Publications of Katia Koelle    :chronological  combined  bibtex listing:

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Papers Published

  1. D.A. Rasmussen, O. Ratmann, K. Koelle, Inference for nonlinear epidemiological models using genealogies and time series, PLoS Computational Biology, vol. 7 no. 8 (2011), pp. e1002136 .
  2. K. Koelle, O. Ratmann, D.A. Rasmussen, V. Pasour, J. Mattingly, A dimensionless number for understanding the evolutionary dynamics of antigenically variable RNA viruses, Proceedings of the Royal Society, Series B, vol. 278 (2011), pp. 3723–3730 .
  3. K. Koelle, D.A. Rasmussen, Rates of coalescence for epidemiological models at equilibirum, Journal of the Royal Society, Interface (2011) [doi] .
  4. Koelle, K., Khatri, P., Kamradt, M., Kepler, T., A two-tiered model for studying the ecological and evolutionary dynamics of rapidly evolving viruses, with an application to influenza, Journal of the Royal Society, Interface (2010) .
  5. Koelle. K., The impact of climate on the disease dynamics of cholera, Clinical Microbiology and Infection, vol. 15 no. s1 (2009), pp. 29-31 .
  6. Koelle, K., Kamradt, M., Pascual, M., Understanding the dynamics of rapidly evolving pathogens through modeling the tempo of antigenic change: influenza as a case study, Epidemics, vol. 1 (2009), pp. 129-137 .
  7. Pascual, M., Cazelles, B., Bouma, M., Chaves, L., Koelle, K., Shifting patterns: malaria dynamics and rainfall variability in an African highland, Proceedings of the Royal Society, Series B, Biological Sciences, vol. 275 (2008), pp. 123-132 .
  8. Cobey, S., Koelle, K., Capturing escape in infectious disease dynamics, Trends in Ecology and Evolution, vol. 23 no. 10 (2008), pp. 572-577 .
  9. Nagao, Y., K. Koelle, K., Decreases in dengue transmission may act to increase the incidence of dengue hemorrhagic fever, Proceedings of the National Academy of Sciences, vol. 105 no. 6 (2008), pp. 2238-2243 .
  10. Finkelman, B., Viboud, C., Koelle, K., Ferrari, M., Bharti, N., Grenfell, B., Global Patterns in Seasonal Activity of Influenza A/H3N2, A/H1N1, and B from 1997 to 2005: Viral Coexistence and Latitudinal Gradients, PLoS One, vol. 2 no. 12 (2007), pp. e1296 .
  11. Koelle, K., Cobey, S., Grenfell, B., Pascual, M., Epochal evolution shapes the phylodynamics of interpandemic influenza A (H3N2) in humans, Science, vol. 314 (2006), pp. 1898-1903 .
  12. Koelle, K., Pascual, M., Yunus, M., Serotype cycles in cholera dynamics, Proceedings of the Royal Society, Series B, Biological Sciences, vol. 273 (2006), pp. 2879-2886 .
  13. Pascual, M., Koelle, K., Dobson, A., Hyperinfectivity in Cholera: A New Mechanism for an Old Epidemiological Model?, PLoS Medicine, vol. 3 no. 6 (2006), pp. e280 .
  14. K. Koelle, X. Rodó, M. Pascual, M. Yunus, G. Mostafa, Refractory periods to climate forcing in cholera dynamics, Nature, vol. 436 (2005), pp. 696-700 .
  15. K. Koelle, M. Pascual, M. Yunus, Pathogen adaptation to seasonal forcing and climate change, Proceedings of the Royal Society, Series B, Biological Sciences, vol. 272 (2005), pp. 971-977 .
  16. K. Koelle, J. Vandermeer, Dispersal-induced desynchronization: from metapopulations to metacommunities, Ecology Letters, vol. 8 no. 2 (2005), pp. 167-175 .
  17. C. Buckee, K. Koelle, M. Mustard, S. Gupta, The effects of host contact network structure on pathogen diversity and strain structure, Proceedings of the National Academy of Sciences, vol. 101 no. 29 (2004), pp. 10839-10844 .
  18. K. Koelle, M. Pascual, Disentangling extrinsic from intrinsic factors in disease dynamics: a nonlinear time series approach with an application to cholera, The American Naturalist, vol. 163 no. 6 (2004), pp. 901-913 .
  19. S.M. Blower, K. Koelle, D. E. Kirschner, J. Mills, Live attenuated HIV vaccines: Predicting the tradeoff between efficacy and safety, Proceedings of the National Academy of Sciences, vol. 98 no. 6 (2001), pp. 3618-3623 .
  20. S.M. Blower, K., Koelle, T. Lietman, Antibiotic resistance- to treat…, Nature Medicine, vol. 5 no. 4 (1999), pp. 358 .

Papers Accepted

  1. WHO‐VMI Dengue Vaccine Modeling Group (includes K. Koelle), Assessing the Potential of a Candidate Dengue Vaccine with Mathematical Modeling, PLoS Neglected Tropical Diseases (Policy Platform) (2011) .
  2. N. Arinaminpathy, O. Ratmann, K. Koelle, S.L. Epstein, G.E. Prince, C. Viboud, M. Miller, B. Grenfell, Impact of cross-protective vaccines on epidemiological and evolutionary dynamics of influenza, PNAS (2011) .

Papers Submitted

  1. S. Wu, K. Koelle, A. Rodrigo, Coalescent entanglement and the conditional dependence of the times-to-common-ancestry of mutually exclusive pairs of individuals, Journal of Heredity (2011) .
  2. S. Luo, K. Koelle, The eco-evolutionary dynamics of infectious diseases, The American Naturalist (2011) .
  3. S. Luo, M. Reed, J.C. Mattingly, K. Koelle, The impact of host immune status on the within-host and population dynamics of antigenic immune escape, Journal of the Royal Society, Interface (2011) .

Book Chapter

  1. R. Savit, K. Koelle, W. Treynor, R. Gonzalez, Man and Superman: Human Limitations, Innovation, and Emergence in Resource Competition, in Collectives and the Design of Complex Systems, edited by Tumer, K. & Wolpert, D. (2004), Springer-Verlag .
  2. S.M. Blower, K. Koelle, J. Mills, Health policy modeling: epidemic control, HIV vaccines and risky behavior, in Quantitative Evaluation of HIV Prevention Programs, edited by E. H. Kaplan & R. Brookmeyer (2002), Yale University Press .

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