR control genes for evolutionary studies: application to primate gene expression across multiple tissues., Plos One, vol. 5 no. 9 (January, 2010), pp. e12489
  72. Garfield, DA; Wray, GA, The evolution of gene regulatory interactions, Bioscience, vol. 60 no. 1 (January, 2010), pp. 15-23, Oxford University Press (OUP), ISSN 0006-3568
  73. Fédrigo, O; Wray, GA, Developmental evolution: how beetles evolved their shields., Current Biology : Cb, vol. 20 no. 2 (January, 2010), pp. R64-R66
  74. Fedrigo, O; Warner, LR; Pfefferle, AD; Babbitt, CC; Cruz-Gordillo, P; Wray, GA, A pipeline to determine RT-QPCR control genes for evolutionary studies: Application to primate gene expression across multiple tissues, Plos One, vol. 5 no. 9 (2010), pp. 1-7, ISSN 1932-6203
  75. Tung, J; Fédrigo, O; Haygood, R; Mukherjee, S; Wray, GA, Genomic features that predict allelic imbalance in humans suggest patterns of constraint on gene expression variation., Molecular Biology and Evolution, vol. 26 no. 9 (September, 2009), pp. 2047-2059
  76. Warner, LR; Babbitt, CC; Primus, AE; Severson, TF; Haygood, R; Wray, GA, Functional consequences of genetic variation in primates on tyrosine hydroxylase (TH) expression in vitro., Brain Research, vol. 1288 (September, 2009), pp. 1-8
  77. Tung, J; Primus, A; Bouley, AJ; Severson, TF; Alberts, SC; Wray, GA, Evolution of a malaria resistance gene in wild primates., Nature, vol. 460 no. 7253 (July, 2009), pp. 388-391 (in revision.)
  78. Yokoyama, KD; Ohler, U; Wray, GA, Measuring spatial preferences at fine-scale resolution identifies known and novel cis-regulatory element candidates and functional motif-pair relationships., Nucleic Acids Res, vol. 37 no. 13 (July, 2009), pp. e92
  79. Garfield, DA; Wray, GA, Comparative embryology without a microscope: using genomic approaches to understand the evolution of development., Journal of Biology, vol. 8 no. 7 (January, 2009), pp. 65
  80. Yokoyama, KD; Ohler, U; Wray, GA, Spatial preferences identify known and novel cis-regulatory element candidates and functional motif-pair relationships, Nucleic Acids Research, vol. 37 no. 13 (2009), pp. e92
  81. Haygood, R; Fedrigo, O; Wray, GA, Reply to "Rapidly evolving human promoter regions", Nature Genetics, vol. 40 no. 11 (November, 2008), pp. 1263-1264, Springer Nature, ISSN 1061-4036
  82. Wray, GA; Babbitt, CC, Genetics. Enhancing gene regulation., Science (New York, N.Y.), vol. 321 no. 5894 (September, 2008), pp. 1300-1301
  83. Horvath, JE; Weisrock, DW; Embry, SL; Fiorentino, I; Balhoff, JP; Kappeler, P; Wray, GA; Willard, HF; Yoder, AD, Development and application of a phylogenomic toolkit: resolving the evolutionary history of Madagascar's lemurs., Genome Research, vol. 18 no. 3 (March, 2008), pp. 489-499, ISSN 1088-9051
  84. Mitchell-Olds, T; Feder, M; Wray, G, Evolutionary and ecological functional genomics., Heredity, vol. 100 no. 2 (February, 2008), pp. 101-102
  85. Wray, GA; Babbitt, CC, Enhancing gene regulation, Science, vol. 321 no. 5894 (2008), pp. 1300-1301
  86. Wray, GA, Developmental Genes and the Evolution of Morphology, in Palaeobiology II (December, 2007), pp. 147-152, ISBN 0632051477
  87. Sumrall, CD; Wray, GA, Ontogeny in the fossil record: Diversification of body plans and the evolution of "aberrant" symmetry in Paleozoic echinoderms, Paleobiology, vol. 33 no. 1 (December, 2007), pp. 149-163, Cambridge University Press (CUP), ISSN 0094-8373
  88. Bowsher, JH; Wray, GA; Abouheif, E, Growth and patterning are evolutionarily dissociated in the vestigial wing discs of workers of the red imported fire ant, Solenopsis invicta., Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution, vol. 308 no. 6 (December, 2007), pp. 769-776, ISSN 1552-5007
