Publications of Sonke Johnsen    :chronological  alphabetical  combined  bibtex listing:

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Books

  1. Cronin, T. W., Johnsen, S., Marshall, N. J. and E. J. Warrant, Visual Ecology (2014), Princeton Press .

Papers Published

  1. Marshall, NJ; Powell, SB; Cronin, TW; Caldwell, RL; Johnsen, S; Gruev, V; Chiou, T-HS; Roberts, NW; How, MJ, Polarisation signals: a new currency for communication., The Journal of Experimental Biology, vol. 222 no. Pt 3 (February, 2019) [doi]  [abs].
  2. Ritschard, EA; Fitak, RR; Simakov, O; Johnsen, S, Genomic signatures of G-protein-coupled receptor expansions reveal functional transitions in the evolution of cephalopod signal transduction., Proceedings of the Royal Society B: Biological Sciences, vol. 286 no. 1897 (February, 2019), pp. 20182929 [doi]  [abs].
  3. Foster, JJ; Kirwan, JD; El Jundi, B; Smolka, J; Khaldy, L; Baird, E; Byrne, MJ; Nilsson, D-E; Johnsen, S; Dacke, M, Orienting to polarized light at night - matching lunar skylight to performance in a nocturnal beetle., The Journal of Experimental Biology, vol. 222 no. Pt 2 (January, 2019) [doi]  [abs].
  4. Schweikert, LE; Fitak, RR; Caves, EM; Sutton, TT; Johnsen, S, Spectral sensitivity in ray-finned fishes: diversity, ecology and shared descent., The Journal of Experimental Biology, vol. 221 no. Pt 23 (November, 2018) [doi]  [abs].
  5. Schweikert, LE; Caves, EM; Solie, SE; Sutton, TT; Johnsen, S, Variation in rod spectral sensitivity of fishes is best predicted by habitat and depth., Journal of Fish Biology (November, 2018) [doi]  [abs].
  6. Fitak, RR; Caves, EM; Johnsen, S, Orientation in Pill Bugs: An Interdisciplinary Activity to Engage Students in Concepts of Biology, Physics & Circular Statistics, The American Biology Teacher, vol. 80 no. 8 (October, 2018), pp. 608-618, University of California Press [doi]  [abs].
  7. Caves, EM; Green, PA; Zipple, MN; Peters, S; Johnsen, S; Nowicki, S, Categorical perception of colour signals in a songbird., Nature, vol. 560 no. 7718 (August, 2018), pp. 365-367 [doi]  [abs].
  8. Dreyer, D; Frost, B; Mouritsen, H; Günther, A; Green, K; Whitehouse, M; Johnsen, S; Heinze, S; Warrant, E, The Earth's Magnetic Field and Visual Landmarks Steer Migratory Flight Behavior in the Nocturnal Australian Bogong Moth., Current Biology : Cb, vol. 28 no. 13 (July, 2018), pp. 2160-2166.e5 [doi]  [abs].
  9. Fitak, RR; Johnsen, S, Green sea turtle (Chelonia mydas) population history indicates important demographic changes near the mid-Pleistocene transition, Marine Biology, vol. 165 no. 7 (July, 2018), Springer Nature [doi]  [abs].
  10. Fitak, RR; Schweikert, LE; Wheeler, BR; Ernst, DA; Lohmann, KJ; Johnsen, S, Near absence of differential gene expression in the retina of rainbow trout after exposure to a magnetic pulse: implications for magnetoreception., Biology Letters, vol. 14 no. 6 (June, 2018) [doi]  [abs].
  11. Caves, EM; Green, PA; Johnsen, S, Mutual visual signalling between the cleaner shrimp Ancylomenes pedersoni and its client fish., Proceedings of the Royal Society B: Biological Sciences, vol. 285 no. 1881 (June, 2018) [doi]  [abs].
  12. Arniella, MB; Fitak, RR; Johnsen, S, Unmapped sequencing reads identify additional candidate genes linked to magnetoreception in rainbow trout, Environmental Biology of Fishes, vol. 101 no. 5 (May, 2018), pp. 711-721, Springer Nature [doi]  [abs].
  13. Caves, EM; Brandley, NC; Johnsen, S, Visual Acuity and the Evolution of Signals., Trends in Ecology and Evolution, vol. 33 no. 5 (May, 2018), pp. 358-372 [doi]  [abs].
  14. Schweikert, LE; Fitak, RR; Johnsen, S, De novo transcriptomics reveal distinct phototransduction signaling components in the retina and skin of a color-changing vertebrate, the hogfish (Lachnolaimus maximus)., Journal of Comparative Physiology. A, Neuroethology, Sensory, Neural, and Behavioral Physiology, vol. 204 no. 5 (May, 2018), pp. 475-485 [doi]  [abs].
  15. Caves, EM; Johnsen, S, AcuityView: An r package for portraying the effects of visual acuity on scenes observed by an animal, Methods in Ecology and Evolution, vol. 9 no. 3 (March, 2018), pp. 793-797, WILEY [doi]  [abs].
  16. Bracken-Grissom, H; Widder, E; Johnsen, S; Messing, C; Frank, T, Decapod diversity associated with deep-sea octocorals in the Gulf of Mexico, Crustaceana, vol. 91 no. 10 (January, 2018), pp. 1267-1275, BRILL [doi] .
