Publications of Francois M Lutzoni    :chronological  combined  bibtex listing:

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Books

  1. Taylor, J. W., Spatafora, J., O’Donnell, K., Lutzoni, F., James, T., Hibbett, D. S., Geiser, D., Bruns, T. D. and Blackwell, M., The Fungi, in Assembling the Tree of Life, edited by J. Cracraft and M. J. Donoghue (2004), pp. 171-194, Oxford University Press, Oxford, UK .
  2. Lutzoni, F., Lichens, in Encyclopedia of Evolution, edited by M. Pagel, vol. 2 (2002), pp. 618-622, Oxford University Press, Oxford, UK .
  3. Pagel, M. and Lutzoni, F., Accounting for phylogenetic uncertainty in comparative studies of evolution and adaptation, in Biological Evolution and Statistical Physics, edited by M. Laessig and A. Valleriani (2002), pp. 151-164, Springer Verlag, Berlin, Germany .
  4. Kranner, I., and Lutzoni, F., Evolutionary consequences of transition to a lichen symbiotic state and physiological adaptation to oxidative damage associated with poikilohydry, in Plant response to environmental stresses: From phytohormones to genome reorganization., edited by H. R. Lerner (1999), pp. 591-698, Marcel Dekker, New York .

Papers Published

  1. Geml, J., Kauff, F., Brochmann, C., Lutzoni, F., Laursen, G., Redhead, S.A., and Taylor, D.L., Frequent circumarctic and rare transequatorial dispersals in the lichenised agaric genus Lichenomphalia (Hygrophoraceae, Basidiomycota), Fungal Biology (2012) (Published online; doi: 10.1016/j.funbio.2011.12.009.) [doi] .
  2. Prieto, M., Martínez, I., Aragón, G., Gueidan, C. & Lutzoni, F., Molecular phylogeny of Heteroplacidium, Placidium and related catapyrenioid genera (Verrucariaceae, lichen-forming Ascomycota), American Journal of Botany, vol. 99 (2012), pp. 23-35 .
  3. McDonald, T., Dietrich, F., and Lutzoni, F., Multiple horizontal gene transfers of ammonium transporters/ammonia permeases from prokaryotes to eukaryotes: toward a new functional and evolutionary classification, Molecular Biology and Evolution, vol. 29 (2012), pp. 51-60 .
  4. Gaya, E., Högnabba, F., Holguin, A., Molnar, K., Fernandez–Brime, S., Stenroos, S., Arup, U., Søchting, U., Van den Boom, P., Lücking, R., Sipman, H. J. M., Lutzoni, F., Implementing a cumulative supermatrix approach for a comprehensive phylogenetic study of the Teloschistales (Pezizomycotina, Ascomycota), Molecular Phylogenetics and Evolution (2012) (published online; doi: 10.1016/j.ympev.2012.01.012.) [doi] .
  5. Hodkinson, B. P., Gottel, N. R., Schadt, C. W., and Lutzoni, F., Photoautotrophic symbiont and geography are major factors affecting highly-structured and diverse bacterial communities in the lichen microbiome, Environmental Microbiology, vol. 14 (2012), pp. 147-161 (Special issue entitled "Omics Driven Microbial Ecology”.) .
  6. Thüs, H., Muggia, L., Pérez–Ortega, S., Favero–Longo, S. E., Joneson, S., O’Brien, H., Nelsen, M. P., Duque–Thüs, R., Grube, M., Friedl, T., Brodie, J., Andrew, C. J., Lücking, R., Lutzoni, F., and Gueidan, C., Revisiting photobiont diversity in the lichen family Verrucariaceae (Ascomycota), European Journal of Phycology, vol. 46 (2011), pp. 399-415 .
  7. Miadlikowska, J., Schoch, C., Kageyama, S., Molnar, K., Lutzoni, F., and McCune, B., Hypogymnia phylogeny, including Cavernularia, reveals biogeographic structure, The Bryologist, vol. 114 (2011), pp. 392-400 .