  89. Babbitt, CC; Haygood, R; Wray, GA, When two is better than one., Cell, vol. 131 no. 2 (October, 2007), pp. 225-227, ISSN 0092-8674
  90. Haygood, R; Fedrigo, O; Hanson, B; Yokoyama, K-D; Wray, GA, Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution., Nature Genetics, vol. 39 no. 9 (September, 2007), pp. 1140-1144, ISSN 1061-4036
  91. Wray, GA, The evolutionary significance of cis-regulatory mutations., Nature Reviews. Genetics, vol. 8 no. 3 (March, 2007), pp. 206-216, ISSN 1471-0056
  92. Tishkoff, SA; Reed, FA; Ranciaro, A; Voight, BF; Babbitt, CC; Silverman, JS; Powell, K; Mortensen, HM; Hirbo, JB; Osman, M; Ibrahim, M; Omar, SA; Lema, G; Nyambo, TB; Ghori, J; Bumpstead, S; Pritchard, JK; Wray, GA; Deloukas, P, Convergent adaptation of human lactase persistence in Africa and Europe., Nature Genetics, vol. 39 no. 1 (January, 2007), pp. 31-40, ISSN 1061-4036
  93. Babbitt, ; CC, ; Haygood, R; Wray, GA, When two is better than one, Cell, vol. 19 no. 2 (2007), pp. 3-4, ISSN 0092-8674
  94. Tishkoff, ; A, S; Reed, FA; Ranciaro, A; Voight, BF; Babbitt, CC; Silverman, JS; Powell, K; Mortensen, H; Hirbo, JB; Osman, M; Ibrahim, M; Omar, SA; Lema, G; N, TB; Ghori, J; Bumpstead, S; Pritchard, JK; Wray, GA; Deloukas, P, Convergent adaptation in humans: the genetic basis of lactase persistence in Africa, Nature Genetics, vol. 39 no. 1 (2007), pp. 31-40, ISSN 1061-4036
  95. Nyberg, KG; Ciampaglio, CN; Wray, GA, Tracing the ancestry of the great white shark, Carcharodon carcharias, using morphometric analyses of fossil teeth, Journal of Vertebrate Paleontology, vol. 26 no. 4 (December, 2006), pp. 806-814, Informa UK Limited, ISSN 0272-4634
  96. Babbitt, CC; Wray, GA, Functional analysis of cis-regulatory evolution in humans and other primates, Integrative and Comparative Biology, vol. 46 (December, 2006), pp. E6-E6, OXFORD UNIV PRESS INC, ISSN 1540-7063
  97. Sea Urchin Genome Sequencing Consortium, ; Sodergren, E; Weinstock, GM; Davidson, EH; Cameron, RA; Gibbs, RA; Angerer, RC; Angerer, LM; Arnone, MI; Burgess, DR; Burke, RD; Coffman, JA; Dean, M; Elphick, MR; Ettensohn, CA; Foltz, KR; Hamdoun, A; Hynes, RO; Klein, WH; Marzluff, W; McClay, DR; Morris, RL; Mushegian, A; Rast, JP; Smith, LC; Thorndyke, MC; Vacquier, VD; Wessel, GM; Wray, G; Zhang, L; Elsik, CG; Ermolaeva, O; Hlavina, W; Hofmann, G; Kitts, P; Landrum, MJ; Mackey, AJ; Maglott, D; Panopoulou, G; Poustka, AJ; Pruitt, K; Sapojnikov, V; Song, X; Souvorov, A; Solovyev, V; Wei, Z; Whittaker, CA; Worley, K; Durbin, KJ; Shen, Y; Fedrigo, O; Garfield, D; Haygood, R; Primus, A; Satija, R; Severson, T; Gonzalez-Garay, ML; Jackson, AR; Milosavljevic, A; Tong, M; Killian, CE; Livingston, BT; Wilt, FH; Adams, N; Bellé, R; Carbonneau, S; Cheung, R; Cormier, P; Cosson, B; Croce, J; Fernandez-Guerra, A; Genevière, A-M; Goel, M; Kelkar, H; Morales, J; Mulner-Lorillon, O; Robertson, AJ; Goldstone, JV; Cole, B; Epel, D; Gold, B; Hahn, ME; Howard-Ashby, M; Scally, M; Stegeman, JJ; Allgood, EL; Cool, J; Judkins, KM; McCafferty, SS; Musante, AM; Obar, RA; Rawson, AP; Rossetti, BJ; Gibbons, IR; Hoffman, MP; Leone, A; Istrail, S; Materna, SC; Samanta, MP; Stolc, V; Tongprasit, W; Tu, Q; Bergeron, K-F; Brandhorst, BP; Whittle, J; Berney, K; Bottjer, DJ; Calestani, C; Peterson, K; Chow, E; Yuan, QA; Elhaik, E; Graur, D; Reese, JT; Bosdet, I; Heesun, S; Marra, MA; Schein, J; Anderson, MK; Brockton, V; Buckley, KM; Cohen, AH; Fugmann, SD; Hibino, T; Loza-Coll, M; Majeske, AJ; Messier, C; Nair, SV; Pancer, Z; Terwilliger, DP; Agca, C; Arboleda, E; Chen, N; Churcher, AM; Hallböök, F; Humphrey, GW; Idris, MM; Kiyama, T; Liang, S; Mellott, D; Mu, X; Murray, G; Olinski, RP; Raible, F; Rowe, M; Taylor, JS; Tessmar-Raible, K; Wang, D; Wilson, KH; Yaguchi, S; Gaasterland, T; Galindo, BE