  17. Haddock, SHD; Christianson, LM; Francis, WR; Martini, S; Dunn, CW; Pugh, PR; Mills, CE; Osborn, KJ; Seibel, BA; Choy, CA; Schnitzler, CE; Matsumoto, GI; Messié, M; Schultz, DT; Winnikoff, JR; Powers, ML; Gasca, R; Browne, WE; Johnsen, S; Schlining, KL; von Thun, S; Erwin, BE; Ryan, JF; Thuesen, EV, Insights into the biodiversity, behavior, and bioluminescence of deep-sea organisms using molecular and maritime technology., Oceanography, vol. 30 no. 4 (December, 2017), pp. 38-47, The Oceanography Society [doi]  [abs].
  18. Bagge, LE; Kinsey, ST; Gladman, J; Johnsen, S, Transparent anemone shrimp (Ancylomenes pedersoni) become opaque after exercise and physiological stress in correlation with increased hemolymph perfusion., The Journal of Experimental Biology, vol. 220 no. Pt 22 (November, 2017), pp. 4225-4233 [doi]  [abs].
  19. Fitak, RR; Johnsen, S, Bringing the analysis of animal orientation data full circle: model-based approaches with maximum likelihood., The Journal of Experimental Biology, vol. 220 no. Pt 21 (November, 2017), pp. 3878-3882 [doi]  [abs].
  20. Marshall, J; Johnsen, S, Fluorescence as a means of colour signal enhancement., Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol. 372 no. 1724 (July, 2017) [doi]  [abs].
  21. Taylor, BK; Johnsen, S; Lohmann, KJ, Detection of magnetic field properties using distributed sensing: a computational neuroscience approach., Bioinspiration & Biomimetics, vol. 12 no. 3 (May, 2017), pp. 036013 [doi]  [abs].
  22. Johnsen, S, Open Questions: We don't really know anything, do we? Open questions in sensory biology., Bmc Biology, vol. 15 no. 1 (May, 2017), pp. 43 [doi]  [abs].
  23. Caves, EM; Sutton, TT; Johnsen, S, Visual acuity in ray-finned fishes correlates with eye size and habitat., The Journal of Experimental Biology, vol. 220 no. Pt 9 (May, 2017), pp. 1586-1596 [doi]  [abs].
  24. Fitak, RR; Wheeler, BR; Ernst, DA; Lohmann, KJ; Johnsen, S, Candidate genes mediating magnetoreception in rainbow trout (Oncorhynchus mykiss)., Biology Letters, vol. 13 no. 4 (April, 2017) [doi]  [abs].
  25. Cronin, TW; Fasick, JI; Schweikert, LE; Johnsen, S; Kezmoh, LJ; Baumgartner, MF, Coping with copepods: do right whales (Eubalaena glacialis) forage visually in dark waters?, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol. 372 no. 1717 (April, 2017) [doi]  [abs].
  26. Thomas, KN; Robison, BH; Johnsen, S, Two eyes for two purposes: in situ evidence for asymmetric vision in the cockeyed squids Histioteuthis heteropsis and Stigmatoteuthis dofleini., Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol. 372 no. 1717 (April, 2017) [doi]  [abs].
  27. Tedore, C; Johnsen, S, Using RGB displays to portray color realistic imagery to animal eyes., Current Zoology, vol. 63 no. 1 (February, 2017), pp. 27-34 [doi]  [abs].
  28. Cronin, TW; Johnsen, S, Extraocular, Non-Visual, and Simple Photoreceptors: An Introduction to the Symposium., Integrative and Comparative Biology, vol. 56 no. 5 (November, 2016), pp. 758-763 [doi]  [abs].
  29. Bagge, LE; Osborn, KJ; Johnsen, S, Nanostructures and Monolayers of Spheres Reduce Surface Reflections in Hyperiid Amphipods., Current Biology : Cb, vol. 26 no. 22 (November, 2016), pp. 3071-3076 [doi]  [abs].
  30. Speiser, DI; Gagnon, YL; Chhetri, RK; Oldenburg, AL; Johnsen, S, Examining the Effects of Chromatic Aberration, Object Distance, and Eye Shape on Image-Formation in the Mirror-Based Eyes of the Bay Scallop Argopecten irradians., Integrative and Comparative Biology, vol. 56 no. 5 (November, 2016), pp. 796-808 [doi]  [abs].
  31. Ruxton, GD; Johnsen, S, The effect of aggregation on visibility in open water., Proceedings of the Royal Society B: Biological Sciences, vol. 283 no. 1839 (September, 2016) [doi]  [abs].
  32. Cronin, TW; Gagnon, YL; Johnsen, S; Marshall, NJ; Roberts, NW, Comment on "Open-ocean fish reveal an omnidirectional solution to camouflage in polarized environments"., Science (New York, N.Y.), vol. 353 no. 6299 (August, 2016), pp. 552 [doi]  [abs].
  33. Tedore, C; Johnsen, S, Disentangling the visual cues used by a jumping spider to locate its microhabitat., The Journal of Experimental Biology, vol. 219 no. Pt 15 (August, 2016), pp. 2396-2401 [doi]  [abs].
  34. Johnsen, S; Gagnon, YL; Marshall, NJ; Cronin, TW; Gruev, V; Powell, S, Polarization vision seldom increases the sighting distance of silvery fish., Current Biology : Cb, vol. 26 no. 16 (August, 2016), pp. R752-R754 [doi]  [abs].
  35. Wilkins, L; Marshall, NJ; Johnsen, S; Osorio, D, Modelling colour constancy in fish: implications for vision and signalling in water., The Journal of Experimental Biology, vol. 219 no. Pt 12 (June, 2016), pp. 1884-1892 [doi]  [abs].
