Publications of Marcy K. Uyenoyama    :chronological  alphabetical  combined  bibtex listing:

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Books

  1. R. S. Singh and M. K. Uyenoyama, The Evolution of Population Biology (2004), Cambridge University Press .

Papers Published

  1. Uyenoyama, MK; Takebayashi, N; Kumagai, S, Inductive determination of allele frequency spectrum probabilities in structured populations., Theoretical Population Biology (January, 2019) [doi]  [abs].
  2. Uyenoyama, MK; Takebayashi, N, Evolution of the sex ratio and effective number under gynodioecy and androdioecy., Theoretical Population Biology, vol. 118 (December, 2017), pp. 27-45 [doi]  [abs].
  3. Uyenoyama, M; Takebayashi, N, Evolution of the sex ratio and effective number under gynodioecy and androdioecy (March, 2017) [doi]  [abs].
  4. Redelings, BD; Kumagai, S; Tatarenkov, A; Wang, L; Sakai, AK; Weller, SG; Culley, TM; Avise, JC; Uyenoyama, MK, A Bayesian Approach to Inferring Rates of Selfing and Locus-Specific Mutation., Genetics, vol. 201 no. 3 (November, 2015), pp. 1171-1188 [doi]  [abs].
  5. Kumagai, S; Uyenoyama, MK, Genealogical histories in structured populations., Theoretical Population Biology, vol. 102 (June, 2015), pp. 3-15 [doi]  [abs].
  6. Uyenoyama, MK, Editor's Report for Volume 28 (2011)., Molecular Biology and Evolution, vol. 30 no. 1 (January, 2013), pp. 236-237 [23171860], [doi] .
  7. Uyenoyama, MK, Editor's Report for Volume 27 (2010), Molecular Biology and Evolution, vol. 29 no. 5 (May, 2012), pp. 1493-1494, Oxford University Press (OUP) [doi] .
  8. Wolfe, K; Wayne, ML; Makova, K; Steen, TY; Uyenoyama, M; Takahata, N, SMBE proposal to the government of Japan, Molecular Biology and Evolution, vol. 29 no. 1 (2012), pp. 441- [msr209], [doi] .
  9. Kumagai, S; Uyenoyama, MK, A method for computing the exact distribution of speciation times and internode lengths in genealogical histories, Theoretical Population Biology (2012) .
  10. Fusco, D; Uyenoyama, MK, Effects of polymorphism for locally adapted genes on rates of neutral introgression in structured populations., Theoretical Population Biology, vol. 80 no. 2 (September, 2011), pp. 121-131 [21718712], [doi]  [abs].
  11. Fusco, D; Uyenoyama, MK, Sex-specific incompatibility generates locus-specific rates of introgression between species., Genetics, vol. 189 no. 1 (September, 2011), pp. 267-288 [21705749], [doi]  [abs].
  12. Uyenoyama, MK, Molecular Biology and Evolution: Editor's report, Molecular Biology and Evolution, vol. 27 no. 12 (December, 2010), pp. 2890-2891, Oxford University Press (OUP) [doi] .
  13. Uyenoyama, MK, Editorial: MBE Editor's Report, Molecular Biology and Evolution, vol. 27 no. 3 (March, 2010), pp. 742-743, Oxford University Press (OUP) [doi] .
  14. Dutheil, JY; Ganapathy, G; Hobolth, A; Mailund, T; Uyenoyama, MK; Schierup, MH, Ancestral population genomics: the coalescent hidden Markov model approach., Genetics, vol. 183 no. 1 (September, 2009), pp. 259-274 (doi: 10.1534/genetics.109.103010.) [19581452], [doi]  [abs].
  15. Ganapathy, G; Uyenoyama, MK, Site frequency spectra from genomic SNP surveys., Theoretical Population Biology, vol. 75 no. 4 (June, 2009), pp. 346-354 [19371756], [doi]  [abs].
  16. Hobolth, A; Uyenoyama, MK; Wiuf, C, Importance sampling for the infinite sites model., Statistical Applications in Genetics and Molecular Biology, vol. 7 no. 1 (January, 2008), pp. Article32 [18976228], [doi]  [abs].
