Publications of Thomas Mitchell-Olds    :chronological  combined  bibtex listing:

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Papers Published

  1. Anderson, J., C.-R. Lee, C. Rushworth, R. Colautti, and T. Mitchell-Olds, Genetic tradeoffs and conditional neutrality contribute to local adaptation, Molecular Ecology, vol. 22 (2013), pp. 699-708 .
  2. Lee, C-R, and T. Mitchell-Olds, Complex trait divergence contributes to environmental niche differentiation in ecological speciation of Boechera stricta, Molecular Ecology (2013), pp. DOI: 10.1111/mec.12250 .
  3. Vigueira, C, B Rauh, T Mitchell-Olds, and AL Lawton-Rauh, Signatures of demography and recombination at coding genes in naturally-distributed populations of Arabidopsis lyrata subsp. petraea, PLoS ONE, vol. 8(3) (2013), pp. e58916 [doi] .
  4. Yang, R., D.J. Jarvis, H. Chen, M. Beilstein, J. Grimwood, J. Jenkins, S. Shu, S. Prochnik, M. Xin, C. Ma, J. Schmutz, R.A. Wing, T. Mitchell-Olds, K. Schumaker, X. Wang, The reference genome of the halophytic plant Eutrema salsugineum, Frontiers in Plant Genetics and Genomics (2013) [fpls.2013.00046], [doi] .
  5. Topp, CN, AS Iyer-Pascuzzi, JT Anderson, C-R Lee, PR Zurek, O Symonova, Y Zheng, A Bucksch, Y Milyeko, T Galkovskyi, BT Moore, J Harer, H Edelsbrunner, T Mitchell-Olds, JS Weitz, PN Benfey, 3-dimensional phenotyping of growing root systems and QTL mapping identifies core regions of the rice genome controlling root architecture, PNAS, vol. 10 (2012), pp. E1695-704 [doi] .
  6. Laluk, Kristin, KV Prasad, T Savchenko, H Celesnik, K Dehesh, M Levy, T Mitchell-Olds, A Reddy, The calmodulin-binding transcription factor SIGNAL RESPONSIVE1 is a novel regulator of glucosinolate metabolism and herbivory tolerance in Arabidopsis, Plant and Cell Physiology, vol. 53 (2012), pp. 2008-15 .
  7. Anderson, JT, AM Panetta, and T Mitchell-Olds, Evolutionary and ecological responses to anthropogenic climate change, Plant Physiology, vol. 160 (2012), pp. 1728-40 .
  8. Anderson, JT, MR Wagner, C Rushworth, KVSK Prasad, T Mitchell-Olds, The evolution of quantitative traits in complex environments, Heredity (2012) [doi] .
  9. Manzaneda, AJ, PJ Rey, JM Bastida, C Weiss-Lehman, E Raskin and T Mitchell-Olds, Environmental aridity determines cytotype segregation and polyploid frequency in Brachypodium distachyon (Poaceae), New Phytologist no. 193 (2012), pp. 797-805 .
  10. Colautti, R.I., C-R. Lee, and T. Mitchell-Olds, Origin, fate and architecture of ecologically relevant genetic variation, Current Opinion in Plant Biology, vol. 15 (2012), pp. 199-204 .
  11. Anderson, Jill, DW Inouye, A McKinney, and T Mitchell-Olds, Anderson, JT, DW Inouye, A. McKinney, and T. Mitchell-Olds. 2012. Phenotypic plasticity and adaptive evolution contribute to advancing flowering phenology in response to climate change. Proceedings of the Royal Society B, Proc. Roy. Soc. B., vol. 279 (2012), pp. 3843-52 .
  12. Olson-Manning, CF, M.R. Wagner, and T Mitchell-Olds, Adaptive evolution: evaluating empirical support for theoretical predictions, Nature Reviews Genetics, vol. 13 (2012), pp. 867-877 .
  13. Olson-Manning, CF, C-R Lee, MD Rausher, and T Mitchell-Olds, Evolution of flux control in the glucosinolate pathway in Arabidopsis thaliana, Molec. Biol. Evol., vol. 30 (2012), pp. 14-23 .
  14. Lee, C-R, and T. Mitchell-Olds, Environmental adaptation contributes to gene polymorphism across the Arabidopsis thaliana genome, Molec. Biol. Evol., vol. 29 (2012), pp. 3721-3728 .
  15. Prasad, KVS, B-H Song, C Olson-Manning, JT Anderson, C-R Lee, ME Schranz, AJ Windsor, MJ Clauss, AJ Manzaneda, I Naqvi, M Reichelt, J Gershenzon, SG Rupasinghe, MA Schuler, T Mitchell-Olds, A gain-of-function polymorphism controlling complex traits and fitness in nature, Science, vol. 337 (2012), pp. 1081-4 .
  16. Brkljacic, J., E. Grotewold, R. Scholl, T. Mockler, D. F. Garvin, P. Vain, T. Brutnell, R. Sibout, M. Bevan, H. Budak, A. Caicedo, C. Gao, Y. Gu, S. Hazen, B. Holt, S.-Y. Hong, M. Jordan, A. Manzaneda, T. Mitchell-Olds, K. Mochida, L. Mur, C.-M. Park, J. Sedbrook, M. Watt, S. J. Zheng, J. P. Vogel., Brachypodium as a model for the grasses: Today and the future, Plant Physiology, vol. 157 (2011), pp. 3-13 .
  17. Lee, C.R., and T. Mitchell-Olds, Quantifying Effects of Environmental and Geographical Factors on Patterns of Genetic Differentiation, Molecular Ecology, vol. 20 (2011), pp. 4631-42 .