  8. Gaya, E., Redelings, B., Navarro-Rosinés, P., Llimona, X., De Cáceres, M., and Lutzoni, F., Align, or not to align? Resolving species complexes within the Caloplaca saxicola group as a case study, Mycologia, vol. 103 (2011), pp. 361-378 [dtl] .
  9. Joneson, S., Armaleo, D., and Lutzoni, F., Fungal and algal gene expression in early developmental stages of lichen symbiosis, Mycologia, vol. 103 (2011), pp. 291-306 [dtl], [doi] .
  10. Hestmark, G., Miadlikowska, J., Kauff, F., Fraker, E., Molnar, K., and Lutzoni, F., Single origin and subsequent diversification of Central Andean endemic Umbilicaria species, Mycologia, vol. 103 (2011), pp. 45-56 [dtl], [doi] .
  11. Schmull, M., Miadlikowska, J., Pelzer, M., Stocker-Wörgötter, E., Hofstetter, V., Fraker, E., Hodkinson, B. P., Reeb, V., Kukwa, M., Lumbsch, H. T., Kauff, F., and Lutzoni, F., Phylogenetic affiliations of members of the heterogeneous lichen-forming fungi of the genus Lecidea sensu Zahlbruckner (Lecanoromycetes, Ascomycota), Mycologia, vol. 103 (2011), pp. 983-1003 .
  12. Fernández-Brime, S., Llimona, X., Molnar, K., Stenroos, S., Högnabba, F., Björk, C., Lutzoni, F., and Gaya, E., Expansion of the Stictidaceae by the addition of the saxicolous lichen-forming genus Ingvariella, Mycologia, vol. 103 (2011), pp. 755-763 .
  13. U'Ren, J., Lutzoni, F., Miadlikowska, J., and Arnold, A. E., Community analysis reveals close affinities between endophytic and endolichenic fungi in mosses and lichens, Microbial Ecology, vol. 60 (2010), pp. 340-353 .
  14. Otalora, M. A. G., Martinez, I., O’Brien, H., Molina, M. C., Aragon, G., and Lutzoni F., Multiple origins of high reciprocal symbiotic specificity at an intercontinental spatial scale among gelatinous lichens (Collemataceae, Lecanoromycetes), Molecular Phylogenetics and Evolution, vol. 56 (2010), pp. 1089-1095 .
  15. Prieto, M., Martinez, I., Aragon, G., Otalora, M. A. G., and Lutzoni, F., Phylogenetic study of Catapyrenium s.str. (Verrucariaceae, lichen-forming Ascomycota) and related genus Placidiopsis, Mycologia, vol. 102 (2010), pp. 291-304 .
  16. Otalora, M. A. G., aragon, G., Molina, M. C., Martinez, I., and Lutzoni, F., Disentangling the Collema-Leptogium complex through a molecular phylogenetic study of the Collemataceae (Peltigerales, lichen-forming Ascomycota), Mycologia, vol. 102 (2010), pp. 279-290 .
  17. Crespo, A., Kauff, F., Divakar, P. K., del Prado, R., Pérez-Ortega, S., Amo de Paz, G., Ferencova, Z., Blanco, O., Roca-Valiente, B., Núnez-Zapata, J., Cubas, P., Argüello, A., Elix, J. A., Esslinger, T. L., Hawksworth, D. L., Millanes, A., Molina, C., Wedin, M., Ahti, T., Aptroot, A., Barreno, E., Bungartz, F., Calvelo, S., Candan, M., Cole, M., Ertz, D., Goffinet, B., Lindblom, L., Lücking, R., Lutzoni, F., Mattsson, J.-E., Messuti, M. I., Miadlikowska, J., Piercey-Normore, M., Rico, V. J., Sipman, H. J. M., Schmitt, I., Spribille, T., Thell, A., Thor, G., Upreti, D. K., and Lumbsch, H. T., Phylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological, and chemical evidence, Taxon, vol. 59 (2010), pp. 1735-1753 .
  18. Joneson, S., and Lutzoni, F., Revisiting compatibility and thigmotropism in the lichen symbiosis, Symbiosis, vol. 47 (2009), pp. 109-115 .