; Gunaratne, HJ; Juliano, C; Kinukawa, M; Moy, GW; Neill, AT; Nomura, M; Raisch, M; Reade, A; Roux, MM; Song, JL; Su, Y-H; Townley, IK; Voronina, E; Wong, JL; Amore, G; Branno, M; Brown, ER; Cavalieri, V; Duboc, V; Duloquin, L; Flytzanis, C; Gache, C; Lapraz, F; Lepage, T; Locascio, A; Martinez, P; Matassi, G; Matranga, V; Range, R; Rizzo, F; Röttinger, E; Beane, W; Bradham, C; Byrum, C; Glenn, T; Hussain, S; Manning, G; Miranda, E; Thomason, R; Walton, K; Wikramanayke, A; Wu, S-Y; Xu, R; Brown, CT; Chen, L; Gray, RF; Lee, PY; Nam, J; Oliveri, P; Smith, J; Muzny, D; Bell, S; Chacko, J; Cree, A; Curry, S; Davis, C; Dinh, H; Dugan-Rocha, S; Fowler, J; Gill, R; Hamilton, C; Hernandez, J; Hines, S; Hume, J; Jackson, L; Jolivet, A; Kovar, C; Lee, S; Lewis, L; Miner, G; Morgan, M; Nazareth, LV; Okwuonu, G; Parker, D; Pu, L-L; Thorn, R; Wright, R, The genome of the sea urchin Strongylocentrotus purpuratus., Science (New York, N.Y.), vol. 314 no. 5801 (November, 2006), pp. 941-952
  98. Loisel, DA; Rockman, MV; Wray, GA; Altmann, J; Alberts, SC, Ancient polymorphism and functional variation in the primate MHC-DQA1 5' cis-regulatory region., Proceedings of the National Academy of Sciences of the United States of America, vol. 103 no. 44 (October, 2006), pp. 16331-16336, ISSN 0027-8424
  99. Romano, LA; Wray, GA, Endo16 is required for gastrulation in the sea urchin Lytechinus variegatus., Development, Growth & Differentiation, vol. 48 no. 8 (October, 2006), pp. 487-497, ISSN 0012-1592
  100. Wray, GA, The evolution of embryonic gene expression in sea urchins., Integrative and Comparative Biology, vol. 46 no. 3 (June, 2006), pp. 233-242, ISSN 1540-7063
  101. Wray, GA, Evolution: spot on (and off)., Nature, vol. 440 no. 7087 (April, 2006), pp. 1001-1002, ISSN 0028-0836
  102. Rudd, MK; Wray, GA; Willard, HF, The evolutionary dynamics of alpha-satellite., Genome Research, vol. 16 no. 1 (January, 2006), pp. 88-96, ISSN 1088-9051
  103. Sumrall, CD; Wray, GA, Developmental control of ambulacral reduction in fossil echinoderms, Paleobiology, vol. 33 (2006), pp. 149-163
  104. Wray, GA, Spot on (and off), Nature, vol. 440 no. 7087 (2006), pp. 1001-1002, ISSN 0028-0836
  105. Rockman, MV; Hahn, MW; Soranzo, N; Zimprich, F; Goldstein, DB; Wray, GA, Ancient and recent positive selection transformed opioid cis-regulation in humans., Plos Biology, vol. 3 no. 12 (December, 2005), pp. e387, ISSN 1545-7885
  106. Mooi, R; David, B; Wray, GA, Arrays in rays: terminal addition in echinoderms and its correlation with gene expression., Evolution & Development, vol. 7 no. 6 (November, 2005), pp. 542-555, ISSN 1520-541X
  107. Balhoff, JP; Wray, GA, Evolutionary analysis of the well characterized endo16 promoter reveals substantial variation within functional sites., Proceedings of the National Academy of Sciences of the United States of America, vol. 102 no. 24 (June, 2005), pp. 8591-8596, ISSN 0027-8424
  108. Wray, GA, Evolutionary mechanisms that operate on embryonic gene expression in purple sea urchin Strongylocentrotus purpuratus, Integrative and Comparative Biology, vol. 44 no. 6 (December, 2004), pp. 668-668, OXFORD UNIV PRESS INC, ISSN 1540-7063
  109. Rockman, MV; Hahn, MW; Soranzo, N; Loisel, DA; Goldstein, DB; Wray, GA, Positive selection on MMP3 regulation has shaped heart disease risk., Current Biology : Cb, vol. 14 no. 17 (September, 2004), pp. 1531-1539, ISSN 0960-9822
  110. Hahn, MW; Rockman, MV; Soranzo, N; Goldstein, DB; Wray, GA, Population genetic and phylogenetic evidence for positive selection on regulatory mutations at the factor VII locus in humans., Genetics, vol. 167 no. 2 (June, 2004), pp. 867-877, ISSN 0016-6731
