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Publications of Sonke Johnsen    :chronological  alphabetical  combined  bibtex listing:

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Books

  1. Cronin, T. W., Johnsen, S., Marshall, N. J. and E. J. Warrant, Visual Ecology (2014), Princeton Press

Papers Published

  1. Caves, EM; Davis, AL; Nowicki, S; Johnsen, S, Backgrounds and the evolution of visual signals., Trends in ecology & evolution, vol. 39 no. 2 (February, 2024), pp. 188-198 [doi]  [abs]
  2. Notar, JC; Go, MC; Johnsen, S, Learning without a brain: classical conditioning in the ophiuroid Ophiocoma echinata, Behavioral Ecology and Sociobiology, vol. 77 no. 11 (November, 2023) [doi]  [abs]
  3. Nilsson, D-E; Johnsen, S; Warrant, E, Cephalopod versus vertebrate eyes., Current biology : CB, vol. 33 no. 20 (October, 2023), pp. R1100-R1105 [doi]  [abs]
  4. Caves, EM; Sutton, TT; Warrant, EJ; Johnsen, S, Measures and models of visual acuity in epipelagic and mesopelagic teleosts and elasmobranchs., Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology, vol. 209 no. 5 (September, 2023), pp. 807-826 [doi]  [abs]
  5. McCoy, DE; Shultz, AJ; Dall, JE; Dionne, JA; Johnsen, S, The carotenoid redshift: Physical basis and implications for visual signaling., Ecology and evolution, vol. 13 no. 9 (September, 2023), pp. e10408 [doi]  [abs]
  6. Schweikert, LE; Bagge, LE; Naughton, LF; Bolin, JR; Wheeler, BR; Grace, MS; Bracken-Grissom, HD; Johnsen, S, Dynamic light filtering over dermal opsin as a sensory feedback system in fish color change., Nature communications, vol. 14 no. 1 (August, 2023), pp. 4642 [doi]  [abs]
  7. Mullan, R; Davis, AD; Sutton, TT; Johnsen, S, An Investigation into the Mechanism Mediating Counterillumination in Myctophid Fishes (Myctophidae)., The Biological bulletin, vol. 244 no. 1 (February, 2023), pp. 63-69 [doi]  [abs]
  8. Taboada, C; Delia, J; Chen, M; Ma, C; Peng, X; Zhu, X; Jiang, L; Vu, T; Zhou, Q; Yao, J; O'Connell, L; Johnsen, S, Glassfrogs conceal blood in their liver to maintain transparency., Science (New York, N.Y.), vol. 378 no. 6626 (December, 2022), pp. 1315-1320 [doi]  [abs]
  9. Granger, J; Johnsen, S, Collective movement as a solution to noisy navigation and its vulnerability to population loss., Proceedings. Biological sciences, vol. 289 no. 1987 (November, 2022), pp. 20221910 [doi]  [abs]
  10. Cooke, SJ; Bergman, JN; Twardek, WM; Piczak, ML; Casselberry, GA; Lutek, K; Dahlmo, LS; Birnie-Gauvin, K; Griffin, LP; Brownscombe, JW; Raby, GD; Standen, EM; Horodysky, AZ; Johnsen, S; Danylchuk, AJ; Furey, NB; Gallagher, AJ; Lédée, EJI; Midwood, JD; Gutowsky, LFG; Jacoby, DMP; Matley, JK; Lennox, RJ, The movement ecology of fishes., Journal of fish biology, vol. 101 no. 4 (October, 2022), pp. 756-779 [doi]  [abs]
  11. Johnsen, S, In the field: an interview with Sönke Johnsen, Journal of Experimental Biology, vol. 225 no. 16 (August, 2022) [doi]
  12. Notar, JC; Meja, B; Johnsen, S, Testing Mechanisms of Vision: Sea Urchin Spine Density Does Not Correlate With Vision-Related Environmental Characteristics., Integrative and comparative biology (July, 2022), pp. icac119 [doi]  [abs]
  13. Davis, A; Zipple, MN; Diaz, D; Peters, S; Nowicki, S; Johnsen, S, Influence of visual background on discrimination of signal-relevant colours in zebra finches (Taeniopygia guttata)., Proceedings. Biological sciences, vol. 289 no. 1976 (June, 2022), pp. 20220756 [doi]  [abs]
  14. Green, PA; George, EM; Rosvall, KA; Johnsen, S; Nowicki, S, Testosterone, signal coloration, and signal color perception in male zebra finch contests., Ethology : formerly Zeitschrift fur Tierpsychologie, vol. 128 no. 2 (February, 2022), pp. 131-142 [doi]  [abs]
  15. Granger, J; Cummer, SA; Lohmann, KJ; Johnsen, S, Environmental sources of radio frequency noise: potential impacts on magnetoreception., Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology, vol. 208 no. 1 (January, 2022), pp. 83-95 [doi]  [abs]
  16. Johnsen, S; Haddock, SHD, Macropinna, CURRENT BIOLOGY, vol. 32 no. 6 (2022), pp. R256-R257 [doi]  [abs]
  17. Wale, N; Fuller, RC; Johnsen, S; Turrill, ML; Duffy, MA, The visual ecology of selective predation: Are unhealthy hosts less stealthy hosts?, Ecology and Evolution, vol. 11 no. 24 (December, 2021), pp. 18591-18603 [doi]  [abs]
  18. Robinson, NJ; Johnsen, S; Brooks, A; Frey, L; Judkins, H; Vecchione, M; Widder, E, Studying the swift, smart, and shy: Unobtrusive camera-platforms for observing large deep-sea squid, Deep-Sea Research Part I: Oceanographic Research Papers, vol. 172 (June, 2021) [doi]  [abs]
  19. Caves, EM; Johnsen, S, The sensory impacts of climate change: bathymetric shifts and visually mediated interactions in aquatic species., Proceedings. Biological sciences, vol. 288 no. 1949 (April, 2021), pp. 20210396 [doi]  [abs]
  20. Kingston, ACN; Chappell, DR; Koch, L; Johnsen, S; Speiser, DI, The orbital hoods of snapping shrimp have surface features that may represent tradeoffs between vision and protection., Arthropod structure & development, vol. 61 (March, 2021), pp. 101025 [doi]  [abs]
  21. Caves, EM; Green, PA; Zipple, MN; Bharath, D; Peters, S; Johnsen, S; Nowicki, S, Comparison of Categorical Color Perception in Two Estrildid Finches., The American naturalist, vol. 197 no. 2 (February, 2021), pp. 190-202 [doi]  [abs]
  22. Davis, AL; Thomas, KN; Goetz, FE; Johnsen, S; Robison, BH; Osborn, KJ, Ultra-Black Deep-Sea Fishes, Optics and Photonics News, vol. 31 no. 12 (December, 2020), pp. 52 [doi]  [abs]
  23. Davis, AL; Thomas, KN; Goetz, FE; Robison, BH; Johnsen, S; Osborn, KJ, Ultra-black Camouflage in Deep-Sea Fishes., Current biology : CB, vol. 30 no. 17 (September, 2020), pp. 3470-3476.e3 [doi]  [abs]
  24. Schweikert, LE; Davis, AL; Johnsen, S; Bracken-Grissom, HD, Visual perception of light organ patterns in deep-sea shrimps and implications for conspecific recognition., Ecology and evolution, vol. 10 no. 17 (September, 2020), pp. 9503-9513 [doi]  [abs]