  36. Zylinski, S; Osorio, D; Johnsen, S, Cuttlefish see shape from shading, fine-tuning coloration in response to pictorial depth cues and directional illumination., Proceedings of the Royal Society B: Biological Sciences, vol. 283 no. 1826 (March, 2016), pp. 20160062 [doi]  [abs].
  37. Johnsen, S, How to measure color using spectrometers and calibrated photographs., The Journal of Experimental Biology, vol. 219 no. Pt 6 (March, 2016), pp. 772-778 [doi]  [abs].
  38. Caves, EM; Frank, TM; Johnsen, S, Spectral sensitivity, spatial resolution and temporal resolution and their implications for conspecific signalling in cleaner shrimp., The Journal of Experimental Biology, vol. 219 no. Pt 4 (February, 2016), pp. 597-608 [doi]  [abs].
  39. Brandley, N; Johnson, M; Johnsen, S, Aposematic signals in North American black widows are more conspicuous to predators than to prey, Behavioral Ecology, vol. 27 no. 4 (January, 2016), pp. 1104-1112, Oxford University Press (OUP) [doi]  [abs].
  40. Costello, MJ; Brennan, LA; Mohamed, A; Gilliland, KO; Johnsen, S; Kantorow, M, Identification and Ultrastructural Characterization of a Novel Nuclear Degradation Complex in Differentiating Lens Fiber Cells., Plos One, vol. 11 no. 8 (2016), pp. e0160785 [doi]  [abs].
  41. Bedore, CN; Kajiura, SM; Johnsen, S, Freezing behaviour facilitates bioelectric crypsis in cuttlefish faced with predation risk., Proceedings of the Royal Society B: Biological Sciences, vol. 282 no. 1820 (December, 2015), pp. 20151886 [repository], [doi]  [abs].
  42. Tedore, C; Johnsen, S, Immunological dependence of plant-dwelling animals on the medicinal properties of their plant substrates: a preliminary test of a novel evolutionary hypothesis, Arthropod Plant Interactions, vol. 9 no. 5 (October, 2015), pp. 437-446, Springer Nature [doi]  [abs].
  43. Gagnon, YL; Sutton, TT; Johnsen, S, Corrigendum to "Visual acuity in pelagic fishes and mollusks" [Vis. Res. 92 (2013) 1-9] doi:10.1016/j.visres.2013.08.007, Vision Research, vol. 115 (October, 2015), pp. 155-156, Elsevier BV [doi] .
  44. Palmer, G; Johnsen, S, Downwelling spectral irradiance during evening twilight as a function of the lunar phase., Applied Optics, vol. 54 no. 4 (February, 2015), pp. B85-B92 [doi]  [abs].
  45. Tedore, C; Johnsen, S, Visual mutual assessment of size in male Lyssomanes viridis jumping spider contests, Behavioral Ecology, vol. 26 no. 2 (January, 2015), pp. 510-518, Oxford University Press (OUP) [doi]  [abs].
  46. Baldwin Fergus, JL; Johnsen, S; Osborn, KJ, A unique apposition compound eye in the mesopelagic hyperiid amphipod paraphronima gracilis, Current Biology : Cb, vol. 25 no. 4 (January, 2015), pp. 473-478 [doi]  [abs].
  47. Taniguchi, DAA; Gagnon, Y; Wheeler, BR; Johnsen, S; Jaffe, JS, Cuttlefish Sepia officinalis Preferentially Respond to Bottom Rather than Side Stimuli When Not Allowed Adjacent to Tank Walls., Plos One, vol. 10 no. 10 (January, 2015), pp. e0138690 [doi]  [abs].
  48. Dougherty, LF; Johnsen, S; Caldwell, RL; Marshall, NJ, A dynamic broadband reflector built from microscopic silica spheres in the 'disco' clam Ctenoides ales., Journal of the Royal Society, Interface, vol. 11 no. 98 (September, 2014), pp. 20140407 [doi]  [abs].
  49. Muchhala, N; Johnsen, S; Smith, SD, Competition for hummingbird pollination shapes flower color variation in Andean solanaceae., Evolution; International Journal of Organic Evolution, vol. 68 no. 8 (August, 2014), pp. 2275-2286 [doi]  [abs].
  50. Gagnon, YL; Speiser, DI; Johnsen, S, Simplifying numerical ray tracing for characterization of optical systems., Applied Optics, vol. 53 no. 21 (July, 2014), pp. 4784-4790 [doi]  [abs].
  51. Akre, KL; Johnsen, S, Psychophysics and the evolution of behavior., Trends in Ecology and Evolution, vol. 29 no. 5 (May, 2014), pp. 291-300 [doi]  [abs].
  52. Nilsson, D-E; Warrant, E; Johnsen, S, Computational visual ecology in the pelagic realm., Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol. 369 no. 1636 (January, 2014), pp. 20130038 [doi]  [abs].
  53. Gagnon, YL; Speiser, DI; Johnsen, S, Simplifying numerical ray tracing for characterization of optical systems, Applied Optics, vol. 53 no. 21 (January, 2014), pp. 4784-4790 [doi]  [abs].
  54. Johnsen, S; Gassmann, E; Reynolds, RA; Stramski, D; Mobley, C, The asymmetry of the underwater horizontal light field and its implications for mirror-based camouflage in silvery pelagic fish, Limnology and Oceanography, vol. 59 no. 6 (January, 2014), pp. 1839-1852, WILEY [doi]  [abs].
  55. Johnsen, S, Hide and seek in the open sea: pelagic camouflage and visual countermeasures., Annual Review of Marine Science, vol. 6 (January, 2014), pp. 369-392 [23987915], [doi]  [abs].
