Publications of Patrick Charbonneau

Papers Published

  1. Yaida, S; Berthier, L; Charbonneau, P; Tarjus, G, "Point-to-set lengths, local structure, and glassiness.", Physical review. ESeptember,, 2016, 94(3-1), 032605 [abs].

  2. Zhuang, Y; Charbonneau, P, "Recent Advances in the Theory and Simulation of Model Colloidal Microphase Formers.", The Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces and BiophysicalAugust,, 2016, 120(32), 7775-7782 [doi[abs].

  3. Charbonneau, P; Corwin, EI; Parisi, G; Poncet, A; Zamponi, F, "Universal Non-Debye Scaling in the Density of States of Amorphous Solids.", Physical Review LettersJuly,, 2016, 117(4), 045503 [doi[abs].

  4. Berthier, L; Charbonneau, P; Jin, Y; Parisi, G; Seoane, B; Zamponi, F, "Growing timescales and lengthscales characterizing vibrations of amorphous solids.", Proceedings of the National Academy of Sciences of USAJuly,, 2016, 113(30), 8397-8401 [doi[abs].

  5. Altan, I; Charbonneau, P; Snell, EH, "Computational crystallization.", Archives of Biochemistry and BiophysicsJuly,, 2016, 602, 12-20 [doi[abs].

  6. Charbonneau, P; Dyer, E; Lee, J; Yaida, S, "Linking dynamical heterogeneity to static amorphous order", Journal of statistical mechanics (Online)July,, 2016, 2016(7), 074004-074004 [doi].

  7. Zhuang, Y; Charbonneau, P, "Equilibrium Phase Behavior of the Square-Well Linear Microphase-Forming Model.", The Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces and BiophysicalJuly,, 2016, 120(26), 6178-6188 [doi[abs].

  8. McManus, JJ; Charbonneau, P; Zaccarelli, E; Asherie, N, "The physics of protein self-assembly", Current Opinion in Colloid & Interface ScienceApril,, 2016, 22, 73-79 [doi].

  9. Fu, L; Steinhardt, W; Zhao, H; Socolar, JE; Charbonneau, P, "Hard sphere packings within cylinders.", Soft MatterMarch,, 2016, 12(9), 2505-2514 [doi[abs].

  10. Tavarone, R; Charbonneau, P; Stark, H, "Kinetic Monte Carlo simulations for birefringence relaxation of photo-switchable molecules on a surface.", Journal of Chemical PhysicsMarch,, 2016, 144(10), 104703 [doi[abs].

  11. Zhuang, Y; Zhang, K; Charbonneau, P, "Equilibrium Phase Behavior of a Continuous-Space Microphase Former.", Physical Review LettersMarch,, 2016, 116(9), 098301 [doi[abs].

  12. Marcoux, C; Byington, TW; Qian, Z; Charbonneau, P; Socolar, JES, "Erratum: Emergence of limit-periodic order in tiling models [Phys. Rev. E 90 , 012136 (2014)]", Physical review. EFebruary,, 2016, 93(2) [doi].

  13. Fusco, D; Charbonneau, P, "Soft matter perspective on protein crystal assembly.", Colloids and Surfaces B: BiointerfacesJanuary,, 2016, 137, 22-31 [doi[abs].

  14. Berthier, L; Charbonneau, P; Yaida, S, "Efficient measurement of point-to-set correlations and overlap fluctuations in glass-forming liquids.", Journal of Chemical PhysicsJanuary,, 2016, 144(2), 024501 [doi[abs].

  15. Owens, CE; Shields, CW; Cruz, DF; Charbonneau, P; López, GP, "Highly parallel acoustic assembly of microparticles into well-ordered colloidal crystallites.", Soft MatterJanuary,, 2016, 12(3), 717-728 [doi[abs].

  16. Tavarone, R; Charbonneau, P; Stark, H, "Phase ordering of zig-zag and bow-shaped hard needles in two dimensions.", Journal of Chemical PhysicsSeptember,, 2015, 143(11), 114505 [doi[abs].

  17. Jin, Y; Charbonneau, P, "Dimensional study of the dynamical arrest in a random Lorentz gas.", Physical Review E - Statistical, Nonlinear, and Soft Matter PhysicsApril,, 2015, 91(4), 042313 [doi[abs].

  18. Charbonneau, P; Corwin, EI; Parisi, G; Zamponi, F, "Jamming criticality revealed by removing localized buckling excitations.", Physical Review LettersMarch,, 2015, 114(12), 125504 [abs].

  19. Yang, Y; Fu, L; Marcoux, C; Socolar, JE; Charbonneau, P; Yellen, BB, "Phase transformations in binary colloidal monolayers.", Soft MatterMarch,, 2015, 11(12), 2404-2415 [doi[abs].

  20. Ye Yang, Lin Fu, Catherine Marcoux, Joshua E. S. Socolar, Patrick Charbonneau, Benjamin B. Yellen, "Martensitic Transformations in Binary Colloidal Monolayers", Soft Matter, 2015 [doi[abs].