  19. O’Brien, H. E., Miadlikowska, J., and Lutzoni, F., Assessing reproductive isolation in highly diverse communities of the lichen-forming fungus Peltigera, Evolution, vol. 63 (2009), pp. 2076-2086 .
  20. Hodkinson, B. P. and Lutzoni, F., A microbiotic survey of lichen-associated bacteria reveals a new lineage from the Rhizobiales, Symbiosis, vol. 49 (2009), pp. 163-180 .
  21. Lutzoni, F. and Miadlikowska, J., Lichens, Current Biology, vol. 19 (2009), pp. R502-R503 .
  22. Ertz, D., Miadlikowska, J., Lutzoni, F., Dessein, S., Raspé, O., Vigneron, N., Hofstetter, V., Diederich, P., Towards a new classification of the Arthoniales (Ascomycota) based on a three-gene phylogeny focusing on the genus Opegrapha, Mycological Research, vol. 113 (2009), pp. 141-152 .
  23. Schoch, C. L., G.-H. Sung, F. López-Giráldez, J. P. Townsend, J. Miadlikowska, V. Hofstetter, B. Robbertse, P. B. Matheny, F. Kauff, Z. Wang, C. Gueidan, R. M. Andrie, K. Trippe, L. M. Ciufetti, A. Wynns, E. Fraker, B. P. Hodkinson, G. Bonito, R. Yahr, J. Z. Groenewald, M. Arzanlou, G. S. de Hoog, P. W. Crous, D. Hewitt, D. H. Pfister, K. Peterson, M. Gryzenhout, M. J. Wingfield, A. Aptroot, S.-O. Suh, M. Blackwell, D. M. Hillis, G. W. Griffith, L. A. Castlebury, A. Y. Rossman, H. T. Lumbsch, R. Lücking, B. Büdel, A. Rauhut, P. Diederich, D. Ertz, D. M. Geiser, K. Hosaka, P. Inderbitzin, J. Kohlmeyer, B. Volkmann-Kohlmeyer, L. Mostert, K. O’Donnell, H. Sipman, J. D. Rogers, R. A. Shoemaker, J. Sugiyama, R. C. Summerbell, W. Untereiner, P. Johnston, S. Stenroos, A. Zuccaro, P. Dyer, P. Crittenden, M. S. Cole, K. Hansen, J. M. Trappe , F. Lutzoni and J. W. Spatafora, The Ascomycota tree of life: A phylum wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits, Systematic Biology, vol. 58 (2009), pp. 224-239 .
  24. Gueidan, C., Savic, S., Thüs, H., Roux, C., Keller, C., Tibell, L., Pietro, M., Heidmarsson, S., Breuss, O., Orange, A., Fröberg, L., Amtoft-Wynns, A., Navarro-Rosinés, P., Kristinsson, H., Krzewicka, B., Pykälä, J., Grube, M., Lutzoni, F., Generic classification of the Verrucariaceae (Ascomycota) based on molecular and morphological evidence: recent progress and remaining challenges, Taxon, vol. 58 (2009), pp. 184-208 .
  25. Arnold, A. E., Miadlikowska, J., Higgins, K. L., Sarvate, S. D., Gugger, P., Way, A., Hofstetter, V., Kauff, F., Lutzoni, F., A phylogenetic estimation of trophic transition networks for ascomycetous fungi: Are lichens cradles of symbiotrophic fungal diversification?, Systematic Biology, vol. 58 (2009), pp. 283-297 .
  26. Ruibal, C., Gueidan, C., Selbmann, L., Gorbushina, A., Crous, P. W., Groenewald, J. Z., Muggia, L., Grube, M., Isola, D., Schoch, C. L., Staley, J. T., Lutzoni, F., and de Hoog, G. S., Phylogeny of rock-inhabiting fungi related to Dothideomycetes, Studies in Mycology, vol. 64 (2009), pp. 123-133 .
