
Papers Published

 Oğuz, EC; Socolar, JES; Steinhardt, PJ; Torquato, S, Hyperuniformity and antihyperuniformity in onedimensional substitution tilings.,
Acta Crystallographica. Section A, Foundations and Advances, vol. 75 no. Pt 1
(January, 2019),
pp. 313 [doi] [abs]
.
 Pham, AT; Zhuang, Y; Detwiler, P; Socolar, JES; Charbonneau, P; Yellen, BB, Phase diagram and aggregation dynamics of a monolayer of paramagnetic colloids.,
Physical Review. E, vol. 95 no. 51
(May, 2017),
pp. 052607 [doi] [abs]
.
 Oğuz, EC; Socolar, JES; Steinhardt, PJ; Torquato, S, Hyperuniformity of quasicrystals,
Physical Review B, vol. 95 no. 5
(February, 2017), American Physical Society (APS) [doi] .
 Socolar, JES; Lubensky, TC; Kane, CL, Mechanical graphene,
New Journal of Physics, vol. 19 no. 2
(February, 2017),
pp. 025003025003, IOP Publishing [doi] .
 Rutkowski, DM; Marcoux, C; Socolar, JES; Hall, CK, Formation of limitperiodic structures by quadrupole particles confined to a triangular lattice,
Physical Review. E, vol. 95 no. 1
(January, 2017), American Physical Society (APS) [doi] [abs]
.
 Hann, CT; Socolar, JES; Steinhardt, PJ, Local growth of icosahedral quasicrystalline tilings,
Physical Review B, vol. 94 no. 1
(July, 2016), American Physical Society (APS) [1604.02479v1], [doi] [abs]
.
 Marcoux, C; Socolar, JES, Sparse phonon modes of a limitperiodic structure,
Physical Review B, vol. 93 no. 17
(May, 2016), American Physical Society (APS) [PhysRevB.93.174102], [doi] [abs]
.
 Fu, L; Steinhardt, W; Zhao, H; Socolar, JES; Charbonneau, P, Hard sphere packings within cylinders.,
Soft Matter, vol. 12 no. 9
(March, 2016),
pp. 25052514 [doi] [abs]
.
 Marcoux, C; Byington, TW; Qian, Z; Charbonneau, P; Socolar, JES, Erratum: Emergence of limitperiodic order in tiling models [Phys. Rev. E90, 012136 (2014)],
Physical Review. E, vol. 93 no. 2
(February, 2016), American Physical Society (APS) [doi] .
 Yang, Y; Fu, L; Marcoux, C; Socolar, JES; Charbonneau, P; Yellen, BB, Phase transformations in binary colloidal monolayers.,
Soft Matter, vol. 11 no. 12
(March, 2015),
pp. 24042415 [doi] [abs]
.
 Sun, M; Cheng, X; Socolar, JES, Regulatory logic and pattern formation in the early sea urchin embryo.,
Journal of Theoretical Biology, vol. 363
(December, 2014),
pp. 8092 [doi] [abs]
.
 Marcoux, C; Byington, TW; Qian, Z; Charbonneau, P; Socolar, JES, Emergence of limitperiodic order in tiling models.,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 90 no. 1
(July, 2014),
pp. 012136, American Physical Society [PhysRevE.90.012136], [doi] [abs]
.
 Cheng, X; Lyons, DC; Socolar, JES; McClay, DR, Delayed transition to new cell fates during cellular reprogramming.,
Developmental Biology, vol. 391 no. 2
(July, 2014),
pp. 147157 [S001216061400222X], [doi] [abs]
.
 Sun, M; Cheng, X; Socolar, JES, Causal structure of oscillations in gene regulatory networks: Boolean analysis of ordinary differential equation attractors.,
Chaos, vol. 23 no. 2
(June, 2013),
pp. 025104 [23822502], [doi] [abs]
.
 Cheng, X; Sun, M; Socolar, JES, Autonomous Boolean modelling of developmental gene regulatory networks,
Journal of the Royal Society, Interface, vol. 10 no. 78
(January, 2013),
pp. 20120574 [23034351], [doi] [abs]
.
 Cheng, X; Sun, M; Socolar, JES, Autonomous Boolean modelling of developmental gene regulatory networks.,
Journal of the Royal Society, Interface, vol. 10 no. 78
(January, 2013),
pp. 20120574 [23034351], [doi] [abs]
.
 Byington, T; Socolar, JES, Hierarchical freezing of limitperiodic structure,
Physical Review E
(November, 2012) .