  17. A Hobolth, MK Uyenoyama, C Wiuf, Importance sampling for the infinite sites model., Statistical applications in genetics and molecular biology, vol. 7 no. 1 (2008), pp. Article32 [doi]  [abs].
  18. A Hobolth, MK Uyenoyama, C Wiuf, Importance sampling for the infinite sites model., Statistical applications in genetics and molecular biology, vol. 7 no. 1 (2008), pp. Article32 [doi]  [abs].
  19. Leman, SC; Uyenoyama, MK; Lavine, M; Chen, Y, The evolutionary forest algorithm., Bioinformatics (Oxford, England), vol. 23 no. 15 (August, 2007), pp. 1962-1968 [17519247], [doi]  [abs].
  20. Leman, SC; Chen, Y; Stajich, JE; Noor, MAF; Uyenoyama, MK, Likelihoods from summary statistics: recent divergence between species., Genetics, vol. 171 no. 3 (November, 2005), pp. 1419-1436 [16143628], [doi]  [abs].
  21. Newbigin, E; Uyenoyama, MK, The evolutionary dynamics of self-incompatibility systems., Trends in Genetics : Tig, vol. 21 no. 9 (September, 2005), pp. 500-505 [16023253], [doi]  [abs].
  22. Uyenoyama, MK, Evolution under tight linkage to mating type., The New Phytologist, vol. 165 no. 1 (January, 2005), pp. 63-70 [15720621], [doi]  [abs].
  23. S. C. Leman, and Y. Chen, and J. E. Stajich, and M. A. F. Noor, and M.K. Uyenoyama, Likelihoods from summary statistics: Recent divergence between species, Genetics, vol. 171 (2005), pp. 1419-1436 .
  24. Vallejo-Marín, M; Uyenoyama, MK, On the evolutionary costs of self-incompatibility: incomplete reproductive compensation due to pollen limitation., Evolution; International Journal of Organic Evolution, vol. 58 no. 9 (September, 2004), pp. 1924-1935 [15521452], [doi]  [abs].
  25. Takebayashi, N; Newbigin, E; Uyenoyama, MK, Maximum-likelihood estimation of rates of recombination within mating-type regions., Genetics, vol. 167 no. 4 (August, 2004), pp. 2097-2109 [15342543], [doi]  [abs].
  26. Uyenoyama, MK; Takebayashi, N, A simple method for computing exact probabilities of mutation numbers., Theoretical Population Biology, vol. 65 no. 3 (May, 2004), pp. 271-284 [15066423], [doi]  [abs].
  27. M.K. Uyenoyama and N. Takebayashi, Genus-specific diversification of mating types, in The Evolution of Population Biology, edited by R. S. Singh and M. K. Uyenoyama (2004), pp. 254-271, Cambridge University Press .
  28. Takebayashi, N; Brewer, PB; Newbigin, E; Uyenoyama, MK, Patterns of variation within self-incompatibility loci., Molecular Biology and Evolution, vol. 20 no. 11 (November, 2003), pp. 1778-1794 [12885955], [doi]  [abs].
  29. Uyenoyama, MK, Genealogy-dependent variation in viability among self-incompatibility genotypes., Theoretical Population Biology, vol. 63 no. 4 (June, 2003), pp. 281-293 [12742174]  [abs].
  30. Uyenoyama, MK; Zhang, Y; Newbigin, E, On the origin of self-incompatibility haplotypes: transition through self-compatible intermediates., Genetics, vol. 157 no. 4 (April, 2001), pp. 1805-1817 [11290732]  [abs].
  31. M.K. Uyenoyama, Outbreeding, in Encyclopedia of Genetics, edited by S. Brenner and J. Miller (2001), Academic Press, London .
  32. Uyenoyama, MK, Mutational origin of new mating type specificities in flowering plants., Genes & Genetic Systems, vol. 75 no. 6 (December, 2000), pp. 305-311 [11280004]  [abs].
  33. Uyenoyama, MK, Evolutionary dynamics of self-incompatibility alleles in Brassica., Genetics, vol. 156 no. 1 (September, 2000), pp. 351-359 [10978298]  [abs].