  25. Ernst, DA; Fitak, RR; Schmidt, M; Derby, CD; Johnsen, S; Lohmann, KJ, Pulse magnetization elicits differential gene expression in the central nervous system of the Caribbean spiny lobster, Panulirus argus., Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology, vol. 206 no. 5 (September, 2020), pp. 725-742 [doi]  [abs]
  26. Johnsen, S; Lohmann, KJ; Warrant, EJ, Animal navigation: a noisy magnetic sense?, The Journal of experimental biology, vol. 223 no. Pt 18 (September, 2020), pp. jeb164921 [doi]  [abs]
  27. Taboada, C; Brunetti, AE; Lyra, ML; Fitak, RR; Faigón Soverna, A; Ron, SR; Lagorio, MG; Haddad, CFB; Lopes, NP; Johnsen, S; Faivovich, J; Chemes, LB; Bari, SE, Multiple origins of green coloration in frogs mediated by a novel biliverdin-binding serpin., Proceedings of the National Academy of Sciences of the United States of America, vol. 117 no. 31 (August, 2020), pp. 18574-18581 [doi]  [abs]
  28. Caves, EM; Schweikert, LE; Green, PA; Zipple, MN; Taboada, C; Peters, S; Nowicki, S; Johnsen, S, Variation in carotenoid-containing retinal oil droplets correlates with variation in perception of carotenoid coloration, Behavioral Ecology and Sociobiology, vol. 74 no. 7 (July, 2020) [doi]  [abs]
  29. Davis, AL; Sutton, TT; Kier, WM; Johnsen, S, Evidence that eye-facing photophores serve as a reference for counterillumination in an order of deep-sea fishes., Proceedings. Biological sciences, vol. 287 no. 1928 (June, 2020), pp. 20192918 [doi]  [abs]
  30. Fitak, RR; Wheeler, BR; Johnsen, S, Effect of a magnetic pulse on orientation behavior in rainbow trout (Oncorhynchus mykiss)., Behavioural processes, vol. 172 (March, 2020), pp. 104058 [doi]  [abs]
  31. Davis, AL; Nijhout, HF; Johnsen, S, Diverse nanostructures underlie thin ultra-black scales in butterflies., Nature communications, vol. 11 no. 1 (March, 2020), pp. 1294 [doi]  [abs]
  32. Granger, J; Walkowicz, L; Fitak, R; Johnsen, S, Gray whales strand more often on days with increased levels of atmospheric radio-frequency noise., Current biology : CB, vol. 30 no. 4 (February, 2020), pp. R155-R156 [doi]  [abs]
  33. Costello, MJ; Gilliland, KO; Mohamed, A; Schey, KL; Johnsen, S; Brennan, LA; Kantorow, M, Novel mitochondrial derived Nuclear Excisosome degrades nuclei during differentiation of prosimian Galago (bush baby) monkey lenses., PloS one, vol. 15 no. 11 (January, 2020), pp. e0241631 [doi]  [abs]
  34. Johnsen, S, Development of Innovative Techniques for Exploring Novel Submarine Springs on the Gulf of Mexico Outer Continental Shelf, OCEANOGRAPHY, vol. 33 no. 1 (2020), pp. 96-96
  35. Johnsen, S, Journey into Midnight, OCEANOGRAPHY, vol. 33 no. 1 (2020), pp. 96-96
  36. Caves, EM; Nowicki, S; Johnsen, S, Von Uexküll Revisited: Addressing Human Biases in the Study of Animal Perception., Integrative and comparative biology, vol. 59 no. 6 (December, 2019), pp. 1451-1462 [doi]  [abs]
  37. Harris, OK; Kingston, ACN; Wolfe, CS; Ghoshroy, S; Johnsen, S; Speiser, DI, Core-shell nanospheres behind the blue eyes of the bay scallop Argopecten irradians., Journal of the Royal Society, Interface, vol. 16 no. 159 (October, 2019), pp. 20190383 [doi]  [abs]
  38. Caves, EM; Chen, C; Johnsen, S, The cleaner shrimp Lysmata amboinensis adjusts its behaviour towards predatory versus non-predatory clients., Biology letters, vol. 15 no. 9 (September, 2019), pp. 20190534 [doi]  [abs]
  39. Schweikert, LE; Caves, EM; Solie, SE; Sutton, TT; Johnsen, S, Variation in rod spectral sensitivity of fishes is best predicted by habitat and depth., Journal of fish biology, vol. 95 no. 1 (July, 2019), pp. 179-185 [doi]  [abs]
  40. Zipple, MN; Caves, EM; Green, PA; Peters, S; Johnsen, S; Nowicki, S, Categorical colour perception occurs in both signalling and non-signalling colour ranges in a songbird., Proceedings. Biological sciences, vol. 286 no. 1903 (May, 2019), pp. 20190524 [doi]  [abs]
  41. Ritschard, EA; Fitak, RR; Simakov, O; Johnsen, S, Genomic signatures of G-protein-coupled receptor expansions reveal functional transitions in the evolution of cephalopod signal transduction., Proceedings. Biological sciences, vol. 286 no. 1897 (February, 2019), pp. 20182929 [doi]  [abs]
  42. Marshall, NJ; Powell, SB; Cronin, TW; Caldwell, RL; Johnsen, S; Gruev, V; Chiou, T-HS; Roberts, NW; How, MJ, Polarisation signals: a new currency for communication., The Journal of experimental biology, vol. 222 no. Pt 3 (February, 2019), pp. jeb134213 [doi]  [abs]
  43. Foster, JJ; Kirwan, JD; El Jundi, B; Smolka, J; Khaldy, L; Baird, E; Byrne, MJ; Nilsson, D-E; Johnsen, S; Dacke, M, Orienting to polarized light at night - matching lunar skylight to performance in a nocturnal beetle., The Journal of experimental biology, vol. 222 no. Pt 2 (January, 2019), pp. jeb188532 [doi]  [abs]
  44. Schweikert, LE; Fitak, RR; Caves, EM; Sutton, TT; Johnsen, S, Spectral sensitivity in ray-finned fishes: diversity, ecology and shared descent., The Journal of experimental biology, vol. 221 no. Pt 23 (November, 2018), pp. jeb189761 [doi]  [abs]
  45. Fitak, RR; Caves, EM; Johnsen, S, Orientation in Pill Bugs: An Interdisciplinary Activity to Engage Students in Concepts of Biology, Physics & Circular Statistics, American Biology Teacher, vol. 80 no. 8 (October, 2018), pp. 608-618, University of California Press [doi]  [abs]
  46. Eisthen, HL; Halanych, KM; Kelley, DB; White, SA; Phelps, SM; 66 additional authors, , New NSF policy will stifle innovation., Science (New York, N.Y.), vol. 362 no. 6412 (October, 2018), pp. 297-298 [doi]
  47. Caves, EM; Green, PA; Zipple, MN; Peters, S; Johnsen, S; Nowicki, S, Categorical perception of colour signals in a songbird., Nature, vol. 560 no. 7718 (August, 2018), pp. 365-367 [doi]  [abs]
  48. Dreyer, D; Frost, B; Mouritsen, H; Günther, A; Green, K; Whitehouse, M; Johnsen, S; Heinze, S; Warrant, E, The Earth's Magnetic Field and Visual Landmarks Steer Migratory Flight Behavior in the Nocturnal Australian Bogong Moth., Current biology : CB, vol. 28 no. 13 (July, 2018), pp. 2160-2166.e5 [doi]  [abs]
