Publications of Paul M. Magwene    :chronological  alphabetical  combined  bibtex listing:

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Papers Published

  1. Sauters, TJC; Roth, C; Murray, D; Sun, S; Floyd Averette, A; Onyishi, CU; May, RC; Heitman, J; Magwene, PM, Amoeba predation of Cryptococcus: A quantitative and population genomic evaluation of the accidental pathogen hypothesis., PLoS Pathog, vol. 19 no. 11 (November, 2023), pp. e1011763 [doi]  [abs].
  2. Vijayraghavan, S; Kozmin, SG; Strope, PK; Skelly, DA; Magwene, PM; Dietrich, FS; McCusker, JH, RNA viruses, M satellites, chromosomal killer genes, and killer/nonkiller phenotypes in the 100-genomes S. cerevisiae strains., G3 (Bethesda), vol. 13 no. 10 (September, 2023) [doi]  [abs].
  3. Gusa, A; Yadav, V; Roth, C; Williams, JD; Shouse, EM; Magwene, P; Heitman, J; Jinks-Robertson, S, Genome-wide analysis of heat stress-stimulated transposon mobility in the human fungal pathogen Cryptococcus deneoformans., Proc Natl Acad Sci U S A, vol. 120 no. 4 (January, 2023), pp. e2209831120 [doi]  [abs].
  4. Priest, SJ; Yadav, V; Roth, C; Dahlmann, TA; Kück, U; Magwene, PM; Heitman, J, Uncontrolled transposition following RNAi loss causes hypermutation and antifungal drug resistance in clinical isolates of Cryptococcus neoformans., Nat Microbiol, vol. 7 no. 8 (August, 2022), pp. 1239-1251 [doi]  [abs].
  5. Sun, S; Roth, C; Floyd Averette, A; Magwene, PM; Heitman, J, Epistatic genetic interactions govern morphogenesis during sexual reproduction and infection in a global human fungal pathogen., Proc Natl Acad Sci U S A, vol. 119 no. 8 (February, 2022) [doi]  [abs].
  6. Priest, SJ; Yadav, V; Roth, C; Dahlmann, TA; Kück, U; Magwene, PM; Heitman, J, Rampant transposition following RNAi loss causes hypermutation and antifungal drug resistance in clinical isolates of a human fungal pathogen (August, 2021), Cold Spring Harbor Laboratory [doi]  [abs].
  7. Montoya, MC; Magwene, PM; Perfect, JR, Associations between Cryptococcus Genotypes, Phenotypes, and Clinical Parameters of Human Disease: A Review., J Fungi (Basel), vol. 7 no. 4 (March, 2021) [doi]  [abs].
  8. Roth, C; Murray, D; Scott, A; Fu, C; Averette, AF; Sun, S; Heitman, J; Magwene, PM, Pleiotropy and epistasis within and between signaling pathways defines the genetic architecture of fungal virulence., PLoS Genet, vol. 17 no. 1 (January, 2021), pp. e1009313 [doi]  [abs].
  9. Vijayraghavan, S; Kozmin, SG; Strope, PK; Skelly, DA; Lin, Z; Kennell, J; Magwene, PM; Dietrich, FS; McCusker, JH, Mitochondrial Genome Variation Affects Multiple Respiration and Nonrespiration Phenotypes in Saccharomyces cerevisiae., Genetics, vol. 211 no. 2 (February, 2019), pp. 773-786 [doi]  [abs].
  10. Kayikci, Ö; Magwene, PM, Divergent Roles for cAMP-PKA Signaling in the Regulation of Filamentous Growth in Saccharomyces cerevisiae and Saccharomyces bayanus, G3 (Bethesda, Md.), vol. 8 no. 11 (November, 2018), pp. 3529-3538 [doi]  [abs].
  11. Roth, C; Sun, S; Billmyre, RB; Heitman, J; Magwene, PM, A High-Resolution Map of Meiotic Recombination in Cryptococcus deneoformans Demonstrates Decreased Recombination in Unisexual Reproduction., Genetics, vol. 209 no. 2 (June, 2018), pp. 567-578 [doi]  [abs].