  56. Akre, KL; Johnsen, S, Psychophysics and the evolution of behavior, Trends in Ecology and Evolution, vol. 29 no. 5 (January, 2014), pp. 291-300 [doi]  [abs].
  57. Gagnon, Y. L., Speiser, D. I., and S. Johnsen, Simplifying numerical ray-tracing for characterizing imaging systems, Applied Optics, vol. 21 (2014), pp. 4784-4790 .
  58. Warrant, EJ; Johnsen, S, Vision and the light environment., Current Biology : Cb, vol. 23 no. 22 (November, 2013), pp. R990-R994 [doi]  [abs].
  59. Costello, MJ; Mohamed, A; Gilliland, KO; Fowler, WC; Johnsen, S, Ultrastructural analysis of the human lens fiber cell remodeling zone and the initiation of cellular compaction., Exp Eye Res, vol. 116 (November, 2013), pp. 411-418 [doi]  [abs].
  60. Gagnon, YL; Sutton, TT; Johnsen, S, Visual acuity in pelagic fishes and mollusks., Vision Research, vol. 92 (November, 2013), pp. 1-9 [23998988], [doi]  [abs].
  61. Costello, MJ; Brennan, LA; Basu, S; Chauss, D; Mohamed, A; Gilliland, KO; Johnsen, S; Menko, S; Kantorow, M, Autophagy and mitophagy participate in ocular lens organelle degradation., Exp Eye Res, vol. 116 (November, 2013), pp. 141-150 [doi]  [abs].
  62. Tedore, C; Johnsen, S, Pheromones exert top-down effects on visual recognition in the jumping spider Lyssomanes viridis., The Journal of Experimental Biology, vol. 216 no. Pt 9 (May, 2013), pp. 1744-1756 [23348952], [doi]  [abs].
  63. Nilsson, D-E; Warrant, EJ; Johnsen, S; Hanlon, RT; Shashar, N, The giant eyes of giant squid are indeed unexpectedly large, but not if used for spotting sperm whales., Bmc Evolutionary Biology, vol. 13 (January, 2013), pp. 187 [Gateway.cgi], [doi]  [abs].
  64. Mohamed, A; Gilliland, KO; Metlapally, S; Johnsen, S; Costello, MJ, Simple fixation and storage protocol for preserving the internal structure of intact human donor lenses and extracted human nuclear cataract specimens., Molecular Vision, vol. 19 (2013), pp. 2352-2359  [abs].
  65. Brandley, NC; Speiser, DI; Johnsen, S, Eavesdropping on visual secrets, Evolutionary Ecology, vol. 27 no. 6 (2013), pp. 1-24, Springer Nature [doi]  [abs].
  66. Johnsen, S; Frank, TM; Haddock, SHD; Widder, EA; Messing, CG, Light and vision in the deep-sea benthos: I. Bioluminescence at 500-1000 m depth in the Bahamian islands., The Journal of Experimental Biology, vol. 215 no. Pt 19 (October, 2012), pp. 3335-3343 [22956246], [doi]  [abs].
  67. Frank, TM; Johnsen, S; Cronin, TW, Light and vision in the deep-sea benthos: II. Vision in deep-sea crustaceans., The Journal of Experimental Biology, vol. 215 no. Pt 19 (October, 2012), pp. 3344-3353 [doi]  [abs].
  68. Costello, MJ; Burette, A; Weber, M; Metlapally, S; Gilliland, KO; Fowler, WC; Mohamed, A; Johnsen, S, Electron tomography of fiber cell cytoplasm and dense cores of multilamellar bodies from human age-related nuclear cataracts., Exp Eye Res, vol. 101 (August, 2012), pp. 72-81 [doi]  [abs].
  69. Nilsson, D-E; Warrant, EJ; Johnsen, S; Hanlon, R; Shashar, N, A unique advantage for giant eyes in giant squid., Current Biology : Cb, vol. 22 no. 8 (April, 2012), pp. 683-688 [doi]  [abs].
  70. Baldwin, J; Johnsen, S, The male blue crab, Callinectes sapidus, uses both chromatic and achromatic cues during mate choice., The Journal of Experimental Biology, vol. 215 no. Pt 7 (April, 2012), pp. 1184-1191 [22399664], [doi]  [abs].
  71. Holt, AL; Sweeney, AM; Johnsen, S; Morse, DE, Erratum: A highly distributed Bragg stack with unique geometry provides effective camouflage for Loliginid squid eyes (Journal of the Royal Society Interface (2011) 8, (1386-1399) DOI: 10.1098/rsif.2010.0702), Journal of the Royal Society, Interface, vol. 9 no. 68 (March, 2012), pp. 600, The Royal Society [doi] .
  72. Tedore, C; Johnsen, S, Weaponry, color, and contest success in the jumping spider Lyssomanes viridis., Behavioural Processes, vol. 89 no. 3 (March, 2012), pp. 203-211 [22093800], [doi]  [abs].
  73. Johnsen, S, The optics of life: A biologist's guide to light in nature, The Optics of Life: a Biologist'S Guide to Light in Nature (January, 2012)  [abs].
  74. Johnsen, S, Anything that involves a photon and an animal., Current Biology : Cb, vol. 22 no. 1 (January, 2012), pp. R6-R7 [22338703], [doi] .
  75. Costello, MJ; Chauss, D; Mohamed, A; Gilliland, KO; Johnsen, S; Bates, M; Brennan, LA; Kantorow, M, Autophagy and Mitophagy in the Ocular Lens, Journal of Cell Science, vol. 116 (2012), pp. 141-150 .
