Publications of Clifford Cunningham    :chronological  combined  bibtex listing:

search www.biology.duke.edu.

Papers Published

  1. AD Thaler, K Zelnio, W Saleu, TF Schultz, J Carlsson, C Cunningham, RC Vrijenhoek, CL Van Dover, The spatial scale of genetic subdivision in populations of Ifremeria nautilei, a hydrothermal-vent gastropod from the southwest Pacific., BMC evolutionary biology, vol. 11 (2011), pp. 372 [doi]  [abs].
  2. Miglietta, M. P. and McNally, L. and Cunningham, C. W., Evolution of Calcium-carbonate Skeletons in the Hydractiniidae, Integrative and Comparative Biology, vol. 50 no. 3 (September, 2010), pp. 428-435 [doi]  [abs].
  3. K. Dexter, J. Terborgh, C.W. Cunningham, Using DNA to assess errors in tropical tree identiļ¬cations: How often are ecologists wrong and when does it matter?, Ecological Monographs, vol. 80 (2010), pp. 267-286 .
  4. M.P. Miglietta P. Schuchert, Peter C.W. Cunningham, Reconciling genealogical and morphological species in a worldwide study of the Family Hydractiniidae (Cnidaria, Hydrozoa), Zoologica Scripta, vol. 38 (July, 2009), pp. 403-430 .
  5. J.C. Regier, J.W. Schultz, A.R.D. Ganley, A. Hussey, D. Shi, B. Ball, A. Zwick, J.E. Stajich, M.P. Cummings, J.W. Martin, C.W. Cunningham, Resolving Arthropod Phylogeny: Exploring Phylogenetic Signal within 41 kb of Protein-Coding Nuclear Gene Sequence, Systematic Biology, vol. 57 no. 6 (December, 2008), pp. 920-938 .
  6. C.W. Cunningham, Lessons Learned from Coordinating Research on the North Atlantic, edited by C.W. Cunningham, Ecology, vol. 89 no. 11 (November, 2008), pp. S1-S2 .
  7. D.M. Percy, A. Garver, W.L. Wagner, H.F. James, C.W. Cunningham, S.E. Miller, R.C. Fleischer, Progressive island colonization and ancient origin of Hawaiian Metrosideros (Myrtaceae), Proc. Roy. Soc. Ser. B, vol. 275 (July, 2008), pp. 1479-1490 .
  8. A. Lindner, S. D. Cairns, C. W. Cunningham, Multiple origins of shallow-water corals from deep-sea ancestors, PLOs ONE, vol. 3 no. 6 (June, 2008), pp. e2429-e2433 .
  9. G. R. Bigg and C. W. Cunningham and G. Ottersen and G. H. Pogson and M. R. Wadley and P. Williamson, Ice-age survival of Atlantic cod: agreement between palaeoecology models and genetics, Proceedings Of The Royal Society B-biological Sciences, vol. 275 no. 1631 (January, 2008), pp. 163 -172 (I was the major author of this paper, but we chose alphabetical order..) .
  10. C. W. Cunningham, How to use genetic data to distinguish between natural and human-mediated introduction of Littorina littorea to North America, Biological Invasions, vol. 10 no. 1 (January, 2008), pp. 1 -- 6 .
  11. C. Riginos and C. W. Cunningham, Hybridization in postglacial marine habitats, Molecular Ecology, vol. 16 no. 19 (October, 2007), pp. 3971 -- 3972 .
  12. M. J. Hickerson and C. W. Cunningham, Nearshore fish (Pholis gunnellus) persists across the North Atlantic through multiple glacial episodes, Molecular Ecology, vol. 15 no. 13 (November, 2006), pp. 4095 -- 4107 .
  13. C. Riginos and C.W. Cunningham, Invited Review: Local adaptation and species segregation in two mussel (Mytilus edulis X Mytilus trossulus) hybrid zones, Molecular Ecology, vol. 14 no. 2 (February, 2005), pp. 381-400 .
  14. M.J. Hickerson C.W. Cunningham, Contrasting quaternary histories in an ecologically divergent pair of low-dispersing intertidal fish (Xiphister) revealed by multi-locus DNA analysis, Evolution, vol. 59 (February, 2005), pp. 344-360 .
  15. J. P. Wares and C. W. Cunningham, Diversification before the most recent glaciation in Balanus glandula, Biological Bulletin, vol. 208 no. 1 (February, 2005), pp. 60 -- 68 .
  16. C.W. Cunningham, The Right Time for Synthesis in Evolutionary Biology, BioScience, vol. 55 no. 2 (February, 2005), pp. 99 .
  17. A.F. Govindarajan, K. K. Halanych. Cunningham, Mitochondrial evolution and phylogeography in the hydrozoan Obelia geniculata (Cnidaria), Marine Biology, vol. 146 (January, 2005), pp. 213-222 .
  18. D. J. Emlen J. Marangelo B. Ball C.W. Cunningham, Diversity in the weapons of sexual selection: horn evolution in the beetle genus onthophagus (coleoptera: scarabaeidae), Evolution, vol. 59 no. 5 (2005), pp. 1060-1084 .
