Publications of Paul S. Manos

Papers Published

  1. Crowl, AA; Fritsch, PW; Tiley, GP; Lynch, NP; Ranney, TG; Ashrafi, H; Manos, PS, A first complete phylogenomic hypothesis for diploid blueberries (Vaccinium section Cyanococcus)., Am J Bot, vol. 109 no. 10 (October, 2022), pp. 1596-1606
  2. Zhou, B-F; Yuan, S; Crowl, AA; Liang, Y-Y; Shi, Y; Chen, X-Y; An, Q-Q; Kang, M; Manos, PS; Wang, B, Phylogenomic analyses highlight innovation and introgression in the continental radiations of Fagaceae across the Northern Hemisphere., Nature Communications, vol. 13 no. 1 (March, 2022), pp. 1320
  3. Manos, PS; Hipp, AL, An updated infrageneric classification of the north american oaks (Quercus subgenus quercus): Review of the contribution of phylogenomic data to biogeography and species diversity, Forests, vol. 12 no. 6 (June, 2021)
  4. Crowl, AA; Manos, PS; McVay, JD; Lemmon, AR; Lemmon, EM; Hipp, AL, Uncovering the genomic signature of ancient introgression between white oak lineages (Quercus)., The New Phytologist, vol. 226 no. 4 (May, 2020), pp. 1158-1170
  5. Hipp, AL; Manos, PS; Hahn, M; Avishai, M; Bodénès, C; Cavender-Bares, J; Crowl, AA; Deng, M; Denk, T; Fitz-Gibbon, S; Gailing, O; González-Elizondo, MS; González-Rodríguez, A; Grimm, GW; Jiang, X-L; Kremer, A; Lesur, I; McVay, JD; Plomion, C; Rodríguez-Correa, H; Schulze, E-D; Simeone, MC; Sork, VL; Valencia-Avalos, S, Genomic landscape of the global oak phylogeny., The New Phytologist, vol. 226 no. 4 (May, 2020), pp. 1198-1212
  6. Hipp, AL; Manos, PS; Cavender-Bares, J, ASCENT OF THE OAKS, Scientific American, vol. 323 no. 2 (2020), pp. 42-49
  7. Denk, T; Hill, RS; Simeone, MC; Cannon, C; Dettmann, ME; Manos, PS, Comment on "Eocene Fagaceae from Patagonia and Gondwanan legacy in Asian rainforests"., Science (New York, N.Y.), vol. 366 no. 6467 (November, 2019), pp. eaaz2189
  8. One Thousand Plant Transcriptomes Initiative,, One thousand plant transcriptomes and the phylogenomics of green plants., Nature, vol. 574 no. 7780 (October, 2019), pp. 679-685
  9. Hipp, AL; Whittemore, AT; Garner, M; Hahn, M; Fitzek, E; Guichoux, E; Cavender-Bares, J; Gugger, PF; Manos, PS; Pearse, IS; Cannon, CH, Genomic Identity of White Oak Species in an Eastern North American Syngameon, Annals of the Missouri Botanical Garden, vol. 104 no. 3 (October, 2019), pp. 455-477
  10. Cavender-Bares, J; Kothari, S; Meireles, JE; Kaproth, MA; Manos, PS; Hipp, AL, The role of diversification in community assembly of the oaks (Quercus L.) across the continental U.S., American Journal of Botany, vol. 105 no. 3 (March, 2018), pp. 565-586
  11. Meireles, JE; Manos, PS, Pervasive migration across rainforest and sandy coastal plain Aechmea nudicaulis (Bromeliaceae) populations despite contrasting environmental conditions., Molecular Ecology, vol. 27 no. 5 (March, 2018), pp. 1261-1272
  12. Harnik, PG; Maherali, H; Miller, JH; Manos, PS, Geographic range velocity and its association with phylogeny and life history traits in North American woody plants., Ecology and Evolution, vol. 8 no. 5 (March, 2018), pp. 2632-2644
  13. Deng, M; Jiang, X-L; Hipp, AL; Manos, PS; Hahn, M, Phylogeny and biogeography of East Asian evergreen oaks (Quercus section Cyclobalanopsis; Fagaceae): Insights into the Cenozoic history of evergreen broad-leaved forests in subtropical Asia., Molecular Phylogenetics and Evolution, vol. 119 (February, 2018), pp. 170-181