  18. Rushworth, C., B. Song, C.-R. Lee, and T. Mitchell-Olds, Boechera, a model system for ecological genomics, Molecular Ecology, vol. 20 (2011), pp. 4843-57 .
  19. Anderson, JT, C-R Lee, and T. Mitchell-Olds, Life history QTLs and natural selection on flowering time in Boechera stricta, a perennial relative of Arabidopsis, Evolution, vol. 65 (2011), pp. 771-87 .
  20. Song, BH, and T Mitchell-Olds, Evolutionary and ecological genomics of non-model plants, Journal of Systematics and Evolution, vol. 49 (2011), pp. 17–24 .
  21. Anderson, JT, and T. Mitchell-Olds, Ecological genetics and genomics of plant defenses: Evidence and approaches, Functional Ecology, vol. 25 (2011), pp. 312–324 .
  22. Wagner, M.R., and T. Mitchell-Olds, Repeated phenotypic changes highlight molecular targets of convergent evolution, Genome Biology, vol. 12 (2011), pp. 124 doi:10.1186/gb-2011-12-8-124 .
  23. Anderson, JT, JH Willis, and T. Mitchell-Olds, Evolutionary genetics of plant adaptation., Trends in Genetics, vol. 27 (2011), pp. 258-266 .
  24. Anderson, JT and T Mitchell-Olds, Beyond QTL Cloning, PLoS Genetics (2010), pp. 6(11):e1001197 .
  25. Schwartz, CJ, MR Doyle, AJ Manzaneda, PJ Rey, T Mitchell-Olds and RM Amasino, Natural variation of flowering time and vernalization responsiveness in Brachypodium distachyon, Bioenerg. Res., vol. 3 (2010), pp. 38–46 .
  26. Gossmann, TI, B-H Song, AJ Windsor, T Mitchell-Olds, CJ Dixon, MV Kapralov, DA Filatov and A Eyre-Walker, Genome wide analyses reveal little evidence for adaptive evolution in many plant species, Molec. Biol. Evol., vol. 27 (2010), pp. 1822-32 .
  27. T. Mitchell-Olds, Complex-trait analysis in plants, Genome Biology, vol. 11 no. 4 (2010), pp. 113 .
  28. Heidel, A., S. Ramos-Onsins, W-K. Wang, T.Y.Chiang, and T. Mitchell-Olds, Population history in Arabidopsis halleri using multilocus analysis, Molec. Ecol., vol. 19 (2010), pp. 3364-79 .
  29. Manzaneda, A.J., VSK Prasad, and T. Mitchell-Olds, Variation and fitness costs for tolerance to different types of herbivore damage in Boechera stricta genotypes with contrasting glucosinolate structures, New Phytologist, vol. 188 (2010), pp. 464-77 .
  30. Schranz ME, AJ Manzaneda, AJ Windsor, MJ Clauss, T Mitchell-Olds, Ecological genomics of Boechera stricta: identification of a QTL controlling the allocation of methionine- vs branched-chain amino acid-derived glucosinolates and levels of insect herbivory, Heredity, vol. 102 (2009), pp. 465-74 .
  31. Metcalf CJ, Mitchell-Olds T, Life history in a model system: opening the black box with Arabidopsis thaliana, Ecology Letters, vol. 12 (2009), pp. 593-600 .
  32. Song, B-H, AJ Winsor, KJ Schmid, S Ramos-Onsins, ME Schranz, A Heidel and T Mitchell-Olds, Multilocus Patterns of Nucleotide Diversity, Population Structure and Linkage Disequilibrium in Boechera stricta, a Wild Relative of Arabidopsis, Genetics, vol. 181 (2009), pp. 1021-33 .
  33. Leinonen PH, Sandring S, Quilot B, Clauss MJ, Mitchell-Olds T, Agren J, Savolainen O, Local adaptation in European populations of Arabidopsis lyrata (Brassicaceae), Amer, J. Bot., vol. 96 (2009), pp. 1129-1137 .
  34. McKay, JK, JH Richards, KS Nemali, S Sen, T Mitchell-Olds, S Boles, EA Stahl, T Wayne, and TE Juenger, Genetics of drought adaptation in Arabidopsis thaliana II. QTL analysis of a new mapping population, Kas-1 x Tsu-1, Evolution, vol. 62 (2008), pp. 3014-26 .
  35. Hansen BG, RE Kerwin, JA Ober, VM Lambrix, T Mitchell-Olds, J Gershenzon, BA Halkier, DJ Kliebenstein., A novel 2-oxoacid-dependent dioxygenase involved in the formation of the goiterogenic 2-hydroxybut-3-enyl glucosinolate and generalist insect resistance in Arabidopsis thaliana, Plant Physiol, vol. 148 (2008), pp. 2096-108 .
  36. R. Ming, S. Hou, Y. Feng, Q. Yu, A. Dionne-Laporte, J. H. Saw, P. Senin, W. Wang, B. V. Ly, K. L. T. Lewis, S. L. Salzberg, L. Feng, M. R. Jones, R. L. Skelton, J. E. Murray, C. Chen, W. Qian, J. Shen, P. Du, M. Eustice, E. Tong, H. Tang, E. Lyons, R. E. Paull, T. P. Michael, K. Wall, D. Rice, H. Albert, M.-L. Wang, Y. J. Zhu, M. Schatz, N. Nagarajan, R. Agbayani, P. Guan, A. Blas, C. M. Wai, C. M. Ackerman, Y. Ren, C. Liu, J. Wang, J. Wang, J.-K. Na, E.V. Shakirov, B. Haas, J. Thimmapuram, D. Nelson, X. Wang, J. E. Bowers, A. R. Gschwend, A. L. Delcher, R. Singh, J. Y. Suzuki, S. Tripathi, K. Neupane, H. Wei, B. Irikura, M. Paidi, N. Jiang, W. Zhang, G. Presting, A. Windsor, R. N. Pérez, M. J. Torres, F. A. Feltus, B. Porter, Y. Li, A. M. Burroughs, M.-C. Luo, L. Liu, D. A. Christopher, S. M. Mount, P. H. Moore, T. Sugimura, J. Jiang, M. A. Schuler, V. Friedman, T. Mitchell-Olds, D. Shippen, C. W. dePamphilis, J. D. Palmer, M. Freeling, A. H. Paterson, D. Gonsalves, L. Wang, M. Alam, The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus), Nature, vol. 452 (2008), pp. 991-996 .
