Chemistry Faculty: Publications since January 2008

Beratan, David N.

  1. Gerard Zuber, Peter Wipf, and D.N. Beratan, "Exploring the Chiral Information of the Optical Activity Tensor by Anisotropic Rayleigh Optical Activity Scattering", ChemPhysChem, 2008(9), 265-271.
  2. J.M. Parks, R.K. Kondru, H. Hua, D.N. Beratan and W. Yang, "Hepatitis C virus NS5B polymerase: Important roles of the internal energy and van der Waals interactions from QM/MM calculations", J.Phys.Chem.B, 2008(112), 3168-3176.
  3. D. Xiao, W. Yang and D.N. Beratan, "Inverse molecular design in a tight-binding framework", J. Chem. Phys, 2008(129), 044106.
  4. D.N. Beratan and I.A. Balabin, "Heme-copper oxidases use tunneling pathways", Proc. Natl. Acad. Sci. USA, 2008(105), 403-404.
  5. D.N. Beratan, "Methods and systems for selecting molecular structures,” provisional patent application, submitted 2/16/07; patent filed 6/12/08", 2008.
  6. I.A. Balabin, D.N. Beratan, and S.S. Skourtis, "The persistence of structure over fluctuations in biological electron-transfer reactions", Phys. Rev. Lett., 2008(101), 158102 (Cover Article.).
  7. S. Keinan, M.J. Therien, D.N. Beratan and W. Yang, "Molecular design of porphyrin based nonlinear optical materials", J. Phys. Chem. A, 2008(112), 12203-12207.
  8. S.S. Skourtis, D.N. Beratan, R. Naaman, A. Nitzan, and D.H. Waldeck, "Chiral Control of electron transmission through molecules", Phys. Rev. Lett., 2008(101), 238103.
  9. E. Hatcher, A. Balaeff, S. Keinan, R.Venkatramani, and D.N. Beratan, "PNA versus DNA: effects of structural fluctuations on electronic structure and hole transport mechanisms", J. Am. Chem. Soc., 2008(130), 11752-11761.
  10. D. Balamurugan, W. Yang, and D.N. Beratan, "Exploring chemical space with discrete, gradient and hybrid optimization methods", J. Chem. Phys., 2008(129), 174105.
  11. X. Hu, D.N. Beratan, and W. Yang, "A gradient-directed Monte Carlo approach to molecular design", J. Chem. Phys., 2008(129), 064102.
  12. W. He, E. Hatcher, A. Balaeff, D. Beratan, M. Madrid, R. Gil, C. Achim, "Solution structure of a peptide nucleic acid from NMR Data: features and limitations", J. Am. Chem. Soc., 2008(130), 13264-13273.
  13. S. Keinan, W.D. Paquette, J.J. Skoko, D.N. Beratan, W. Yang, S. Shinde, P.A. Johnston, J.S. Lazo, and P. Wipf, "Computational design, synthesis and biological evaluation of para-quinoid-based inhibitors for redox regulation of the dual-specificity phosphatase Cdc25B", Org. Biomol. Chem, 2008(6), 3256-3263 (Cover Article.).
  14. D. Xiao, F. Bulat, W. Yang, D.N. Beratan, "A donor-nanotube paradigm for nonlinear optical materials", Nano Lett., 2008(8), 2814-2818.
  15. P. Mukhopadhyay, G. Zuber, and D.N. Beratan, "Characterizing aqueous solution conformations of a peptide backbone with theoretical analysis of the Raman optical activity spectra", Biophys. J., 2008(95), 5574-5586.
  16. I.A. Balabin, D.N. Beratan, and S.S. Skourtis, "The chemical roles of water in biological electron transfer", in Wiley Encyclopedia of Chemical Biology, Vol. 1, edited by T.P. Begley , 2008 [available here].

Bonk, James F.   (search)

  1. Charkoudian, Louise K.; Heymann, Jared J.; Adler, Marc J.; Haas, Kathryn L.; Mies, Kassy A.; Bonk, James F., "Forensics as a Gateway: Promoting Undergraduate Interest in Science, and Graduate Student Professional Development through a First-Year Seminar Course", J. Chem. Educ., 2008, 85, 807 [html].

Charbonneau, Patrick

  1. J. A. van Meel, B. Charbonneau, A. Fortini, P. Charbonneau, "Hard sphere crystallization gets rarer with increasing dimension", Physical Review E, 2009.
  2. K. van Meel, D. Frenkel, and P. Charbonneau, "Crystallization Without Geometrical Frustration: A Study of Four-Dimensional Hard Hyperspheres Nucleation", Physical Review E, 2009, 79, 030201(R) [PhysRevE.79.030201].
  3. Charbonneau, P. and Das, C. and Frenkel, D., "Dynamical heterogeneity in a glass-forming ideal gas", Physical Review E, 2008, 78, 011505 [abs].

Chen, Xin

  1. Yan Li, Quan Peng, Dija Selimi, Qi Wang, Amy Charkowski, Xin Chen, Ching-Hong Yang, "The plant phenolic compound p-coumaric acid represses the Dickeya dadantii type III secretion system", Applied & Environmental Microbiology, 2008.
  2. Warren S. Warren, Elizabeth Jenista, Rosa Tamara Branca, Xin Chen, "Hyperpolarized magnetic resonance using true singlet eigenstates", Science, 2008.
  3. Xin Chen, David M. Gooden, Eric J. Toone, "An efficient large-scale synthesis of 4-[3-(trifluoro-methyl)-3H-diazirin-3-yl]benzoic acid", Synthesis, 2008.
  4. John J. Arnold, Yash Choksi, Xin Chen, Atsushi Shimazaki, John Hatten, Eric J. Toone, David L. Epstein, Pratap Challa, "Intraocular pressure response to novel SA9000 pro-drugs in rabbits", Journal of Ocular Pharmacology and Therapeutics, 2008.
  5. Adnan M. M. Mjalli, Robert C. Andrews, Ramesh Gopalaswamy, Anitha Hari, Kwasi Avor, Ghassan Qabaja, Xiao-Chuan Guo, Suparna Gupta, David R. Jones, Xin Chen, "Azole derivatives and fused bicyclic azole derivatives as therapeutic agents", 2008 (Patent Number: US 7,361,678.).
  6. Weslyn C. Ward, Erin C. Lamb, David Gooden, Xin Chen, David J. Burinsky, John D. Simon, "Quantification of naturally occurring pyrrole acids in melanosomes", Photochemistry & Photobiology, 2008(84), 700-705.