  27. McLaughlin, D. J., Hibbett, D. S., Lutzoni, F., Spatafora, J. W., and Vilgalys, R., The search for the fungal tree of life, Trends in Microbiology, vol. 17 (2009), pp. 488-497 .
  28. Gaya, E., Navarro-Rosinés, P., Llimona, X., Hladun, N. and Lutzoni, F., Phylogenetic reassessment of the Teloschistaceae (lichen-forming Ascomycota, Lecanoromycetes)., Mycological Research, vol. 112 (2008), pp. 528-546 .
  29. Gueidan, C., Ruibal Villasenor, C., de Hoog, S., Gorbushina, A., Untereiner, W. A., Lutzoni, F., An extremotolerant rock-inhabiting ancestor for mutualistic and pathogen-rich fungal lineages, Studies in Mycology, vol. 61 (2008), pp. 111-119 .
  30. Amtoft, A., Lutzoni, F. and Miadlikowska, J., Dermatocarpon (Verrucariaceae) in the Ozark Highlands, North America, The Bryologist, vol. 111 (2008), pp. 1-40 .
  31. Otalora, M. A. G., Martinez, I., Molina, C., Aragon, G., and Lutzoni, F., Phylogenetic relationships and taxonomy of the Leptogium lichenoides group (Collemataceae, Ascomycota) in Europe, Taxon, vol. 57 (2008), pp. 907-921 .
  32. Savic, S., Tibell, L., Gueidan, C., and Lutzoni, F., Molecular phylogeny and systematics of Polyblastia (Verrucariaceae, Eurotiomycetes) and allied genera, Mycological Research, vol. 112 (2008), pp. 1307-1318 .
  33. Hibbett, D. S., Binder, M., Bischoff, J. F., Blackwell, M., Cannon, P. F., Eriksson, O., Huhndorf, S., James, T., Kirk, P. M., Lücking, R., Lumbsch, T., Lutzoni, F., Matheny, P. B., McLaughlin, D. J., Powell, M. J., Redhead, S., Schoch, C. L., Spatafora, J. W., Stalpers, J. A., Vilgalys, R., Aime, M. C., Aptroot, A., Bauer, R., Begerow, D., Benny, G. L., Castlebury, L. A., Crous, P. W., Dai, Y.-C., Gams, W., Geiser, D. M., Griffith, G. W., Gueidan, C., Hawksworth, D. L., Hestmark, G., Hosaka, K., Humber, R. A., Hyde, K., Koljalg, U., Kurtzman, C. P., Larsson, K.-H., Lichtward, R., Longcore, J., Miadlikowska, J., Miller, A., Monclavo, J.-M., Mozley-Standridge, S., Oberwinkler, F., Parmasto, E., Reeb, V., Rogers, J. D., Roux, C., Ryvarden, L., Sampaio, J. P., Schuessler, A., Sugiyama, J., Thorn, R. G., Tibell, L., Untereiner, W. A., Walker, C., Wang, Z., Weir, A., Weiss, M., White, M., Winka, K., Yao, Y.-J., Zhang, N., A higher-level phylogenetic classification of the Fungi, Mycological Research, vol. 111 (2007), pp. 509-547 .
  34. Litaker, R. W., Vandersea, M. W., Kibler, S. R., Reece, K. S., Stokes, N. A., Lutzoni, F. M., Yonish, B. A., West, M. A., Black, M. N. D., and Tester, P. A., Recognizing dinoglagellate species using ITS rDNA sequences, Journal of Phycology, vol. 43 (2007), pp. 344-355 .
  35. Gueidan, C., Roux, C., and Lutzoni, F., Using a multigene analysis to assess generic delineation and character evolution in the Verrucariaceae (Verrucariales, Ascomycota)., Mycological Research, vol. 110 (2007), pp. 1147-1170 .
  36. Higgins, K. L., Arnold, A. E., Miadlikowska, J. M., Sarvate, S. D., and Lutzoni, F., Phylogenetic relationships, host affinity, and geographic structure of boreal and arctic endophytes from three major plant lineages, Molecular Phylogenetics and Evolution, vol. 42 (2007), pp. 543-555 .