  37. Oyama, R.K., N. Formanova, M.J. Clauss, J. Kroymann, K.J. Schmid, H. Vogel, K. Weniger, A.J. Windsor, and T. Mitchell-Olds, The shrunken genome of Arabidopsis thaliana, Plant Systematics and Evolution, vol. 273 (2008), pp. 257–271 .
  38. Mitchell-Olds, T., M. Feder, and G. Wray, Evolutionary and ecological functional genomics, Heredity, vol. 100 (2008), pp. 101-102 .
  39. Benfey, PN, and T. Mitchell-Olds, From genotype to phenotype: systems biology meets natural variation, Science, vol. 320 (2008), pp. 495-7 .
  40. Schranz, M. E., B.-H. Song, A.J. Windsor, and T. Mitchell-Olds, Comparative genomics in the Brassicaceae: a family-wide perspective, Current Opinions in Plant Biology, vol. 10 (2007), pp. 168–175 .
  41. Kantama, L., T.F. Sharbel, E. Schranz, T. Mitchell-Olds, S. de Vries, H. de Jong, Diploid apomicts of the Boechera holboellii complex display large scale chromosome substitutions and aberrant chromosomes, PNAS, vol. 104 (2007), pp. 14026-31 .
  42. Vogel, H., J. Kroymann, and T. Mitchell-Olds, Different transcript patterns in response to specialist and generalist herbivores in the wild Arabidopsis relative Boechera divaricarpa, PLoS ONE, vol. 2(10) (2007), pp. e1081 .
  43. Wheat, CW, H. Vogel, U. Wittstock, M. Braby, D. Underwood, and T. Mitchell-Olds, The genetic basis of a plant-insect coevolutionary key innovation, Proc. Natl. Acad. Sci. USA, vol. 104 (2007), pp. 20427-31 .
  44. Pfalz M, H. Vogel, T. Mitchell-Olds, and J. Kroymann, Mapping of QTL for resistance against the crucifer specialist insect herbivore Pieris brassicae in a new Arabidopsis inbred line population, Da(1)-12 x Ei-2, PLoS ONE (2007), pp. e578. doi:10.1371/journal.pone.0000578. .
  45. Ramos-Onsins, S., S. Mousset, T. Mitchell-Olds, and W. Stephan, Population genetic inference conditioning on the number of segregating sites - a reassessment, Genetical Research, vol. 89 (2007), pp. 231-44 .
  46. Ramos-Onsins, S., and T. Mitchell-Olds, Mlcoalsim: Multilocus Coalescent Simulations, Evolutionary Bioinformatics, vol. 2 (2007), pp. 41-44 .
  47. Song, B.H., and T. Mitchell-Olds, High genetic diversity and population differentiation in Boechera fecunda, a rare relative of Arabidopsis, Molecular Ecology, vol. 16 (2007), pp. 4079-88 .
  48. de Meaux, J., A. Pop, and T. Mitchell-Olds, Cis-regulatory evolution of Chalcone-synthase expression in the Arabidopsis genus, Genetics, vol. 174 (2006), pp. 2181-202 .
  49. Schranz, ME, M.A. Lysak and T. Mitchell-Olds, The ABC’s of comparative genomics in the Brassicaceae: Building blocks of crucifer genomes, Trends in Plant Sciences, vol. 11 (2006), pp. 535-542 .
  50. Song, B.-H., M. Clauss, A. Pepper, and T. Mitchell-Olds, Geographic patterns of microsatellite variation in Boechera stricta, a close relative of Arabidopsis, Molecular Ecology, vol. 15 (2006), pp. 357–369 .
  51. Knight, C., H. Vogel, K. Kroymann, A. Shumate, H. Witsenboer, and T. Mitchell-Olds, Expression profiling and local adaptation of Boechera holboellii populations for water use efficiency across a naturally occurring water stress gradient, Molecular Ecology, vol. 15 (2006), pp. 1229-1237 .
  52. Clauss, M.J., and T. Mitchell-Olds, Population genetic structure of Arabidopsis lyrata in Europe, Molec. Ecol., vol. 15 (2006), pp. 2753-66 .
  53. Clauss, M.J., S. Dietel, G. Schubert, and T. Mitchell-Olds, Glucosinolate and trichome defenses in a natural Arabidopsis lyrata population, Journal of Chemical Ecology, vol. 32 (2006), pp. 2351-73 .
  54. Lee, C.E., and T. Mitchell-Olds., Ecological and evolutionary genomics of populations in nature, Molecular Ecology, vol. 15 (2006), pp. 1193-1195 .
  55. Schranz, M.E., and T. Mitchell-Olds, Independent ancient polyploidy events in the sister families Brassicaceae and Cleomaceae, Plant Cell, vol. 18 (2006), pp. 1152-1165 .
  56. Schranz, ME, L. Kantama, H. de Jong, and T. Mitchell-Olds, Asexual reproduction in a close-relative of Arabidopsis: a genetic investigation of apomixis in Boechera (Brassicaceae), New Phytol., vol. 171 (2006), pp. 425-438 .