  19. C. Riginos and M. J. Hickerson and C. M. Henzler and C. W. Cunningham, Differential patterns of male and female mtDNA exchange across the Atlantic Ocean in the blue mussel, Mytilus edulis, Evolution, vol. 58 no. 11 (November, 2004), pp. 2438 -- 2451 .
  20. J. P. Wares and D. S. Goldwater and B. Y. Kong and C. W. Cunningham, Refuting a controversial case of a human-mediated marine species introduction, Ecology Letters, vol. 5 no. 4 (July, 2002), pp. 577 -- 584 .
  21. M. W. Hahn and M. D. Rausher and C. W. Cunningham, Distinguishing between selection and population expansion in an experimental lineage of bacteriophage T7, Genetics, vol. 161 no. 1 (May, 2002), pp. 11 -- 20 .
  22. A. M. Young and C. Torres and J. E. Mack and C. W. Cunningham, Morphological and genetic evidence for vicariance and refugium in Atlantic and Gulf of Mexico populations of the hermit crab Pagurus longicarpus, Marine Biology, vol. 140 no. 5 (May, 2002), pp. 1059 -- 1066 .
  23. T. R. Buckley and C. W. Cunningham, The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support, Molecular Biology And Evolution, vol. 19 no. 4 (April, 2002), pp. 394 -- 405 .
  24. C. Riginos and K. Sukhdeo and C. W. Cunningham, Evidence for selection at multiple allozyme loci across a mussel hybrid zone, Molecular Biology And Evolution, vol. 19 no. 3 (March, 2002), pp. 347 -- 351 .
  25. T. H. Oakley and C. W. Cunningham, Molecular phylogenetic evidence for the independent evolutionary origin of an arthropod compound eye, Proceedings Of The National Academy Of Sciences Of The United States Of America, vol. 99 no. 3 (February, 2002), pp. 1426 -- 1430 .
  26. C. L. Morrison and A. W. Harvey and S. Lavery and K. Tieu and Y. Huang and C. W. Cunningham, Mitochondrial gene rearrangements confirm the parallel evolution of the crab-like form, Proceedings Of The Royal Society Of London Series B-biological Sciences, vol. 269 no. 1489 (February, 2002), pp. 345 -- 350 .
  27. C. C. Tudge and C. W. Cunningham, Molecular phylogeny of the mud lobsters and mud shrimps (Crustacea : Decapoda : Thalassinidea) using nuclear 18S rDNA and mitochondrial 16S rDNA, Invertebrate Systematics, vol. 16 no. 6 (2002), pp. 839 -- 847 .
  28. J. P. Wares and C. W. Cunningham, Phylogeography and historical ecology of the North Atlantic intertidal, Evolution, vol. 55 no. 12 (December, 2001), pp. 2455 -- 2469 .
  29. J. P. Wares and S. D. Gaines and C. W. Cunningham, A comparative study of asymmetric migration events across a marine biogeographic boundary, Evolution, vol. 55 no. 2 (February, 2001), pp. 295 -- 306 .
  30. Grosberg, R.K. and C.W. Cunningham, Genetic structure in the sea: from populations to communities, in Marine Community Ecology, pp.61-84, edited by M.D. Bertness, S. Gaines, and M.E. Hay (2001), Sinauer Associates, Sunderland, MA .
  31. T. H. Oakley and C. W. Cunningham, Independent contrasts succeed where ancestor reconstruction fails in a known bacteriophage phylogeny, Evolution, vol. 54 no. 2 (April, 2000), pp. 397 -- 405 .
  32. M. J. Hickerson and C. W. Cunningham, Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, Anomura), Molecular Biology And Evolution, vol. 17 no. 4 (April, 2000), pp. 639 -- 644 .
  33. C. W. Cunningham, Some limitations of ancestral character-state reconstruction when testing evolutionary hypotheses, Systematic Biology, vol. 48 no. 3 (September, 1999), pp. 665 -- 674 .
  34. J. H. Kim and W. Kim and C. W. Cunningham, A new perspective on lower metazoan relationships from 18S rDNA sequences, Molecular Biology And Evolution, vol. 16 no. 3 (March, 1999), pp. 423 -- 427 .
  35. K. Stanger-hall and C. W. Cunningham, Support for a monophyletic Lemuriformes: Overcoming incongruence between data partitions, Molecular Biology And Evolution, vol. 15 no. 11 (November, 1998), pp. 1572 -- 1577 .
  36. C. W. Cunningham and K. E. Omland and T. H. Oakley, Reconstructing ancestral character states: a critical reappraisal, Trends In Ecology & Evolution, vol. 13 no. 9 (September, 1998), pp. 361 -- 366 .
  37. C. W. Cunningham and H. Zhu and D. M. Hillis, Best-fit maximum-likelihood models for phylogenetic inference: Empirical tests with known phylogenies, Evolution, vol. 52 no. 4 (August, 1998), pp. 978 -- 987 .
  38. C. W. Cunningham, Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods, Systematic Biology, vol. 46 no. 3 (September, 1997), pp. 464 -- 478 .