  111. Levinton, J; Dubb, L; Wray, GA, Simulations of evolutionary radiations and their application to understanding the probability of a Cambrian explosion, Journal of Paleontology, vol. 78 no. 1 (January, 2004), pp. 31-38, Cambridge University Press (CUP)
  112. Bely, AE; Wray, GA, Molecular phylogeny of naidid worms (Annelida: Clitellata) based on cytochrome oxidase I., Molecular Phylogenetics and Evolution, vol. 30 no. 1 (January, 2004), pp. 50-63, ISSN 1055-7903
  113. Ettensohn, CA; Wessel, GM; Wray, GA, The invertebrate deuterostomes: an introduction to their phylogeny, reproduction, development, and genomics., Methods in Cell Biology, vol. 74 (January, 2004), pp. 1-13, ISSN 0091-679X
  114. Wray, GA; Kitazawa, C; Miner, B, Culture of echinoderm larvae through metamorphosis., Methods in Cell Biology, vol. 74 (January, 2004), pp. 75-86, ISSN 0091-679X
  115. Wray, G. A., C. Kitazawa, and B. Miner, Culture of echinoderm larvae though metamorphosis, in Development of Sea Urchins, Ascidians, and Other Invertebrate Deuterostomes: Experimental Approaches (2004), pp. 75-86, Academic Press, San Diego CA
  116. Bely, AE; Wray, GA, Molecular phylogeny of naidid worms (Annelida: Clitellata), Molecular Phylogeny and Evolution, vol. 30 (2004), pp. 50-63
  117. Rockman, MV; Hahn, MW; Soranzo, N; Goldstein, DB; Wray, GA, Positive selection on a human-specific transcription factor binding site regulating IL4 expression., Current Biology : Cb, vol. 13 no. 23 (December, 2003), pp. 2118-2123, ISSN 0960-9822
  118. Romano, LA; Wray, GA, Conservation of Endo16 expression in sea urchins despite evolutionary divergence in both cis and trans-acting components of transcriptional regulation., Development (Cambridge, England), vol. 130 no. 17 (September, 2003), pp. 4187-4199, ISSN 0950-1991
  119. Wray, GA; Hahn, MW; Abouheif, E; Balhoff, JP; Pizer, M; Rockman, MV; Romano, LA, The evolution of transcriptional regulation in eukaryotes., Molecular Biology and Evolution, vol. 20 no. 9 (September, 2003), pp. 1377-1419, ISSN 0737-4038
  120. Knott, KE; Balser, EJ; Jaeckle, WB; Wray, GA, Identification of asteroid genera with species capable of larval cloning., The Biological Bulletin, vol. 204 no. 3 (June, 2003), pp. 246-255
  121. Hahn, MW; Stajich, JE; Wray, GA, The effects of selection against spurious transcription factor binding sites., Molecular Biology and Evolution, vol. 20 no. 6 (June, 2003), pp. 901-906, ISSN 0737-4038
  122. Wray, GA, Transcriptional regulation and the evolution of development., The International Journal of Developmental Biology, vol. 47 no. 7-8 (January, 2003), pp. 675-684, ISSN 0214-6282
  123. Wray, G.A., Transcriptional regulation: evolution, in Encyclopedia of the Human Genome, edited by D. Cooper (2003), Nature Publishing Group
  124. Wray, GA; Strathmann, RR, Stasis, change, and functional constraint in the evolution of animal body plans, whatever they may be, Vie Et Milieu, vol. 52 no. 4 (December, 2002), pp. 189-199
  125. Rockman, MV; Wray, GA, Abundant raw material for cis-regulatory evolution in humans., Molecular Biology and Evolution, vol. 19 no. 11 (November, 2002), pp. 1991-2004, ISSN 0737-4038
  126. Bely, AE; Wray, GA, Getting a head in the world, Natural History, vol. 10/02 (October, 2002), pp. 30-32
  127. Wray, GA, Evolution of a well-characterized embryonic promoter: the Endo16 cis-regulatory system of sea urchins., Developmental Biology, vol. 247 no. 2 (July, 2002), pp. 519-519, ACADEMIC PRESS INC ELSEVIER SCIENCE, ISSN 0012-1606
  128. Abouheif, E; Wray, GA, Evolution of the gene network underlying wing polyphenism in ants., Science (New York, N.Y.), vol. 297 no. 5579 (July, 2002), pp. 249-252
  129. Lowe, CJ; Issel-Tarver, L; Wray, GA, Gene expression and larval evolution: changing roles of distal-less and orthodenticle in echinoderm larvae., Evolution & Development, vol. 4 no. 2 (March, 2002), pp. 111-123, ISSN 1520-541X