  34. Uyenoyama, MK; Newbigin, E, Evolutionary dynamics of dual-specificity self-incompatibility alleles., The Plant Cell, vol. 12 no. 3 (March, 2000), pp. 310-312 [10715317], [doi] .
  35. Uyenoyama, MK, A prospectus for new developments in the evolutionary theory of self-incompatibility, Annals of Botany, vol. 85 no. SUPPL. A (January, 2000), pp. 247-252, Oxford University Press (OUP) [doi]  [abs].
  36. M.K. Uyenoyama, The evolution of breeding systems, in Evolutionary Genetics from Molecules to Morphology, pp.300-316, edited by RS Singh and C Krimbas (2000), Cambridge University Press, New York .
  37. Uyenoyama, MK, Evolutionary dynamics of self-incompatibility systems in flowering plants, J. Reprod. Dev., vol. 46 (2000), pp. 35-36 .
  38. Uyenoyama, MK, Genealogical structure among alleles regulating self-incompatibility in natural populations of flowering plants., Genetics, vol. 147 no. 3 (November, 1997), pp. 1389-1400 [9383079]  [abs].
  39. Richman, AD; Uyenoyama, MK; Kohn, JR, Allelic diversity and gene genealogy at the self-incompatibility locus in the Solanaceae., Science (New York, N.Y.), vol. 273 no. 5279 (August, 1996), pp. 1212-1216 [8703052]  [abs].
  40. Richman, AD; Uyenoyama, MK; Kohn, JR, S-allele diversity in a natural population of Physalis crassifolia (Solanaceae) (ground cherry) assessed by RT-PCR., Heredity, vol. 76 ( Pt 5) (May, 1996), pp. 497-505 [8666546]  [abs].
  41. Richman, AD; Uyenoyama, MK; Kohn, JR, S-allele diversity in a natural population of Physalis crassifolia (Solanaceae) (ground cherry) assessed by RT-PCR., Heredity, vol. 76 (1996), pp. Pt 5/-  [abs].
  42. Richman, AD; Kao, TH; Schaeffer, SW; Uyenoyama, MK, S-allele sequence diversity in natural populations of Solanum carolinense (Horsenettle)., Heredity, vol. 75 ( Pt 4) (October, 1995), pp. 405-415 [7591834]  [abs].
  43. Uyenoyama, MK, A generalized least-squares estimate for the origin of sporophytic self-incompatibility., Genetics, vol. 139 no. 2 (February, 1995), pp. 975-992 [7713446]  [abs].
  44. Thrall, PH; Biere, A; Uyenoyama, MK, Frequency-dependent disease transmission and the dynamics of the Silene-ustilago host-pathogen system, The American Naturalist, vol. 145 no. 1 (January, 1995), pp. 43-62, University of Chicago Press [doi] .
  45. Uyenoyama, MK; Waller, DM, Coevolution of self-fertilization and inbreeding depression. III. Homozygous lethal mutations at multiple loci., Theoretical Population Biology, vol. 40 no. 2 (October, 1991), pp. 173-210 [1788823]  [abs].
  46. Uyenoyama, MK; Waller, DM, Coevolution of self-fertilization and inbreeding depression. II. Symmetric overdominance in viability., Theoretical Population Biology, vol. 40 no. 1 (August, 1991), pp. 47-77 [1948771]  [abs].
  47. Uyenoyama, MK; Waller, DM, Coevolution of self-fertilization and inbreeding depression. I. Mutation-selection balance at one and two loci., Theoretical Population Biology, vol. 40 no. 1 (August, 1991), pp. 14-46 [1948770]  [abs].
  48. Uyenoyama, MK, On the evolution of genetic incompatibility systems. VI. A three-locus modifier model for the origin of gametophytic self-incompatibility., Genetics, vol. 128 no. 2 (June, 1991), pp. 453-469 [2071024]  [abs].