  57. Benderoth M, S. Textor, A. Windsor, T. Mitchell-Olds, J. Gershenzon, J. Kroymann, Positive selection driving diversification in plant secondary metabolism, PNAS, vol. 103 (2006), pp. 9118-9123 .
  58. Heidel, A.J., M.J. Clauss, J. Kroymann, O. Savolainen, & T. Mitchell-Olds, Natural variation in MAM within and between populations of Arabidopsis lyrata determines glucosinolate phenotype, Genetics, vol. 173 (2006), pp. 1629-1636 .
  59. Mitchell-Olds, T., and J. Schmitt., Genetic mechanisms and evolutionary significance of natural variation in Arabidopsis, Nature, vol. 441 (2006), pp. 947-952 .
  60. Windsor, A.J., and T. Mitchell-Olds, Comparative genomics as a tool for gene discovery, Current Opinion in Biotechnology, vol. 17 (2006), pp. 161-167 .
  61. Schranz, M., D. Dobes, M. Koch, and T. Mitchell-Olds, Sexual reproduction, hybridization, apomixis and polyploidization in the genus Boechera (Brassicaceae), American Journal of Botany, vol. 92 (2005), pp. 1797-1810 .
  62. Kroymann, J., and T. Mitchell-Olds, Epistasis and balanced polymorphism influencing complex trait variation, Nature, vol. 435 (2005), pp. 95-98 .
  63. Kliebenstein, D., T. Mitchell-Olds, and J. Kroymann, The glucosinolate-myrosinase system in an ecological and evolutionary context, Current Opinion in Plant Biology, vol. 8 (2005), pp. 264-271 .
  64. Schmid, K.J., S. Ramos-Onsins, H. Ringys-Beckstein, B. Weisshaar, and T. Mitchell-Olds, A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from the standard neutral model of sequence evolution, Genetics, vol. 169 (2005), pp. 1601-1615 .
  65. de Meaux, J., U. Goebel, A. Pop and T. Mitchell-Olds, The potential for adaptive evolution in Arabidopsis thaliana CHS promoter region revealed by an allele-specific functional assay, Plant Cell, vol. 17 (2005), pp. 676-690 .
  66. Stranger, B., and T. Mitchell-Olds, Nucleotide variation at the myrosinase-encoding TGG1A locus in two populations of Arabidopsis lyrata ssp. lyrata, Molecular Ecology, vol. 14 (2005), pp. 295-309 .
  67. Koch, M. A., C. Dobes, M. Matschinger, W. Bleeker, J. Vogel, M. Kiefer, and T. Mitchell-Olds, Evolution of the trnF(GAA) Gene in Arabidopsis Relatives and the Brassicaceae Family: Monophyletic Origin and subsequent Diversification of a Plastidic Pseudogene, Mol Biol Evol., vol. 22 (2005), pp. 1032-1043 .
  68. Sharbel, T.F., T. Mitchell-Olds, C. Dobes, L. Kantama and H. de Jong, Biogeographic distribution of polyploidy and B chromosomes in the apomictic Boechera holboellii complex, Cytogenetics and Genome Research, vol. 109 (2005), pp. 283-292 .
  69. Windsor, A.J., M. Reichelt, A. Figuth, A. Svatoš, J. Kroymann, D. Kliebenstein, J. Gershenzon, and T. Mitchell-Olds, Geographic and evolutionary diversification of glucosinolates among near relatives of Arabidopsis thaliana (Brassicaceae), Phytochemistry, vol. 66 (2005), pp. 1321-33 .
  70. Wittstock, U. N. Agerbirk, E.J. Stauber, C.E. Olsen, M. Hippler, T. Mitchell-Olds, J. Gershenzon, and H. Vogel, Successful herbivore attack due to metabolic diversion of a plant chemical defense, Proc. Natl. Acad. Sci. USA., vol. 101 (2004), pp. 4859-4864 .
  71. Sharbel, T.F., M,L. Voigt, T. Mitchell-Olds, L. Kantama, and H. de Jong, Is the aneuploid chromosome in an apomictic Boechera holboellii a genuine B chromosome?, Cytogenet Genome Res., vol. 106 (2004), pp. 173-83 .
  72. Schein, M., Z. Yang, T. Mitchell-Olds, K.J. Schmid, Rapid evolution of a pollen-specific oleosin-like gene family from Arabidopsis thaliana and closely related species., Molec. Biol. Evol., vol. 21 (2004), pp. 659-669 .
  73. T. Mitchell-Olds, Multilocus analysis of variation in the closely related species Arabidopsis halleri and A. lyrata, Ramos-Onsins, S., B. Stranger, T. Mitchell-Olds, and M. Aguade, vol. 166 (2004), pp. 373-388 .
  74. 87. Kuittinen, H., A. de Haan, C. Vogl, S. Oikarinen, J. Leppälä, M. Koch, T. Mitchell-Olds, C. Langley, and O. Savolainen, Comparing the maps of close relatives Arabidopsis lyrata and Arabidopsis thaliana, Genetics, vol. 168 (2004), pp. 1575-1584 .
  75. Dobeš, C., T. Mitchell-Olds, and M.A. Koch, Intraspecific diversification in North American A. drummondii, A. ×divaricarpa, and A. holboellii (Brassicaceae) inferred from nuclear and chloroplast molecular markers – an integrative approach, Amer. J. Bot., vol. 91 (2004), pp. 2087-2101 .
  76. Dobeš, C., T. Mitchell-Olds and M. Koch, Extensive chloroplast haplotype variation indicates Pleistocene hybridization and radiation of North American Arabis drummondii, A. x divaricarpa, and A. holboellii (Brassicaceae), Molec. Ecol., vol. 13 (2004), pp. 349-370 .