  37. Arnold, A. E., Henk, D. A., Eells, R. L., Lutzoni, F. and Vilgalys, R., Diversity and phylogenic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR, Mycologia, vol. 99 (2007), pp. 185-206 .
  38. Kauff, F., Cox, C., and Lutzoni, F., WASABI: An Automated Sequence Processing System for Multi-Gene Phylogenies, Systematic Biology, vol. 56 (2007), pp. 523-531 .
  39. Arnold, A. E. and Lutzoni F., Diversity and host range of foliar fungal endophytes: Are tropical leaves biodiversity hotspots?, Ecology, vol. 88 (2007), pp. 541-549 .
  40. Reeb, V., Haugen, P., Bhattacharya, D. and Lutzoni, F., Evolution of Pleopsidium (lichenized Ascomycota) S943 group I introns and the phylogeography of an intron-encoded putative homing endonuclease, Journal of Molecular Evolution, vol. 64 (2007), pp. 285-298 .
  41. Hofstetter, V., Miadlikowska, J., Kauff, F., and Lutzoni, F., Phylogenetic comparison of protein-coding versus ribosomal RNA-coding sequence data: A case study of the Lecanoromycetes (Ascomycota)., Molecular Phylogenetics and Evolution, vol. 44 (2007), pp. 412-426 .
  42. Rydholm, C., Dyer, P. S., and Lutzoni, F., DNA sequence characterization and molecular evolution of MAT1 and MAT2 mating-type loci of the self-compatible ascomycete mold Neosartorya fischeri., Eukaryotic Cell, vol. 6 (2007), pp. 868-874 .
  43. Fernández, F. A., Miller, A. N., Huhndorf, S. M., Lutzoni, F. M., and Zoller, S., Systematics of the genus Chaetosphaeria and its allied genera: morphological and phylogenetic diversity in north temperate and neotropical taxa, Mycologia, vol. 98 (2006), pp. 121-130 .
  44. Rydholm, C., Szakacs, G., and Lutzoni, F., Low genetic variation and no detectable population structure in Aspergillus fumigatus compared to the closely related Neosartorya species, Eukaryotic Cell, vol. 5 (2006), pp. 650-657 .
  45. James, T. Y., Kauff, F., Schoch, C., Matheny, P. B., Hofstetter, V., Cox, C. J., Celio, G., Gueidan, C., Fraker, E., Miadlikowska, J., Lumbsch, T., Rauhut, A., Reeb, V., Arnold, A. E., Amtoft, A., Stajich, J. E., Hosaka, K., Sung, G.-H., Johnson, D., O’Rourke, B., Binder, M., Curtis, J. M., Slot, J. C., Wang, Z., Wilson, A. W., Schüßler, A., Longcore, J. E., O’Donnell, K., Mozley-Standridge, S., Porter, D., Letcher, P. M., Powell, M. J., Taylor, J. W., White, M. M., Griffith, G. W., Davies, D. R., Sugiyama, J., Rossman, A. Y., Rogers, J. D., Pfister, D. H., Hewitt, D., Hansen, K., Hambleton, S., Shoemaker, R. A., Kohlmeyer, J., Volkmann-Kohlmeyer, B., Spotts, R. A., Serdani, M., Crous, P. W., Hughes, K. W., Matsuura, K., Langer, E., Langer, G., Untereiner, W. A., Lücking, R., Büdel, B., Geiser, D. M., Aptroot, A., Buck, W. R., Cole, M. S., Diederich, P., Printzen, C., Schmitt, I., Schultz, M., Yahr, R., Zavarzin, A., Hibbett, D. H., Lutzoni, F., McLaughlin, D. J., Spatafora, J. W., Vilgalys, R., Reconstructing the early evolution of the Fungi using a six-gene phylogeny, Nature, vol. 443 (2006), pp. 818-822 .