 Gong, X; Socolar, JES, Quantifying the complexity of random Boolean networks.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 85 no. 6 Pt 2
(June, 2012),
pp. 066107 [23005162], [doi] [abs]
.
 Durrett, R; Gleeson, JP; Lloyd, AL; Mucha, PJ; Shi, F; Sivakoff, D; Socolar, JES; Varghese, C, Graph fission in an evolving voter model.,
Proc Natl Acad Sci U S A, vol. 109 no. 10
(March, 2012),
pp. 36823687 [22355142], [doi] [abs]
.
 Socolar, JES; Taylor, JM, Forcing Nonperiodicity with a Single Tile,
The Mathematical Intelligencer, vol. 34 no. 1
(Spring, 2012),
pp. 1828, Springer Nature [doi] [abs]
.
 Byington, TW; Socolar, JES, Hierarchical freezing in a lattice model.,
Phys Rev Lett, vol. 108 no. 4
(January, 2012),
pp. 045701 [22400863], [doi] [abs]
.
 Khalil, KS; Sagastegui, A; Li, Y; Tahir, MA; Socolar, JES; Wiley, BJ; Yellen, BB, Binary colloidal structures assembled through Ising interactions.,
Nature Communications, vol. 3
(January, 2012),
pp. 794 [22531179], [doi] [abs]
.
 Sun, M; Socolar, JES, Comparison of autonomous Boolean network dynamics and ODE models,
Chaos
(2012) .
 Socolar, JES, Local action, global impact: forcing nonperiodicity with a single structural unit.,
Chaos, vol. 21 no. 4
(December, 2011),
pp. 041106 [22225336], [doi] [abs]
.
 Socolar, JES; Taylor, JM, An aperiodic hexagonal tile,
Journal of Combinatorial Theory, Series A, vol. 118 no. 8
(November, 2011),
pp. 22072231, Elsevier BV [doi] [abs]
.
 Cavalcante, HLDDS; Gauthier, DJ; Socolar, JES; Zhang, R, On the origin of chaos in autonomous Boolean networks.,
Philosophical Transactions. Series A, Mathematical, Physical, and Engineering Sciences, vol. 368 no. 1911
(January, 2010),
pp. 495513 [20008414], [doi] [abs]
.
 Sevim, V; Gong, X; Socolar, JES, Reliability of transcriptional cycles and the yeast cellcycle oscillator.,
Plos Computational Biology, vol. 6 no. 7
(2010),
pp. e1000842 [20628620], [doi] [abs]
.
 Zhang, R; de S Cavalcante, HLD; Gao, Z; Gauthier, DJ; Socolar, JES; Adams, MM; Lathrop, DP, Boolean chaos.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 80 no. 4 Pt 2
(October, 2009),
pp. 045202 [19905381], [doi] [abs]
.
 Norrell, J; Socolar, JE, Boolean modeling of collective effects in complex networks.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 79 no. 6
(June, 2009),
pp. nihpa131303 [19649269], [doi] [abs]
.
 Orlando, DA; Lin, CY; Bernard, A; Wang, JY; Socolar, JES; Iversen, ES; Hartemink, AJ; Haase, SB, Global control of cellcycle transcription by coupled CDK and network oscillators.,
Nature, vol. 453 no. 7197
(June, 2008),
pp. 944947 [18463633], [doi] [abs]
.
 Socolar, JES, TimeDelay Control for Discrete Maps
(May, 2008),
pp. 2945, WileyVCH Verlag GmbH & Co. KGaA [doi] [abs]
.
 D.A. Orlando, C.Y. Lin, A. Bernard, J.Y. Wang, J.E.S. Socolar, E.S. Iversen, A.J. Hartemink, and S.B. Haase, Global control of cellcycle transcription by coupled CDK and network oscillators,
Nature
(May, 2008) [doi] .
 Tighe, BP; Socolar, JES, Nonlinear elastic stress response in granular packings.,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 77 no. 3 Pt 1
(March, 2008),
pp. 031303 [18517366], [doi] [abs]
.
 Ribeiro, AS; Kauffman, SA; LloydPrice, J; Samuelsson, B; Socolar, JES, Mutual information in random Boolean models of regulatory networks.,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 77 no. 1 Pt 1
(January, 2008),
pp. 011901 [18351870], [doi] [abs]
.
 J.E.S. Socolar, Timedelay control for discrete maps,
in Handbook of Chaos Control, edited by E. Scholl and H. G. Schuster
(December, 2007), WileyVCH Verlag GmbH [html] [abs]
.