  77. Dobeš, C., T. Mitchell-Olds, and M.A. Koch, Intraspecific diversification in North American A. drummondii, A. ×divaricarpa, and A. holboellii (Brassicaceae) inferred from nuclear and chloroplast molecular markers – an integrative approach, Amer. J. Bot., vol. 91 (2004), pp. 2087-2101 .
  78. Clauss, M.J., and T. Mitchell-Olds, Functional divergence in tandemly duplicated Arabidopsis trypsin inhibitor genes, Genetics, vol. 166 (2004), pp. 1419-36 .
  79. Koch, M.A., C. Dobeš, and T. Mitchell-Olds, Multiple hybrid formation in natural populations: concerted evolution of the internal transcribed spacer of nuclear ribosomal DNA (ITS) in North American Arabis divaricarpa (Brassicaceae), Mol. Biol. Evol., vol. 20 (2003), pp. 338-350 .
  80. Törjek, O., D. Berger, R. C. Meyer, C. Mussig, K. J. Schmid, T. Rosleff Sorensen, B. Weisshaar, T. Mitchell-Olds, and T. Altmann, Establishment of a high-efficiency SNP-based framework marker set for Arabidopsis, Plant Journal, vol. 36 (2003), pp. 122-140 .
  81. Schmid, K.J., T. R. Sörensen, R. Stracke, O. Törjék, T. Altmann, T. Mitchell-Olds, and B. Weisshaar, Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana, Genome Research, vol. 13 (2003), pp. 1250-1257 .
  82. Morin, P.A., G. Luikart, R.K. Wayne and the SNP workshop group, Applications of SNPs in ecology, evolution, and conservation, Trends in Ecology and Evolution, vol. 19 (2003), pp. 208-216 .
  83. McKay, J.K., J.H. Richards and T. Mitchell-Olds, Genetics of drought adaptation in Arabidopsis thaliana: I. Pleiotropy contributes to genetic correlations among ecological traits, Mol. Ecol., vol. 12 (2003), pp. 1137-51 .
  84. Kroymann, J., S. Donnerhacke, D. Schnabelrauch, and T. Mitchell-Olds, Evolutionary dynamics of an Arabidopsis insect resistance quantitative trait locus, Proc. Natl. Acad. Sci. USA., vol. 100 (2003), pp. 14587-14592 .
  85. Feder, M. and T. Mitchell-Olds, Evolutionary and ecological functional genomics, Nature Reviews Genetics, vol. 4 (2003), pp. 651-657 .
  86. de Meaux, J. and T. Mitchell-Olds, Evolution of plant resistance at the molecular level: Ecological context of species interactions, Heredity, vol. 91 (2003), pp. 345-352 .
  87. Clauss, M. J. and T. Mitchell-Olds, Population genetics of tandem trypsin inhibitor genes in two Arabidopsis species with contrasting ecology and life history, Mol. Ecol., vol. 12 (2003), pp. 1287-99 .
  88. Reichelt, M., P.D. Brown, B. Schneider, N.J. Oldham, E. Stauber, J. Tokuhisa, D.J. Kliebenstein, T. Mitchell-Olds, J. Gershenzon, Benzoic acid glucosinolate esters and other glucosinolates from Arabidopsis thaliana, Phytochemistry, vol. 59 (2002), pp. 663-71 .
  89. Ratzka, A. H. Vogel, D. J. Kliebenstein, T. Mitchell-Olds, and J. Kroymann, Disarming the mustard oil bomb, Proc. Natl. Acad. Sci. USA, vol. 99 (2002), pp. 11223-11228 .
  90. Mitchell-Olds, T. and M.J. Clauss, Plant evolutionary genomics, Current Opinion in Plant Biology, vol. 5 (2002), pp. 74-79 .
  91. Mitchell-Olds, T, and C. A. Knight, Chaperones as buffering agents?, Science, vol. 296 (2002), pp. 2348-2349 .
  92. 69. Kuittinen, H., M. Aguadé, D. Charlesworth, A. de Haan, B. Lauga, T. Mitchell-Olds, S. Oikarinen, S. Ramos-Onsins, B. Stranger, P. van Tienderen & O. Savolainen, A set of primers for functional biodiversity screening and comparative genetics in Brassicaceae, Molecular Ecology Notes, vol. 2 (2002), pp. 258-262 .
  93. 68. Kliebenstein, D.J., A. Figuth, and T. Mitchell-Olds, Genetic architecture of plastic methyl jasmonate responses in Arabidopsis thaliana, Genetics, vol. 161 (2002), pp. 1685-1696 .
  94. Kliebenstein, D., D. Pedersen, B. Barker, and T. Mitchell-Olds, Comparative analysis of QTLs controlling glucosinolates, myrosinase, and insect resistance in Arabidopsis thaliana, Genetics, vol. 161 (2002), pp. 325-332 .
  95. Haubold, B., J. Kroymann, A. Ratzka, T. Mitchell-Olds, and T. Wiehe, Recombination and gene conversion in a 170 kb genomic region of Arabidopsis thaliana, Genetics, vol. 161 (2002), pp. 1269-1278 .
  96. Clauss, M. J., H. Cobban and T. Mitchell-Olds, Cross-species microsatellite markers for elucidating differences in population genetic structure in Arabidopsis and Arabis (Brassicaceae), Molecular Ecology, vol. 11 (2002), pp. 591-601 .
  97. Berger, S. T. Mitchell-Olds, and H.U. Stotz, Local and differential control of vegetative storage protein expression in response to herbivore damage in Arabidopsis thaliana, Physiol. Plantarum, vol. 114 (2002), pp. 85-91 .