  21. Charbonneau, P; Jin, Y; Parisi, G; Zamponi, F, "Hopping and the Stokes-Einstein relation breakdown in simple glass formers.", Proceedings of the National Academy of Sciences of USAOctober,, 2014, 111(42), 15025-15030 [5677], [doi[abs].

  22. Charbonneau, P; Kurchan, J; Parisi, G; Urbani, P; Zamponi, F, "Exact theory of dense amorphous hard spheres in high dimension. III. The full replica symmetry breaking solution", Journal of statistical mechanics (Online), 2014, 2014(10), P10009-P10009 [2549], [doi[abs].

  23. Marcoux, C; Byington, TW; Qian, Z; Charbonneau, P; Socolar, JE, "Emergence of limit-periodic order in tiling models.", Physical Review E - Statistical, Nonlinear, and Soft Matter PhysicsJuly,, 2014, 90(1), 012136 [2905], [doi[abs].

  24. Fusco, D; Charbonneau, P, "Competition between monomeric and dimeric crystals in schematic models for globular proteins.", The Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces and BiophysicalJuly,, 2014, 118(28), 8034-8041 [jp5011428], [doi[abs].

  25. Fusco, D; Barnum, TJ; Bruno, AE; Luft, JR; Snell, EH; Mukherjee, S; Charbonneau, P, "Statistical analysis of crystallization database links protein physico-chemical features with crystallization mechanisms.", PloS one, 2014, 9(7), e101123 [repository], [doi[abs].

  26. Charbonneau, P; Kurchan, J; Parisi, G; Urbani, P; Zamponi, F, "Fractal free energy landscapes in structural glasses.", Nature CommunicationsJanuary,, 2014, 5, 3725 [doi[abs].

  27. Fusco, D; Headd, JJ; De Simone, A; Wang, J; Charbonneau, P, "Characterizing protein crystal contacts and their role in crystallization: rubredoxin as a case study", Soft Matter, 2014, 10(2), 290-302 [Gateway.cgi], [doi[abs].

  28. Charbonneau, B; Charbonneau, P; Jin, Y; Parisi, G; Zamponi, F, "Dimensional dependence of the Stokes-Einstein relation and its violation", Journal of Chemical Physics, 2013, 139(16), 164502 [6073], [doi[abs].

  29. Charbonneau, B; Charbonneau, P; Tarjus, G, "Geometrical frustration and static correlations in hard-sphere glass formers", Journal of Chemical Physics, 2013, 138(12), 12A515 [4445], [doi[abs].

  30. Charbonneau, P; Corwin, EI; Parisi, G; Zamponi, F, "Universal microstructure and mechanical stability of jammed packings.", Physical Review LettersNovember,, 2012, 109(20), 205501 [23215504], [doi[abs].

  31. Zhang, K; Charbonneau, P, "[N]pT ensemble and finite-size-scaling study of the critical isostructural transition in the generalized exponential model of index 4.", Physical Review E - Statistical, Nonlinear, and Soft Matter PhysicsOctober,, 2012, 86(4 Pt 1), 042501 [23214631], [doi[abs].

  32. Charbonneau, P; Ikeda, A; Parisi, G; Zamponi, F, "Dimensional study of the caging order parameter at the glass transition.", Proceedings of the National Academy of Sciences of USAAugust,, 2012, 109(35), 13939-13943 [22891303], [doi[abs].

  33. Zhang, K; Charbonneau, P, "[N]pT Monte Carlo simulations of the cluster-crystal-forming penetrable sphere model.", Journal of Chemical PhysicsJune,, 2012, 136(21), 214106 [22697529], [doi[abs].

  34. Bergin, SM; Chen, YH; Rathmell, AR; Charbonneau, P; Li, ZY; Wiley, BJ, "The effect of nanowire length and diameter on the properties of transparent, conducting nanowire films.", Nanoscale, 2012, 4(6), 1996-2004 [22349106], [doi[abs].

  35. Zhang, K; Charbonneau, P, "Erratum: [N]pT ensemble and finite-size-scaling study of the critical isostructural transition in the generalized exponential model of index 4", Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 2012, 86(6) [doi].

  36. Zhang, K; Charbonneau, P, "[N]pT ensemble and finite-size-scaling study of the critical isostructural transition in the generalized exponential model of index 4", Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 2012, 86(4), 042501 [23214631], [doi[abs].

  37. Charbonneau, B; Charbonneau, P; Tarjus, G, "Geometrical frustration and static correlations in a simple glass former", Physical Review Letters, 2012, 108(3), 035701 [2494], [doi[abs].

  38. Charbonneau, P; Ikeda, A; Parisi, G; Zamponi, F, "Glass transition and random close packing above three dimensions.", Physical Review LettersOctober,, 2011, 107(18), 185702 [22107645], [doi[abs].

  39. Zhang, K; Charbonneau, P, "Monte Carlo approach for studying microphases applied to the axial next-nearest-neighbor Ising and the Ising-Coulomb models", Physical Review B - Condensed Matter and Materials Physics, 2011, 83(21), 214303 [1405], [doi[abs].

  40. Zhang, K; Charbonneau, P; Mladek, BM, "Reentrant and isostructural transitions in a cluster-crystal former.", Physical Review LettersDecember,, 2010, 105(24), 245701 [21231534], [doi[abs].