Chilkoti, Ashutosh

  1. D. L. Nettles and A. Chilkoti and L. A. Setton, "Early Metabolite Levels Predict Long-Term Matrix Accumulation for Chondrocytes in Elastin-like Polypeptide Biopolymer Scaffolds", Tissue Engineering Part AAugust,, 2009, 15(8), 2113 -- 2121 [abs].
  2. T. Christensen and M. Amiram and S. Dagher and K. Trabbic-carlson and M. F. Shamji and L. A. Setton and A. Chilkoti, "Fusion order controls expression level and activity of elastin-like polypeptide fusion proteins", Protein ScienceJuly,, 2009, 18(7), 1377 -- 1387 [abs].
  3. A. Hucknall and A. J. Simnick and R. T. Hill and A. Chilkoti and A. Garcia and M. S. Johannes and R. L. Clark and S. Zauscher and B. D. Ratner, "Versatile synthesis and micropatterning of nonfouling polymer brushes on the wafer scale", BiointerphasesJune,, 2009, 4(2), FA50 -- FA57 [abs].
  4. A. Hucknall and S. Rangarajan and A. Chilkoti, "In Pursuit of Zero: Polymer Brushes that Resist the Adsorption of Proteins", Advanced MaterialsJune,, 2009, 21(23), 2441 -- 2446 [abs].
  5. S. Zauscher and A. Chilkoti, "Biological Applications of Polymer Brushes", BiointerphasesJune,, 2009, 4(2), FA1 -- FA2.
  6. A. Hucknall and D. H. Kim and S. Rangarajan and R. T. Hill and W. M. Reichert and A. Chilkoti, "Simple Fabrication of Antibody Microarrays on Nonfouling Polymer Brushes with Femtomolar Sensitivity for Protein Analytes in Serum and Blood", Advanced MaterialsMay,, 2009, 21(19), 1968 -- 1971 [abs].
  7. G. J. Nusz and A. C. Curry and S. M. Marinakos and A. Wax and A. Chilkoti, "Rational Selection of Gold Nanorod Geometry for Label-Free Plasmonic Biosensors", Acs NanoApril,, 2009, 3(4), 795 -- 806 [abs].
  8. Y. Q. Wu and J. A. Mackay and J. R. Mcdaniel and A. Chilkoti and R. L. Clark, "Fabrication of Elastin-Like polypeptide Nanoparticles for Drug Delivery by Electrospraying", BiomacromoleculesJanuary,, 2009, 10(1), 19 -- 24 [abs].
  9. B. Kim and A. Chilkoti, "Allosteric Actuation of Inverse Phase Transition of a Stimulus-Responsive Fusion Polypeptide by Ligand Binding", Journal Of The American Chemical SocietyDecember,, 2008, 130(52), 17867 -- 17873 [abs].
  10. Y. H. Cho and Y. J. Zhang and T. Christensen and L. B. Sagle and A. Chilkoti and P. S. Cremer, "Effects of Hofmeister Anions on the Phase Transition Temperature of Elastin-like Polypeptides", Journal Of Physical Chemistry BNovember,, 2008, 112(44), 13765 -- 13771 [abs].
  11. F. Xu and H. M. Joon and K. Trabbic-carlson and A. Chilkoti and W. Knoll, "Surface plasmon optical study of the interfacial phase transition of elastinlike polypeptide grafted on gold", BiointerphasesSeptember,, 2008, 3(3), 66 -- 74 [abs].
  12. D. Chow and M. L. Nunalee and D. W. Lim and A. J. Simnick and A. Chilkoti, "Peptide-based biopolymers in biomedicine and biotechnology", Materials Science \& Engineering R-reportsSeptember,, 2008, 62(4), 125 -- 155 [abs].
  13. J. J. Mock and R. T. Hill and A. Degiron and S. Zauscher and A. Chilkoti and D. R. Smith, "Distance-dependent plasmon resonant coupling between a gold nanoparticle and gold film", Nano LettersAugust,, 2008, 8(8), 2245 -- 2252 [abs].
  14. A. Valiaev and D. W. Lim and S. Schmidler and R. L. Clark and A. Chilkoti and S. Zauscher, "Hydration and conformational mechanics of single, end-tethered elastin-like polypeptides", Journal Of The American Chemical SocietyAugust,, 2008, 130(33), 10939 -- 10946 [abs].
  15. M. F. Shamji and J. Chen and A. H. Friedman and W. J. Richardson and A. Chilkoti and L. A. Setton, "Synthesis and characterization of a thermally-responsive tumor necrosis factor antagonist", Journal Of Controlled ReleaseAugust,, 2008, 129(3), 179 -- 186 [abs].
  16. D. L. Nettles and K. Kitaoka and N. A. Hanson and C. M. Flahiff and B. A. Mata and E. W. Hsu and A. Chilkoti and L. A. Setton, "In situ crosslinking elastin-like polypeptide gels for application to articular cartilage repair in a goat osteochondral defect model", Tissue Engineering Part AJuly,, 2008, 14(7), 1133 -- 1140 [abs].
  17. M. F. Shamji and L. Whitlatch and A. H. Friedman and W. J. Richardson and A. Chilkoti and L. A. Setton, "An injectable and in situ-gelling biopolymer for sustained drug release following perineural administration", SpineApril,, 2008, 33(7), 748 -- 754 [abs].
  18. G. J. Nusz and S. M. Marinakos and A. C. Curry and A. Dahlin and F. Hook and A. Wax and A. Chilkoti, "Label-free plasmonic detection of biomolecular binding by a single gold nanorod", Analytical ChemistryFebruary,, 2008, 80(4), 984 -- 989 [abs].
  19. D. W. Lim and D. L. Nettles and L. A. Setton and A. Chilkoti, "In situ cross-linkinig of elastin-like polypeptide block copolymers for tissue repair", BiomacromoleculesJanuary,, 2008, 9(1), 222 -- 230 [abs].
  20. M. R. Dreher and A. J. Simnick and K. Fischer and R. J. Smith and A. Patel and M. Schmidt and A. Chilkoti, "Temperature triggered self-assembly of polypeptides into multivalent spherical micelles", Journal Of The American Chemical SocietyJanuary,, 2008, 130(2), 687 -- 694 [abs].
  21. J. A. Mackay and A. Chilkoti, "Temperature sensitive peptides: Engineering hyperthermia-directed therapeutics", International Journal Of Hyperthermia, 2008, 24(6), 483 -- 495 [abs].
  22. J. W. Pyhtila and H. W. Ma and A. J. Simnick and A. Chilkoti and A. Wax, "Analysis of long range correlations due to coherent light scattering from in-vitro cell arrays using angle-resolved low coherence interferometry", Journal Of Biomedical Optics, 2006, 11(3) [abs].
  23. Leggett, G.J. and Chilkoti, A. and Castner, D.G. and Ratner, B.D. and Vickerman, J.C., "Direct emission of molecular fragments during the sputtering of poly(4-hydroxystyrene) and determination of ion structures using tandem secondary ion mass spectrometry", Int. J. Mass Spectrom. Ion Process. (Netherlands), 2, 108(1), 29 - 39 [0168-1176(91)87004-K] [abs].

Coltart, Don M.

  1. Zhou, G.; Yost, J. M.; Sauer, S.; Coltart, D. M., "A Facile and Efficient Anti-Selective Four-Component Direct Aldol Addition via Chemoselective Thioester Enolate Formation", Synfacts, 2008, 56.
  2. Kohler, M. C.; Yost, J. M.; Garnsey, M. R.; Coltart., D. M., "Proximity Accelerated Organocatalytic Soft Enolization of Thioesters: Development of a Biomimetic Asymmetric Mannich Reaction", Angew. Chem. Int. Ed., 2008.
  3. Zhou, G.; Lim, D.; Coltart, D. M., "A Practical Synthesis of beta-Keto Thioesters via Direct Crossed-Claisen Coupling of Thioesters and N-Acylbenzotriazoles", Synthesis, 2008.
  4. Garnsey, M. R.; Wengryniuk, S. E.; Coltart, D. M., "Triphenylmethanethiol", Encyclopedia of Reagents for Organic Synthesis, 2008 (In Press.).
  5. Yost, J. M.; Knight, J. D.; Coltart, D. M., "Tris(2-carboxyethyl)phosphine", Encyclopedia of Reagents for Organic Synthesis, 2008 (In Press.).
  6. D.M. Coltart, "Provisional patent application filed by the TTO (Brandy L. Salmon): Chiral auxiliaries for asymmetric alpha-functionalization of aldehydes and ketones. Currently being processed as a full patent application.", 2008.
  7. Lim, D.; Zhou, G.; Livanos, A. E.; Fang, F.; Coltart, D. M., "MgBr2-OEt2-Promoted Coupling of Ketones and Activated Acyl Donors via Soft Enolization: A Practical Synthesis of 1,3-Diketones", Synthesis, 2008, 2148-2152.
  8. Lim, D.; Coltart, D. M., "Simple and Efficient Asymmetric alpha-Alkylation and alpha,alpha-Bisalkylation of Acyclic Ketones Using Chiral N-Amino Cyclic Carbamate Hydrazones", Angew. Chem. Int. Ed., 2008, 47, 5207-5210.
  9. Zhou, G.; Lim, D.; Coltart, D. M., "Direct Carbon–Carbon Bond Formation via Chemoselective Soft Enolization of Thioesters: A Remarkably Simple and Versatile Crossed-Claisen Reaction Applied to the Synthesis of LY294002", Org. Lett., 2008, 10, 3809-3812.
  10. Tarsis, E. T.; Gromova, A.; Lim, D.; Zhou, G.; Coltart, D. M., "Overcoming the Limitations of the Baylis-Hillman Reaction: A Rapid and General Synthesis of alpha-Alkenyl beta-Hydroxy Thioesters", Org. Lett., 2008, 10, 4819-4822.
  11. Yost, J. M.; Garnsey, M. R.; Kohler, M. C.; Coltart, D. M., "Direct Carbon–Carbon Bond Formation via Soft Enolization of Thioesters: An Operationally Simple Mannich Addition Reaction", Synthesis (Invited paper; special 40th anniversary issue), 2008, 56-58.