  12. Ehrenreich, IM; Magwene, PM, Genetic Dissection of Heritable Traits in Yeast Using Bulk Segregant Analysis., Cold Spring Harbor protocols, vol. 2017 no. 6 (June, 2017), pp. pdb.prot088989 [doi]  [abs].
  13. Ehrenreich, IM; Magwene, PM, Genetic Analysis of Complex Traits in Saccharomyces cerevisiae., Cold Spring Harbor protocols, vol. 2017 no. 6 (June, 2017), pp. pdb.top077602 [doi]  [abs].
  14. Maxwell, CS; Magwene, PM, When sensing is gambling: An experimental system reveals how plasticity can generate tunable bet-hedging strategies., Evolution; international journal of organic evolution, vol. 71 no. 4 (April, 2017), pp. 859-871 [doi]  [abs].
  15. Skelly, DA; Magwene, PM; Meeks, B; Murphy, HA, Known mutator alleles do not markedly increase mutation rate in clinical Saccharomyces cerevisiae strains., Proceedings. Biological sciences, vol. 284 no. 1852 (April, 2017), pp. 20162672 [doi]  [abs].
  16. Maxwell, CS; Magwene, PM, The quick and the dead: microbial demography at the yeast thermal limit., Molecular ecology, vol. 26 no. 6 (March, 2017), pp. 1631-1640 [doi]  [abs].
  17. Skelly, DA; Magwene, PM, Population perspectives on functional genomic variation in yeast., Briefings in functional genomics, vol. 15 no. 2 (March, 2016), pp. 138-146 [doi]  [abs].
  18. Skelly, DA; Magwene, PM; Stone, EA, Sporadic, Global Linkage Disequilibrium Between Unlinked Segregating Sites., Genetics, vol. 202 no. 2 (February, 2016), pp. 427-437 [doi]  [abs].
  19. Strope, PK; Kozmin, SG; Skelly, DA; Magwene, PM; Dietrich, FS; McCusker, JH, 2μ plasmid in Saccharomyces species and in Saccharomyces cerevisiae., FEMS Yeast Res, vol. 15 no. 8 (December, 2015) [doi]  [abs].
  20. Strope, PK; Skelly, DA; Kozmin, SG; Mahadevan, G; Stone, EA; Magwene, PM; Dietrich, FS; McCusker, JH, The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen., Genome Res, vol. 25 no. 5 (May, 2015), pp. 762-774 [doi]  [abs].
  21. Magwene, PM, Revisiting mortimer's genome renewal hypothesis: Heterozygosity, homothallism, and the potential for adaptation in yeast, Advances in Experimental Medicine and Biology, vol. 781 (January, 2014), pp. 37-48 [24277294], [doi]  [abs].
  22. K Gonzales, O Kayıkçı, DG Schaeffer, PM Magwene, Modeling mutant phenotypes and oscillatory dynamics in the Saccharomyces cerevisiae cAMP-PKA pathway., BMC systems biology, vol. 7 (May, 2013), pp. 40 [doi]  [abs].
  23. Granek, JA; Murray, D; Kayrkçi, Ö; Magwene, PM, The genetic architecture of biofilm formation in a clinical isolate of Saccharomyces cerevisiae., Genetics, vol. 193 no. 2 (February, 2013), pp. 587-600 [23172850], [doi]  [abs].
  24. Magwene, PM; Socha, JJ, Biomechanics of turtle shells: how whole shells fail in compression., Journal of experimental zoology. Part A, Ecological genetics and physiology, vol. 319 no. 2 (February, 2013), pp. 86-98 [23203474], [doi]  [abs].
  25. Granek, JA; Kayıkçı, Ö; Magwene, PM, Pleiotropic signaling pathways orchestrate yeast development., Curr Opin Microbiol, vol. 14 no. 6 (December, 2011), pp. 676-681 [21962291], [doi]  [abs].
  26. Magwene, PM; Willis, JH; Kelly, JK, The statistics of bulk segregant analysis using next generation sequencing., PLoS Comput Biol, vol. 7 no. 11 (November, 2011), pp. e1002255 [22072954], [doi]  [abs].
  27. Lee, HN; Magwene, PM; Brem, RB, Natural variation in CDC28 underlies morphological phenotypes in an environmental yeast isolate., Genetics, vol. 188 no. 3 (July, 2011), pp. 723-730 [21527779], [doi]  [abs].