  14. Hipp, AL; Manos, PS; González-Rodríguez, A; Hahn, M; Kaproth, M; McVay, JD; Avalos, SV; Cavender-Bares, J, Sympatric parallel diversification of major oak clades in the Americas and the origins of Mexican species diversity., The New Phytologist, vol. 217 no. 1 (January, 2018), pp. 439-452
  15. Hauser, DA; Keuter, A; McVay, JD; Hipp, AL; Manos, PS, The evolution and diversification of the red oaks of the California Floristic Province (Quercus section Lobatae, series Agrifoliae)., American Journal of Botany, vol. 104 no. 10 (October, 2017), pp. 1581-1595
  16. Fitz-Gibbon, S; Hipp, AL; Pham, KK; Manos, PS; Sork, VL, Phylogenomic inferences from reference-mapped and de novo assembled short-read sequence data using RADseq sequencing of California white oaks (Quercus section Quercus)., Genome, vol. 60 no. 9 (September, 2017), pp. 743-755
  17. Pham, KK; Hipp, AL; Manos, PS; Cronn, RC, A time and a place for everything: phylogenetic history and geography as joint predictors of oak plastome phylogeny., Genome, vol. 60 no. 9 (September, 2017), pp. 720-732
  18. McVay, JD; Hauser, D; Hipp, AL; Manos, PS, Phylogenomics reveals a complex evolutionary history of lobed-leaf white oaks in western North America., Genome, vol. 60 no. 9 (September, 2017), pp. 733-742
  19. McVay, JD; Hipp, AL; Manos, PS, A genetic legacy of introgression confounds phylogeny and biogeography in oaks., Proceedings of the Royal Society B: Biological Sciences, vol. 284 no. 1854 (May, 2017), pp. 20170300
  20. Yu, Y; Xiang, Q; Manos, PS; Soltis, DE; Soltis, PS; Song, B-H; Cheng, S; Liu, X; Wong, G, Whole-genome duplication and molecular evolution in Cornus L. (Cornaceae) - Insights from transcriptome sequences., Plos One, vol. 12 no. 2 (January, 2017), pp. e0171361
  21. Denk, T; Grimm, GW; Manos, PS; Deng, M; Hipp, AL, An Updated Infrageneric Classification of the Oaks: Review of Previous Taxonomic Schemes and Synthesis of Evolutionary Patterns, in Tree Physiology (2017), pp. 13-38, Springer International Publishing, ISBN 9783319690988
  22. Johnson, MG; Lang, K; Manos, P; Golet, GH; Schierenbeck, KA, Evidence for genetic erosion of a California native tree, Platanus racemosa, via recent, ongoing introgressive hybridization with an introduced ornamental species, Conservation Genetics, vol. 17 no. 3 (June, 2016), pp. 593-602, Springer Nature
  23. Cavender-Bares, J; González-Rodríguez, A; Eaton, DAR; Hipp, AAL; Beulke, A; Manos, PS, Phylogeny and biogeography of the American live oaks (Quercus subsection Virentes): a genomic and population genetics approach., Molecular Ecology, vol. 24 no. 14 (July, 2015), pp. 3668-3687
  24. Manos, PS; Meireles, JE, Biogeographic analysis of the woody plants of the Southern Appalachians: Implications for the origins of a regional flora., Am J Bot, vol. 102 no. 5 (May, 2015), pp. 780-804, ISSN 0002-9122
  25. Cavender-Bares, J., D. Eaton, A. Gonzalez-Rodriguez, A. Hipp, A. Beulke and P.S. Manos, Phylogeny and biogeography of the American live oaks (Quercus subsection Virentes): A genomic and population genetic approach, Molecular Ecology (2015)
  26. Hipp, AL; Eaton, DAR; Cavender-Bares, J; Fitzek, E; Nipper, R; Manos, PS, A framework phylogeny of the American oak clade based on sequenced RAD data., Plos One, vol. 9 no. 4 (January, 2014), pp. e93975