  130. Hahn, MW; Wray, GA, The g-value paradox., Evolution & Development, vol. 4 no. 2 (March, 2002), pp. 73-75, ISSN 1520-541X
  131. Lowe, CJ; Issel Tarver, L; Wray, GA, Evolution of new developmental roles for orthodenticle and distal-less in the larvae of echinoderms, Evolution & Development, vol. 4 (February, 2002), pp. 111-123
  132. Wray, GA, Dating branches on the tree of life using DNA., Genome Biology, vol. 3 no. 1 (January, 2002), pp. REVIEWS0001
  133. Wray, GA, Do convergent developmental mechanisms underlie convergent phenotypes?, Brain, Behavior and Evolution, vol. 59 no. 5-6 (January, 2002), pp. 327-336, ISSN 0006-8977
  134. Stone, JR; Wray, GA, Rapid evolution of cis-regulatory sequences via local point mutations., Molecular Biology and Evolution, vol. 18 no. 9 (September, 2001), pp. 1764-1770, ISSN 0737-4038
  135. Bely, AE; Wray, GA, Evolution of regeneration and fission in annelids: insights from engrailed- and orthodenticle-class gene expression., Development (Cambridge, England), vol. 128 no. 14 (July, 2001), pp. 2781-2791
  136. Wray, GA, DEVELOPMENT: Resolving the Hox Paradox, Science (New York, N.Y.), vol. 292 no. 5525 (June, 2001), pp. 2256-2257, American Association for the Advancement of Science (AAAS), ISSN 0036-8075
  137. Wray, GA, A world apart - The larval lifestyle may seem alien to us terrestrial bipeds, but it comes quite naturally to most creatures - especially inhabitants of the world's oceans., Natural History, vol. 110 no. 2 (March, 2001), pp. 52-+, AMER MUSEUM NAT HISTORY, ISSN 0028-0712
  138. Stone, JR; Wray, GA, Rapid appearance of new transcription factor binding sites by local point mutation, Molecular Biology and Evolution, vol. 18 no. 9 (2001), pp. 1764-1770, ISSN 0737-4038
  139. Pizer, M; Wray, GA, The evolution and development of left-right asymmetry in echinoderms., American Zoologist, vol. 40 no. 6 (December, 2000), pp. 1173-1173, AMER SOC ZOOLOGISTS, ISSN 0003-1569
  140. Emily, K; Wray, GA, Controversy and consensus in asteroid systernatics: New insights to ordinal and familial relationships, American Zoologist, vol. 40 no. 3 (December, 2000), pp. 382-392, Society for Integrative and Comparative Biology, ISSN 0003-1569
  141. Wray, GA, The evolution of embryonic patterning mechanisms in animals., Seminars in Cell & Developmental Biology, vol. 11 no. 6 (December, 2000), pp. 385-393, ISSN 1084-9521
  142. Cameron, RA; Mahairas, G; Rast, JP; Martinez, P; Biondi, TR; Swartzell, S; Wallace, JC; Poustka, AJ; Livingston, BT; Wray, GA; Ettensohn, CA; Lehrach, H; Britten, RJ; Davidson, EH; Hood, L, A sea urchin genome project: sequence scan, virtual map, and additional resources., Proceedings of the National Academy of Sciences of the United States of America, vol. 97 no. 17 (August, 2000), pp. 9514-9518
  143. Wray, GA, Peering ahead (cautiously)., Evolution & Development, vol. 2 no. 3 (May, 2000), pp. 125-126
  144. Wray, GA; Lowe, CJ, Developmental regulatory genes and echinoderm evolution., Systematic Biology, vol. 49 no. 1 (March, 2000), pp. 28-51, ISSN 1063-5157
  145. Wray, GA, The evolution of sea urchin development, in Regulatory Processes in Development, edited by Olsson, L; Jacobson, CO, Regulatory Processes in Development, vol. 76 (January, 2000), pp. 49-60, PORTLAND PRESS LTD, ISBN 1-85578-136-0
  146. Wray, GA, Gene expression during echinoderm metamorphosis., Zygote (Cambridge, England), vol. 8 Suppl 1 (January, 2000), pp. S48-S49, ISSN 0967-1994
  147. Lowe, CJ; Wray, GA, Rearing larvae of sea urchins and sea stars for developmental studies., in Methods in Molecular Biology, Vol. 135: Developmental Biology Protocols, edited by R. Tuan & C. Lo, Methods in Molecular Biology (Clifton, N.J.), vol. 135 (January, 2000), pp. 9-15, Totowa NJ: Humana Press