  49. Fitak, RR; Johnsen, S, Green sea turtle (Chelonia mydas) population history indicates important demographic changes near the mid-Pleistocene transition, Marine Biology, vol. 165 no. 7 (July, 2018), Springer Nature [doi]  [abs]
  50. Fitak, RR; Schweikert, LE; Wheeler, BR; Ernst, DA; Lohmann, KJ; Johnsen, S, Near absence of differential gene expression in the retina of rainbow trout after exposure to a magnetic pulse: implications for magnetoreception., Biology letters, vol. 14 no. 6 (June, 2018), pp. 20180209 [doi]  [abs]
  51. Caves, EM; Green, PA; Johnsen, S, Mutual visual signalling between the cleaner shrimp Ancylomenes pedersoni and its client fish., Proceedings. Biological sciences, vol. 285 no. 1881 (June, 2018), pp. 20180800 [doi]  [abs]
  52. Arniella, MB; Fitak, RR; Johnsen, S, Unmapped sequencing reads identify additional candidate genes linked to magnetoreception in rainbow trout, Environmental Biology of Fishes, vol. 101 no. 5 (May, 2018), pp. 711-721, Springer Nature [doi]  [abs]
  53. Caves, EM; Brandley, NC; Johnsen, S, Visual Acuity and the Evolution of Signals., Trends in ecology & evolution, vol. 33 no. 5 (May, 2018), pp. 358-372 [doi]  [abs]
  54. Schweikert, LE; Fitak, RR; Johnsen, S, De novo transcriptomics reveal distinct phototransduction signaling components in the retina and skin of a color-changing vertebrate, the hogfish (Lachnolaimus maximus)., Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology, vol. 204 no. 5 (May, 2018), pp. 475-485 [doi]  [abs]
  55. Caves, EM; Johnsen, S, AcuityView: An r package for portraying the effects of visual acuity on scenes observed by an animal, Methods in Ecology and Evolution, vol. 9 no. 3 (March, 2018), pp. 793-797, WILEY [doi]  [abs]
  56. Bracken-Grissom, H; Widder, E; Johnsen, S; Messing, C; Frank, T, Decapod diversity associated with deep-sea octocorals in the Gulf of Mexico, Crustaceana, vol. 91 no. 10 (January, 2018), pp. 1267-1275, BRILL [doi]
  57. Haddock, SHD; Christianson, LM; Francis, WR; Martini, S; Dunn, CW; Pugh, PR; Mills, CE; Osborn, KJ; Seibel, BA; Choy, CA; Schnitzler, CE; Matsumoto, GI; Messié, M; Schultz, DT; Winnikoff, JR; Powers, ML; Gasca, R; Browne, WE; Johnsen, S; Schlining, KL; von Thun, S; Erwin, BE; Ryan, JF; Thuesen, EV, Insights into the biodiversity, behavior, and bioluminescence of deep-sea organisms using molecular and maritime technology., Oceanography, vol. 30 no. 4 (December, 2017), pp. 38-47, The Oceanography Society [doi]  [abs]
  58. Bagge, LE; Kinsey, ST; Gladman, J; Johnsen, S, Transparent anemone shrimp (Ancylomenes pedersoni) become opaque after exercise and physiological stress in correlation with increased hemolymph perfusion., The Journal of experimental biology, vol. 220 no. Pt 22 (November, 2017), pp. 4225-4233 [doi]  [abs]
  59. Fitak, RR; Johnsen, S, Bringing the analysis of animal orientation data full circle: model-based approaches with maximum likelihood., The Journal of experimental biology, vol. 220 no. Pt 21 (November, 2017), pp. 3878-3882 [doi]  [abs]
  60. Marshall, J; Johnsen, S, Fluorescence as a means of colour signal enhancement., Philosophical transactions of the Royal Society of London. Series B, Biological sciences, vol. 372 no. 1724 (July, 2017), pp. 20160335 [doi]  [abs]
  61. Taylor, BK; Johnsen, S; Lohmann, KJ, Detection of magnetic field properties using distributed sensing: a computational neuroscience approach., Bioinspiration & biomimetics, vol. 12 no. 3 (May, 2017), pp. 036013 [doi]  [abs]
  62. Caves, EM; Sutton, TT; Johnsen, S, Visual acuity in ray-finned fishes correlates with eye size and habitat., The Journal of experimental biology, vol. 220 no. Pt 9 (May, 2017), pp. 1586-1596 [doi]  [abs]
  63. Johnsen, S, Open Questions: We don't really know anything, do we? Open questions in sensory biology., BMC biology, vol. 15 no. 1 (May, 2017), pp. 43 [doi]  [abs]
  64. Fitak, RR; Wheeler, BR; Ernst, DA; Lohmann, KJ; Johnsen, S, Candidate genes mediating magnetoreception in rainbow trout (Oncorhynchus mykiss)., Biology letters, vol. 13 no. 4 (April, 2017), pp. 20170142 [doi]  [abs]
  65. Cronin, TW; Fasick, JI; Schweikert, LE; Johnsen, S; Kezmoh, LJ; Baumgartner, MF, Coping with copepods: do right whales (Eubalaena glacialis) forage visually in dark waters?, Philosophical transactions of the Royal Society of London. Series B, Biological sciences, vol. 372 no. 1717 (April, 2017), pp. 20160067 [doi]  [abs]
  66. Thomas, KN; Robison, BH; Johnsen, S, Two eyes for two purposes: in situ evidence for asymmetric vision in the cockeyed squids Histioteuthis heteropsis and Stigmatoteuthis dofleini., Philosophical transactions of the Royal Society of London. Series B, Biological sciences, vol. 372 no. 1717 (April, 2017), pp. 20160069 [doi]  [abs]
  67. Tedore, C; Johnsen, S, Using RGB displays to portray color realistic imagery to animal eyes., Current zoology, vol. 63 no. 1 (February, 2017), pp. 27-34 [doi]  [abs]
  68. Cronin, TW; Johnsen, S, Extraocular, Non-Visual, and Simple Photoreceptors: An Introduction to the Symposium., Integrative and comparative biology, vol. 56 no. 5 (November, 2016), pp. 758-763 [doi]  [abs]
  69. Bagge, LE; Osborn, KJ; Johnsen, S, Nanostructures and Monolayers of Spheres Reduce Surface Reflections in Hyperiid Amphipods., Current biology : CB, vol. 26 no. 22 (November, 2016), pp. 3071-3076 [doi]  [abs]
  70. Speiser, DI; Gagnon, YL; Chhetri, RK; Oldenburg, AL; Johnsen, S, Examining the Effects of Chromatic Aberration, Object Distance, and Eye Shape on Image-Formation in the Mirror-Based Eyes of the Bay Scallop Argopecten irradians., Integrative and comparative biology, vol. 56 no. 5 (November, 2016), pp. 796-808 [doi]  [abs]
  71. Ruxton, GD; Johnsen, S, The effect of aggregation on visibility in open water., Proceedings. Biological sciences, vol. 283 no. 1839 (September, 2016), pp. 20161463 [doi]  [abs]