  49. Bengtsson, BO; Uyenoyama, MK, Evolution of the segregation ratio: modification of gene conversion and meiotic drive., Theoretical Population Biology, vol. 38 no. 2 (October, 1990), pp. 192-218 [2247852]  [abs].
  50. Uyenoyama, MK; Bengtsson, BO, On the origin of meiotic reproduction: a genetic modifier model., Genetics, vol. 123 no. 4 (December, 1989), pp. 873-885 [2612898]  [abs].
  51. Uyenoyama, MK, On the evolution of genetic incompatibility systems. V. Origin of sporophytic self-incompatibility in response to overdominance in viability., Theoretical Population Biology, vol. 36 no. 3 (December, 1989), pp. 339-365 [2609281], [doi]  [abs].
  52. Uyenoyama, MK, Coevolution of the major histocompatibility complex and the t-complex in the mouse. I. Generation and maintenance of high complementarity associations., Genetics, vol. 121 no. 1 (January, 1989), pp. 139-151 [2917711]  [abs].
  53. Uyenoyama, MK, Coevolution of the major histocompatibility complex and the t-complex in the mouse. II. Modification of response to sharing of histocompatibility antigens., Genetics, vol. 121 no. 1 (January, 1989), pp. 153-161 [2917712]  [abs].
  54. Uyenoyama, MK, On the evolution of genetic incompatibility systems. IV. Modification of response to an existing antigen polymorphism under partial selfing., Theoretical Population Biology, vol. 34 no. 3 (December, 1988), pp. 347-377 [3238621]  [abs].
  55. Uyenoyama, MK, On the evolution of genetic incompatibility systems. III. Introduction of weak gametophytic self-incompatibility under partial inbreeding., Theoretical Population Biology, vol. 34 no. 1 (August, 1988), pp. 47-91 [3232118]  [abs].
  56. Uyenoyama, MK, On the evolution of genetic incompatibility systems. II. Initial increase of strong gametophytic self-incompatibility under partial selfing and half-sib mating, The American Naturalist, vol. 131 no. 5 (January, 1988), pp. 700-722, University of Chicago Press [doi]  [abs].
  57. Uyenoyama, MK, Inbreeding and the cost of meiosis: the evolution of selfing in populations practising biparental inbreeding., Evolution; International Journal of Organic Evolution, vol. 40 no. 2 (January, 1986), pp. 388-404, JSTOR [doi]  [abs].
  58. Uyenoyama, MK, Quantitative models of hybrid dysgenesis: rapid evolution under transposition, extrachromosomal inheritance, and fertility selection., Theoretical Population Biology, vol. 27 no. 2 (April, 1985), pp. 176-201 [3927502], [doi]  [abs].
  59. Uyenoyama, MK, On the evolution of parthenogenesis. II. Inbreeding and the cost of meiosis., Evolution; International Journal of Organic Evolution, vol. 39 no. 6 (January, 1985), pp. 1194-1206, JSTOR [doi]  [abs].
  60. Uyenoyama, MK, Inbreeding and the Evolution of Altruism Under Kin Selection: Effects on Relatedness and Group Structure, Evolution; International Journal of Organic Evolution, vol. 38 no. 4 (July, 1984), pp. 778-778, JSTOR [Gateway.cgi], [doi] .
  61. Uyenoyama, MK, On the Evolution of Parthenogenesis: A Genetic Representation of the "Cost of Meiosis", Evolution; International Journal of Organic Evolution, vol. 38 no. 1 (January, 1984), pp. 87-87, JSTOR [Gateway.cgi], [doi] .
  62. Uyenoyama, MK; Bengtsson, BO, Towards a genetic theory for the evolution of the sex ratio. III. Parental and sibling control of brood investment ratio under partial sib-mating., Theoretical Population Biology, vol. 22 no. 1 (August, 1982), pp. 43-68 [6890720] .