Craig, Stephen L.

  1. H. Juwarker, J. M. Lenhardt, J. C. Castillo, E. Zhao, S. Krishnamurthy, R. M. Jamiolkowski, K.-H. Kim, and S. L. Craig, "Anion Binding of Short, Flexible Aryl Triazole Oligomers", J. Org. Chem., 2009, ASAP [jo901966f].
  2. X. Chen, C. Regan, S. L. Craig, E. Krenske, K. N. Houk, W. Jorgensen, and J. I. Brauman, "Steric and Solvation Effects in Ionic SN2 Reactions", J. Am. Chem. Soc., 2009, 131, 16162-16170 [ja9053459].
  3. J. M. Lenhardt, S. L. Craig, "Force Probes in a Bottle", Nature Nanotech., 2009, 4, 284-285 [html].
  4. J. M. Lenhardt, A. L. Black, S. L. Craig, "gem-Dichlorocyclopropanes as Abundant and Efficient Mechanophores in Poly(butadiene) Copolymers under Mechanical Stress", J. Am. Chem. Soc., 2009, 131, 10818-10819 [ja9036548].
  5. M. Ams, D. Ajami, S. L. Craig, J.-S. Yang, J. Rebek, Jr, "Too Small, Too Big, and Just Right – Optical Sensing of Molecular Conformations in Self-assembled Capsules", J. Am. Chem. Soc., 2009, 131, 13190-13191 [ja903198v].
  6. H. E. Achneck, M. J. Serpe, R. Jamiolkowski, L. M. Eibest, C. A. Milano, S. L. Craig, J. H. Lawson, "Regenerating Titanium Ventricular Assist Device Surfaces after Gold/Palladium Coating for Scanning Electron Microscopy", Microscopy Res. Tech., 2009, Early View [abstract].
  7. S. L. Craig, "From Ionic Liquids to Supramolecular Polymers", Angew. Chem. Int. Ed., 2009, 48(15), 2645-2647 [anie.200805603].
  8. M. J. Serpe, J. R. Whitehead, M. Rivera, R. L. Clark, and S. L. Craig, "Single-Molecule Force Spectroscopy Studies of DNA-Based Reversible Polymer Bridging: Surface Robustness and Homogeneity", Colloids and Surfaces A: Physicochem. Eng. Aspects, 2009, 346, 20-27 [science].
  9. M. J. Serpe, F. R. Kersey, J. R. Whitehead, S. M. Wilson, R. L. Clark, and S. L. Craig, "A Simple and Practical Spreadsheet-Based Method to Extract Single-Molecule Dissociation Kinetics from Variable Loading-Rate Force Spectroscopy Data", J. Phys. Chem. C, 2008, 112, 19163-19167 [jp806649a].
  10. M. J. Serpe, M. Rivera, F. R. Kersey, R. L. Clark, and S. L. Craig, "Time and Distance Dependence of Intersurface Self-Assembly Followed by Single Molecule Force Spectroscopy", Langmuir, 2008, 24, 4738-4742 [abs].
  11. D. M. Loveless, F. R. Kersey, S. L. Craig, "Supramolecular Control of Mechanical Properties in Single Molecules, Interfaces, and Macroscopic Materials", in Molecular Recognition and Polymers: Control of Polymer Structure and Self-Assembly, edited by V. Rotello and S. Thayumanavan , 2008, 416, Wiley.
  12. S. L. Craig, "Cool as a Cucumber", Angew. Chem. Int. Ed., 2008, 47(46), 8776-8777 [anie.200802334].
  13. H. Juwarker, J. M. Lenhardt, D. Pham, and S. L. Craig, "1,2,3-Triazole C-H•••Cl- Contacts Guide Anion Binding and Concomitant Folding in 1,4-Diaryl Triazole Oligomers", Angew. Chem. Int. Ed., 2008, 47, 3740-3743 [ABSTRACT].

Crumbliss, Alvin L.

  1. A. L. Crumbliss and J. M. Harrington, "Iron Sequestration by Small Molecules: Thermodynamic and Kinetic Studies of Natural Siderophores and Synthetic Model Compounds", Adv. Inorg. Chem, 2008.
  2. J. J. Heymann, M. Gabričević, T. A. Mietzner, and A. L. Crumbliss, "Kinetics and Mechanism of Exogenous Anion Exchange in FeFbpA-NTA: Periplasmic Anion Lability and a Model for Acquisition Through Non-transferrin Bound Iron Sources", Biochemistry, 2008.
  3. K.D. Weaver, J.J. Heymann, A. Mehta, P.L. Roulhac, D.S. Anderson, A.J. Norwalk, P. Adhikari, T. A. Mietzner, M.C. Fitzgerald, A.L. Crumbliss, "Ga3+ as a mechanistic probe in Fe3+ transport: Characterization of Ga3+ interaction with FbpA", J. Biol. Inorg. Chem., 2008, 13, 887.
  4. E. M. Tristani, D. B. Chesnut, and A. L. Crumbliss, "General Chemistry and the NO2 / N2O4 System: It’s Not as Simple as it Appears (and That Can Make it an Enrichment Tool)", J. Chem. Ed., 2008.
  5. K. A. Mies, P. Gebhardt, U. Möllmann, and A. L. Crumbliss, "Synthesis, Siderophore Activity and Iron(III) Chelation Chemistry of a Novel Mono-hydroxamate, Bis-Catecholate Siderophore Mimic: Nα,-Nε-Bis[2,3-dihydroxybenzoyl]-L-lysyl-(γ-N-methyl-N-hydroxyamido)-L-glutamic acid", J. Inorg. Biochem, 2008, 102, 850.
  6. P. L. Roulhac, K. D. Weaver, P. Adhikari, D. S. Anderson, T. A. Mietzner, A. L. Crumbliss, and M. C. Fitzgerald, "“Ex Vivo Analysis of Synergistic Anion Binding to FbpA in Gram-Negative Bacteria", Biochemistry, 2008, 47, 4298.
  7. S. Dhungana and A.L. Crumbliss, "Uv-visible Spectroelectrochemistry of Selected Iron Containing Proteins", in Spectroelectrochemistry, edited by W. Kaim and A. Klein , 2008, Royal Society of Chemistry, Cambridge, UK ((Invited).).

De Cruz, Adele   (search)

  1. A. De Cruz, "Investigation of the Er:YAG Laser at 2.94 μm to Remove Lichens Growing on Stone", Studies in Conservation, December, 2009 [php] [author's comments].
  2. A. De Cruz, "., Prove di pulitura a confronto: Metodi chimici e fisici.", in . Congress: Un Progetto di Restauro Intergratto, 2009, Opera della Primaziale Pisana, [abs] [author's comments].