  46. Miadlikowska, J., Kauff, F., Hofstetter, V., Fraker, E., Grube, M., Hafellner, J., Reeb, V., Hodkinson, B. P., Kukwa, M., Lücking, R., Hestmark, G., Otalora, M. A. G., Rauhut, A., Büdel, B., Scheidegger, C., Timdal, I., Stenroos, S., Brodo, I., Perlmutter, G., Ertz, D., Diederich, P., Lendemer, J. C., Tripp, E., Yahr, R., May, P., Gueidan, C., Arnold, A. E., Robertson, C., and Lutzoni, F., New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA- and two protein-coding genes, Mycologia, vol. 98 (2006), pp. 1090-1103 .
  47. Geiser, D. M., Gueidan, Miadlikowska, J., Kauff, F., Hofstetter, V., Fraker, E., Schoch, C. L., Tibell, L., Untereiner, W. A., Aptroot, A., Lutzoni, F., Eurotiomycetes: Eurotiomycetidae and Chaetothyriomycetidae, Mycologia, vol. 98 (2006), pp. 1055-1066 .
  48. Spatafora, J. W., Sung, G.-H., Johnson, D., O’Rourke, B., Serdani, M., Spotts, R., Lutzoni, F., Hofstetter, V., Aptroot, A., Roux, C., Miller, A., Geiser, D., Hafellner, J., Hestmark, G., Arnold, A. E., Büdel, B., Rauhut, A., Untereiner, W. A., Cole, M. S., Scheidegger, C., Schultz, M., Sipman, H., Schoch, C., A five-gene phylogeny of Pezizomycotina, Mycologia, vol. 98 (2006), pp. 1020-1030 .
  49. Bhattacharya, D., Reeb, V., Simon, D., and Lutzoni, F., Phylogenetic analyses suggest reverse splicing spread of group I introns in fungal ribosomal DNA, BMC Evolutionary Biology, vol. 5 no. 68 (2005) .
  50. Paoletti, M., Rydholm, C., Schwier, E., Anderson, M. J., Szakacs, G., Lutzoni, F., Debeaupuis, J.-P, Latgé, J.-P., Denning, D. W., Dyer, P. S., Evidence for sexuality in the opportunistic fungal pathogen Aspergillus fumigatus., Current Biology, vol. 15 (2005), pp. 1242-1248 .
  51. O’Brien, H., Miadlikowska, J., and Lutzoni, F., Assessing host specialization in symbiotic Cyanobacteria associated with four closely related species of the lichen fungus Peltigera, European Journal of Phycology, vol. 40 (2005), pp. 363-378 .
  52. Miadlikowska, J. and Lutzoni, F., Phylogenetic classification of peltigeralean fungi (Peltigerales, Ascomycota) based on ribosomal RNA small and large subunits, American Journal of Botany, vol. 91 (2004), pp. 449-464 .
  53. Haugen, P., Reeb, V., Lutzoni, F., Bhattacharya, D., The evolution of homing endonuclease genes and group I introns in nuclear rDNA., Molecular Biology and Evolution, vol. 21 (2004), pp. 105-116 .
  54. Reeb, V., Lutzoni, F., and Roux, C, Contribution of RPB2 to multilocus phylogenetic studies of the Pezizomycotina (euascomycetes, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory, Molecular Phylogenetics and Evolution, vol. 32 (2004), pp. 1036-1060 .
  55. Lutzoni, F., Kauff, F., Cox, C., McLaughlin, D., Celio, G., Dentinger, B., Padamsee, M., Hibbett, D., James, T., Baloch, E., Grube, M., Reeb, V., Hofstetter, V., Shcoch, C., Arnold, A. E., Miadlikowska, J., Spatafora, J., Johnson, D., Hambleton, S., et al, Assembling the fungal tree of life: Progress, classification, and evolution of subcellular traits, American Journal of Botany, vol. 91 (2004), pp. 1446-1480 .
  56. Alfaro, M, Zoller, S, and Lutzoni, F., Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence, Molecular Biology and Evolution, vol. 20 (2003), pp. 255-266 .
  57. McDonald, T., Miadlikowska, J., and Lutzoni, F., The lichen genus Sticta in the Great Smoky Mountains: A phylogenetic study of morphological, chemical, and molecular data, The Bryologist, vol. 106 (2003), pp. 61-79 .