  98. Wiehe, T., S. Gebauer-Jung, T, Mitchell-Olds, and R. Guigo, SGP-1: Prediction and validation of homologous genes based on sequence alignments, Genome Research, vol. 11 (2001), pp. 574-1583 .
  99. Stotz, H.U., T. Koch, K. Weniger, W. Boland, T. Mitchell-Olds, Evidence for regulation of resistance in Arabidopsis to Egyptian cotton worm by salicylic and jasmonic acid signaling pathways, Planta, vol. 214 (2001), pp. 648-652 .
  100. Siemens, D. H., S. H. Garner, T. Mitchell-Olds, and R. M. Callaway, Cost of defense in the context of plant competition: Brassica rapa may grow and defend, Ecology, vol. 83 (2001), pp. 505-517 .
  101. Sharbel, T.F. and T. Mitchell-Olds, Recurrent polyploid origins and chloroplast phylogeography in the Arabis holboellii complex (Brassicaceae), Heredity, vol. 87 (2001), pp. 59-68 .
  102. T. Mitchell-Olds, Arabidopsis thaliana and its wild relatives: A model system for ecology and evolution, Trends in Ecology and Evolution, vol. 16 (2001), pp. 693-700 .
  103. McKay, J.K., J. G. Bishop, J.-Z. Lin, J.H. Richards, A. Sala, and T. Mitchell-Olds, Local adaptation across a climatic gradient despite small effective population size in the rare sapphire rockcress, Proc. Roy. Soc. B, vol. 268 (2001), pp. 1715-1721 .
  104. Lambrix, V., M. Reichelt, T. Mitchell-Olds, D.J. Kliebenstein, and J. Gershenzon, The Arabidopsis epithiospecifier protein promotes the hydrolysis of glucosinolates to nitriles and influences Trichoplusia ni herbivory, Plant Cell, vol. 13 (2001), pp. 2793-2807 .
  105. Kroymann, J., S. Textor, J. Tokuhisa, K. Falk, S. Bartram, J. Gershenzon, and T. Mitchell-Olds, A gene controlling variation in Arabidopsis glucosinolate composition is part of the methionine chain elongation pathway, Plant Physiology, vol. 127 (2001), pp. 1077-1088 .
  106. Koch, M., B. Haubold, and T. Mitchell-Olds, Molecular systematics of the Cruciferae: evidence from coding plastidic matK and nuclear CHS sequences, Amer. J. Bot., vol. 88 (2001), pp. 534-544 .
  107. Koch, M. A., B. Weisshaar, J. Kroymann, B. Haubold, T. Mitchell-Olds, Comparative genomics and regulatory evolution: conservation and function of the Chs and Apetala3 promoters, Molec. Biol. Evol., vol. 18 (2001), pp. 1882-1891 .
  108. Kliebenstein, D.J., V. M. Lambrix, M. Reichelt, J. Gershenzon and T. Mitchell-Olds, Gene duplication and the diversification of secondary metabolism: Tandem 2 oxoglutarate dependent dioxygenases control glucosinolate biosynthesis in Arabidopsis thaliana, Plant Cell, vol. 13 (2001), pp. 681-693 .
  109. Kliebenstein, D.J., J. Kroymann, P. Brown, A. Figuth, D. Pedersen, J. Gershenzon and T. Mitchell-Olds. 2001., Genetic Control of Natural Variation in Arabidopsis thaliana Glucosinolate Accumulation, Plant Physiology, vol. 126 (2001), pp. 811-825 .
  110. Kliebenstein, D.J., J. Gershenzon, and T. Mitchell-Olds, Comparative quantitative trait loci mapping of aliphatic, indolic and benzylic glucosinolate production in Arabidopsis thaliana leaves and seeds, Genetics, vol. 159 (2001), pp. 359-370 .
  111. Stotz, H.U., B.R. Pittendrigh, J. Kroymann, K. Weniger, J. Fritsche, A. Bauke, and T. Mitchell-Olds, Ethylene signaling reduces resistance of Arabidopsis against Egyptian cotton worm but not diamondback moth, Plant Physiology, vol. 124 (2000), pp. 1007-1026 .
  112. Sharbel, T.F., B. Haubold, and T. Mitchell-Olds, Genetic isolation by distance in Arabidopsis thaliana: biogeography and post-glacial colonization of Europe, Molecular Ecology, vol. 9 (2000), pp. 2109-2118 .
  113. Mitchell-Olds, T. and J. Bergelson, Editorial Overview: Genomics and coevolution, Current Opinion in Plant Biology, vol. 3 (2000), pp. 273-276 .
  114. Koch, M. A., B. Haubold, and T. Mitchell-Olds, Comparative evolutionary analysis of the chalcone synthase and alcohol dehydrogenase loci among different lineages of Arabidopsis, Arabis and related genera (Brassicaceae), Molec. Biol. Evol., vol. 17 (2000), pp. 1483-1498 .
  115. Campos de Quiros, H., R. Magrath, D. McCallum, J. Kroymann, D. Schnabelrauch, T. Mitchell-Olds, and R. Mithen, -Keto acid elongation and glucosinolate biosynthesis in Arabidopsis thaliana, Theor. Appl. Genet., vol. 101 (2000), pp. 429-437 .
  116. Bishop, J.G., A.M. Dean, and T. Mitchell-Olds, Adaptive evolution in the active site of plant class I chitinases suggests an evolutionary arms race, Proc. Natl. Acad. Sci. USA., vol. 97 (2000), pp. 5322-5327 .
  117. 43. Strauss, S.Y., D.H. Siemens, M.B. Decher, and T. Mitchell-Olds, Ecological costs of plant resistance to herbivores in the currency of pollination, Evolution, vol. 53 (1999), pp. 1105-1113 .