  72. Cronin, TW; Gagnon, YL; Johnsen, S; Marshall, NJ; Roberts, NW, Comment on "Open-ocean fish reveal an omnidirectional solution to camouflage in polarized environments"., Science (New York, N.Y.), vol. 353 no. 6299 (August, 2016), pp. 552 [doi]  [abs]
  73. Tedore, C; Johnsen, S, Disentangling the visual cues used by a jumping spider to locate its microhabitat., The Journal of experimental biology, vol. 219 no. Pt 15 (August, 2016), pp. 2396-2401 [doi]  [abs]
  74. Johnsen, S; Gagnon, YL; Marshall, NJ; Cronin, TW; Gruev, V; Powell, S, Polarization vision seldom increases the sighting distance of silvery fish., Current biology : CB, vol. 26 no. 16 (August, 2016), pp. R752-R754 [doi]  [abs]
  75. Wilkins, L; Marshall, NJ; Johnsen, S; Osorio, D, Modelling colour constancy in fish: implications for vision and signalling in water., The Journal of experimental biology, vol. 219 no. Pt 12 (June, 2016), pp. 1884-1892 [doi]  [abs]
  76. Zylinski, S; Osorio, D; Johnsen, S, Cuttlefish see shape from shading, fine-tuning coloration in response to pictorial depth cues and directional illumination., Proceedings. Biological sciences, vol. 283 no. 1826 (March, 2016), pp. 20160062 [doi]  [abs]
  77. Johnsen, S, How to measure color using spectrometers and calibrated photographs., The Journal of experimental biology, vol. 219 no. Pt 6 (March, 2016), pp. 772-778 [doi]  [abs]
  78. Caves, EM; Frank, TM; Johnsen, S, Spectral sensitivity, spatial resolution and temporal resolution and their implications for conspecific signalling in cleaner shrimp., The Journal of experimental biology, vol. 219 no. Pt 4 (February, 2016), pp. 597-608 [doi]  [abs]
  79. Brandley, N; Johnson, M; Johnsen, S, Aposematic signals in North American black widows are more conspicuous to predators than to prey, Behavioral Ecology, vol. 27 no. 4 (January, 2016), pp. 1104-1112, Oxford University Press (OUP) [doi]  [abs]
  80. Costello, MJ; Brennan, LA; Mohamed, A; Gilliland, KO; Johnsen, S; Kantorow, M, Identification and Ultrastructural Characterization of a Novel Nuclear Degradation Complex in Differentiating Lens Fiber Cells., PLoS One, vol. 11 no. 8 (2016), pp. e0160785 [doi]  [abs]
  81. Bedore, CN; Kajiura, SM; Johnsen, S, Freezing behaviour facilitates bioelectric crypsis in cuttlefish faced with predation risk., Proceedings. Biological sciences, vol. 282 no. 1820 (December, 2015), pp. 20151886, ISSN 0962-8452 [repository], [doi]  [abs]
  82. Tedore, C; Johnsen, S, Immunological dependence of plant-dwelling animals on the medicinal properties of their plant substrates: a preliminary test of a novel evolutionary hypothesis, Arthropod-Plant Interactions, vol. 9 no. 5 (October, 2015), pp. 437-446, Springer Nature, ISSN 1872-8855 [doi]  [abs]
  83. Gagnon, YL; Sutton, TT; Johnsen, S, Corrigendum to "Visual acuity in pelagic fishes and mollusks" [Vis. Res. 92 (2013) 1-9] doi:10.1016/j.visres.2013.08.007, Vision Research, vol. 115 (October, 2015), pp. 155-156, Elsevier BV, ISSN 0042-6989 [doi]
  84. Tedore, C; Johnsen, S, Visual mutual assessment of size in male Lyssomanes viridis jumping spider contests, Behavioral Ecology, vol. 26 no. 2 (February, 2015), pp. 510-518, Oxford University Press (OUP), ISSN 1045-2249 [doi]  [abs]
  85. Palmer, G; Johnsen, S, Downwelling spectral irradiance during evening twilight as a function of the lunar phase., Applied optics, vol. 54 no. 4 (February, 2015), pp. B85-B92, ISSN 0003-6935 [doi]  [abs]
  86. Baldwin Fergus, JL; Johnsen, S; Osborn, KJ, A unique apposition compound eye in the mesopelagic hyperiid amphipod Paraphronima gracilis., Current biology : CB, vol. 25 no. 4 (February, 2015), pp. 473-478, ISSN 0960-9822 [doi]  [abs]
  87. Taniguchi, DAA; Gagnon, Y; Wheeler, BR; Johnsen, S; Jaffe, JS, Cuttlefish Sepia officinalis Preferentially Respond to Bottom Rather than Side Stimuli When Not Allowed Adjacent to Tank Walls., PloS one, vol. 10 no. 10 (January, 2015), pp. e0138690 [doi]  [abs]
  88. Dougherty, LF; Johnsen, S; Caldwell, RL; Marshall, NJ, A dynamic broadband reflector built from microscopic silica spheres in the 'disco' clam Ctenoides ales., Journal of the Royal Society, Interface, vol. 11 no. 98 (September, 2014), pp. 20140407, ISSN 1742-5689 [doi]  [abs]
  89. Muchhala, N; Johnsen, S; Smith, SD, Competition for hummingbird pollination shapes flower color variation in Andean solanaceae., Evolution; international journal of organic evolution, vol. 68 no. 8 (August, 2014), pp. 2275-2286, ISSN 0014-3820 [doi]  [abs]
  90. Gagnon, YL; Speiser, DI; Johnsen, S, Simplifying numerical ray tracing for characterization of optical systems., Applied optics, vol. 53 no. 21 (July, 2014), pp. 4784-4790, ISSN 0003-6935 [doi]  [abs]
  91. Akre, KL; Johnsen, S, Psychophysics and the evolution of behavior., Trends in ecology & evolution, vol. 29 no. 5 (May, 2014), pp. 291-300, ISSN 0169-5347 [doi]  [abs]
  92. Johnsen, S; Gassmann, E; Reynolds, RA; Stramski, D; Mobley, C, The asymmetry of the underwater horizontal light field and its implications for mirror-based camouflage in silvery pelagic fish, Limnology and Oceanography, vol. 59 no. 6 (January, 2014), pp. 1839-1852, WILEY, ISSN 0024-3590 [doi]  [abs]
  93. Nilsson, D-E; Warrant, E; Johnsen, S, Computational visual ecology in the pelagic realm., Philosophical transactions of the Royal Society of London. Series B, Biological sciences, vol. 369 no. 1636 (January, 2014), pp. 20130038, ISSN 0962-8436 [doi]  [abs]
  94. Johnsen, S, Hide and seek in the open sea: pelagic camouflage and visual countermeasures., Annual review of marine science, vol. 6 (January, 2014), pp. 369-392, ISSN 1941-1405 [23987915], [doi]  [abs]
  95. Gagnon, Y. L., Speiser, D. I., and S. Johnsen, Simplifying numerical ray-tracing for characterizing imaging systems, Applied Optics, vol. 21 (2014), pp. 4784-4790
  96. Warrant, EJ; Johnsen, S, Vision and the light environment., Current biology : CB, vol. 23 no. 22 (November, 2013), pp. R990-R994, ISSN 0960-9822 [doi]  [abs]