Fischer, Martin C

  1. M. C. Fischer, H. C. Liu, I. R. Piletic, Y. Escobedo-Lozoya, R. Yasuda, and W. S. Warren, "Self-phase modulation signatures of neuronal activity", Opt. Lett., 2008, 33, 219.
  2. W. S. Warren, M. C. Fischer, D. Fu, T. Ye, I. Piletic, and T. Matthews, "New nonlinear signatures in spectroscopy and imaging", Proc. of the Conf. on Lasers and Electro-Optics, 2008, JWC1.
  3. I. R. Piletic, M. C. Fischer, P. Samineni, G. Yurtsever, and W. S. Warren, "Rapid pulse shaping with homodyne detection for measuring nonlinear optical signals", Opt. Lett., 2008(33), 1482.
  4. M. C. Fischer, H. C. Liu, I. R. Piletic, and W. S. Warren, "Simultaneous self-phase modulation and two-photon absorption measurement by a spectral homodyne Z-scan method", Opt. Expr, 2008(16), 4192.
  5. K. Emami, R. V. Cadman, J. M. Woodburn, M. C. Fischer, S. J. Kadlecek, J. Zhu, S. Pickup, R. A. Guyer, M. Law, V. Vahdat, M. E. Friscia, M. Ishii, J. Yu, W. B. Gefter, J. B. Shrager, and R. R. Rizi, "Early Changes of Lung Function and Structure in an Elastase Model of Emphysema – A Hyperpolarized 3He MRI Study", J. Applied Physiology, 2008(104), 773.

Fitzgerald, Michael C.

  1. Roulhac, P.L., Weaver, K.D., Adhikari, P., Anderson, D.S., Mietzner, T.A., Crumbliss, A.L., and Fitzgerald, M.C., "Ex Vivo Analysis of Synergistic Anion Binding to FbpA in Gram-Negative Bacteria", Biochemistry, 2008(47), 4298-4305.
  2. West, G., Tang, L., and Fitzgerald, M.C., "Thermodynamic Analysis of Protein Stability and Ligand Binding using a Chemical Modification- and Mass Spectrometry-Based Strategy", Analytical Chemistry, 2008(80), 4175-7185.
  3. Fitzgerald, M.C. and West, G.M., "Painting Proteins with Covalent Labels: What’s in the Picture", Journal of the American Society for Mass Spectrometry, 2008.
  4. PATENT: Oas, T.G., Ghaemmaghami, S., Powell, K.D., and Fitzgerald, M.C., "Quantitative, High-Throughput Screening Method for Protein Stability; U.S. Patent Divisional Application Serial No. 11/634,019, based on U.S. Patent No. 6,734,023. Issued August, 2008", 2008.
  5. Hopper, E.D., Roulhac, P.L., Campa, M.J., Patz, E.F., and Fitzgerald, M.C., "Throughput and Efficiency of a Mass Spectrometry-Based Screening Assay for Protein-Ligand Binding Detection", Journal of the American Society for Mass Spectrometry, 2008(19), 1303-1311.
  6. Weaver, K.D., Heymann, J.J., Mehta, A., Roulhac, P.L., Anderson, D.S., Nowalk, A.J., Adhikari, P., Mietzner, T.A., Fitzgerald, M.C., and Crumbliss, A.L., "Ga+3 as a Mechanistic Probe of Fe+3 Transport: Characterization of Ga+3 Interaction with FbpA", Journal of Biological Inorganic Chemistry, 2008(13), 887-898.
  7. Hopper, E.D., Pittman, A.M., Fitzgerald, M.C., and Tucker, C.L., "In Vivo and In Vitro Examination of Stability of Primary Hyperoxaluria-Associated Human Alanine:glyoxylate Aminotransferase", Journal of Biological Chemistry, 2008(283), 30493-30502.
  8. Fitzgerald, M.C., Tang, L., and Hopper, E.D, "Thermodynamic Analysis of Protein Folding and Ligand Binding by SUPREX", in Comprehensive Analytical Chemistry; Protein Mass Spectrometry, Julian P. Whitelegge, edited by D. Barcelo , 2008, 52, 127-149, Elsevier BV: Elsivier (Will be released in 2009.).

Franz, Katherine J.

  1. K.L. Haas and K.J. Franz, "Application of Metal Coordination Chemistry To Explore and Manipulate Cell Biology", Chem. Rev., 2009, Publication Date (Web): August 28, 2009 [cr900134a].
  2. Louise K. Charkoudian, Tzvete Dentchev, Nina Lukinova, Natalie Wolkow, Joshua L. Dunaief and Katherine J. Franz, "Iron Prochelator BSIH Protects Retinal Pigment Epithelial Cells against Cell Death Induced by Hydrogen Peroxide", J. Inorg. Biochem., 2008, 102, 2130–2135 (Young Investigator Special Issue on “Inorganic Biochemistry - The Next Generation”.) [001].
  3. Katie L. Ciesienski, Kathryn L. Haas, Marina G. Dickens, Yohannes T. Tesema, and Katherine J. Franz, "A Photolabile Ligand for Light-Activated Release of Caged Copper", J. Am. Chem. Soc., 2008, 130, 12246–12247 [ja8047442].
  4. Yohannes T. Tesema, David M. Pham, and Katherine J. Franz, "Counterions Influence Reactivity of Metal Ions with Cysteinyldopa Model Compounds", Inorg. Chem., 2008, 47(3), 1087 -1095 [ic701889w].
  5. K.J. Franz, "Copper Shares a Piece of the Pi", Nature Chem. Biol., 2008, 4(2), 85-6 [nchembio0208-85].

Hong, Jiyong

  1. Kim, H.; Park, Y.; Hong, J., "Stereoselective synthesis of 2,6-cis-tetrahydropyrans via tandem allylic oxidation/oxa-Michael reaction promoted by gem-disubstituent effect: stereoselective synthesis of (+)-neopeltolide macrolactone.", Angewandte Chemie International Edition, 2009.
  2. Yuan, L.; Seo, J.-S; Kang, N.; Keinan, S.; Steele, S. E.; Michelotti, G. A.; Wetsel, W. C.; Beratan, D. N.; Gong, Y.-D.; Lee, T. H.; Hong, J., "Identification of 3-hydroxy-2-(3-hydroxyphenyl)-4H-1-benzopyran-4-ones as isoform-selective PKC-zeta inhibitors and potential therapeutics for psychostimulant abuse", Molecular Biosystems, 2009 (Emerging Investigators Issue.).
  3. Lee, J.; Hong, J.; Nam, T. G.; Peters, E. C.; Orth, A. P.; Geierstanger, B. H.; Goldfinger, L. E.; Ginsberg, M. H.; Cho C. Y.; Schultz, P. G., "A small molecule inhibitor of α4 integrin-dependent cell migration", Bioorganic & Medicinal Chemistry, 2009, 17, 977-980.
  4. Kim, H.; Kasper, A. C.; Moon, E. J.; Park, Y.; Wooten, C. M.; Dewhirst, M. W.; Hong, J., "Nucleophilic addition of organozinc reagents to 2-sulfonyl cyclic ethers: stereoselective synthesis of manassantins A and B", Organic Letters, 2009, 11(1), 89-92.
  5. Kasper, A. C.; Moon, E. J.; Hu, X.; Park, Y.; Wooten, C. M.; Kim, H.; Yang, W.; Dewhirst, M. W.; Hong, J., "Analysis of HIF-1 inhibition by manassantin A and analogues with modified tetrahydrofuran configurations", Bioorganic & Medicinal Chemistry Letters, 2009, 19, 3783-3786 (Symposium-in-print honoring C. F. Barbas, 2009 Tetrahedron Young Investigator Award.).
  6. Kasper, A. C.; Baker, J. B.; Kim, H.; Hong, J., "The end game of chemical genetics: target identification", Future Medicinal Chemistry, 2009 (Review.).
  7. Kim, H.; Baker, J. B.; Lee, S.-U.; Park, Y.; Bolduc, K. L.; Park, H.-B.; Dickens, M. G.; Lee, D.-S.; Kim, Y.-C.; Kim, S. H.; Hong, J., "Stereoselective synthesis and osteogenic activity of subglutinols A and B", Journal of the American Chemical Society, 2009, 131(9), 3192–3194.
  8. Ying, Y.; Taori, K.; Kim, H.; Hong, J.; Luesch, H., "Total synthesis and molecular target of largazole, a histone deacetylase inhibitor", Journal of the American Chemical Society, 2008, 130(26), 8455-8459.
  9. Ying, Y.; Liu, Y.; Byeon, S. R.; Kim, H.; Luesch, H.; Hong, J., "Synthesis and activity of largazole analogues with linker and macrocycle modification", Organic Letters, 2008, 10(18), 4021-4024.
  10. Kim, D.; Lee, H.; Kim, K. W.; Park, J.; Kim, H.; Kim, S.; Hu, X.; Yang, W.; Hong, J., "A general strategy for construction of both 2,6-cis- and 2,6-trans-disubstituted tetrahydropyrans: substrate-controlled asymmetric total synthesis of (+)-scanlonenyne", Angewandte Chemie International Edition, 2008, 47(22), 4200-4203.
  11. Luesch, H.; Hong, J., "Methods and preparation of macrocyclic compounds (US Provisional Patent)", 2008.
  12. "Manassantin compounds and methods of making and using same technical field (US Provisional Patent)", 2008.