  27. Burge, DO; Hopkins, R; Tsai, Y-HE; Manos, PS, Limited hybridization across an edaphic disjunction between the gabbro-endemic shrub Ceanothus roderickii (Rhamnaceae) and the soil-generalist Ceanothus cuneatus., Am J Bot, vol. 100 no. 9 (September, 2013), pp. 1883-1895
  28. Kremer, A; Abbott, AG; Carlson, JE; Manos, PS; Plomion, C; Sisco, P; Staton, ME; Ueno, S; Vendramin, GG, Genomics of Fagaceae, Tree Genetics & Genomes, vol. 8 no. 3 (June, 2012), pp. 583-610, Springer Nature, ISSN 1614-2942
  29. Burge, DO; Erwin, DM; Islam, MB; Kellermann, J; Kembel, SW; Wilken, DH; Manos, PS, Diversification of Ceanothus (Rhamnaceae) in the California Floristic province, International Journal of Plant Sciences, vol. 172 no. 9 (November, 2011), pp. 1137-1164, University of Chicago Press, ISSN 1058-5893
  30. Burge, DO; Manos, PS, Edaphic ecology and genetics of the gabbro-endemic shrub Ceanothus roderickii (Rhamnaceae)., Madroño, vol. 58 (2011), pp. 1-21
  31. Tsai, Y-HE; Manos, PS, Host density drives the postglacial migration of the tree parasite, Epifagus virginiana., Proceedings of the National Academy of Sciences of the United States of America, vol. 107 no. 39 (September, 2010), pp. 17035-17040
  32. Stone, DE; Oh, S-H; Tripp, EA; G, LER; Manos, PS, Natural history, distribution, phylogenetic relationships, and conservation of Central American black walnuts (Juglans sect. Rhysocaryon), Journal Torrey Botanical Society, vol. 136 no. 1 (February, 2009), pp. 1-25, Torrey Botanical Society, ISSN 1095-5674
  33. Gugger, PF; McLachlan, JS; Manos, PS; Clark, JS, Inferring long-distance dispersal and topographic barriers during post-glacial colonization from the genetic structure of red maple (Acer rubrum L.) in New England, Journal of Biogeography, vol. 35 no. 9 (September, 2008), pp. 1665-1673, WILEY, ISSN 0305-0270
  34. Tripp, EA; Manos, PS, Is floral specialization an evolutionary dead-end? Pollination system transitions in Ruellia (Acanthaceae)., Evolution, vol. 62 no. 7 (July, 2008), pp. 1712-1737, ISSN 0014-3820
  35. Willson, CJ; Manos, PS; Jackson, RB, Hydraulic traits are influenced by phylogenetic history in the drought-resistant, invasive genus Juniperus (Cupressaceae)., American Journal of Botany, vol. 95 no. 3 (March, 2008), pp. 299-314, ISSN 0002-9122
  36. Manos, PS; Cannon, CH; Oh, SH, Phylogenetic relationships and taxonomic status of the paleoendemic Fagaceae of western North America: recognition of a new genus Notholithocarpus., Madroño, vol. 55 (2008), pp. 181-190
  37. Oh, SH; Manos, PS, Molecular phylogenetics and cupule evolution in Fagaceae as inferred from nuclear CRABS CLAW sequences, Taxon, vol. 57 no. 2 (2008), pp. 434-451, ISSN 0040-0262
  38. Douglas, NA; Manos, PS, Molecular phylogeny of Nyctaginaceae: taxonomy, biogeography, and characters associated with a radiation of xerophytic genera in North America., Am J Bot, vol. 94 no. 5 (May, 2007), pp. 856-872, ISSN 0002-9122
  39. Manos Soltis, PS; Soltis, DE; Manchester, SR; Oh, SH; Bell, CD; Dilcher, DL; Stone, DE, Phylogeny of extant and extinct Juglandaceae inferred from the integration of molecular and morphological data sets, Systematic Biology, vol. 56 no. 3 (2007), pp. 412-430, ISSN 1063-5157