  58. Gaya, E., Lutzoni, F., Zoller, S., and Navarro-Rosinés, P., Phylogenetic study of Fulgensia and allied Caloplaca, and Xanthoria species (Teloschistaceae, lichen-forming Ascomycota), American Journal of Botany, vol. 90 (2003), pp. 1095-1103 .
  59. Zoller, S., and Lutzoni, F., Slow algae, fast fungi: Exceptionally high nucleotide substitution rate differences between lichenized fungi Omphalina and their symbiotic green algae Coccomyxa, Molecular Phylogenetics and Evolution, vol. 29 (2003), pp. 629-640 .
  60. Søchting, U. and Lutzoni, F., Molecular phylogenetic studies at the generic boundary between the lichen-forming fungi Caloplaca and Xanthoria (Ascomycota, Teloschistaceae), Mycological Research, vol. 107 (2003), pp. 1266-1276 .
  61. Miadlikowska, J., Lutzoni, F., Goward, T., Zoller, S. and Posada, D., New approach to an old problem: Incorporating signal from gap-rich regions of ITS and nrDNA large subunit into phylogenetic analyses to resolve the Peltigera canina species complex, Mycologia, vol. 95 (2003), pp. 1181-1203 .
  62. Redhead, SA, Lutzoni, F, Moncalvo, J-M, and Vilgalys, R., Phylogeny of agarics: partial systematics systematics solutions for core omphalinoid genera in the Agaricales (euagarics)., Mycotaxon, vol. 83 (2002), pp. 19-57 .
  63. Miadlikowska, J., McCune, B., and Lutzoni, F., Pseudocyphellaria perpetua, a new lichen from Western North America, The Bryologist, vol. 105 (2002), pp. 1-10 .
  64. Redhead, SA, Moncalvo, J-M, Vilgalys, R and Lutzoni, F, Phylogeny of agarics: partial systematics solutions for bryophilous omphalinoid agarics outside of the Agaricales (Euagarics), Mycotaxon, vol. 82 (2002), pp. 151-168 .
  65. Barker, F.K. and Lutzoni, F., The utility of the incongruence length difference test., Systematic Biology, vol. 51 (2002), pp. 625-637 .
  66. Kauff, F. and Lutzoni, F., Phylogeny of the Gyalectales and Ostropales (Ascomycota, Fungi): among and within order relationships based on nuclear ribosomal RNA small and large subunits, Molecular Phylogenetics and Evolution, vol. 25 (2002), pp. 138-156 .
  67. O'Donnell, K., Lutzoni, F., Ward, T., and Benny G., Evolutionary relationships among mucoralean fungi (Zygomycota): Evidence for family polyphyly on a large scale, Mycologia, vol. 93 (2001), pp. 286-296 .
  68. F.M. Lutzoni, M. Pagel, and V. Reeb, Major fungal lineages are derived from lichen symbiotic ancestors, Nature, vol. 411 (2001), pp. 937-940 .
  69. Moncalvo, J-M., Lutzoni, F.M., Rehner, S.A., Johnson, J., and Vilgalys, R., Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal, Systematic Biology, vol. 49 (2000), pp. 278-305 .
  70. Wu, Q-X., Mueller, G.M., Lutzoni F.M., Huang, Y-Q. and Guo, S-Y., Phylogenetic and biogeographic relationships of eastern Asain and eastern North American disjunct Suillus species (Fungi)as inferred from ITS sequences of nuclear ribosomal RNA ITS sequences, Molecular Phylogenetics and Evolution, vol. 17 (2000), pp. 37-47 .
  71. Miadlikowska, J., and Lutzoni, F., Phylogenetic revision of the genus Peltigera (lichen-forming ascomycetes) based on morphological, chemical, and large subunit nuclear ribosomal DNA data, International Joukrnal of Plant Sciences, vol. 161 (2000), pp. 925-958 .
  72. F.M. Lutzoni, Wagner, P., Reeb, V., and Zoller, S., Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology, Systematic Biology, vol. 49 (2000), pp. 628-651 .