  41. Zhang, K; Charbonneau, P, "Monte carlo study of the axial next-nearest-neighbor Ising model.", Physical Review LettersMay,, 2010, 104(19), 195703 [20866979], [doi[abs].

  42. Charbonneau, P; Ikeda, A; van Meel, JA; Miyazaki, K, "Numerical and theoretical study of a monodisperse hard-sphere glass former.", Physical Review E - Statistical, Nonlinear, and Soft Matter PhysicsApril,, 2010, 81(4 Pt 1), 040501 [20481668], [doi[abs].

  43. Jin, Y; Charbonneau, P; Meyer, S; Song, C; Zamponi, F, "Application of Edwards' statistical mechanics to high-dimensional jammed sphere packings", Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 2010, 82(5), 051126 [repository], [doi[abs].

  44. Meel, JAV; Charbonneau, B; Fortini, A; Charbonneau, P, "Hard-sphere crystallization gets rarer with increasing dimension", Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 2009, 80(6), 061110 [repository], [doi[abs].

  45. Meel, JAV; Frenkel, D; Charbonneau, P, "Geometrical frustration: A study of four-dimensional hard spheres", Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 2009, 79(3), 030201(R) [1775], [doi[abs].

  46. Charbonneau, P; Das, C; Frenkel, D, "Dynamical heterogeneity in a glass-forming ideal gas", Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 2008, 78(1), 011505 [3704], [doi[abs].

  47. Mladek, BM; Charbonneau, P; Likos, CN; Frenkel, D; Kahl, G, "Multiple occupancy crystals formed by purely repulsive soft particles", Journal of Physics: Condensed Matter, 2008, 20(49), 494245 [doi[abs].

  48. Mladek, BM; Charbonneau, P; Frenkel, D, "Phase coexistence of cluster crystals: Beyond the gibbs phase rule", Physical Review Letters, 2007, 99(23), 235702 [2979], [doi[abs].

  49. Charbonneau, P; Reichman, DR, "Dynamical heterogeneity and nonlinear susceptibility in supercooled liquids with short-range attraction", Physical Review Letters, 2007, 99(13), 135701 [1657], [doi[abs].

  50. Charbonneau, P; Reichman, DR, "Systematic characterization of thermodynamic and dynamical phase behavior in systems with short-ranged attraction", Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 2007, 75(1), 011507 [0604428], [doi[abs].

  51. Charbonneau, P; Frenkel, D, "Gas-solid coexistence of adhesive spheres", Journal of Chemical Physics, 2007, 126(19), 196101 [0703378], [doi[abs].

  52. Charbonneau, P; Reichman, DR, "Phase behavior and far-from-equilibrium gelation in charged attractive colloids", Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 2007, 75(5), 050401(R) [0604430], [doi[abs].

  53. Reichman, DR; Charbonneau, P, "Mode-coupling theory", Journal of Statistical Mechanics: Theory and Experiment, 2005(5), 267-289 [0511407], [doi[abs].

  54. Chamon, C; Charbonneau, P; Cugliandolo, LF; Reichman, DR; Sellitto, M, "Out-of-equilibrium dynamical fluctuations in glassy systems", Journal of Chemical Physics, 2004, 121(20), 10120-10137 [0401326], [doi[abs].

  55. Barden, CJ; Charbonneau, P; III, HFS, "Group 13-group 16 heterocubanes [RM(μ3-E)]4 (R = H, CH3; M = Al, Ga, In; E = O, S, Se, Te) and group 13 cubanes [RM(μ3-M)]4 (R = F, Cl, CH3, NO2; M = Al, Ga, In): A structural study", Organometallics, 2002, 21(17), 3605-3609 [doi[abs].

  56. Charbonneau, P; Jean-Claude, B; Whitehead, MA, "Synthesis of a prodrug: A semi-empirical PM3 study", Journal of Molecular Structure: THEOCHEM, 2001, 574, 85-91 [doi[abs].

  57. Spivey, AC; Charbonneau, P; Fekner, T; Hochmuth, DH; Maddaford, A; Malardier-Jugroot, C; Redgrave, AJ; Whitehead, MA, "Energy barriers to rotation in axially chiral analogues of 4-(dimethylamino)pyridine", The Journal of Organic Chemistry, 2001, 66(22), 7394-7401 [doi[abs].

Papers Accepted

  1. Patrick Charbonneau, Eric I. Corwin, Giorgio Parisi, and Francesco Zamponi, "Jamming Criticality Revealed by Removing “Bucklers”", Physical Review Letters, 2015 [1411.3975v1[abs].

Papers Submitted

  1. Charbonneau, P; Jin, Y; Parisi, G; Rainone, C; Seoane, B; Zamponi, F, "Numerical detection of the Gardner transition in a mean-field glass former.", Physical Review E - Statistical, Nonlinear, and Soft Matter PhysicsJuly,, 2015, 92(1), 012316 [1501.07244], [doi[abs].

  2. Y. Jin, P. Charbonneau, "Mapping the arrest of the random Lorentz gas to the dynamical transition of simple glass formers", 2014 [0688[abs].