  118. Stotz, H.U., J. Kroymann, and T. Mitchell-Olds, Plant-insect interactions, Current Opinion in Plant Biology, vol. 2 (1999), pp. 268-272 .
  119. Marler, D., D. Pedersen, T. Mitchell-Olds, and R. M. Callaway, A PCR method for detecting dwarf mistletoe infection in Douglas-fir and western larch, Canadian Journal of Forest Research, vol. 29 (1999), pp. 1317-1321 .
  120. Koch, M., J. Bishop & T. Mitchell-Olds, Molecular systematics of Arabidopsis and Arabis, Plant Biology, vol. 1 (1999), pp. 529-537 .
  121. Siemens, D. H., and T. Mitchell-Olds, Evolution of pest induced defenses in Brassica plants: tests of theory, Ecology, vol. 79 (1998), pp. 632-646 .
  122. Mitchell-Olds, T., J. Gershenzon, I. T. Baldwin, and W. Boland, Chemical ecology in the molecular era, Trends in Plant Science, vol. 9 (1998), pp. 362-365 .
  123. Mitchell-Olds, T. and D. Pedersen, The molecular basis of quantitative genetic variation in central and secondary metabolism in Arabidopsis, Genetics, vol. 149 (1998), pp. 739-747 .
  124. Karowe, D. N., D. S. Siemens, and T. Mitchell-Olds, Species-specific response of glucosinolate content to elevated atmospheric CO2, Journal of Chemical Ecology, vol. 23 (1997), pp. 2569-2582 .
  125. Siemens, D. H., and T. Mitchell-Olds, Glucosinolates and herbivory by specialists (Coleoptera: Chrysomelidae, Lepidoptera: Plutellidae): Consequences of concentration and induced resistance, Environmental Entomology, vol. 25 (1996), pp. 1344-2353 .
  126. Mitchell-Olds, T., D. Siemens, D. Pedersen, Physiology and Costs of Resistance to Herbivory and Disease in Brassica, Entomologia Experimentalis et Applicata, vol. 80 (1996), pp. 231-237 .
  127. Mitchell-Olds, T. and R. D. Bradley, Genetics of Brassica rapa. 3. Cost of disease resistance to three fungal pathogens, Evolution, vol. 50 (1996), pp. 1859-1865 .
  128. Mitchell-Olds, T., Pleiotropy causes long-term genetic constraints on life history evolution in Brassica rapa, Evolution, vol. 50 (1996), pp. 1849-1858 .
  129. Mitchell-Olds, T., Genetic constraints on life history evolution: Quantitative trait loci influencing growth and flowering in Arabidopsis thaliana, Evolution, vol. 50 (1996), pp. 140-145 .
  130. Nakamura, R., T. Mitchell-Olds, R. S. Manasse, and D. Lello, Seed predation, pathogen infection, and life-history traits in Brassica rapa, Oecologia, vol. 102 (1995), pp. 324-328 .
  131. Mitchell-Olds, T., R. V. James, M. V. Palmer, and P. H. Williams, Genetics of Brassica rapa (syn. campestris). 2. Selection for multiple disease resistance to three fungal pathogens: Peronospora parasitica, Albugo candida, and Leptosphaeria maculans, Heredity, vol. 75 (1995), pp. 362-369 .
  132. Mitchell-Olds, T., The molecular basis of quantitative genetic variation in natural populations, Trends in Ecology and Evolution, vol. 10 (1995), pp. 324-328 .
  133. Mitchell-Olds, T., Interval mapping of viability loci causing heterosis in Arabidopsis, Genetics, vol. 140 (1995), pp. 1105-1109 .
  134. McCall, C., D. M. Waller, and T. Mitchell-Olds, Effects of serial inbreeding on fitness components in Impatiens capensis, Evolution, vol. 48 (1994), pp. 818-827 .
  135. Hamilton, M. B., and T. Mitchell-Olds, The mating system and relative performance of selfed and outcrossed progeny in Arabis fecunda (Brassicaceae), Amer. J. Botany, vol. 81 (1994), pp. 1252-1256 .
  136. Groover, A., M. Devey, T. Fiddler, J. Lee, R. Megraw, T. Mitchell-Olds, B. Sherman, C. Williams, and D. Neale, Identification of quantitative trait loci influencing wood specific gravity in an outbred pedigree of loblolly pine, Genetics, vol. 138 (1994), pp. 1293-1300 .
  137. Machlin, S., Mitchell-Olds, T., and Bradley, D., Genomic sequence of a Brassica campestris myrosinase gene, Plant Physiology, vol. 102 (1993), pp. 1359 - 1360 .
  138. Chadchawan, S., J. Bishop, O. P. Thangstad, A. M. Bones, T. Mitchell-Olds, and D. Bradley, Arabidopsis cDNA encoding myrosinase, Plant Physiology, vol. 103 (1993), pp. 671-672 .
  139. Shaw, R. G., and T. Mitchell-Olds, Unbalanced ANOVA: An Overview, Ecology, vol. 74 (1993), pp. 1638 - 1645 .
  140. Pavek, D. and T. Mitchell-Olds, Genetic diversity in plant species in Glacier National Park, Northwest Environmental Journal, vol. 8 (1992), pp. 181 - 183 .
  141. Mitchell-Olds, T., Does environmental variation maintain genetic variation? A question of scale, Trends in Ecology and Evolution, vol. 7 (1992), pp. 397-398 .
  142. Leeper, D., D. Pavek, R. Walsh, and T. Mitchell-Olds, Management of Arabis fecunda, a threatened plant, Northwest Environmental Journal, vol. 8 (1992), pp. 200 - 201 .
  143. McCall, C., T. Mitchell-Olds, D. M. Waller, Distance between mates affects seedling characters in a population of Impatiens capensis (Balsaminaceae), American Journal of Botany, vol. 78 (1991), pp. 964-970 .