  97. Costello, MJ; Mohamed, A; Gilliland, KO; Fowler, WC; Johnsen, S, Ultrastructural analysis of the human lens fiber cell remodeling zone and the initiation of cellular compaction., Exp Eye Res, vol. 116 (November, 2013), pp. 411-418, ISSN 0014-4835 [doi]  [abs]
  98. Gagnon, YL; Sutton, TT; Johnsen, S, Visual acuity in pelagic fishes and mollusks., Vision research, vol. 92 (November, 2013), pp. 1-9 [23998988], [doi]  [abs]
  99. Costello, MJ; Brennan, LA; Basu, S; Chauss, D; Mohamed, A; Gilliland, KO; Johnsen, S; Menko, S; Kantorow, M, Autophagy and mitophagy participate in ocular lens organelle degradation., Exp Eye Res, vol. 116 (November, 2013), pp. 141-150, ISSN 0014-4835 [doi]  [abs]
  100. Nilsson, D-E; Warrant, EJ; Johnsen, S; Hanlon, RT; Shashar, N, The giant eyes of giant squid are indeed unexpectedly large, but not if used for spotting sperm whales., BMC evolutionary biology, vol. 13 (September, 2013), pp. 187, ISSN 1471-2148 [Gateway.cgi], [doi]  [abs]
  101. Tedore, C; Johnsen, S, Pheromones exert top-down effects on visual recognition in the jumping spider Lyssomanes viridis., The Journal of experimental biology, vol. 216 no. Pt 9 (May, 2013), pp. 1744-1756 [23348952], [doi]  [abs]
  102. Mohamed, A; Gilliland, KO; Metlapally, S; Johnsen, S; Costello, MJ, Simple fixation and storage protocol for preserving the internal structure of intact human donor lenses and extracted human nuclear cataract specimens., Mol Vis, vol. 19 (2013), pp. 2352-2359  [abs]
  103. Johnsen, S; Frank, TM; Haddock, SHD; Widder, EA; Messing, CG, Light and vision in the deep-sea benthos: I. Bioluminescence at 500-1000 m depth in the Bahamian islands., The Journal of experimental biology, vol. 215 no. Pt 19 (October, 2012), pp. 3335-3343, ISSN 0022-0949 [22956246], [doi]  [abs]
  104. Frank, TM; Johnsen, S; Cronin, TW, Light and vision in the deep-sea benthos: II. Vision in deep-sea crustaceans., The Journal of experimental biology, vol. 215 no. Pt 19 (October, 2012), pp. 3344-3353 [doi]  [abs]
  105. Costello, MJ; Burette, A; Weber, M; Metlapally, S; Gilliland, KO; Fowler, WC; Mohamed, A; Johnsen, S, Electron tomography of fiber cell cytoplasm and dense cores of multilamellar bodies from human age-related nuclear cataracts., Exp Eye Res, vol. 101 (August, 2012), pp. 72-81, ISSN 0014-4835 [doi]  [abs]
  106. Nilsson, D-E; Warrant, EJ; Johnsen, S; Hanlon, R; Shashar, N, A unique advantage for giant eyes in giant squid., Current biology : CB, vol. 22 no. 8 (April, 2012), pp. 683-688, ISSN 0960-9822 [doi]  [abs]
  107. Baldwin, J; Johnsen, S, The male blue crab, Callinectes sapidus, uses both chromatic and achromatic cues during mate choice., The Journal of experimental biology, vol. 215 no. Pt 7 (April, 2012), pp. 1184-1191 [22399664], [doi]  [abs]
  108. Holt, AL; Sweeney, AM; Johnsen, S; Morse, DE, Erratum: A highly distributed Bragg stack with unique geometry provides effective camouflage for Loliginid squid eyes (Journal of the Royal Society Interface (2011) 8, (1386-1399) DOI: 10.1098/rsif.2010.0702), Journal of the Royal Society Interface, vol. 9 no. 68 (March, 2012), pp. 600, The Royal Society, ISSN 1742-5689 [doi]
  109. Tedore, C; Johnsen, S, Weaponry, color, and contest success in the jumping spider Lyssomanes viridis., Behavioural processes, vol. 89 no. 3 (March, 2012), pp. 203-211 [22093800], [doi]  [abs]
  110. Johnsen, S, The optics of life: A biologist's guide to light in nature, The Optics of Life: A Biologist's Guide to Light in Nature (January, 2012)  [abs]
  111. Johnsen, S, Anything that involves a photon and an animal., Current biology : CB, vol. 22 no. 1 (January, 2012), pp. R6-R7 [22338703], [doi]
  112. Costello, MJ; Chauss, D; Mohamed, A; Gilliland, KO; Johnsen, S; Bates, M; Brennan, LA; Kantorow, M, Autophagy and Mitophagy in the Ocular Lens, Journal of Cell Science, vol. 116 (2012), pp. 141-150
  113. Brandley, NC; Johnsen, S, Eavesdropping on visual secrets, Evolutionary Ecology, vol. 27 no. 6 (2012), pp. 1045-1068, Springer Nature, ISSN 0269-7653 [doi]  [abs]
  114. Moore, BA; Kamilar, JM; Collin, SP; Bininda Emonds, ORP; Dominy, NJ; Hall, MI; Heesy, CP; Johnsen, S; Lisney, TJ; Loew, ER; Moritz, G; Nava, SS; Warrant, EJ; Yopak, KE; Fernández Jurici, E, Are all vertebrate retinas configured the same? Implications for the evolution of acute vision., Proceedings of the Royal Society of London, Series B (2012)
  115. Frank, TM; Johnsen, S, Light and vision in the deep-sea benthos. II. Special visual adaptations in deep-sea benthic crustaceans, Journal of Experimental Biology, vol. 215 (2012), pp. 3344-3353
  116. Moore, BA; Kamilar, JM; Collin, SP; Bininda Emonds, ORP; Dominy, NJ; Hall, MI; Heesy, CP; Iwaniuk, AN; Johnsen, S; Lisney, TJ; Loew, ER; Moritz, G; Nava, SS; Warrant, EJ; Yopak, KE; Fernández Juricic, E, A novel method for comparative analysis of retinal specialization traits from topographic maps, Journal of Vision, vol. 12 no. 1-24 (2012), pp. 13, ISSN 1534-7362 [doi]  [abs]
  117. Zylinski, S; Johnsen, S, Mesopelagic cephalopods switch between transparency and pigmentation to optimize camouflage in the deep., Current biology : CB, vol. 21 no. 22 (November, 2011), pp. 1937-1941 [22079113], [doi]  [abs]
  118. Holt, AL; Sweeney, AM; Johnsen, S; Morse, DE, A highly distributed Bragg stack with unique geometry provides effective camouflage for Loliginid squid eyes., Journal of the Royal Society, Interface, vol. 8 no. 63 (October, 2011), pp. 1386-1399, ISSN 1742-5689 [doi]  [abs]
  119. Baldwin, J; Johnsen, S, Effects of molting on the visual acuity of the blue crab, Callinectes sapidus., The Journal of experimental biology, vol. 214 no. Pt 18 (September, 2011), pp. 3055-3061 [21865518], [doi]  [abs]
  120. Jackson, E; Johnsen, S, Orientation to Objects in the Sea Urchin Strongylocentrotus purpuratus depends on apparent and not actual object size., The Biological bulletin, vol. 220 no. 2 (April, 2011), pp. 86-88, ISSN 0006-3185 [doi]  [abs]
  121. Speiser, DI; Eernisse, DJ; Johnsen, S, A chiton uses aragonite lenses to form images., Current biology : CB, vol. 21 no. 8 (April, 2011), pp. 665-670 [21497091], [doi]  [abs]