  76. Moore, BA; Kamilar, JM; Collin, SP; Bininda Emonds, ORP; Dominy, NJ; Hall, MI; Heesy, CP; Johnsen, S; Lisney, TJ; Loew, ER; Moritz, G; Nava, SS; Warrant, EJ; Yopak, KE; Fernández Jurici, E, Are all vertebrate retinas configured the same? Implications for the evolution of acute vision., Proceedings of the Royal Society of London, Series B (2012) .
  77. Frank, TM; Johnsen, S, Light and vision in the deep-sea benthos. II. Special visual adaptations in deep-sea benthic crustaceans, Journal of Experimental Biology, vol. 215 (2012), pp. 3344-3353 .
  78. Moore, BA; Kamilar, JM; Collin, SP; Bininda Emonds, ORP; Dominy, NJ; Hall, MI; Heesy, CP; Iwaniuk, AN; Johnsen, S; Lisney, TJ; Loew, ER; Moritz, G; Nava, SS; Warrant, EJ; Yopak, KE; Fernández Juricic, E, A novel method for comparative analysis of retinal specialization traits from topographic maps, Journal of Vision, vol. 12 no. 1-24 (2012), pp. 13 [doi]  [abs].
  79. Zylinski, S; Johnsen, S, Mesopelagic cephalopods switch between transparency and pigmentation to optimize camouflage in the deep., Current Biology : Cb, vol. 21 no. 22 (November, 2011), pp. 1937-1941 [22079113], [doi]  [abs].
  80. Holt, AL; Sweeney, AM; Johnsen, S; Morse, DE, A highly distributed Bragg stack with unique geometry provides effective camouflage for Loliginid squid eyes., Journal of the Royal Society, Interface, vol. 8 no. 63 (October, 2011), pp. 1386-1399 [doi]  [abs].
  81. Baldwin, J; Johnsen, S, Effects of molting on the visual acuity of the blue crab, Callinectes sapidus., The Journal of Experimental Biology, vol. 214 no. Pt 18 (September, 2011), pp. 3055-3061 [21865518], [doi]  [abs].
  82. Speiser, DI; Eernisse, DJ; Johnsen, S, A chiton uses aragonite lenses to form images., Current Biology : Cb, vol. 21 no. 8 (April, 2011), pp. 665-670 [21497091], [doi]  [abs].
  83. Jackson, E; Johnsen, S, Orientation to Objects in the Sea Urchin Strongylocentrotus purpuratus depends on apparent and not actual object size., The Biological Bulletin, vol. 220 no. 2 (April, 2011), pp. 86-88 [doi]  [abs].
  84. Johnsen, S; Marshall, NJ; Widder, EA, Polarization sensitivity as a contrast enhancer in pelagic predators: lessons from in situ polarization imaging of transparent zooplankton., Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol. 366 no. 1565 (March, 2011), pp. 655-670 [21282169], [doi]  [abs].
  85. Shashar, N; Johnsen, S; Lerner, A; Sabbah, S; Chiao, C-C; Mäthger, LM; Hanlon, RT, Underwater linear polarization: physical limitations to biological functions., Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol. 366 no. 1565 (March, 2011), pp. 649-654 [doi]  [abs].
  86. Bhandiwad, A; Johnsen, S, The effects of salinity and temperature on the transparency of the grass shrimp Palaemonetes pugio., The Journal of Experimental Biology, vol. 214 no. Pt 5 (March, 2011), pp. 709-716 [21307056], [doi]  [abs].
  87. Sweeney, AM; Boch, CA; Johnsen, S; Morse, DE, Twilight spectral dynamics and the coral reef invertebrate spawning response., The Journal of Experimental Biology, vol. 214 no. Pt 5 (March, 2011), pp. 770-777 [doi]  [abs].
  88. Speiser, DI; Loew, ER; Johnsen, S, Spectral sensitivity of the concave mirror eyes of scallops: potential influences of habitat, self-screening and longitudinal chromatic aberration., The Journal of Experimental Biology, vol. 214 no. Pt 3 (February, 2011), pp. 422-431 [21228201], [doi]  [abs].
  89. Tedore, CA; Johnsen, S, The function of male-male threat displays in the jumping spider Lyssomanes viridis, Behavioural Processes (Online for Now) (2011) .
  90. Jaffe, JS; Simonet, F; Laxton, B; Roberts, PLD; Zylinski, S; Johnsen, S; Sweeney, AM, Omni-Cam and the Sub Sea Holodeck: Systems for recording in-situ radiance and simulating underwater optical environments in the lab, Marine Technology Society Journal (2011) .
  91. Speiser, DI; Loew, ER; Johnsen, S, Spectral sensitivity of the concave mirror eyes of scallops: The influence of habitat and longitudinal chromatic aberration, Journal of Experimental Biology, vol. 214 no. Pt 3 (2011), pp. 422-431 [21228201], [doi]  [abs].
  92. Speiser, DI; Eernisse, D; Johnsen, S, Chitons eye have calcitic lenses and provide spatial vision, Current Biology, vol. 21 no. 8 (2011), pp. 665-670 [21497091], [doi]  [abs].
  93. Costello, MJ; Johnsen, S; Metlapally, S; Gilliland, KO; Frame, L; Balasubramanian, D, Multilamellar spherical particles as potential sources of excessive light scattering in human age-related nuclear cataracts., Exp Eye Res, vol. 91 no. 6 (December, 2010), pp. 881-889 [doi]  [abs].
  94. Yerramilli, D; Johnsen, S, Spatial vision in the purple sea urchin Strongylocentrotus purpuratus (Echinoidea)., The Journal of Experimental Biology, vol. 213 no. 2 (January, 2010), pp. 249-255 [20038658], [doi]  [abs].