Ke, San Huang

  1. Felipe A. Bulat, San-Huang Ke, Weitao Yang, and Luise Couchman, "Lead-molecule coupling effects on the distortion-dependent conductance of carbon nanotubes", PHYSICAL REVIEW B, 2008(77), 153401.
  2. San-Huang Ke, Weitao Yang, and Harold U. Baranger, "Quantum-Interference-Controlled Molecular Electronics", Nano Letters, 2008(8 (10)), 3257-3261.
  3. Zi Li, Chong-Yu Wang, Xu Zhang, San-Huang Ke, and Weitao Yang, "First-principles study for transport properties of armchair carbon nanotubes with a double vacancy under strain", JOURNAL OF APPLIED PHYSICS, 2008(103), 113714.
  4. Zi Li, Chong-YuWang, Xu Zhang, San-Huang Ke, and Weitao Yang, "Transport properties of an armchair carbon nanotube with a double vacancy under stretching", J. Phys.: Condens. Matter, 2008(20), 345225.
  5. San-Huang Ke, Weitao Yang, S. Curtarolo, and H.U. Baranger, "Thermopower of Molecular Junctions: An ab initio Study", Nano Letters, 2008.

Liu, Jie   (search)

  1. Jianye Li, Qi Zhang, Lei An, Luchang Qin, Jie Liu, "8. Large-scale growth of millimeter-long single-crystalline ZnS nanobelts", Journal of Solid State Chemistry, 2008 (Accepted Manuscript, Available online.).
  2. Jianye Li, Jie Liu, Lung-Shen Wang and Robert P.H. Chang, "Physical and Electrical Properties of Chemical Vapor Grown GaN Nano- /Micro-Structures", Inorganic Chemistry, 2008.
  3. Dmitri A. Tsyboulski, Ye Hou, Nikta Fakhri, Saunab Ghosh, Ru Zhang, Sergei M. Bachilo, Liwei Chen, Matteo Pasquali, Jie Liu, and R. Bruce Weisman, "Do Inner Shells of Double-Walled Carbon Nanotubes Really Fluoresce?", Nature Nanotechnology, 2008.
  4. Haibin Chu, Jinyong Wang. Lei Ding, Yan Zhang, Dongning Yuan, Jie Liu and Yan Li, "Lighting up All Carbon Nanotubes Using Surface Enhanced Raman Spectra", Nature Nanotechnology, 2008.
  5. Lei Ding, Alexander Tselev, Jinyong Wang, Dongning Yuan, Haibin Chu, Thomas P. McNicholas, Yan Li and Jie Liu, "Selective growth of well aligned semiconducting single-walled carbon nanotubes", Nano Letter, 2008.
  6. Ye Hou, Jie Tang, Hongbo Zhang, Cheng Qian Yiyu Feng and Jie Liu, "Functionalized Few-Walled Carbon Nanotubes for Mechanical Reinforcement of Polymeric Composites", ACS Nano, 2008.
  7. Y. Y. Feng, H. B. Zhang, Y. Hou, T. P. McNicholas, D. N. Yuan, S. W. Yang, L. Ding, W. Feng, and J. Liu, "Room temperature purification of few-walled carbon nanotubes with high yield", ACS Nano, 2008, 2(8), 1634-1638.
  8. D. N. Yuan, L. Ding, H. B. Chu, Y. Y. Feng, T. P. McNicholas, and J. Liu, "Horizontally aligned single-walled carbon nanotube on quartz from a large variety of metal catalysts", Nano Letters, 2008(8), 2576-2579.
  9. Jianye li, Hongying Peng, Jie Liu, Henry O. Everitt, "Facile Gram-Scale Growth of Single-Crystalline Nanotetrapod-Assembled ZnO through a Rapid Process", European Journal of Inorganic Chemistry, 2008(20), 3172-3176.
  10. Lei Ding, Dongning Yuan, Jie Liu, "Growth of high-density parallel arrays of long single-walled carbon nanotubes on quartz substrates", Journal of the American Chemical Society, 2008, 130(16), 5428.
  11. E. Joselevich, H. Dai, J. Liu, K. Hata, A. H. Windle, "Carbon nanotube synthesis and organization", Carbon Nanotubes (TOPICS IN APPLIED PHYSICS), 2008, 111, 101-164.
  12. Alexander Tselev, Michael Woodson, Cheng Qian, and Jie Liu, "Microwave Impedance Spectroscopy of Dense Carbon Nanotube Bundles", Nano Letter, 2008, 8(1), 152-156.

McCafferty, Dewey G.

  1. D.M.Gooden, D.M. Schmidt, J.A. Pollock, A.M. Kabadi, and D.G. McCafferty, "Facile synthesis of substituted trans-2-arylcyclopropylamine inhibitors of the human histone demethylase LSD1 and monoamine oxidases A and B", Bioorg. Med. Chem. Lett., 2008, 18, 3047-3051.
  2. M. L. Bentley, E. C. Lamb, and D. G. McCafferty, "Mutagenesis Studies of Substrate Recognition and Catalysis in the Sortase A Transpeptidase from Staphylococcus aureus", J. Biol. Chem., 2008, 283, 14762-14771.

Reichert, William M

  1. H. L. Prichard and W. Reichert and B. Klitzman, "IFATS Collection: Adipose-Derived Stromal Cells Improve the Foreign Body Response", Stem Cells, 2008, 26(10), 2691 -- 2695 [abs].

Stapleton, Heather M.

  1. Stapleton, H.M. Kelly, S.M., Pei, R., Letcher, R.J., Gunsch, C.K., "Metabolism of Polybrominated Diphenyl Ethers (PBDEs) By Human Hepatocytes In vitro", Environmental Health Perspectives, 2009, (in press).
  2. Allen, J.G., McClean, M.D., Stapleton, H.M., Webster, T.F, "Longitudinal Analysis of Polybrominated Diphenyl Ethers (PBDEs) in Household Microenvironments: Characterization of Dust and Relationship to Indoor Air.", Environment International, 2008, 34(8), 1085-1091.
  3. Allen, J.G., McClean, M.D., Stapleton, H.M., Webster, T.F, "Linking PBDEs in House Dust to Consumer Products using X-Ray Fluorescence (XRF)", Environmental Science & Technology, 2008, 42(11), 4222-4228.
  4. Huwe, J.K., Hakk, H., Smith, D.J., Diliberto, J.J., Richardson, V., Stapleton, H.M., Birnbaum, L.S., "Comparative Absorption and Bioavailability of Polybrominated Diphenyl Ethers Following Ingestion Via Dust and Oil in Male Rats.", Environmental Science & Technology, 2008, 42(7), 2694-2700.
  5. Stapleton, H.M., Sjodin, A., Jones, R.S., Niehauser, S., Zhang, Y., Patterson, D.G., "Serum PBDE Levels in Occupationally Exposed Individuals in the United States", Environ Sci & Technol, 2008, 42(9), 3453-3458.
  6. Stapleton, H.M., Kelly, S.M., Allen, J.G., McClean, M.D., Webster, T.F., "Measurement of Polybrominated Diphenyl Ethers on Hand Wipes: Estimating Exposure from Hand to Mouth Contact", Environ Sci & Technol, 2008, 49(9), 3329-3334.
  7. Stapleton, H.M., and Dodder, Nathan G., "Photodegradation of Decabromodiphenyl Ether (BDE 209) in House Dust by Natural Sunlight", Environmental Chemistry & Toxicology, 2008, 27(2), 306-312.
  8. Stapleton,. H.M., Allen, J.G., Kelly, S.M., Konstantinov, A., Klosterhaus, S., Watkins, D., McClean, M.D., Webster, T.F., "Alternate and New Brominated Flame Retardants Detected in U.S. House Dust", Environmental Science & Technology, 2008, 42(18), 6910-6916, American Chemical Society.