  148. Wray, GA, Peering ahead (cautiously), Evolution and Development, vol. 2 no. 3 (2000), pp. 1-2
  149. Wray, GA; Lowe, CJ, Developmental regulatory genes and echinoderm evolution, Systematic Biology, vol. 49 no. 1 (2000), pp. 151-174, ISSN 1063-5157
  150. Wray, GA, The evolution of embryonic patterning mechanisms in animals, Seminars in Cell and Developmental Biology, vol. 11 no. 6 (2000), pp. 353-393, ISSN 1084-9521
  151. Raff, RA; Arthur, W; Carroll, SB; Coates, MI; Wray, G, Chronicling the birth of a discipline., Evolution & Development, vol. 1 no. 1 (July, 1999), pp. 1-2
  152. Abouheif, E; Wray, GA, The evolutionary and developmental genetic basis of wing polymorphism in ants., American Zoologist, vol. 39 no. 5 (January, 1999), pp. 12A-12A, SOC INTEGRATIVE COMPARATIVE BIOLOGY, ISSN 0003-1569
  153. Bely, AE; Wray, GA, Expression of homeobox genes during regeneration and asexual reproduction in an annelid., American Zoologist, vol. 39 no. 5 (January, 1999), pp. 12A-12A, SOC INTEGRATIVE COMPARATIVE BIOLOGY, ISSN 0003-1569
  154. Wray, GA, Evolutionary dissociations between homologous genes and homologous structures., in Homology, edited by B. Hall, Novartis Foundation Symposium, vol. 222 (January, 1999), pp. 189-203, Chichester (Novartis Foundation Symposium 222): Wiley
  155. Wray, GA; Abouheif, E, When is homology not homology?, Current Opinion in Genetics & Development, vol. 8 no. 6 (December, 1998), pp. 675-680, ISSN 0959-437X
  156. Lowe, CJ; Wray, GA, Erratum: Radical alterations in the roles of homeobox genes during echinoderm evolution (Nature (1997) 389 (718-721)), Nature, vol. 392 no. 6671 (March, 1998), pp. 105, Springer Nature
  157. Wray, GA, Promoter logic., Science (New York, N.Y.), vol. 279 no. 5358 (March, 1998), pp. 1871-1872, ISSN 0036-8075
  158. Passini, MA; Kurtzman, AL; Canger, AK; Asch, WS; Wray, GA; Raymond, PA; Schechter, N, Cloning of zebrafish vsx1: Expression of a paired-like homeobox gene during CNS development, Developmental Genetics, vol. 23 no. 2 (1998), pp. 128-141, WILEY, ISSN 0192-253X
  159. Abouheif, E; Akam, M; Dickinson, WJ; Holland, PW; Meyer, A; Patel, NH; Raff, RA; Roth, VL; Wray, GA, Homology and developmental genes., Trends in Genetics : Tig, vol. 13 no. 11 (November, 1997), pp. 432-433, ISSN 0168-9525
  160. Lowe, CJ; Wray, GA, Radical alterations in the roles of homeobox genes during echinoderm evolution., Nature, vol. 389 no. 6652 (October, 1997), pp. 718-721, ISSN 0028-0836
  161. Benink, H; Wray, G; Hardin, J, Archenteron precursor cells can organize secondary axial structures in the sea urchin embryo., Development (Cambridge, England), vol. 124 no. 18 (September, 1997), pp. 3461-3470, ISSN 0950-1991
  162. Panganiban, G; Irvine, SM; Lowe, C; Roehl, H; Corley, LS; Sherbon, B; Grenier, JK; Fallon, JF; Kimble, J; Walker, M; Wray, GA; Swalla, BJ; Martindale, MQ; Carroll, SB, The origin and evolution of animal appendages., Proceedings of the National Academy of Sciences of the United States of America, vol. 94 no. 10 (May, 1997), pp. 5162-5166, ISSN 0027-8424
  163. Craig, SF; Slobodkin, LB; Wray, GA; Biermann, CH, The 'paradox' of polyembryony: A review of the cases and a hypothesis for its evolution, Evolutionary Ecology, vol. 11 no. 2 (January, 1997), pp. 127-143, Springer Nature
  164. Wray, GA; Levinton, JS; Shapiro, LH, Molecular evidence for deep Precambrian divergences among metazoan phyla, Science (New York, N.Y.), vol. 274 no. 5287 (January, 1996), pp. 568-581, American Association for the Advancement of Science (AAAS)
  165. Wray, GA, Parallel evolution of nonfeeding larvae in echinoids, Systematic Biology, vol. 45 no. 3 (January, 1996), pp. 308-322, Oxford University Press (OUP)