  95. Baldwin, J; Johnsen, S, The importance of color in mate choice of the blue crab Callinectes sapidus., The Journal of Experimental Biology, vol. 212 no. Pt 22 (November, 2009), pp. 3762-3768 [19880739], [doi]  [abs].
  96. Johnsen, S; Lohmann, KJ, An inner ear magneto-receptor?, Physics Today, vol. 62 no. 2 (February, 2009), pp. 14-14, AIP Publishing [doi] .
  97. Marlow, H; Speiser, DI; Matus, D; Johnsen, S; Seaver, EC; Martindale, MQ, The evolution of a complex trait: Photoreception in the Metazoa, Nature (2009) .
  98. Speiser, DI; Johnsen, S, Comparative morphology of the concave mirror eyes of scallops (Pectinoidea), American Malacological Bulletin, vol. 26 no. 1-2 (December, 2008), pp. 27-33, American Malacological Society [doi]  [abs].
  99. Matz, MV; Frank, TM; Marshall, NJ; Widder, EA; Johnsen, S, Giant deep-sea protist produces bilaterian-like traces., Current Biology : Cb, vol. 18 no. 23 (December, 2008), pp. 1849-1854 [doi]  [abs].
  100. Costello, MJ; Johnsen, S; Metlapally, S; Gilliland, KO; Ramamurthy, B; Krishna, PV; Balasubramanian, D, Ultrastructural analysis of damage to nuclear fiber cell membranes in advanced age-related cataracts from India., Exp Eye Res, vol. 87 no. 2 (August, 2008), pp. 147-158 [doi]  [abs].
  101. Sweeney, AM; Haddock, SHD; Johnsen, S, Comparative visual acuity of coleoid cephalopods (Integrative and Comparative Biology 47, 6, (808-814) DOI: 10.1093/icb/icm092), Integrative and Comparative Biology, vol. 48 no. 1 (July, 2008), pp. 158, Oxford University Press (OUP) [doi] .
  102. Speiser, DI; Johnsen, S, Scallops visually respond to the size and speed of virtual particles., The Journal of Experimental Biology, vol. 211 no. Pt 13 (July, 2008), pp. 2066-2070 [18552295], [doi]  [abs].
  103. Gilliland, KO; Johnsen, S; Metlapally, S; Costello, MJ; Ramamurthy, B; Krishna, PV; Balasubramanian, D, Mie light scattering calculations for an Indian age-related nuclear cataract with a high density of multilamellar bodies., Molecular Vision, vol. 14 (March, 2008), pp. 572-582  [abs].
  104. Johnsen, S; Lohmann, KJ, Magnetoreception in animals, Physics Today, vol. 61 no. 3 (March, 2008), pp. 29-35, AIP Publishing [doi]  [abs].
  105. Metlapally, S; Costello, MJ; Gilliland, KO; Ramamurthy, B; Krishna, PV; Balasubramanian, D; Johnsen, S, Analysis of nuclear fiber cell cytoplasmic texture in advanced cataractous lenses from Indian subjects using Debye-Bueche theory., Experimental Eye Research, vol. 86 no. 2 (February, 2008), pp. 434-444 [doi]  [abs].
  106. Gilliland, KO; Johnsen, S; Metlapally, S; Costello, MJ; Ramamurthy, B; Krishna, PV; Balasubramanian, D, Mie Light Scattering Calculations for Multilamellar Bodies in Indian Age-Related Nuclear Cataracts, Molecular Vision, vol. 14 (2008), pp. 572-582  [abs].
  107. Johnsen, S, Does new technology inspire new directions? Examples drawn from pelagic visual ecology., Integrative and Comparative Biology, vol. 47 no. 6 (December, 2007), pp. 799-807 [21669759], [doi]  [abs].
  108. Sweeney, AM; Haddock, SHD; Johnsen, S, Comparative visual acuity of coleoid cephalopods., Integrative and Comparative Biology, vol. 47 no. 6 (December, 2007), pp. 808-814 [21669760], [doi]  [abs].
  109. Gagnon, YL; Shashar, N; Warrant, EJ; Johnsen, SJ, Light scattering by selected zooplankton from the Gulf of Aqaba., The Journal of Experimental Biology, vol. 210 no. Pt 21 (November, 2007), pp. 3728-3735 [doi]  [abs].
  110. Martin, CH; Johnsen, S, A field test of the Hamilton-Zuk hypothesis in the Trinidadian guppy (Poecilia reticulata), Behavioral Ecology and Sociobiology, vol. 61 no. 12 (October, 2007), pp. 1897-1909, Springer Nature [doi]  [abs].
  111. Johnsen, S; Mattern, E; Ritz, T, Light-dependent magnetoreception: quantum catches and opponency mechanisms of possible photosensitive molecules., The Journal of Experimental Biology, vol. 210 no. Pt 18 (September, 2007), pp. 3171-3178 [17766294], [doi]  [abs].
  112. Sweeney, AM; Des Marais, DL; Ban, Y-EA; Johnsen, S, Evolution of graded refractive index in squid lenses., Journal of the Royal Society, Interface, vol. 4 no. 15 (August, 2007), pp. 685-698 [17293312], [doi]  [abs].
  113. Costello, MJ; Johnsen, S; Gilliland, KO; Freel, CD; Fowler, WC, Predicted light scattering from particles observed in human age-related nuclear cataracts using mie scattering theory., Investigative Ophthalmology & Visual Science, vol. 48 no. 1 (January, 2007), pp. 303-312 [doi]  [abs].