 Norrell, J; Samuelsson, B; Socolar, JES, Attractors in continuous and Boolean networks.,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 76 no. 4 Pt 2
(October, 2007),
pp. 046122 [17995075], [doi] [abs]
.
 Berger, CM; Cain, JW; Socolar, JES; Gauthier, DJ, Control of electrical alternans in simulations of paced myocardium using extended timedelay autosynchronization.,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 76 no. 4 Pt 1
(October, 2007),
pp. 041917(Selected for Virtual Journal of Biological Physics Research.)
[17995036], [doi] [abs]
.
 Socolar, JES, Erratum,
The Mathematical Intelligencer, vol. 29 no. 4
(September, 2007),
pp. 66, Springer Nature [doi] .
 Shreim, A; Grassberger, P; Nadler, W; Samuelsson, B; Socolar, JES; Paczuski, M, Network analysis of the state space of discrete dynamical systems.,
Physical Review Letters, vol. 98 no. 19
(May, 2007),
pp. 198701 [17677672], [doi] [abs]
.
 Socolar, JES, More ways to tile with only one shape polygon,
The Mathematical Intelligencer, vol. 29 no. 2
(March, 2007),
pp. 3338, Springer Nature [pdf], [doi] [abs]
.
 Foster, DV; Kauffman, SA; Socolar, JES, Network growth models and genetic regulatory networks.,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 73 no. 3 Pt 1
(March, 2006),
pp. 031912 [16605563], [doi] [abs]
.
 J.E.S. Socolar, Nonlinear Dynamical Systems,
in Complex Systems Science and Biomedicine, edited by Deisboeck and Kresh
(February, 2006), Kluwer .
 Samuelsson, B; Socolar, JES, Exhaustive percolation on random networks,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 74 no. 3
(2006),
pp. 031912, American Physical Society (APS) [e036113], [doi] [abs]
.
 Dealy, S; Kauffman, S; Socolar, J, Modeling pathways of differentiation in genetic regulatory networks with Boolean networks,
Complexity, vol. 11 no. 1
(September, 2005),
pp. 5260, WILEY [doi] [abs]
.
 Tighe, BP; Socolar, JES; Schaeffer, DG; Mitchener, WG; Huber, ML, Force distributions in a triangular lattice of rigid bars.,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 72 no. 3 Pt 1
(September, 2005),
pp. 031306 [16241425], [doi] [abs]
.
 Harrington, I; Socolar, JES, Design and robustness of delayed feedback controllers for discrete systems,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 69 no. 5
(January, 2004),
pp. 8 [doi] [abs]
.
 Hövel, P; Socolar, JES, Stability domains for timedelay feedback control with latency.,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 68 no. 3 Pt 2
(September, 2003),
pp. 036206 [14524867], [doi] [abs]
.
 Socolar, J, Discrete models of force chain networks,
Discrete and Continuous Dynamical Systems Series B, vol. 3 no. 4
(August, 2003),
pp. 601618, American Institute of Mathematical Sciences (AIMS) [0212162], [doi] [abs]
.
 Socolar, JES; Kauffman, SA, Scaling in ordered and critical random boolean networks.,
Physical Review Letters, vol. 90 no. 6
(February, 2003),
pp. 068702 [12633339], [doi] [abs]
.
 Hövel, P; Socolar, JES, Stability domains for timedelay feedback control with latency,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 68 no. 3 2
(2003),
pp. 362061362067 [abs]
.
 Otto, M; Bouchaud, JP; Claudin, P; Socolar, JES, Anisotropy in granular media: Classical elasticity and directedforce chain network,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 67 no. 3 1
(2003),
pp. 031302/1031302/24 [0211015v2], [doi] [abs]
.
 Socolar, JES; Schaeffer, DG; Claudin, P, Erratum to: Directed force chain networks and stress response in static granular materials,
The European Physical Journal. E, Soft Matter, vol. 8 no. 4
(July, 2002),
pp. 453453, Springer Nature [doi] .
 Socolar, JES; Schaeffer, DG; Claudin, P, Directed force chain networks and stress response in static granular materials,
European Physical Journal E, vol. 7 no. 4
(2002),
pp. 353370 [0201242] [abs]
.
 Beck, O; Amann, A; Schöll, E; Socolar, JES; Just, W, Comparison of timedelayed feedback schemes for spatiotemporal control of chaos in a reactiondiffusion system with global coupling,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 66 no. 1
(2002),
pp. 016213/1016213/6, American Physical Society (APS) [doi] [abs]
.