  73. Bhattacharya, D., Lutzoni, F., Reeb, V., Simon, D., Nason, J., Fernandez, F., Widespread occurrence of spliceosomal introns in the rDNA genes of ascomycetes, Molecular Biology and Evolution, vol. 17 (2000), pp. 1971-1984 .
  74. Zoller, S., Lutzoni F., and Scheidegger, C., Genetic variability within and among populations of the threatened foliose lichen Lobaria pulmonaria (L.), Molecular Ecology, vol. 8 (1999), pp. 2049-2060, Hoffm. in Switzerland. .
  75. Lutzoni, F., and Barker, F. K, Sampling confidence envelopes of phylogenetic trees for combinability testing: A reply to Rodrigo, Systematic Biology, vol. 48 (1999), pp. 596-603 .
  76. Fernandez, A., F. Lutzoni and S. M. Huhndorf, Teleomorph-anamorph connections: the new pyrenomycetous genus Carpoligna and its Pleurothecium anamorph, Mycologia, vol. 91 (1999), pp. 251-262 .
  77. Lutzoni, F., and Pagel, M, Accelerated evolution as a consequence of transitions to mutualism, Proc. Natl. Acad. Sci, vol. 94 (1997), pp. 11422-11427 .
  78. Lutzoni, F, Phylogeny of lichen- and non lichen-forming omphalinoid mushrooms and the utility of testing for combinability among multiple data sets, Systematic Biology, vol. 46 (1997), pp. 373-406 (journal cover.) .
  79. Lutzoni, F., and Vilgalys, R, Omphalina (Basidiomycota, Agaricales) as a model system for the study of coevolution in lichenized fungi, Special Issue of Cryptogamic Botany, vol. 5 (1995b), pp. 82-97 .
  80. Lutzoni, F., and Brodo, I. M, A generic redelimitation of the Ionaspis-Hymenelia complex (lichenized Ascomycotina), Systematic Botany, vol. 20 (1995), pp. 224-258 .
  81. Lutzoni, F., and Vilgalys, R, ntegration of morphological and molecular datasets in estimating fungal phylogenies, Canadian Journal of Botany, vol. 73(Suppl. 1) (1995a), pp. S649-S659 .
  82. Lutzoni, F, Ionaspis alba (Ascomycotina, Hymeneliaceae), a new lichen species from eastern North America, The Bryologist, vol. 97 no. 4 (1994), pp. 393-395 .
  83. Lutzoni, F. M. and Brodo, I. M, Proposal to conserve the name Gyalecta suaveolens Fr. (lichenized Ascomycota) with a conserved type, Taxon, vol. 43 (1994), pp. 657-659 .
  84. Grandtner, M. M. and Lutzoni, F, References on the vegetation of Québec, Excerpta Botanica Sec. B. Bd, vol. 29 no. 1 (1991), pp. 1-24 .
  85. Sirois, L., Lutzoni, F. and Grandtner, M. M, Les lichens sur serpentine et amphibolite du plateau du mont Albert, Gaspésie, Québec, Canadian Journal of Botany, vol. 66 (1988), pp. 851-862 .

Papers Submitted

  1. Sliwa, L., Miadlikowska, J., Redelings, B. D., Molnar, K., Lutzoni, F., Are morphospecies from the Lecanora dispersa group (lichenized Lecanoromycetes, Pezizomycotina) monophyletic?, The Bryologist (2012) .
  2. Gazis, R., Miadlikowska, J., Lutzoni, F., Arnold, E. and Chaverri, P., Culture-based study of endophytes associated with rubber trees in Peru reveals a new class of Pezizomycotina (Xylonomycetes), Molecular Phylogenetics and Evolution (2012) .

Book Reviews

  1. Lutzoni, F. [Review] Stefan Ekman in Opera Botanica 127, 148 pp., 1996., The corticolous and lignicolous species of Bacidia and Bacidina in North America, The Bryologist, vol. 102 (1999), pp. 165-166 .

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