Publications of Joshua Socolar    :chronological  alphabetical  combined  bibtex listing:

Papers Published
  1. Y Yang, L Fu, C Marcoux, JE Socolar, P Charbonneau and BB Yellen, Phase transformations in binary colloidal monolayers., Soft matter, vol. 11 no. 12 (March, 2015), pp. 2404-2415 [doi] [abs] .
  2. Y. Yang, L. Fu, C. Marcoux, P. Charbonneau, J.E.S. Socolar, B. B. Yellen, Phase transformations in binary colloidal monolayers, Soft Matter (February, 2015) [doi] [abs] .
  3. M Sun, X Cheng and JE Socolar, Regulatory logic and pattern formation in the early sea urchin embryo., Journal of theoretical biology, vol. 363 (December, 2014), pp. 80-92 [doi] [abs] .
  4. C Marcoux, TW Byington, Z Qian, P Charbonneau and JE Socolar, Emergence of limit-periodic order in tiling models., Physical review. E, Statistical, nonlinear, and soft matter physics, vol. 90 no. 1 (August, 2014), pp. 012136, American Physical Society [PhysRevE.90.012136], [doi] [abs] .
  5. X Cheng, DC Lyons, JE Socolar and DR McClay, Delayed transition to new cell fates during cellular reprogramming., Developmental biology, vol. 391 no. 2 (May, 2014), pp. 147-157 [S001216061400222X], [doi] [abs] .
  6. M Sun, X Cheng and JE Socolar, Causal structure of oscillations in gene regulatory networks: Boolean analysis of ordinary differential equation attractors., Chaos, vol. 23 no. 2 (July, 2013), pp. 025104 [23822502], [doi] [abs] .
  7. M Sun and JES Socolar, Comparison of autonomous Boolean network dynamics and ODE models, Chaos (January, 2013) .
  8. T Byington and JES Socolar, Hierarchical freezing of limit-periodic structure, Physical Review E (January, 2013) .
  9. X Cheng, M Sun and JES Socolar, Autonomous Boolean modelling of developmental gene regulatory networks, J. Royal Soc. Interface, vol. 10 no. 78 (January, 2013), pp. 20120574 [23034351], [doi] [abs] .
  10. JES Socolar and PJ Steinhardt, Quasicrystals II: Unit Cell Structures, Phys. Rev. B, vol. 34 (January, 2013), pp. 617-647 [doi] .
  11. JES Socolar, Phason Strain in Quasicrystals, Journal de Physique, vol. C3 (January, 2013), pp. 217-227 .
  12. GY Onoda, PJ Steinhardt, DP DiVincenzo and JES Socolar, Reply to Comment on PRL, Phys. Rev. Lett., vol. 62 no. 10 (January, 2013), pp. 1210 [10039608], [doi] .
  13. JES Socolar, Theory of Packings of Identical Hard Disks Generated by Ballistic Deposition, Europhys. Lett., vol. 18 (January, 2013), pp. 39 .
  14. J Krug, JES Socolar and G Grinstein, Surface Fluctuations and Criticality in a Class of 1D Sandpile Models, Phys. Rev. A (RC), vol. 46 no. 8 (January, 2013), pp. 4479 [9908766] .
  15. I Harrington and JES Socolar, Design and robustness of delayed feedback controllers for discrete systems, Phys. Rev. E, vol. 69 no. 5 1 (January, 2013), pp. 56207 [abs] .
  16. O Beck, A Amann, E Schoell and JES Socolar, `Comparison of time-delayed feedback schemes for spatio-temporal control of chaos, Phys. Rev. E, vol. 66 no. 1 (January, 2013), pp. 016213 [doi] [abs] .
  17. DJ Gauthier and JES Socolar, Comment on Dynamic Control of Cardiac Alternans, Physical Review Letters, vol. 79 (January, 2013), pp. 4938 .
  18. X Cheng, M Sun and JE Socolar, Autonomous Boolean modelling of developmental gene regulatory networks., J R Soc Interface, vol. 10 no. 78 (November, 2012), pp. 20120574 [23034351], [doi] [abs] .
  19. X Gong and JE Socolar, Quantifying the complexity of random Boolean networks., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 85 no. 6 Pt 2 (September, 2012), pp. 066107 [23005162], [doi] [abs] .
  20. KS Khalil, A Sagastegui, Y Li, MA Tahir, JE Socolar, BJ Wiley and BB Yellen, Binary colloidal structures assembled through Ising interactions., Nat Commun, vol. 3 (April, 2012), pp. 794 [22531179], [doi] [abs] .
  21. TW Byington and JE Socolar, Hierarchical freezing in a lattice model., Phys Rev Lett, vol. 108 no. 4 (March, 2012), pp. 045701 [22400863], [doi] [abs] .
  22. R Durrett, JP Gleeson, AL Lloyd, PJ Mucha, F Shi, D Sivakoff, JE Socolar and C Varghese, Graph fission in an evolving voter model., Proc Natl Acad Sci U S A, vol. 109 no. 10 (March, 2012), pp. 3682-3687 [22355142], [doi] [abs] .
  23. JES Socolar and JM Taylor, Forcing Nonperiodicity with a Single Tile, Mathematical Intelligencer, vol. 34 no. 1 (Spring, 2012), pp. 18-28 [doi] [abs] .
  24. JE Socolar, Local action, global impact: forcing nonperiodicity with a single structural unit., Chaos, vol. 21 no. 4 (January, 2012), pp. 041106 [22225336], [doi] [abs] .