  28. Magwene, PM; Kayıkçı, Ö; Granek, JA; Reininga, JM; Scholl, Z; Murray, D, Outcrossing, mitotic recombination, and life-history trade-offs shape genome evolution in Saccharomyces cerevisiae., Proc Natl Acad Sci U S A, vol. 108 no. 5 (February, 2011), pp. 1987-1992 [21245305], [doi]  [abs].
  29. Gonzales, K; Kayikci, O; Schaeffer, DG; Magwene, P, Modeling mutant phenotypes and oscillatory dynamics in the Saccharomyces cerevisiae cAMP-PKA pathway, BMC Systems Biology, vol. 7 (December, 2010), pp. 40, BioMed Central [doi]  [abs].
  30. Granek, JA; Magwene, PM, Environmental and genetic determinants of colony morphology in yeast., PLoS Genet, vol. 6 no. 1 (January, 2010), pp. e1000823 [20107600], [doi]  [abs].
  31. Munger, SC; Aylor, DL; Syed, HA; Magwene, PM; Threadgill, DW; Capel, B, Elucidation of the transcription network governing mammalian sex determination by exploiting strain-specific susceptibility to sex reversal., Genes Dev, vol. 23 no. 21 (November, 2009), pp. 2521-2536 [19884258], [doi]  [abs].
  32. Magwene, PM, Statistical methods for studying modularity: a reply to Mitteroecker and Bookstein., Systematic biology, vol. 58 no. 1 (February, 2009), pp. 146-149 [20525574], [doi] .
  33. Magwene, PM, Using correlation proximity graphs to study phenotypic integration, Evolutionary Biology, vol. 35 no. 3 (September, 2008), pp. 191-198, Springer Nature [s11692-008-9030-y], [doi]  [abs].
  34. Magwene, PM, Integration and modularity in biological systems: A review, Acta Zoologica Sinica, vol. 52 (2006), pp. 490-493 .
  35. Magwene, PM; Kim, J, Estimating genomic coexpression networks using first-order conditional independence., Genome Biol, vol. 5 no. 12 (2004), pp. R100 [15575966], [doi]  [abs].
  36. Kim, J; Magwene, PM, Computational challenges for integrative genomics, Genomics and Informatics, vol. 2 no. 1 (2004), pp. 7-18 .
  37. Magwene, PM; Lizardi, P; Kim, J, Reconstructing the temporal ordering of biological samples using microarray data., Bioinformatics, vol. 19 no. 7 (May, 2003), pp. 842-850 [12724294], [doi]  [abs].
  38. Stearns, SC; Magwene, P; American Society of Naturalists, , The naturalist in a world of genomics., The American naturalist, vol. 161 no. 2 (February, 2003), pp. 171-180 [doi]  [abs].
  39. Magwene, PM, Comparing ontogenetic trajectories using growth process data., Systematic biology, vol. 50 no. 5 (September, 2001), pp. 640-656 [12116936], [doi]  [abs].
  40. Magwene, PM, New tools for studying integration and modularity., Evolution, vol. 55 no. 9 (September, 2001), pp. 1734-1745 [11681729], [doi]  [abs].
  41. B. Chernoff and P. M. Magwene, Morphological Integration: Forty Years Later, in Morphological Integration (1999), University of Chicago Press .
  42. Sereno, PC; Dutheil, DB; Iarochene, M; Larsson, HCE; Lyon, GH; Magwene, PM; Sidor, CA; Varricchio, DJ; Wilson, JA, Predatory Dinosaurs from the Sahara and Late Cretaceous Faunal Differentiation, Science (New York, N.Y.), vol. 272 no. 5264 (May, 1996), pp. 986-991 [8662584], [doi]  [abs].
  43. Sereno, PC; Dutheil, DB; Iarochene, M; Larsson, H; Lyon, G; Magwene, P; Sidor, C; Varricchio, D; Wilson, J, Predatory dinosaurs from the Sahara and late Cretaceious faunal differntiation, Science, vol. 272 no. 17 (1996), pp. 986-991 [8662584]  [abs].