 Harrington, I; Socolar, JE, Limitation on stabilizing plane waves via timedelay feedback.,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 64 no. 5 Pt 2
(November, 2001),
pp. 056206 [11736053], [doi] [abs]
.
 Socolar, JES; Richards, S; Wilson, WG, Evolution in a spatially structured population subject to rare epidemics,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 63 no. 4
(January, 2001),
pp. 419081419088 [doi] [abs]
.
 J.E.S Socolar, Chaos,
in Encyclopedia of Physical Science and Technology, 3rd Edition, edited by R. Meyers
(2001), Academic Press(revision of article by R. Jensen.)
.
 BLEICH, MICHAELE; SOCOLAR, JOSHUAES, DELAYED FEEDBACK CONTROL OF A PACED EXCITABLE OSCILLATOR,
International Journal of Bifurcation and Chaos, vol. 10 no. 03
(March, 2000),
pp. 603609, World Scientific Pub Co Pte Lt [doi] [abs]
.
 Richards, SA; Wilson, WG; Socolar, JE, Selection for intermediate mortality and reproduction rates in a spatially structured population.,
Proceedings of the Royal Society B: Biological Sciences, vol. 266 no. 1436
(December, 1999),
pp. 23832388 [10643082], [doi] [abs]
.
 Sexton, MG; Socolar, JE; Schaeffer, DG, Force distribution in a scalar model for noncohesive granular material.,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 60 no. 2 Pt B
(August, 1999),
pp. 19992008 [11969992] [abs]
.
 Socolar, JES; Gauthier, DJ, Analysis and comparison of multipledelay schemes for controlling unstable fixed points of discrete maps,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 57 no. 6
(June, 1998),
pp. 65896595, American Physical Society (APS) [doi] [abs]
.
 Socolar, JES, Average stresses and force fluctuations in noncohesive granular materials,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 57 no. 3
(March, 1998),
pp. 32043215, American Physical Society (APS) [9710089v1], [doi] [abs]
.
 Egolf, DA; Socolar, JES, Failure of linear control in noisy coupled map lattices,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 57 no. 5
(1998),
pp. 52715275, American Physical Society (APS) [doi] [abs]
.
 Sukow, DW; Bleich, ME; Gauthier, DJ; Socolar, JES, Controlling chaos in a fast diode resonator using extended timedelay autosynchronization: Experimental observations and theoretical analysis.,
Chaos, vol. 7 no. 4
(December, 1997),
pp. 560576 [12779682], [doi] [abs]
.
 Gauthier, DJ; Socolar, JES, Comment on ``Dynamic Control of Cardiac Alternans'',
Physical Review Letters, vol. 79 no. 24
(December, 1997),
pp. 49384938, American Physical Society (APS) [doi] .
 Bleich, ME; Hochheiser, D; Moloney, JV; Socolar, JES, Controlling extended systems with spatially filtered, timedelayed feedback,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 55 no. 3
(1997),
pp. 21192126, American Physical Society (APS) [doi] [abs]
.
 Bleich, ME; Socolar, JES, Controlling spatiotemporal dynamics with timedelay feedback,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 54 no. 1
(July, 1996),
pp. R17R20 [9965164], [doi] .
 Bleich, ME; Socolar, JES, Stability of periodic orbits controlled by timedelay feedback,
Physics Letters A, vol. 210 no. 12
(January, 1996),
pp. 8794, Elsevier BV [doi] [abs]
.
 Socolar, JE; Sukow, DW; Gauthier, DJ, Stabilizing unstable periodic orbits in fast dynamical systems.,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 50 no. 4
(October, 1994),
pp. 32453248 [9962372], [doi] .
 Gauthier, DJ; Sukow, DW; Concannon, HM; Socolar, JE, Stabilizing unstable periodic orbits in a fast diode resonator using continuous timedelay autosynchronization.,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 50 no. 3
(September, 1994),
pp. 23432346 [9962244] .
 Grinstein, G; Jayaprakash, C; Socolar, JE, Scale invariance of nonconserved quantities in driven systems.,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 48 no. 2
(August, 1993),
pp. R643R646 [9960763] .
 Socolar, JE; Grinstein, G; Jayaprakash, C, On selforganized criticality in nonconserving systems.,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 47 no. 4
(April, 1993),
pp. 23662376, AMERICAN PHYSICAL SOC [9960267], [doi] .