  39. C. W. Cunningham, Can three incongruence tests predict when data should be combined?, Molecular Biology And Evolution, vol. 14 no. 7 (July, 1997), pp. 733 -- 740 .
  40. C. W. Cunningham and K. Jeng and J. Husti and M. Badgett and I. J. Molineux and D. M. Hillis and J. J. Bull, Parallel molecular evolution of deletions and nonsense mutations in bacteriophage T7, Molecular Biology And Evolution, vol. 14 no. 1 (January, 1997), pp. 113 -- 116 .
  41. J. P. Huelsenbeck and J. J. Bull and C. W. Cunningham, Combining data in phylogenetic analysis, Trends In Ecology & Evolution, vol. 11 no. 4 (April, 1996), pp. 152 -- 158 .
  42. D. Bridge and C. W. Cunningham and R. Desalle and L. W. Buss, Class-level relationships in the phylum cnidaria - molecular and morphological evidence, Molecular Biology And Evolution, vol. 12 no. 4 (July, 1995), pp. 679 -- 689 .
  43. J. P. Huelsenbeck and D. L. Swofford and C. W. Cunningham and J. J. Bull and P. J. Waddell, Is character weighting a panacea for the problem of data heterogeneity in phylogenetic analysis, Systematic Biology, vol. 43 no. 2 (June, 1994), pp. 288 -- 291 .
  44. D. M. Hillis and J. P. Huelsenbeck and C. W. Cunningham, Application and accuracy of molecular phylogenies, Science, vol. 264 no. 5159 (April, 1994), pp. 671 -- 677 .
  45. J. J. Bull and J. P. Huelsenbeck and C. W. Cunningham and D. L. Swofford and P. J. Waddell, Partitioning and combining data in phylogenetic analysis, Systematic Biology, vol. 42 no. 3 (September, 1993), pp. 384 -- 397 .
  46. J. J. Bull and C. W. Cunningham and I. J. Molineux and M. R. Badgett and D. M. Hillis, Experimental molecular evolution of bacteriophage-t7, Evolution, vol. 47 no. 4 (August, 1993), pp. 993 -- 1007 .
  47. C. W. Cunningham and L. W. Buss, Molecular evidence for multiple episodes of pedomorphosis in the family hydractiniidae, Biochemical Systematics And Ecology, vol. 21 no. 1 (January, 1993), pp. 57 -- 69 .
  48. D. Bridge and C. W. Cunningham and B. Schierwater and R. Desalle and L. W. Buss, Class-level relationships in the phylum cnidaria - evidence from mitochondrial genome structure, Proceedings Of The National Academy Of Sciences Of The United States Of America, vol. 89 no. 18 (September, 1992), pp. 8750 -- 8753 .
  49. C. W. Cunningham and N. W. Blackstone and L. W. Buss, Evolution of king crabs from hermit-crab ancestors, Nature, vol. 355 no. 6360 (February, 1992), pp. 539 -- 542 .
  50. C. W. Cunningham and L. W. Buss and C. Anderson, Molecular and geologic evidence of shared history between hermit-crabs and the symbiotic genus hydractinia, Evolution, vol. 45 no. 6 (September, 1991), pp. 1301 -- 1316 .
  51. H. A. Lessios and C. W. Cunningham, Gametic incompatibility between species of the sea-urchin echinometra on the 2 sides of the isthmus of panama, Evolution, vol. 44 no. 4 (July, 1990), pp. 933 -- 941 .
  52. P. O. Yund and C. W. Cunningham and L. W. Buss, Recruitment and postrecruitment interactions in a colonial hydroid, Ecology, vol. 68 no. 4 (August, 1987), pp. 971 -- 982 .
  53. M. D. Bertness and C. W. Cunningham, Crab shell crushing predation and gastropod architectural defense, Journal Of Experimental Marine Biology And Ecology, vol. 50 (1981), pp. 213 -- 230 .

Papers Accepted

  1. M.P. Miglietta, CW. Cunningham, Evolution of life cycle, colony morphology and host-specificity in the Family Hydractiniidae (Hydrozoa, Cnidaria), Evolution (2011)  [author's comments].

Papers Submitted

  1. K. Perez, C.W. Cunningham, Evolution in niche and morphology of Mexican land snails, Evolution (2012)  [author's comments].
  2. K. Dexter, J. Terborgh, C.W. Cunningham, Historical effects on beta diversity and community assembly in amazonian trees, PNAS (2011) .

Edited Volumes

  1. C. W. Cunningham, Coordinating Research on the North Atlantic, Ecology, vol. 89 no. 11 (November, 2008) (I edited this special volume, the only special volume of Ecology accepted in the past 8 years..) .

Book Reviews

  1. C.W. Cunningham, Ever since Gould. Book Review of "Stephen Jay Gould: Reflections on his View of Life", Trends in Ecology and Evolution, vol. 24 (2009), pp. 645-646 .

Duke Biology Box 90338 Durham, NC 27708 Phone: 919-660-7372 Fax: 919-660-7293