  114. Gagnon, YL; Shashar, N; Warrant, EJ; Johnsen, S, Light scattering from pelagic zooplankton: measurements at different angles and modeling corresponding sighting distances, Journal of Experimental Biology, vol. 210 no. 21 (2007), pp. 3728-3735 [doi]  [abs].
  115. Sweeney, A; Haddock, SHD; Johnsen, S, Comparative visual acuity of coleoid cephalopods, Integrative and Comparative Biology, vol. 47 no. 808-814 (2007), pp. 808-814 [21669760], [doi]  [abs].
  116. Leech, DM; Johnsen, S, Ultraviolet vision and foraging in juvenile bluegill (Lepomis macrochirus), Canadian Journal of Fisheries and Aquatic Sciences, vol. 63 no. 10 (October, 2006), pp. 2183-2190, Canadian Science Publishing [doi]  [abs].
  117. Tuthill, JC; Johnsen, S, Polarization sensitivity in the red swamp crayfish Procambarus clarkii enhances the detection of moving transparent objects., The Journal of Experimental Biology, vol. 209 no. Pt 9 (May, 2006), pp. 1612-1616 [doi]  [abs].
  118. Johnsen, S; Kelber, A; Warrant, E; Sweeney, AM; Widder, EA; Lee, RL; Hernández-Andrés, J, Crepuscular and nocturnal illumination and its effects on color perception by the nocturnal hawkmoth Deilephila elpenor., The Journal of Experimental Biology, vol. 209 no. Pt 5 (March, 2006), pp. 789-800 [16481568], [doi]  [abs].
  119. Leech, DM; Johnsen, S, UV vision and the Feeding Ecology of Juvenile Bluegill Sunfish, Lepomis machrochirus., Canadian Journal of Fisheries and Aquatic Sciences, vol. 63 no. 10 (2006), pp. 2183-2190 [doi]  [abs].
  120. Johnsen, S; Lohmann, KJ, The physics and neurobiology of magnetoreception., Nature Reviews. Neuroscience, vol. 6 no. 9 (September, 2005), pp. 703-712 [16100517], [doi]  [abs].
  121. Johnsen, S, The red and the black: bioluminescence and the color of animals in the deep sea., Integrative and Comparative Biology, vol. 45 no. 2 (April, 2005), pp. 234-246 [21676767], [doi]  [abs].
  122. Weissburg, MJ; Browman, HI; Fields, DM; Hemmi, JM; Zeil, J; Higgs, DM; Johnsen, S; Mead, KS; Mogdans, J; Nevitt, GA; Bonadonna, F; Walker, MM; Dennis, TE, Sensory biology: Linking the internal and external ecologies of marine organisms, Marine Ecology Progress Series, vol. 287 (February, 2005), pp. 263-307, Inter-Research Science Center [doi] .
  123. Johnsen, S, Visual ecology on the high seas, Marine Ecology Progress Series, vol. 287 (January, 2005), pp. 281-285, INTER-RESEARCH [Gateway.cgi] .
  124. Blevins, E; Johnsen, S, Spatial vision in the echinoid genus Echinometra., The Journal of Experimental Biology, vol. 207 no. Pt 24 (November, 2004), pp. 4249-4253 [15531646], [doi]  [abs].
  125. Marsili, S; Salganik, RI; Albright, CD; Freel, CD; Johnsen, S; Peiffer, RL; Costello, MJ, Cataract formation in a strain of rats selected for high oxidative stress., Experimental Eye Research, vol. 79 no. 5 (November, 2004), pp. 595-612 [doi]  [abs].
  126. Gilliland, KO; Freel, CD; Johnsen, S; Craig Fowler, W; Costello, MJ, Distribution, spherical structure and predicted Mie scattering of multilamellar bodies in human age-related nuclear cataracts., Experimental Eye Research, vol. 79 no. 4 (October, 2004), pp. 563-576 [doi]  [abs].
  127. Johnsen, S; Widder, EA; Mobley, CD, Propagation and perception of bioluminescence: factors affecting counterillumination as a cryptic strategy., The Biological Bulletin, vol. 207 no. 1 (August, 2004), pp. 1-16 [15315939], [doi]  [abs].
  128. Johnsen, S; Sosik, HM, Shedding light on light in the ocean, Oceanus, vol. 43 (2004), pp. 24-28 .
  129. Gilliland, KO; Freel, CD; Johnsen, S; Fowler, C; Costello, MJ, Random distribution of multilamellar bodies in human age-related nuclear cataracts, Experimental Eye Research, vol. 79 no. 4 (2004), pp. 563-576 [doi]  [abs].
  130. Johnsen, S, Lifting the cloak of invisibility: the effects of changing optical conditions on pelagic crypsis., Integrative and Comparative Biology, vol. 43 no. 4 (August, 2003), pp. 580-590 [21680466], [doi]  [abs].
  131. Sweeney, A; Jiggins, C; Johnsen, S, Insect communication: Polarized light as a butterfly mating signal., Nature, vol. 423 no. 6935 (May, 2003), pp. 31-32 [12721616], [doi] .
  132. Avens, L; Wang, JH; Johnsen, S; Dukes, P; Lohmann, KJ, Responses of hatchling sea turtles to rotational displacements, Journal of Experimental Marine Biology and Ecology, vol. 288 no. 1 (March, 2003), pp. 111-124, Elsevier BV [doi]  [abs].
  133. Johnsen, S; Sosik, HM, Cryptic coloration and mirrored sides as camouflage strategies in near-surface pelagic habitats: Implications for foraging and predator avoidance, Limnology and Oceanography, vol. 48 no. 3 (January, 2003), pp. 1277-1288, WILEY [doi]  [abs].