Therien, Michael J.

  1. M. Nikiforov, U. Zerwek, P. Milde, C. Loppacher, T.-H. Park, H. T. Uyeda, M. J. Therien, L. Eng, and D. Bonnell, "The Effect of Molecular Orientation on the Potential of Porphyrin–Metal Contacts", Nano Lett, 2008(8), 110-113.
  2. H. Zou, M. J. Therien, and J. K. Blasie, "Structure and Dynamics of an Extended Conjugated NLO Chromophore within an Amphiphilic 4-Helix Bundle Peptide by Molecular Dynamics Simulation", J. Phys. Chem. B., 2008(12), 1350-1357.
  3. T. V. Duncan, K. Song, S.-T. Hung, I. Miloradovic, A. Persoons, T. Verbiest, M. J. Therien, and K. Clays, "Molecular Symmetry and Solution Phase Structure Interrogated by Hyper-Raleigh Depolarization Measurements: Insights for Elaborating Highly Hyperpolarizable D2 – Symmetric Chromophores", Angew. Chemie, Int. Ed. Engl., 2008(47), 2978-2981.
  4. Y. K. Kang, P. Deria, P. J. Carroll, and M. J. Therien, "Synthesis of Water-Soluble Poly-(p-phenyleneethynylene) in Neat Water Under Aerobic Conditions via Suzuki-Miyaura Polycondensatin using a Diborylethyne Synthon", Org. Lett., 2008(10), 1341-1344.
  5. T. V. Duncan, P. P. Ghoroghchian, I. V. Rubstov, D. A. Hammer, and M. J. Therien, "Ultrafast Excited State Dynamics of Nanoscale Near Infrared Emissive Polymersomes", J. Am. Chem. Soc., 2008(130), 9773-9784.
  6. K. A. McAllister, H. Zou, F. V. Cochran, G. M. Bender, A. Senes, H. C. Fry, V. Nanda, P. A. Keenan, J. D. Lear, M. J. Therien, J. K. Blasie, and W. F. DeGrado, "Using a-Helical Coiled-Coils to Design Nanostructured Porphyrin Arrays", J. Am. Chem. Soc., 2008(130), 11921-11927.
  7. D. A. Hammer, G. R. Robbins, J. J. Lin, L. A. Smith, P. P. Ghoroghchian, M. J. Therien, and F. S. Bates, "Leuko-Polymersomes", Faraday Discuss, 2008(139), 129-141.
  8. D. H. Levine, P. P. Ghoroghchian, J. Freudenberg, G. Zhang, M. J. Therien, M. I. Greene, D. A. Hammer, and R. Murali, "Polymersomes: A New Multi-Functional Tool for Cancer Diagnosis and Therapy", Methods, 2008(46), 25-32.
  9. S. Keinan, M. J. Therien, D. N. Beratan, and W. Yang, "Molecular Design of Porphyrin-Based Nonlinear Optical Materials", J. Phys. Chem. A., 2008(112), 12203-12207.
  10. Y. K. Kang, O.-S. Lee, P. Deria, S. H. Kim, T.-H. Park, D. A. Bonnell, J. G. Saven, and M. J. Therien, "Helical Wrapping of Single-Walled Carbon Nanotubes by Water Soluble, Rigid Rod-like Poly(p-phenyleneethynylene)", Nano Lett, 2008.
  11. N. A. Christian, F. Benencia, M. C. Milone, G. Li, P. R. Frail, M. J. Therien, G. Coukos, and D. A. Hammer, "In Vivo Dendritic Cell Tracking Using Fluorescence Lifetime Imaging and Near-Infrared Emissive Polymersomes", Molecular Imaging & Biology, 2008.
  12. Y. Xing, T.-H. Park, R. Venkatramani, S. Keinan, D. N. Beratan, M. J. Therien, and E. Borguet, "Optimizing Single Molecule Conductivity of Conjugated Organic Oligomers with Conjugated Carbodithioate Linkers", J. Am. Chem. Soc, 2008.
  13. Y. K. Kang, J. Zheng, I. V. Rubtsov, D. N. Beratan, and M. J. Therien, "Orientational Dependence of Cofacial Porphyrin-Quinone Electronic Interactions within the Strong Coupling Regime", J. Am. Chem. Soc., 2008.
  14. M. Jimbo, G. P. Robbins, J. Swift, M. J. Therien, D. A. Hammer, and I. J. Dmochowski, "Photo-initiated Destruction of Composite Porphyrin-Protein Polymersomes", J. Am. Chem. Soc., 2008.
  15. J. A. N. Fisher, K. Susumu, M. J. Therien, and A. G. Yodh, "Influence of Linear and Nonlinear Absorption in the Two-Photon Soret Transition Region of Highly Conjugated Multi-Porphyrin Systems", J. Chem. Phys, 2008.

Toone, Eric J.

  1. Chakrapaani, H.; Bartberger, M. D.; Toone, E. J., "C-Nitroso Donors of Nitric Oxide", J. Org. Chem., 2008.
  2. E.J. Toone, "Advances in Enzymology and Related Areas of Molecular Biology", edited by E.J. Toone , 2008, Wiley-Interscience.
  3. Walters, M. J.; Srikannathasan, V.; McEwan, A. R.; Naismith, J. H.; Fierke, C. A.; Toone, E. J., "Characterization and crystal structure of Escherichia KDPGal aldolase", Bioorg. Med. Chem., 2008(16 (2)), 710-720.
  4. Lai, T.-S.; Liu, Y.; Tucker, T.; Daniel, K. R.; Sane, D. C.; Toone, E. J.; Burke, J. R.; Strittmatter, W. J.; Greenberg, C. S., "Identification of Chemical Inhibitors to Human Tissue Transglutamase by Screening Existing Drug Libraries", Chemistry & Biology, 2008(15), 969-978.