  40. Douglas, NA; Manos, PS, Nyctaginaceae phylogeny, classification, and characters associated with a radiation of xerophytic genera in North America, American Journal of Botany, vol. 94 no. 5 (2007), pp. 856-872, ISSN 0002-9122
  41. Soltis, DE; Morris, AB; McLachlan, JS; Manos, PS; Soltis, PS, Comparative phylogeography of unglaciated eastern North America., Molecular Ecology, vol. 15 no. 14 (December, 2006), pp. 4261-4293, ISSN 0962-1083
  42. Whitson, M; Manos, PS, Untangling Physalis (Solanaceae) from the physaloids: A two-gene phylogeny of the physalinae, Systematic Botany, vol. 30 no. 1 (January, 2005), pp. 216-230, American Society of Plant Taxonomists
  43. McLachlan, JS; Clark, JS; Manos, PS, Molecular indicators of tree migration capacity under rapid climate change, Ecology, vol. 86 no. 8 (January, 2005), pp. 2088-2098, WILEY
  44. Devos, N; Oh, SH; Raspé, O; Jacquemart, AL; Manos, PS, Nuclear ribosomal DNA sequence variation and evolution of spotted marsh-orchids (Dactylorhiza maculata group), Molecular Phylogenetics and Evolution, vol. 36 no. 3 (2005), pp. 568-580, ISSN 1055-7903
  45. Feng, Y; Oh, SH; Manos, PS, Phylogeny and historical biogeography of the genus Platanus as inferred from nuclear and chloroplast DNA, Systematic Botany, vol. 30 no. 4 (2005), pp. 786-799, American Society of Plant Taxonomists, ISSN 0363-6445
  46. Miller, RE; McDonald, JA; Manos, PS, Systematics of Ipomoea subgenus Quamoclit (Convolvulaceae) based on ITS sequence data and a Bayesian phylogenetic analysis., Am J Bot, vol. 91 no. 8 (August, 2004), pp. 1208-1218, ISSN 0002-9122
  47. Jaramillo, MA; Manos, PS; Zimmer, EA, Phylogenetic relationships of the perianthless Piperales: Reconstructing the evolution of floral development, International Journal of Plant Sciences, vol. 165 no. 3 (January, 2004), pp. 403-416, University of Chicago Press
  48. Li, RQ; Chen, ZD; Lu, AM; Soltis, DE; Soltis, PS; Manos, PS, Phylogenetic relationships in Fagales based on DNA sequences from three genomes, International Journal of Plant Sciences, vol. 165 no. 2 (January, 2004), pp. 311-324, University of Chicago Press
  49. Williams, KJ; Kress, WJ; Manos, PS, The phylogeny, evolution, and classification of the genus Globba and tribe Globbeae (Zingiberaceae): appendages do matter., American Journal of Botany, vol. 91 no. 1 (January, 2004), pp. 100-114, ISSN 0002-9122
  50. Williams, KJ; Kress, WJ; Manos, PS, Appendages do matter: the phylogeny, evolution, and classification of the genus Globba and tribe Globbeae (Zingiberaceae), American Journal of Botany, vol. 91 no. 1 (2004), pp. 100-114, ISSN 0002-9122
  51. McDowell, T; Volovsek, M; Manos, P, Biogeography of Exostema (Rubiaceae) in the Caribbean region in light of molecular phylogenetic analyses, Systematic Botany, vol. 28 no. 2 (April, 2003), pp. 431-441
  52. Cannon, CH; Manos, PS, Phylogeography of the Southeast Asian stone oaks (Lithocarpus), Journal of Biogeography, vol. 30 no. 2 (February, 2003), pp. 211-226, WILEY
  53. Miller, RE; Buckley, TR; Manos, PS, An examination of the monophyly of morning glory taxa using Bayesian phylogenetic inference., Systematic Biology, vol. 51 no. 5 (October, 2002), pp. 740-753, ISSN 1063-5157
  54. Miller, RE; Buckley, TR; Manos, PS, Application of Baysian phylogenetic inference to the systematics of morning glories, Systematic Biology, vol. 51 no. 5 (2002), pp. 740-753, ISSN 1063-5157