  134. Johnsen, S, Cryptic and conspicuous coloration in the pelagic environment., Proceedings of the Royal Society B: Biological Sciences, vol. 269 no. 1488 (February, 2002), pp. 243-256 [11839193], [doi]  [abs].
  135. Johnsen, S, Hidden in plain sight: the ecology and physiology of organismal transparency., The Biological Bulletin, vol. 201 no. 3 (December, 2001), pp. 301-318 (invited review and cover article.) [11751243], [doi]  [abs].
  136. Johnsen, S; Widder, EA, Ultraviolet absorption in transparent zooplankton and its implications for depth distribution and visual predation, Marine Biology, vol. 138 no. 4 (January, 2001), pp. 717-730, Springer Nature [doi]  [abs].
  137. Lohmann, KJ; Johnsen, S, The neurobiology of magnetoreception in vertebrate animals., Trends in Neurosciences, vol. 23 no. 4 (April, 2000), pp. 153-159 (invited review.) [doi]  [abs].
  138. Widder, EA; Johnsen, S, 3D spatial point patterns of bioluminescent plankton: A map of the 'mine field', Journal of Plankton Research, vol. 22 no. 3 (March, 2000), pp. 409-420  [abs].
  139. Johnsen, S, Transparent animals., Scientific American, vol. 282 no. 2 (February, 2000), pp. 80-89 .
  140. Widder, EA; Johnsen, S; Bernstein, SA; Case, JF; Neilson, DJ, Thin layers of bioluminescent copepods found at density discontinuities in the water column, Marine Biology, vol. 134 no. 3 (August, 1999), pp. 429-437, Springer Nature [doi]  [abs].
  141. Johnsen, S; Kier, WM, Shade-seeking behaviour under polarized light by the brittlestar Ophioderma brevispinum (Echinodermata: Ophiuroidea), Journal of the Marine Biological Association of the Uk, vol. 79 no. 4 (August, 1999), pp. 761-763, Cambridge University Press (CUP) [doi]  [abs].
  142. Johnsen, S; Widder, EA, The physical basis of transparency in biological tissue: Ultrastructure and the minimization of light scattering, Journal of Theoretical Biology, vol. 199 no. 2 (1999), pp. 181-198, Elsevier BV [doi]  [abs].
  143. Johnsen, S; Balser, EJ; Widder, EA, Light-emitting suckers in an octopus [3], Nature, vol. 398 no. 6723 (March, 1999), pp. 113-114, Springer Nature (cover article.) [doi] .
  144. Johnsen, S; Balser, EJ; Fisher, EC; Widder, EA, Bioluminescence in the deep-sea cirrate octopod Stauroteuthis syrtensis verrill (Mollusca: Cephalopoda), The Biological Bulletin, vol. 197 no. 1 (January, 1999), pp. 26-39, University of Chicago Press [doi]  [abs].
  145. Johnsen, S; Kier, WM, Damage due to solar ultraviolet radiation in the brittlestar Ophioderma brevispinum (Echinodermata: Ophiuroidea), Journal of the Marine Biological Association of the Uk, vol. 78 no. 2 (January, 1998), pp. 681-684, Cambridge University Press (CUP) [doi]  [abs].
  146. Johnsen, S; Widder, EA, Transparency and visibility of gelatinous zooplankton from the Northwestern Atlantic and Gulf of Mexico, The Biological Bulletin, vol. 195 no. 3 (January, 1998), pp. 337-348, University of Chicago Press (cover article.) [doi]  [abs].
  147. Johnsen, S, Identification and localization of a possible rhodopsin in the echinoderms Asterias forbesi (Asteroidea) and Ophioderma brevispinum (Ophiuroidea)., The Biological Bulletin, vol. 193 no. 1 (August, 1997), pp. 97-105 [doi]  [abs].
  148. Johnsen, S, Extraocular sensitivity to polarized light in an echinoderm., The Journal of Experimental Biology, vol. 195 (October, 1994), pp. 281-291  [abs].
  149. Kauffman, SA; Johnsen, S, Coevolution to the edge of chaos: coupled fitness landscapes, poised states, and coevolutionary avalanches., Journal of Theoretical Biology, vol. 149 no. 4 (April, 1991), pp. 467-505 [doi]  [abs].

Book Chapters

  1. Zylinski, S; Johnsen, S, Visual cognition in deep-sea cephalopods: What we don’t know and why we don’t know it, in Cephalopod Cognition, edited by S. Darmaillacq and J. Mather. (January, 2014), pp. 223-241, Cambridge University Press [doi] .
  2. Marshall, J; Johnsen, S, Camouflage in marine fish, in Animal Camouflage: Mechanisms and Function (January, 2011), pp. 186-211, Cambridge University Press [doi]  [abs].
  3. D. M. Leech and S. Johnsen, Light, Biological Receptors, in Encyclopedia of Inland Waters, edited by G. E. Likens, vol. 2 (2009), pp. 671-681, Academic Press .
  4. Cummings, M. M. and S. Johnsen, Light in the rocky shores, in Encyclopedia of Tidepools and Rocky Shores, edited by M. Denny and S. Gaines Eds. (2007), pp. 327-331, University of California Press. .
  5. Johnsen, S., and K. J. Lohmann, Neurobiology of magnetoreception, in Encyclopedia of Neuroscience, edited by G. Adelman, B. H. Smith (2004) .
  6. Leech, D. and S. Johnsen, Avoidance and UV vision, in UV Effects in Aquatic Organisms and Ecosystems, edited by W. Helbling, H. Zagarese (2003), Royal Society of Chemistry .