Vo-Dinh, Tuan

  1. T. Vo-dinh and J. Scaffidi and M. Gregas and Y. Zhang and V. Seewaldt, "Applications of fiber-optics-based nanosensors to drug discovery", Expert Opinion On Drug DiscoveryAugust,, 2009, 4(8), 889 -- 900 [abs].
  2. A. Dhawan and S. J. Norton and M. D. Gerhold and T. Vo-dinh, "Comparison of FDTD numerical computations and analytical multipole expansion method for plasmonics-active nanosphere dimers", Optics ExpressJune,, 2009, 17(12), 9688 -- 9703 [abs].
  3. K. Skorupska and H. J. Lewerenz and T. Vo-dinh, "Scanning probe characterization of enzymes deposited onto step-bunched silicon nanostructures", Physica ScriptaJune,, 2009, 79(6) [abs].
  4. H. N. Wang and T. Vo-dinh, "Multiplex detection of breast cancer biomarkers using plasmonic molecular sentinel nanoprobes", NanotechnologyFebruary,, 2009, 20(6) [abs].
  5. J. P. Scaffidi and M. K. Gregas and V. Seewaldt and T. Vo-dinh, "SERS-based plasmonic nanobiosensing in single living cells", Analytical And Bioanalytical ChemistryFebruary,, 2009, 393(4), 1135 -- 1141 [abs].
  6. C. G. Khoury and T. Vo-dinh, "Gold Nanostars For Surface-Enhanced Raman Scattering: Synthesis, Characterization and Optimization", Journal Of Physical Chemistry CDecember,, 2008, 112(48), 18849 -- 18859 [abs].
  7. S. J. Norton and T. Vo-dinh, "Optical response of linear chains of metal nanospheres and nanospheroids", Journal Of The Optical Society Of America A-optics Image Science And VisionNovember,, 2008, 25(11), 2767 -- 2775 [abs].
  8. A. Dhawan and J. F. Muth and D. N. Leonard and M. D. Gerhold and J. Gleeson and T. Vo-dinh and P. E. Russell, "Focused in beam fabrication of metallic nanostructures on end faces of optical fibers for chemical sensing applications", Journal Of Vacuum Science \& Technology BNovember,, 2008, 26(6), 2168 -- 2173 [abs].
  9. Q. Liu and S. Norton and T. Vo-dinh, "Modeling of nonphase mechanisms in ultrasonic modulation of light propagation", Applied OpticsJuly,, 2008, 47(20), 3619 -- 3630 [abs].
  10. G. Gauglitz and F. W. Scheller and T. Vo-dinh, "Focus on bioanalysis", Analytical And Bioanalytical ChemistryJuly,, 2008, 391(5), 1483 -- 1484.
  11. D. N. Stratis-cullum and G. D. Griffin and J. Mobley and T. Vo-dinh, "Intensified biochip system using chemiluminescence for the detection of Bacillus globigii spores", Analytical And Bioanalytical ChemistryJuly,, 2008, 391(5), 1655 -- 1660 [abs].
  12. S. Karabicak and M. Kaya and T. Vo-dinh and M. Volkan, "Silver nanoparticle-doped polyvinyl alcohol coating as a medium for surface-enhanced Raman scattering analysis", Journal Of Nanoscience And NanotechnologyFebruary,, 2008, 8(2), 955 -- 960 [abs].
  13. T. Vo-dinh, "Nanosensing at the single cell level", Spectrochimica Acta Part B-atomic SpectroscopyFebruary,, 2008, 63(2), 95 -- 103 [abs].
  14. F. Yan and Y. Zhang and H. K. Yuan and M. K. Gregas and T. Vo-dinh, "Apoferritin protein cages: a novel drug nanocarrier for photodynamic therapy", Chemical Communications, 2008(38), 4579 -- 4581 [abs].
  15. S. J. Norton and T. Vo-dinh, "Spectral bounds on plasmon resonances for Ag and Au prolate and oblate nanospheroids", Journal Of Nanophotonics, 2008, 2 [abs].
  16. T. Vo-Dinh, "Fiberoptics Nanosensing at the Single Cell Level", Spectrochimia Acta B, 2008, 63, 95-103.
  17. M. Panjehpour, D. Coppola, B.F. Overholt, T. Vo-Dinh, S. Overholt, "Photodynamic Therapy of Barrett’s Esophagus: Ablation of Barrett’s Mucosa and Reduction in P53 Protein Expression After Treatment", Anticancer Research (in press), 2008.
  18. D. Stratis-Cullum, G.D. Griffin, T. Vo-Dinh, "Intensified Biochip System Using Chemiluminescence for the Detection of Bacillus globigii Spores", Analytical and Bioanalytical Chemistry, 2008.
  19. T. Vo-Dinh, "Nanobiosensing Using Plasmonics Nanoprobes", IEEE J. Selected Topics in Quantum Electronics, 2008, 14, 1989-205.
  20. M. Panjehpour and D. Coppola and B. F. Overholt and T. Vo-dinh and S. Overholt, "Photodynamic therapy of Barrett's esophagus: Ablation of Barrett's mucosa and reduction in p53 protein expression after treatment", Anticancer Research, 2008, 28(1B), 485 -- 489 [abs].
  21. T. Vo-dinh, "Nanobiosensing using plasmonic nanoprobes", Ieee Journal Of Selected Topics In Quantum Electronics, 2008, 14(1), 198 -- 205 [abs].
  22. Stokes, D.L. and Vo-Dinh, T., "Development of an integrated single-fiber SERS sensor", Sens. Actuators B, Chem. (Switzerland), 10, B69(1-2), 28 - 36 [S0925-4005(00)00291-4] [abs].
  23. Gammage, R.B. and Vo-Dinh, T., "Luminescence monitoring of oil or tar contamination for industrial hygiene", Nucl. Instrum. Methods (Netherlands), 1, 175(1), 236 - 8 [0029-554X(80)90317-1] [abs].
  24. Das, C. and Trivedi, A. and Mitra, K. and Vo-Dinh, T., "Experimental and numerical analysis of short-pulse laser interaction with tissue phantoms containing inhomogeneities", Appl. Opt. (USA), 1, 42(25), 5173 - 80 [abs].
  25. Sagan, C. and Khare, B.N. and Thompson, W.R. and McDonald, G.D. and Wing, M.R. and Bada, J.L. and Vo-Dinh, T. and Arakawa, E.T., "Polycyclic aromatic hydrocarbons in the atmospheres of Titan and Jupiter", Astrophys. J. (USA), 1, 414(1), 399 - 405 [173086] [abs].
  26. Vo-Dinh, T. and Stokes, D.L. and Griffin, G.D. and Volkan, M. and Kim, U.J. and Simon, M.I., "Surface-enhanced Raman scattering (SERS) method and instrumentation for genomics and biomedical analysis", J. Raman Spectrosc. (UK), 30(9), 785 - 93 [(SICI)1097-4555(199909)30:9<785::AID-JRS450>3.0.CO;2-6] [abs].
  27. Alarie, J.P. and Vo-Dinh, T. and Miller, G. and Ericson, M.N. and Maddox, S.R. and Watts, W. and Eastwood, D. and Lidberg, R. and Dominguez, M., "Development of a battery-operated portable synchronous luminescence spectrofluorometer", Rev. Sci. Instrum. (USA), 64(9), 2541 - 6 [1.1143916] [abs].

Widenhoefer, Ross A.

  1. Han, X.; Widenhoefer, R. A., "Palladium-Mediated Cyclization of 6-Methyl-1-phenyl-6-hepten-2-one to form 3-Benzyltoluene: Carbonyl Activation by a Neutral Palladium(II) Complex", Organometallics, 2008(26), 4061-4065.
  2. Kinder, R. E.; Zhang, Z.; Widenhoefer, R. A., "Intermolecular Hydroamination of Allenes with N-Unsubstituted Carbamates Catalyzed by a Gold(I) N-Heterocyclic Carbene Complex", Org. Lett., 2008(10), 3157-3159.
  3. Widenhoefer, R. A., "Recent Developments in Enantioselective Gold(I) Catalysis", Chem. Eur. J., 2008(14), 5382-5391 (Invited Concept Article.).
  4. Bender, C. F.; Widenhoefer, R. A., "Gold(I)-Catalyzed Intramolecular Hydroamination of Unactivated C=C Bonds with Alkyl Ammonium Salts", Chem. Commun., 2008, 2741-2743.
  5. Bender, C. F.; Hudson, W. B.; Widenhoefer, R. A., "Sterically Hindered Mono(phosphines) as Supporting Ligands for the Platinum-Catalyzed Hydroamination of Amino Alkenes", Organometallics, 2008(27), 2356-2358.
  6. Zhang, Z.; Widenhoefer, R. A., "Regio- and Stereoselective Synthesis of Alkyl Allylic Ethers via Gold(I)-Catalyzed Intermolecular Hydroalkoxylation of Allenes with Alcohols", Org. Lett., 2008(10), 2079-2081.