  63. Uyenoyama, MK; Feldman, M, Population genetic theory of kin selection. II. The multiplicative model., The American Naturalist, vol. 120 no. 5 (January, 1982), pp. 614-627, University of Chicago Press [doi]  [abs].
  64. UYENOYAMA, MK, THE GENETICS OF ALTRUISM - BOORMAN,SA, LEVITT,PR, Ethology and Sociobiology, vol. 3 no. 1 (1982), pp. 47-48 [Gateway.cgi], [doi] .
  65. Uyenoyama, MK; Feldman, MW; Mueller, LD, Population genetic theory of kin selection: Multiple alleles at one locus., Proceedings of the National Academy of Sciences of the United States of America, vol. 78 no. 8 (August, 1981), pp. 5036-5040 [16593074]  [abs].
  66. Uyenoyama, MK; Feldman, MW; Mueller, LD, Population genetic theory of kin selection: Multiple alleles at one locus, Proceedings of the National Academy of Sciences of the United States of America, vol. 78 no. 8 I (January, 1981), pp. 5036-5040, Proceedings of the National Academy of Sciences [16593074], [doi]  [abs].
  67. Uyenoyama, MK; Feldman, MW, On relatedness and adaptive topography in kin selection, Theoretical Population Biology, vol. 19 no. 1 (January, 1981), pp. 87-123, Elsevier BV [doi] .
  68. Uyenoyama, MK; Bengtsson, BO, Towards a genetic theory for the evolution of the sex ratio II. Haplodiploid and diploid models with sibling and parental control of the brood sex ratio and brood size, Theoretical Population Biology, vol. 20 no. 1 (January, 1981), pp. 57-79, Elsevier BV [doi]  [abs].
  69. Uyenoyama, M; Feldman, MW, Theories of kin and group selection: A population genetics perspective, Theoretical Population Biology, vol. 17 no. 3 (1980), pp. 380-414 .
  70. Uyenoyama, MK; Bengtsson, BO, Towards a genetic theory for the evolution of the sex ratio., Genetics, vol. 93 no. 3 (November, 1979), pp. 721-736 [17248977]  [abs].
  71. Uyenoyama, MK, Evolution of altruism under group selection in large and small populations in fluctuating environments, Theoretical Population Biology, vol. 15 no. 1 (January, 1979), pp. 58-85, Elsevier BV [doi]  [abs].
  72. Uyenoyama, M; Feldman, MW; Cavalli-Sforza, LL, Evolutionary effects of contagious and familial transmission, Proceedings of the National Academy of Sciences of the United States of America, vol. 76 no. 1 (1979), pp. 420-424  [abs].
  73. Uyenoyama, MK; Feldman, MW, The genetics of sex ratio distortion by cytoplasmic infection under maternal and contagious transmission: an epidemiological study., Theoretical Population Biology, vol. 14 no. 3 (December, 1978), pp. 471-497 [751271] .

Papers Submitted

  1. Seiji Kumagai and M.K. Uyenoyama, A method for computing the exact distribution of the genealogical history of a sample derived from a structured population, Theoretical Population Biology (2013)  [abs].

Book Chapters

  1. Seiji Kumagai and Marcy K. Uyenoyama, Heterogeneity in neutral divergence across genomic regions induced by sex-specific hybrid incompatibility, in Evolution in the fast lane: Rapidly evolving genes and genetic systems, edited by Rama S. Singh, Jianping Xu, and Rob J. Kulathinal (2012), pp. 31-39, Oxford University Press .

Book Chapter

  1. Vallejo-Marín, M; Uyenoyama, MK, On the evolutionary modification of self-incompatibility: Implications of partial clonality for allelic diversity and genealogical structure, in Self-Incompatibility in Flowering Plants: Evolution, Diversity, and Mechanisms, edited by Vernonica Franklin-Tong (January, 2008), pp. 53-71, Springer Berlin Heidelberg [doi]  [abs].