 Krug, J; Socolar, JE; Grinstein, G, Surface fluctuations and criticality in a class of onedimensional sandpile models.,
Physical Review A, vol. 46 no. 8
(October, 1992),
pp. R4479R4482 [9908766] .
 Socolar, JES, Theory of Packings of Identical Hard Disks Generated by Ballistic Deposition,
Epl (Europhysics Letters), vol. 18 no. 1
(February, 1992),
pp. 3944, IOP Publishing [doi] .
 Krug, J; Socolar, JE, Comment on "Scalings of growing selforganized surfaces",
Phys Rev Lett, vol. 68 no. 5
(February, 1992),
pp. 722 [10045973], [doi] .
 J.E.S. Socolar, Growth Rules for Quasicrystals,
in Quasicrystals: The State of the Art, edited by D. DiVincenzo and P. Steinhardt
(1991), World Scientific, Singapore .
 Socolar, JES, Weak matching rules for quasicrystals,
Communications in Mathematical Physics, vol. 129 no. 3
(May, 1990),
pp. 599619, Springer Nature [doi] [abs]
.
 J.E.S. Socolar, The Alternation Condition and 2D Quasicrystals,
in Quasicrystals, Springer Series in SolidState Sciences, edited by T. Fujiwara and T. Ogawa, vol. 93
(1990), SpringerVerlag, Berlin .
 Socolar, JE, Simple octagonal and dodecagonal quasicrystals.,
Physical Review. B, Condensed Matter, vol. 39 no. 15
(May, 1989),
pp. 1051910551 [9947860] .
 Onoda, G; Steinhardt, PJ; DiVincenzo, D; Socolar, JE, Onoda etal. reply.,
Phys Rev Lett, vol. 62 no. 10
(March, 1989),
pp. 1210 [10039608], [doi] .
 J.E.S. Socolar, Locality Constraints and 2D Quasicrystals,
in Quasicrystals  Adriatico Anniversary Research Conference, edited by M.V. Jaric and S. Lundqvist
(1989), World Scientific, Singapore .
 Onoda, GY; Steinhardt, PJ; DiVincenzo, DP; Socolar, JE, Growing perfect quasicrystals.,
Phys Rev Lett, vol. 60 no. 25
(June, 1988),
pp. 26532656 [10038414], [doi] .
 Socolar, JE; Wright, DC, Explanation of peak shapes observed in diffraction from icosahedral quasicrystals.,
Phys Rev Lett, vol. 59 no. 2
(July, 1987),
pp. 221224 [10035483], [doi] .
 Lubensky, TC; Socolar, JE; Steinhardt, PJ; Bancel, PA; Heiney, AP, Distortion and peak broadening in quasicrystal diffraction patterns.,
Phys Rev Lett, vol. 57 no. 12
(September, 1986),
pp. 14401443 [10033450], [doi] .
 Socolar, JE; Lubensky, TC; Steinhardt, PJ, Phonons, phasons, and dislocations in quasicrystals.,
Physical Review. B, Condensed Matter, vol. 34 no. 5
(September, 1986),
pp. 33453360 [9940073], [doi] .
 Socolar, JE; Steinhardt, PJ, Quasicrystals. II. Unitcell configurations.,
Physical Review. B, Condensed Matter, vol. 34 no. 2
(July, 1986),
pp. 617647 [9939668] .
 Socolar, JES, Phason Strain in Quasicrystals,
Journal de Physique, vol. C3
(1986),
pp. 217227 .
 Socolar, JE; Steinhardt, PJ; Levine, D, Quasicrystals with arbitrary orientational symmetry., Rapid Communication,
Physical Review. B, Condensed Matter, vol. 32 no. 8
(October, 1985),
pp. 55475550 [9937798] .
 Mele, EJ; Socolar, J, Numerical integration of the time evolution operator: Excitedstate dynamics in conjugated molecules, Quantum Chemistry Symposium,
International Journal of Quantum Chemistry, vol. 26 no. S18
(March, 1984),
pp. 347358, WILEY [Gateway.cgi], [doi] .
 Gollub, JP; Romer, EJ; Socolar, JE, Trajectory divergence for coupled relaxation oscillators: Measurements and models,
Journal of Statistical Physics, vol. 23 no. 3
(September, 1980),
pp. 321333, Springer Nature [doi] [abs]
.

Papers Submitted

 Y. Yang, L. Fu, C. Marcoux, J. E. S. Socolar, P. Charbonneau, B. B. Yellen, Martensitic transformations in binary colloidal monolayers,
PNAS
(October, 2014) .