  122. Johnsen, S; Marshall, NJ; Widder, EA, Polarization sensitivity as a contrast enhancer in pelagic predators: lessons from in situ polarization imaging of transparent zooplankton., Philosophical transactions of the Royal Society of London. Series B, Biological sciences, vol. 366 no. 1565 (March, 2011), pp. 655-670 [21282169], [doi]  [abs]
  123. Shashar, N; Johnsen, S; Lerner, A; Sabbah, S; Chiao, C-C; Mäthger, LM; Hanlon, RT, Underwater linear polarization: physical limitations to biological functions., Philosophical transactions of the Royal Society of London. Series B, Biological sciences, vol. 366 no. 1565 (March, 2011), pp. 649-654, ISSN 0962-8436 [doi]  [abs]
  124. Bhandiwad, A; Johnsen, S, The effects of salinity and temperature on the transparency of the grass shrimp Palaemonetes pugio., The Journal of experimental biology, vol. 214 no. Pt 5 (March, 2011), pp. 709-716 [21307056], [doi]  [abs]
  125. Sweeney, AM; Boch, CA; Johnsen, S; Morse, DE, Twilight spectral dynamics and the coral reef invertebrate spawning response., The Journal of experimental biology, vol. 214 no. Pt 5 (March, 2011), pp. 770-777, ISSN 0022-0949 [doi]  [abs]
  126. Speiser, DI; Loew, ER; Johnsen, S, Spectral sensitivity of the concave mirror eyes of scallops: potential influences of habitat, self-screening and longitudinal chromatic aberration., The Journal of experimental biology, vol. 214 no. Pt 3 (February, 2011), pp. 422-431 [21228201], [doi]  [abs]
  127. Tedore, CA; Johnsen, S, The function of male-male threat displays in the jumping spider Lyssomanes viridis, Behavioural Processes (online for now) (2011)
  128. Jaffe, JS; Simonet, F; Laxton, B; Roberts, PLD; Zylinski, S; Johnsen, S; Sweeney, AM, Omni-Cam and the Sub Sea Holodeck: Systems for recording in-situ radiance and simulating underwater optical environments in the lab, Marine Technology Society Journal (2011)
  129. Speiser, DI; Loew, ER; Johnsen, S, Spectral sensitivity of the concave mirror eyes of scallops: The influence of habitat and longitudinal chromatic aberration, Journal of Experimental Biology, vol. 214 no. Pt 3 (2011), pp. 422-431 [21228201], [doi]  [abs]
  130. Speiser, DI; Eernisse, D; Johnsen, S, Chitons eye have calcitic lenses and provide spatial vision, Current Biology, vol. 21 no. 8 (2011), pp. 665-670 [21497091], [doi]  [abs]
  131. Costello, MJ; Johnsen, S; Metlapally, S; Gilliland, KO; Frame, L; Balasubramanian, D, Multilamellar spherical particles as potential sources of excessive light scattering in human age-related nuclear cataracts., Exp Eye Res, vol. 91 no. 6 (December, 2010), pp. 881-889, ISSN 0014-4835 [doi]  [abs]
  132. Yerramilli, D; Johnsen, S, Spatial vision in the purple sea urchin Strongylocentrotus purpuratus (Echinoidea)., The Journal of experimental biology, vol. 213 no. 2 (January, 2010), pp. 249-255 [20038658], [doi]  [abs]
  133. Baldwin, J; Johnsen, S, The importance of color in mate choice of the blue crab Callinectes sapidus., The Journal of experimental biology, vol. 212 no. Pt 22 (November, 2009), pp. 3762-3768 [19880739], [doi]  [abs]
  134. Johnsen, S; Lohmann, KJ, An inner ear magneto-receptor?, Physics Today, vol. 62 no. 2 (February, 2009), pp. 14-14, AIP Publishing [doi]
  135. Marlow, H; Speiser, DI; Matus, D; Johnsen, S; Seaver, EC; Martindale, MQ, The evolution of a complex trait: Photoreception in the Metazoa, Nature (2009)
  136. Speiser, DI; Johnsen, S, Comparative morphology of the concave mirror eyes of scallops (Pectinoidea), American Malacological Bulletin, vol. 26 no. 1-2 (December, 2008), pp. 27-33, American Malacological Society, ISSN 0740-2783 [doi]  [abs]
  137. Matz, MV; Frank, TM; Marshall, NJ; Widder, EA; Johnsen, S, Giant deep-sea protist produces bilaterian-like traces., Current biology : CB, vol. 18 no. 23 (December, 2008), pp. 1849-1854, ISSN 0960-9822 [doi]  [abs]
  138. Costello, MJ; Johnsen, S; Metlapally, S; Gilliland, KO; Ramamurthy, B; Krishna, PV; Balasubramanian, D, Ultrastructural analysis of damage to nuclear fiber cell membranes in advanced age-related cataracts from India., Exp Eye Res, vol. 87 no. 2 (August, 2008), pp. 147-158, ISSN 0014-4835 [doi]  [abs]
  139. Sweeney, AM; Haddock, SHD; Johnsen, S, Comparative visual acuity of coleoid cephalopods (Integrative and Comparative Biology 47, 6, (808-814) DOI: 10.1093/icb/icm092), Integrative and Comparative Biology, vol. 48 no. 1 (July, 2008), pp. 158, Oxford University Press (OUP), ISSN 1540-7063 [doi]
  140. Speiser, DI; Johnsen, S, Scallops visually respond to the size and speed of virtual particles., The Journal of experimental biology, vol. 211 no. Pt 13 (July, 2008), pp. 2066-2070, ISSN 0022-0949 [18552295], [doi]  [abs]
  141. Gilliland, KO; Johnsen, S; Metlapally, S; Costello, MJ; Ramamurthy, B; Krishna, PV; Balasubramanian, D, Mie light scattering calculations for an Indian age-related nuclear cataract with a high density of multilamellar bodies., Mol Vis, vol. 14 (March, 2008), pp. 572-582, ISSN 1090-0535  [abs]
  142. Johnsen, S; Lohmann, KJ, Magnetoreception in animals, Physics Today, vol. 61 no. 3 (March, 2008), pp. 29-35, AIP Publishing, ISSN 0031-9228 [doi]  [abs]
  143. Metlapally, S; Costello, MJ; Gilliland, KO; Ramamurthy, B; Krishna, PV; Balasubramanian, D; Johnsen, S, Analysis of nuclear fiber cell cytoplasmic texture in advanced cataractous lenses from Indian subjects using Debye-Bueche theory., Exp Eye Res, vol. 86 no. 2 (February, 2008), pp. 434-444, ISSN 0014-4835 [doi]  [abs]
  144. Gilliland, KO; Johnsen, S; Metlapally, S; Costello, MJ; Ramamurthy, B; Krishna, PV; Balasubramanian, D, Mie Light Scattering Calculations for Multilamellar Bodies in Indian Age-Related Nuclear Cataracts, Molecular Vision, vol. 14 (2008), pp. 572-582, ISSN 1090-0535  [abs]
  145. Johnsen, S, Does new technology inspire new directions? Examples drawn from pelagic visual ecology., Integrative and comparative biology, vol. 47 no. 6 (December, 2007), pp. 799-807, ISSN 1540-7063 [21669759], [doi]  [abs]