Wiley, Benjamin J.

  1. Lu, X.; Rycenga, M.; Skrabalak, S. E.; Wiley, B. J. and Xia, Y., "Chemical Synthesis of Novel Plasmonic Nanoparticles", Annu. Rev. Phys. Chem, 2009(60), 167-192.
  2. Martinez, A. W.; Phillips, S. T.; Wiley, B. J.; Gupta, M. and Whitesides, G. J., "FLASH: A rapid method for prototyping paper-based microfluidic devices", Lab Chip, 2008(8), 2146-2150.
  3. Wiley, B. J.; Lipomi, D. J.; Bao, J.; Capasso, F. and Whitesides, G. M., "Fabrication of Surface Plasmon Resonators by Nanoskiving Single-Crystalline Gold Microplates", Nano Lett., 2008(8), 3023-3028.
  4. Pyayt, A. L.; Wiley, B. J.; Xia, Y.; Chen, A. and Dalton, L., "Integration of Silver Nanowire Plasmonic and Photonic Waveguides", Nature Photonics, 2008(3), 660-665.
  5. Rang, M.; Jones, A. C.; Zhou, F.; Li, Z.-Y.; Wiley, B. J.; Xia, Y. and Raschke, M. B., "Optical Near-Field Mapping of Plasmonic Nanoprisms", Nano. Lett, 2008(8), 3357-3363.
  6. Skrabalak, S. E.*; Wiley, B. J.*; Kim, M. H.; Formo, E. and Xia, Y., "On the Polyol Synthesis of Silver Nanostructures: Glycolaldehyde as a Reducing Agent", Nano Lett., 2008(8), 2077-2081 (*co-first author.).
  7. Kim, M. H.; Lu, X.; Wiley, B. J.; Lee, E. P. and Xia, Y., "The Morphological Evolution of Single-Crystal Ag Nanospheres During the Galvanic Replacement Reaction with HAuCl4.", J. Phys. Chem. C, 2008(112), 7872-7876.

Yang, Weitao

  1. T. Heaton-Burgess and W. T. Yang, "Optimized effective potentials from arbitrary basis sets", Journal of Chemical Physics, November, 2008, 129, 194102.
  2. H. Hu, A. Boone, and W. T. Yang, "Mechanism of omp decarboxylation in orotidine 5 ’-monophosphate decarboxylase", Journal of the American Chemical Society, November, 2008, 130, 14493-14503.
  3. D. Balamurugan, W. T. Yang, and D. N. Beratan, "Exploring chemical space with discrete, gradient, and hybrid optimization methods", Journal of Chemical Physics, November, 2008, 129, 174105.
  4. E. R. Johnson, P. Mori-Sanchez, A. J. Cohen, and W. T. Yang, "Delocalization errors in density functionals and implications for main-group thermochemistry", Journal of Chemical Physics, November, 2008, 129, 204112.
  5. S. Keinan, M. J. Therien, D. N. Beratan, and W. T. Yang, "Molecular design of porphyrin-based nonlinear optical materials", Journal of Physical Chemistry A, November, 2008, 112, 12203-12207.
  6. S. H. Ke, W. T. Yang, and H. U. Baranger, "Quantum-interference-controlled molecular electronics", Nano Letters, October, 2008, 8, 3257-3261.
  7. J. M. Parks, H. Hu, A. J. Cohen, and W. T. Yang, "A pseudobond parametrization for improved electrostatics in quantum mechanical/molecular mechanical simulations of enzymes", Journal of Chemical Physics, October, 2008, 129, 154106.
  8. A. J. Cohen, P. Mori-Sanchez, and W. T. Yang, "Fractional spins and static correlation error in density functional theory", Journal of Chemical Physics, September, 2008, 129, 121104.
  9. S. Keinan, W. D. Paquette, J. J. Skoko, D. N. Beratan, W. T. Yang, S. Shinde, P. A. Johnston, J. S. Lazo, and P. Wipf, "Computational design, synthesis and biological evaluation of para-quinone-based inhibitors for redox regulation of the dual-specificity phosphatase cdc25b", Organic & Biomolecular Chemistry, September, 2008, 6, 3256-3263.
  10. D. Q. Xiao, F. A. Bulat, W. T. Yang, and D. N. Beratan, "A donor-nanotube paradigm for nonlinear optical materials", Nano Letters, September, 2008, 8, 2814-2818.
  11. A. J. Cohen, P. Mori-Sanchez, and W. T. Yang, "Insights into current limitations of density functional theory", Science, August, 2008, 321, 792-794.
  12. K. Fujimoto and W. T. Yang, "Density-fragment interaction approach for quantum-mechanical/molecularmechanical calculations with application to the excited states of a mg2+-sensitive dye", Journal of Chemical Physics, August, 2008, 129, 054102.
  13. X. Q. Hu, D. N. Beratan, and W. T. Yang, "A gradient-directed monte carlo approach to molecular design", Journal of Chemical Physics, August, 2008, 129, 064102.
  14. Z. Li, C. Y. Wang, X. Zhang, S. H. Ke, and W. T. Yang, "Transport properties of an armchair carbon nanotube with a double vacancy under stretching", Journal of Physics-Condensed Matter, August, 2008, 20, 345225.
  15. S. K. Burger and W. T. Yang, "Linear-scaling quantum calculations using non-orthogonal localized molecular orbitals", Journal of Physics-Condensed Matter, July, 2008, 20, 294209.
  16. D. Q. Xiao, W. T. Yang, and D. N. Beratan, "Inverse molecular design in a tight-binding framework", Journal of Chemical Physics, July, 2008, 129, 044106.
  17. P. Mori-Sanchez, A. J. Cohen, and W. T. Yang, "Localization and delocalization errors in density functional theory and implications for band-gap prediction", Physical Review Letters, April, 2008, 100, 146401.
  18. T. Heaton-Burgess, A. J. Cohen, W. T. Yang, and E. R. Davidson, "Size extensivity of the direct optimized effective potential method", Journal of Chemical Physics, March, 2008, 128, 114702.
  19. A. J. Cohen, P. Mori-Sanchez, and W. T. Yang, "Fractional charge perspective on the band gap in density-functional theory", Physical Review B, March, 2008, 77, 115123.
  20. J. M. Parks, R. K. Kondru, H. Hu, D. N. Beratan, and W. T. Yang, "Hepatitis c virus ns5b polymerase: Qm/mm calculations show the important role of the internal energy in ligand binding", Journal of Physical Chemistry B, March, 2008, 112, 3168-3176.
  21. X. C. Zeng, H. Hu, X. Q. Hu, A. J. Cohen, and W. T. Yang, "Ab initio quantum mechanical/molecular mechanical simulation of electron transfer process: Fractional electron approach", Journal of Chemical Physics, March, 2008, 128, 124510.
  22. H. Hu, Z. Y. Lu, J. M. Parks, S. K. Burger, and W. T. Yang, "Quantum mechanics/molecular mechanics minimum free-energy path for accurate reaction energetics in solution and enzymes: Sequential sampling and optimization on the potential of mean force surface", Journal of Chemical Physics, January, 2008, 128, 034105.
  23. H. Hu and W. T. Yang, "Free energies of chemical reactions in solution and in enzymes with ab initio quantum mechanics/molecular mechanics methods", Annual Review of Physical Chemistry, 2008, 59, 573-601.
  24. H. Lee, K. W. Kim, J. Park, H. Kim, S. Kim, D. Kim, X. Q. Hu, W. T. Yang, and J. Y. Hong, "A general strategy for construction of both 2,6-cis-and 2,6-trans-disubstituted tetrahydropyrans: Substrate-controlled asymmetric total synthesis of (+)-scanlonenyne", Angewandte Chemie-International Edition, 2008, 47(22), 4200-4203.