  55. Manos, PS; Miller, RE; Wilkin, P, Phylogenetic analysis of Ipomoea, Argyreia, Stictocardia, and Turbina suggests a generalized model of morphological evolution in morning glories, Systematic Botany, vol. 26 no. 3 (October, 2001), pp. 585-602, ISSN 0363-6445
  56. Jaramillo, MA; Manos, PS, Phylogeny and patterns of floral diversity in the genus Piper (Piperaceae)., Am J Bot, vol. 88 no. 4 (April, 2001), pp. 706-716, ISSN 0002-9122
  57. Manos, PS; Donoghue, MJ, Progress in Northern Hemisphere phytogeography: An introduction, International Journal of Plant Sciences, vol. 162 no. 6 SUPPL. (January, 2001), pp. S1-S2, University of Chicago Press
  58. Manos, PS; Zhou, ZK; Cannon, CH, Systematics of Fagaceae: Phylogenetic tests of reproductive trait evolution, International Journal of Plant Sciences, vol. 162 no. 6 (January, 2001), pp. 1361-1379, University of Chicago Press
  59. Krellwltz, EC; Kowallik, KV; Manos, PS, Molecular and morphological analyses of Bryopsis (Bryopsidales, Chlorophyta) from the western North Atlantic and Caribbean, Phycologia, vol. 40 no. 4 (January, 2001), pp. 330-339, International Phycological Society
  60. Manos, PS; Stone, DE, Evolution, phylogeny, and systematics of the Juglandaceae, Annals of the Missouri Botanical Garden, vol. 88 no. 2 (January, 2001), pp. 231-269, JSTOR
  61. Manos, PS; Stanford, AM, The historical biogeography of Fagaceae: Tracking the tertiary history of temperate and subtropical forests of the Northern Hemisphere, International Journal of Plant Sciences, vol. 162 no. 6 SUPPL. (January, 2001), pp. S77-S93, University of Chicago Press
  62. Cannon, CH; Manos, PS, Combining and comparing morphometric shape descriptors with a molecular phylogeny: the case of fruit type evolution in Bornean Lithocarpus (Fagaceae), Systematic Biology, vol. 50 no. 6 (2001), pp. 1-21
  63. Manos, PS; Stanford, AM, The biogeography of Fagaceae: tracking the Tertiary history of temperate and subtropical forests of the Northern Hemisphere, International Journal of Plant Sciences, vol. 162 no. 6 SUPPL. (2001), pp. S77-S93
  64. Cannon, CH; Manos, PS, The Bornean Lithocarpus Bl. section Synaedrys (Lindl.) Barnett (Fagaceae): Its circumscription and description of a new species, Botanical Journal of the Linnean Society, vol. 133 no. 3 (January, 2000), pp. 343-357, Oxford University Press (OUP), ISSN 0024-4074
  65. Manos, PS; Doyle, JJ; Nixon, KC, Phylogeny, biogeography, and processes of molecular differentiation in Quercus subgenus Quercus (Fagaceae)., Molecular Phylogenetics and Evolution, vol. 12 no. 3 (August, 1999), pp. 333-349, ISSN 1055-7903
  66. Miller, RE; Rausher, MD; Manos, PS, Phylogenetic systematics of Ipomoea (Convolvulaceae) based on ITS and Waxy sequences, Systematic Botany, vol. 24 no. 2 (January, 1999), pp. 209-227, JSTOR
  67. Manos, P; Steele, K, Phylogenetic analyses of "higher" Hamamelididae based on plastid sequence data., Am J Bot, vol. 84 no. 10 (October, 1997), pp. 1407
  68. Manos, P, Systematics of Nothofagus (Nothofagaceae) based on rDNA spacer sequences (ITS): taxonomic congruence with morphology and plastid sequences., Am J Bot, vol. 84 no. 8 (August, 1997), pp. 1137

Other

  1. P.S. Manos, Fagales, in Encyclopedia of Life Sciences (2001), Macmillan Reference Ltd.