  146. Sweeney, AM; Haddock, SHD; Johnsen, S, Comparative visual acuity of coleoid cephalopods., Integrative and comparative biology, vol. 47 no. 6 (December, 2007), pp. 808-814, ISSN 1540-7063 [21669760], [doi]  [abs]
  147. Gagnon, YL; Shashar, N; Warrant, EJ; Johnsen, SJ, Light scattering by selected zooplankton from the Gulf of Aqaba., The Journal of experimental biology, vol. 210 no. Pt 21 (November, 2007), pp. 3728-3735, ISSN 0022-0949 [doi]  [abs]
  148. Martin, CH; Johnsen, S, A field test of the Hamilton-Zuk hypothesis in the Trinidadian guppy (Poecilia reticulata), Behavioral Ecology and Sociobiology, vol. 61 no. 12 (October, 2007), pp. 1897-1909, Springer Nature, ISSN 0340-5443 [doi]  [abs]
  149. Johnsen, S; Mattern, E; Ritz, T, Light-dependent magnetoreception: quantum catches and opponency mechanisms of possible photosensitive molecules., The Journal of experimental biology, vol. 210 no. Pt 18 (September, 2007), pp. 3171-3178, ISSN 0022-0949 [17766294], [doi]  [abs]
  150. Sweeney, AM; Des Marais, DL; Ban, Y-EA; Johnsen, S, Evolution of graded refractive index in squid lenses., Journal of the Royal Society, Interface, vol. 4 no. 15 (August, 2007), pp. 685-698, ISSN 1742-5689 [17293312], [doi]  [abs]
  151. Costello, MJ; Johnsen, S; Gilliland, KO; Freel, CD; Fowler, WC, Predicted light scattering from particles observed in human age-related nuclear cataracts using mie scattering theory., Invest Ophthalmol Vis Sci, vol. 48 no. 1 (January, 2007), pp. 303-312, ISSN 0146-0404 [doi]  [abs]
  152. Gagnon, YL; Shashar, N; Warrant, EJ; Johnsen, S, Light scattering from pelagic zooplankton: measurements at different angles and modeling corresponding sighting distances, Journal of Experimental Biology, vol. 210 no. 21 (2007), pp. 3728-3735, ISSN 0022-0949 [doi]  [abs]
  153. Sweeney, A; Haddock, SHD; Johnsen, S, Comparative visual acuity of coleoid cephalopods, Integrative and Comparative Biology, vol. 47 no. 808-814 (2007), pp. 808-814, ISSN 1540-7063 [21669760], [doi]  [abs]
  154. Leech, DM; Johnsen, S, Ultraviolet vision and foraging in juvenile bluegill (Lepomis macrochirus), Canadian Journal of Fisheries and Aquatic Sciences, vol. 63 no. 10 (October, 2006), pp. 2183-2190, Canadian Science Publishing, ISSN 0706-652X [doi]  [abs]
  155. Tuthill, JC; Johnsen, S, Polarization sensitivity in the red swamp crayfish Procambarus clarkii enhances the detection of moving transparent objects., The Journal of experimental biology, vol. 209 no. Pt 9 (May, 2006), pp. 1612-1616, ISSN 0022-0949 [doi]  [abs]
  156. Johnsen, S; Kelber, A; Warrant, E; Sweeney, AM; Widder, EA; Lee, RL; Hernández-Andrés, J, Crepuscular and nocturnal illumination and its effects on color perception by the nocturnal hawkmoth Deilephila elpenor., The Journal of experimental biology, vol. 209 no. Pt 5 (March, 2006), pp. 789-800, ISSN 0022-0949 [16481568], [doi]  [abs]
  157. Leech, DM; Johnsen, S, UV vision and the Feeding Ecology of Juvenile Bluegill Sunfish, Lepomis machrochirus., Canadian Journal of Fisheries and Aquatic Sciences, vol. 63 no. 10 (2006), pp. 2183-2190, ISSN 0706-652X [doi]  [abs]
  158. Johnsen, S; Lohmann, KJ, The physics and neurobiology of magnetoreception., Nature reviews. Neuroscience, vol. 6 no. 9 (September, 2005), pp. 703-712, ISSN 1471-003X [16100517], [doi]  [abs]
  159. Johnsen, S, The red and the black: bioluminescence and the color of animals in the deep sea., Integrative and comparative biology, vol. 45 no. 2 (April, 2005), pp. 234-246, ISSN 1540-7063 [21676767], [doi]  [abs]
  160. Weissburg, MJ; Browman, HI; Fields, DM; Hemmi, JM; Zeil, J; Higgs, DM; Johnsen, S; Mead, KS; Mogdans, J; Nevitt, GA; Bonadonna, F; Walker, MM; Dennis, TE, Sensory biology: Linking the internal and external ecologies of marine organisms, Marine Ecology Progress Series, vol. 287 (February, 2005), pp. 263-307, Inter-Research Science Center [doi]
  161. Johnsen, S, Visual ecology on the high seas, MARINE ECOLOGY PROGRESS SERIES, vol. 287 (January, 2005), pp. 281-285, INTER-RESEARCH, ISSN 0171-8630 [Gateway.cgi]
  162. Blevins, E; Johnsen, S, Spatial vision in the echinoid genus Echinometra., The Journal of experimental biology, vol. 207 no. Pt 24 (November, 2004), pp. 4249-4253, ISSN 0022-0949 [15531646], [doi]  [abs]
  163. Marsili, S; Salganik, RI; Albright, CD; Freel, CD; Johnsen, S; Peiffer, RL; Costello, MJ, Cataract formation in a strain of rats selected for high oxidative stress., Exp Eye Res, vol. 79 no. 5 (November, 2004), pp. 595-612, ISSN 0014-4835 [doi]  [abs]
  164. Gilliland, KO; Freel, CD; Johnsen, S; Craig Fowler, W; Costello, MJ, Distribution, spherical structure and predicted Mie scattering of multilamellar bodies in human age-related nuclear cataracts., Exp Eye Res, vol. 79 no. 4 (October, 2004), pp. 563-576, ISSN 0014-4835 [doi]  [abs]
  165. Johnsen, S; Widder, EA; Mobley, CD, Propagation and perception of bioluminescence: factors affecting counterillumination as a cryptic strategy., The Biological bulletin, vol. 207 no. 1 (August, 2004), pp. 1-16, ISSN 0006-3185 [15315939], [doi]  [abs]
  166. Johnsen, S; Sosik, HM, Shedding light on light in the ocean, Oceanus, vol. 43 (2004), pp. 24-28
  167. Gilliland, KO; Freel, CD; Johnsen, S; Fowler, C; Costello, MJ, Random distribution of multilamellar bodies in human age-related nuclear cataracts, Experimental Eye Research, vol. 79 no. 4 (2004), pp. 563-576, ISSN 0014-4835 [doi]  [abs]
  168. Johnsen, S, Lifting the cloak of invisibility: the effects of changing optical conditions on pelagic crypsis., Integrative and comparative biology, vol. 43 no. 4 (August, 2003), pp. 580-590, ISSN 1540-7063 [21680466], [doi]  [abs]
  169. Sweeney, A; Jiggins, C; Johnsen, S, Insect communication: Polarized light as a butterfly mating signal., Nature, vol. 423 no. 6935 (May, 2003), pp. 31-32, ISSN 0028-0836 [12721616], [doi]