  166. Wray, GA, Punctuated evolution of embryos, Science (New York, N.Y.), vol. 267 no. 5201 (January, 1995), pp. 1115-1116, American Association for the Advancement of Science (AAAS)
  167. Smith, AB; Littlewood, DTJ; Wray, GA, Comparing patterns of evolution: larval and adult life history stages and ribosomal RNA of post-Palaeozoic echinoids, Philosophical Transactions Royal Society of London, B, vol. 349 no. 1327 (January, 1995), pp. 11-18, The Royal Society
  168. Craig, SF; Slobodkin, LB; Wray, G, The 'paradox' of polyembryony, Trends in Ecology and Evolution, vol. 10 no. 9 (January, 1995), pp. 371-372, Elsevier BV, ISSN 0169-5347
  169. Wray, GA, The evolution of cell lineage in echinoderms, Integrative and Comparative Biology, vol. 34 no. 3 (December, 1994), pp. 353-363, Oxford University Press (OUP), ISSN 1540-7063
  170. Wray, GA; Bely, AE, The evolution of echinoderm development is driven by several distinct factors, Development (Cambridge, England), vol. 120 no. SUPPL. (December, 1994), pp. 97-106
  171. Wray, GA, Developmental evolution: new paradigms and paradoxes., Developmental Genetics, vol. 15 no. 1 (January, 1994), pp. 1-6
  172. Wray, GA; Bely, AE, The evolution of echinoderm development is driven by several distinct factors., Development (Cambridge, England). Supplement, vol. 120 no. SUPPL. (January, 1994), pp. 97-106
  173. Wray, GA, Rates of evolution in developmental processes, Integrative and Comparative Biology, vol. 32 no. 1 (December, 1992), pp. 123-134, Oxford University Press (OUP), ISSN 1540-7063
  174. Wray, GA, The evolution of larval morphology during the post-Paleozoic radiation of echinoids, Paleobiology, vol. 18 no. 3 (January, 1992), pp. 258-287, Cambridge University Press (CUP)
  175. Wray, GA, Rates of evolution in developmental processes, American Zoologist, vol. 32 no. 1 (1992), pp. 123-134
  176. Wray, GA; Raff, RA, The evolution of developmental strategy in marine invertebrates, Trends in Ecology and Evolution, vol. 6 no. 2 (January, 1991), pp. 45-50, Elsevier BV
  177. Henry, JJ; Wray, GA; Raff, RA, Mechanism of an Alternate Type of Echinoderm Blastula Formation: The Wrinkled Blastula of the Sea Urchin Heliocidaris erythrogramma direct development/echinoderm development/morphogenesis/sea urchin embryos/wrinkled blastula, Development, Growth & Differentiation, vol. 33 no. 4 (January, 1991), pp. 317-328, WILEY
  178. Hernry, JJ; Wray, GA; Raff, RA, Mechanism of an alternate type of echinoderm blastula formation: The wrinkled blastula of the sea urchin Heliocidaris erythrogramma, Development, Growth & Differentiation, vol. 33 no. 4 (1991), pp. 317-328, ISSN 0012-1592
  179. Henry, JJ; Wray, GA; Raff, RA, The dorsoventral axis is specified prior to first cleavage in the direct developing sea urchin Heliocidaris erythrogramma., Development (Cambridge, England), vol. 110 no. 3 (November, 1990), pp. 875-884, ISSN 0950-1991
  180. Wray, GA; Raff, RA, Novel origins of lineage founder cells in the direct-developing sea urchin Heliocidaris erythrogramma., Developmental Biology, vol. 141 no. 1 (September, 1990), pp. 41-54, ISSN 0012-1606
  181. Scott, LB; Lennarz, WJ; Raff, RA; Wray, GA, The "lecithotrophic" sea urchin Heliocidaris erythrogramma lacks typical yolk platelets and yolk glycoproteins., Developmental Biology, vol. 138 no. 1 (March, 1990), pp. 188-193, ISSN 0012-1606
  182. NIJHOUT, HF; WRAY, GA; GILBERT, LE, An analysis of the phenotypic effects of certain colour pattern genes in Heliconius (Lepidoptera: Nymphalidae), Biological Journal of the Linnean Society, vol. 40 no. 4 (January, 1990), pp. 357-372, Oxford University Press (OUP), ISSN 0024-4066