  144. Dorn, L. A., and T. Mitchell-Olds, Genetics of Brassica campestris. 1. Genetic constraints on evolution of life-history characters, Evolution, vol. 45 (1991), pp. 371-379 .
  145. Mitchell-Olds, T., and R. G. Shaw, Comments on the causes of natural selection, Evolution, vol. 44 (1990), pp. 2158 .
  146. Mitchell-Olds, T., and J. Bergelson, Statistical genetics of Impatiens capensis. II. Natural selection, Genetics, vol. 124 (1990), pp. 417-421 .
  147. Mitchell-Olds, T., and J. Bergelson, Statistical genetics of Impatiens capensis. I. Genetic basis of quantitative variation, Genetics, vol. 124 (1990), pp. 407-415 .
  148. McCall, C., T. Mitchell-Olds, and D. M. Waller, Fitness consequences of outcrossing in Impatiens capensis: Tests of the frequency dependent and sib competition models, Evolution, vol. 43 (1989), pp. 1075-1084 .
  149. Mitchell-Olds, T., and R. G. Shaw, Regression analysis of natural selection: Statistical inference and biological interpretation, Evolution, vol. 41 (1987), pp. 1149-1161 .
  150. Mitchell-Olds, T., Analysis of local variation in plant size, Ecology, vol. 68 (1987), pp. 82-87 .
  151. Dixon, P. M., J. Weiner, T. Mitchell-Olds, and R. Woodley, Bootstrapping the Gini coefficient of inequality, Ecology, vol. 68 (1987), pp. 1548-1551 .
  152. Mitchell-Olds, T., and J. J. Rutledge, Quantitative genetics in natural plant populations: A review of the theory, American Naturalist, vol. 127 (1986), pp. 379-402 .
  153. Mitchell-Olds, T., Quantitative genetics of survival and growth in Impatiens capensis, Evolution, vol. 40 (1986), pp. 107-116 .
  154. Mitchell-Olds, T., Discussion of C. F. J. Wu's "Jackknife, bootstrap, and other resampling methods in regression analysis", Ann. Statis., vol. 14 (1986), pp. 1316-1318 .
  155. Mitchell-Olds, T., and R. P. Guries, Genetic load and heterozygosity in the Pinaceae, Can. J. Genet. Cytol., vol. 28 (1986), pp. 942-946 .
  156. Mitchell-Olds, T., and D. M. Waller, Relative performance of selfed and outcrossed progeny in Impatiens capensis, Evolution, vol. 39 (1985), pp. 533-544 .
  157. Charnov, E. L., J. J. Bull, and S. T. Mitchell-Olds, A note on sex and life histories, American Naturalist, vol. 117 (1981), pp. 814-818 .

Papers Accepted

  1. Mitchell-Olds, T., Selection on QTL and Complex Traits in Complex Environments, Molecular Ecology (2013) .

Papers Submitted

  1. Keith, RA, and T. Mitchell-Olds, Genetic variation for resistance to herbivores and plant pathogens, Plant Pathology (2013) .
  2. Anderson, JT, C-R Lee, and T. Mitchell-Olds, Strong selection genome-wide enhances fitness tradeoffs across environments and episodes of selection, Evolution (2012) .
  3. Lovell, JT, W Aliyu, M Mau, ME Schranz, M Koch, C Kiefer, B-H Song, T Mitchell-Olds and TF Sharbel, On the origin and evolution of apomixis in Boechera, Plant Reproduction (2012) .

Book Chapters

  1. Voigt, M.L., M. Melzer, T. Rutten, T. Mitchell-Olds, and T.F. Sharbel, Gametogenesis in the apomictic Boechera holboellii complex: the male perspective, in Apomixis: Evolution, Mechanisms and Perspectives. International Association for Plant Taxonomy - Koeltz Scientific Books, edited by Horand, E, U Grossniklaus, P Van Dijk, and T. Sharbel (2007) .
  2. Mitchell-Olds, T., I. Al-Shehbaz, M. Koch, and T. Sharbel, Crucifer Evolution in the Post-Genomic Era, in Diversity and Evolution of Plants - genotype and phenotype variation in higher plants, edited by Robert Henry (2005), pp. 119-137, CABI Press .
  3. Gurganus, M., and T. Mitchell-Olds, Quantitative Trait Loci and Developmental Plasticity, in Plant Evolutionary Genetics and the Biology of Weeds (2004), pp. 77-100, Endemic Species Research Institute, Ch-Chi, Taiwan .
  4. Kroymann, J, and T. Mitchell-Olds, Function and evolution of an Arabidopsis insect resistance QTL, in Biology of Molecular Plant-Microbe Interactions, edited by B. Lugtenberg, I Tikhonovich, and N. Provorov, vol. 4 (2003), pp. 259-262, APS Press .
  5. Stotz, H.U., J. Kroymann, M. Tobler and T. Mitchell-Olds, Systematic genetic and molecular analysis of insect resistance in Arabidopsis, in Biology of Plant-Microbe Interactions, edited by de Wit PJGM, Bisseling T, Stiekema WJ., vol. 2 (2000), pp. 373-373, International Society for Molecular Plant-Microbe Interactions .
  6. Mitchell-Olds, T., Genetics and Evolution of Insect Resistance in Arabidopsis, in Insect-Plant Interactions and Inducible Plant Defense, edited by D. J. Chadwick (1999), pp. 239 – 248, Novartis Foundation .
  7. Mitchell-Olds, T., Quantitative genetic changes in small populations, in Proceedings of the Fourth International Congress of Systematic and Evolutionary Biology (1991), pp. 634 - 638, Dioscorides Press .

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