  170. Avens, L; Wang, JH; Johnsen, S; Dukes, P; Lohmann, KJ, Responses of hatchling sea turtles to rotational displacements, Journal of Experimental Marine Biology and Ecology, vol. 288 no. 1 (March, 2003), pp. 111-124, Elsevier BV [doi]  [abs]
  171. Johnsen, S; Sosik, HM, Cryptic coloration and mirrored sides as camouflage strategies in near-surface pelagic habitats: Implications for foraging and predator avoidance, Limnology and Oceanography, vol. 48 no. 3 (January, 2003), pp. 1277-1288, WILEY [doi]  [abs]
  172. Johnsen, S, Cryptic and conspicuous coloration in the pelagic environment., Proceedings. Biological sciences, vol. 269 no. 1488 (February, 2002), pp. 243-256, ISSN 0962-8452 [11839193], [doi]  [abs]
  173. Johnsen, S, Hidden in plain sight: the ecology and physiology of organismal transparency., The Biological bulletin, vol. 201 no. 3 (December, 2001), pp. 301-318, ISSN 0006-3185 (invited review and cover article.) [11751243], [doi]  [abs]
  174. Johnsen, S; Widder, EA, Ultraviolet absorption in transparent zooplankton and its implications for depth distribution and visual predation, Marine Biology, vol. 138 no. 4 (January, 2001), pp. 717-730, Springer Nature [doi]  [abs]
  175. Lohmann, KJ; Johnsen, S, The neurobiology of magnetoreception in vertebrate animals., Trends in neurosciences, vol. 23 no. 4 (April, 2000), pp. 153-159, ISSN 0166-2236 (invited review.) [doi]  [abs]
  176. Johnsen, S, Transparent animals., Scientific American, vol. 282 no. 2 (February, 2000), pp. 80-89 [doi]
  177. Widder, EA; Johnsen, S, 3D spatial point patterns of bioluminescent plankton: A map of the 'mine field', Journal of Plankton Research, vol. 22 no. 3 (January, 2000), pp. 409-420 [doi]  [abs]
  178. Widder, EA; Johnsen, S; Bernstein, SA; Case, JF; Neilson, DJ, Thin layers of bioluminescent copepods found at density discontinuities in the water column, Marine Biology, vol. 134 no. 3 (August, 1999), pp. 429-437, Springer Nature [doi]  [abs]
  179. Johnsen, S; Kier, WM, Shade-seeking behaviour under polarized light by the brittlestar Ophioderma brevispinum (Echinodermata: Ophiuroidea), Journal of the Marine Biological Association of the United Kingdom, vol. 79 no. 4 (August, 1999), pp. 761-763, Cambridge University Press (CUP) [doi]  [abs]
  180. Johnsen, S; Widder, EA, The physical basis of transparency in biological tissue: Ultrastructure and the minimization of light scattering, Journal of Theoretical Biology, vol. 199 no. 2 (July, 1999), pp. 181-198, Elsevier BV [doi]  [abs]
  181. Johnsen, S; Balser, EJ; Widder, EA, Light-emitting suckers in an octopus, Nature, vol. 398 no. 6723 (March, 1999), pp. 113-114, Springer Nature, ISSN 0028-0836 (cover article.) [doi]
  182. Johnsen, S; Balser, EJ; Fisher, EC; Widder, EA, Bioluminescence in the deep-sea cirrate octopod Stauroteuthis syrtensis verrill (Mollusca: Cephalopoda), Biological Bulletin, vol. 197 no. 1 (January, 1999), pp. 26-39, University of Chicago Press [doi]  [abs]
  183. Johnsen, S; Kier, WM, Damage due to solar ultraviolet radiation in the brittlestar Ophioderma brevispinum (Echinodermata: Ophiuroidea), Journal of the Marine Biological Association of the United Kingdom, vol. 78 no. 2 (January, 1998), pp. 681-684, Cambridge University Press (CUP) [doi]  [abs]
  184. Johnsen, S; Widder, EA, Transparency and visibility of gelatinous zooplankton from the Northwestern Atlantic and Gulf of Mexico, Biological Bulletin, vol. 195 no. 3 (January, 1998), pp. 337-348, University of Chicago Press (cover article.) [doi]  [abs]
  185. Johnsen, S, Identification and localization of a possible rhodopsin in the echinoderms Asterias forbesi (Asteroidea) and Ophioderma brevispinum (Ophiuroidea)., The Biological bulletin, vol. 193 no. 1 (August, 1997), pp. 97-105, ISSN 0006-3185 [doi]  [abs]
  186. Johnsen, S, Extraocular sensitivity to polarized light in an echinoderm., The Journal of experimental biology, vol. 195 (October, 1994), pp. 281-291 [doi]  [abs]
  187. Johnsen, S; Kier, WM, Intramuscular crossed connective tissue fibres: skeletal support in the lateral fins of squid and cuttlefish (Mollusca: Cephalopoda), Journal of Zoology, vol. 231 no. 2 (January, 1993), pp. 311-338 [doi]  [abs]
  188. Kauffman, SA; Johnsen, S, Coevolution to the edge of chaos: coupled fitness landscapes, poised states, and coevolutionary avalanches., Journal of theoretical biology, vol. 149 no. 4 (April, 1991), pp. 467-505, ISSN 0022-5193 [doi]  [abs]

Book Chapters

  1. Cummings, M. M. and S. Johnsen, Light in the rocky shores, in Encyclopedia of Tidepools and Rocky Shores, edited by M. Denny and S. Gaines Eds. (2007), pp. 327-331, University of California Press.
  2. Johnsen, S., and K. J. Lohmann, Neurobiology of magnetoreception, in Encyclopedia of Neuroscience, edited by G. Adelman, B. H. Smith (2004)
  3. Leech, D. and S. Johnsen, Avoidance and UV vision, in UV Effects in Aquatic Organisms and Ecosystems, edited by W. Helbling, H. Zagarese (2003), Royal Society of Chemistry

Book Chapters

  1. Leech, DM; Johnsen, S, Light as an Ecological Resource, in Encyclopedia of Inland Waters, Second Edition, vol. 1 (January, 2022), pp. 237-256, ISBN 9780128191668 [doi]  [abs]
  2. Warrant, E; Johnsen, S; Nilsson, DE, 1.02 - Light and Visual Environments, in The Senses: A Comprehensive Reference: Volume 1-7, Second Edition, vol. 1 (January, 2020), pp. 4-30, ISBN 9780128054086 [doi]  [abs]
  3. Zylinski, S; Johnsen, S, Visual cognition in deep-sea cephalopods: What we don’t know and why we don’t know it, in Cephalopod Cognition, edited by S. Darmaillacq and J. Mather. (January, 2014), pp. 223-241, Cambridge University Press, ISBN 9781107015562 [doi]
  4. Marshall, J; Johnsen, S, Camouflage in marine fish, in Animal Camouflage: Mechanisms and Function (January, 2011), pp. 186-211, Cambridge University Press, ISBN 9780521199117 [doi]  [abs]
  5. Leech, DM; Johnsen, S, Light, Biological Receptors, in Encyclopedia of Inland Waters, edited by G. E. Likens, vol. 2 (January, 2009), pp. 671-681, Academic Press, ISBN 9780123706263 [doi]  [abs]
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