  183. Raff, RA; Parr, BA; Parks, AL; Wray, GA, Heterochrony and other mechanisms of radical evolutionary change in early development, Evolutionary Innovations (January, 1990), pp. 71-98
  184. Henry, JJ; Amemiya, S; Wray, GA; Raff, RA, Early inductive interactions are involved in restricting cell fates of mesomeres in sea urchin embryos., Developmental Biology, vol. 136 no. 1 (November, 1989), pp. 140-153, ISSN 0012-1606
  185. Wray, GA; McClay, DR, Molecular Heterochronies and Heterotopies in Early Echinoid Development, Evolution; International Journal of Organic Evolution, vol. 43 no. 4 (July, 1989), pp. 803-803, JSTOR, ISSN 0014-3820
  186. Wray, GA; Raff, RA, Evolutionary modification of cell lineage in the direct-developing sea urchin Heliocidaris erythrogramma., Developmental Biology, vol. 132 no. 2 (April, 1989), pp. 458-470, ISSN 0012-1606
  187. Raff, RA; Wray, GA, Heterochrony: Developmental mechanisms and evolutionary results, Journal of Evolutionary Biology, vol. 2 no. 6 (January, 1989), pp. 409-434, WILEY, ISSN 1010-061X
  188. Wray, GA; McClay, DR, The origin of spicule-forming cells in a 'primitive' sea urchin (Eucidaris tribuloides) which appears to lack primary mesenchyme cells., Development (Cambridge, England), vol. 103 no. 2 (June, 1988), pp. 305-315, ISSN 0950-1991
  189. NIJHOUT, HF; WRAY, GA, Homologies in the colour patterns of the genus Heliconius (Lepidoptera: Nymphalidae), Biological Journal of the Linnean Society, vol. 33 no. 4 (January, 1988), pp. 345-365, Oxford University Press (OUP), ISSN 0024-4066
  190. WRAY, GA; MCCLAY, DR, THE EMBRYONIC MESENCHYME IN A PRIMITIVE SEA-URCHIN, EUCIDARIS-TRIBULOIDES, The Journal of Cell Biology, vol. 103 no. 5 (November, 1986), pp. A371-A371, ROCKEFELLER UNIV PRESS, ISSN 0021-9525
  191. Frederik Nijhout, H; Wray, GA; Kremen, C; Teragawa, CK, Ontogeny, phylogeny and evolution of form: An algorithmic approach, Systematic Zoology, vol. 35 no. 4 (January, 1986), pp. 445-457, Oxford University Press (OUP), ISSN 0039-7989
  192. Nijhout, HF; Wray, GA, Homologies in the colour patterns of the genus Charaxes (Lepidoptera: Nymphalidae), Biological Journal of the Linnean Society, vol. 28 no. 4 (January, 1986), pp. 387-410, Oxford University Press (OUP), ISSN 0024-4066

Papers Accepted

  1. J. Muntane, J.E. Horvath, P. Hof, J. Ely, W.D. Hopkins, M.A. Raghanti, A.H. Lewandowski, G.A. Wray, and C. Sherwood, Analysis of synaptic gene expression in the neocortex of primates reveals evolutionary changes in glutamatergic neurotransmission, Cerebral Cortex (2013)

Papers Submitted

  1. L. Pinto, A. Ragunathan, P. Kapoor, M. McRae, D. Cantelmi, A. Heyland, G.A. Wray, and J. Stone, Rudiment resorption observed serendipitously during sea urchin development (2012)

Book Chapters

  1. G.A. Wray, Embryos and evolution: 150 years of reciprical illumination, in Evolution Since Darwin, edited by M.A. Bell, D.J. Futuyma, W.F. Eanes, J.S. Levinton (2010), pp. 215-239, Sinauer Associates, ISBN 978-0878934133
  2. J. Tung and G.A. Wray, Evolution of traits deduced from genome comparisons, in Encyclopedia of Life Sciences, edited by Nature Publishing Group (2009)
  3. G.A. Wray, Evolutionary synthesis in the genomic era, in Towards an Extended Evolutionary Synthesis (2009), MIT Press
  4. G.A. Wray, Evolution and Development, in Evolution: The First Four Billion Years, edited by M. Ruse and J. Travis (2009), pp. 208-236, Belknap Press

Other

  1. G.A. Wray, Guest in radio interview on evolutionary genomics for talk show "Radio in Vivo" (February 5, 2007) (WCOM.)
  2. MW Hahn and GA Wray, the G-value paradox, Evolution and Development (2001)

Book Chapter

  1. Babbitt, CC and GA Wray, Evolution of human gene expression control, in Encyclopedia of Life Sciences (2007), Nature Publishing Group (electronic resource.)