  25. JES Socolar and JM Taylor, An aperiodic hexagonal tile, Journal of Combinatorial Theory. Series A, vol. 118 no. 8 (November, 2011), pp. 2207-2231, Academic Press, Inc. [doi] [abs] .
  26. V Sevim, X Gong and JE Socolar, Reliability of transcriptional cycles and the yeast cell-cycle oscillator., PLoS Comput Biol, vol. 6 no. 7 (July, 2010), pp. e1000842 [20628620], [doi] [abs] .
  27. HL Cavalcante, DJ Gauthier, JE Socolar and R Zhang, On the origin of chaos in autonomous Boolean networks., Philos Trans A Math Phys Eng Sci, vol. 368 no. 1911 (December, 2009), pp. 495-513 [20008414], [doi] [abs] .
  28. R Zhang, HL de S Cavalcante, Z Gao, DJ Gauthier, JE Socolar, MM Adams and DP Lathrop, Boolean chaos., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 80 no. 4 Pt 2 (November, 2009), pp. 045202 [19905381], [doi] [abs] .
  29. J Norrell and JE Socolar, Boolean modeling of collective effects in complex networks., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 79 no. 6 (June, 2009), pp. nihpa131303 [19649269], [doi] [abs] .
  30. DA Orlando, CY Lin, A Bernard, JY Wang, JE Socolar, ES Iversen, AJ Hartemink and SB Haase, Global control of cell-cycle transcription by coupled CDK and network oscillators., Nature, vol. 453 no. 7197 (June, 2008), pp. 944-947 [18463633], [doi] [abs] .
  31. BP Tighe and JE Socolar, Nonlinear elastic stress response in granular packings., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 77 no. 3 Pt 1 (June, 2008), pp. 031303 [18517366], [doi] [abs] .
  32. JES Socolar, Time-Delay Control for Discrete Maps (May, 2008), pp. 29-45 [doi] [abs] .
  33. D.A. Orlando, C.Y. Lin, A. Bernard, J.Y. Wang, J.E.S. Socolar, E.S. Iversen, A.J. Hartemink, and S.B. Haase, Global control of cell-cycle transcription by coupled CDK and network oscillators, Nature (May, 2008) [doi] .
  34. AS Ribeiro, SA Kauffman, J Lloyd-Price, B Samuelsson and JE Socolar, Mutual information in random Boolean models of regulatory networks., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 77 no. 1 Pt 1 (March, 2008), pp. 011901 [18351870], [doi] [abs] .
  35. J.E.S. Socolar, Time-delay control for discrete maps, in Handbook of Chaos Control, edited by E. Scholl and H. G. Schuster (December, 2007), Wiley-VCH Verlag GmbH [html] [abs] .
  36. J Norrell, B Samuelsson and JE Socolar, Attractors in continuous and Boolean networks., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 76 no. 4 Pt 2 (November, 2007), pp. 046122 [17995075], [doi] [abs] .
  37. CM Berger, JW Cain, JE Socolar and DJ Gauthier, Control of electrical alternans in simulations of paced myocardium using extended time-delay autosynchronization., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 76 no. 4 Pt 1 (November, 2007), pp. 041917(Selected for Virtual Journal of Biological Physics Research.) [17995036], [doi] [abs] .
  38. A Shreim, P Grassberger, W Nadler, B Samuelsson, JE Socolar and M Paczuski, Network analysis of the state space of discrete dynamical systems., Phys Rev Lett, vol. 98 no. 19 (August, 2007), pp. 198701 [17677672], [doi] [abs] .
  39. JES Socolar, Erratum: The hexagonal parquet tiling, k-isohedral monotiles with arbitrarily large k (The Mathematical Intelligencer 29:2 (33-38)), Mathematical Intelligencer, vol. 29 no. 4 (2007), pp. 6- [doi] .
  40. JES Socolar, The hexagonal parquet tiling k-isohedral monotiles with arbitrarily large k, Mathematical Intelligencer, vol. 29 no. 2 (2007), pp. 33-38 [pdf], [doi] [abs] .
  41. DV Foster, SA Kauffman and JE Socolar, Network growth models and genetic regulatory networks., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 73 no. 3 Pt 1 (April, 2006), pp. 031912 [16605563], [doi] [abs] .
  42. J.E.S. Socolar, Nonlinear Dynamical Systems, in Complex Systems Science and Biomedicine, edited by Deisboeck and Kresh (February, 2006), Kluwer .
  43. B Samuelsson and JES Socolar, Exhaustive percolation on random networks, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 74 no. 3 (2006), pp. 031912 [e036113], [doi] [abs] .
  44. BP Tighe, JE Socolar, DG Schaeffer, WG Mitchener and ML Huber, Force distributions in a triangular lattice of rigid bars., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 72 no. 3 Pt 1 (October, 2005), pp. 031306 [16241425], [doi] [abs] .
  45. S Dealy, S Kauffman and J Socolar, Modeling pathways of differentiation in genetic regulatory networks with Boolean networks, Complexity, vol. 11 no. 1 (2005), pp. 52-60 [doi] [abs] .
  46. I Harrington and JES Socolar, Design and robustness of delayed feedback controllers for discrete systems, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 69 no. 5 1 (2004), pp. 056207-1-056207-8 [abs] .
  47. JES Socolar, Discrete models of force chain networks, Discrete and Continuous Dynamical Systems - Series B, vol. 3 no. 4 (November, 2003), pp. 601-618 [0212162] [abs] .
  48. P Hövel and JE Socolar, Stability domains for time-delay feedback control with latency., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 68 no. 3 Pt 2 (October, 2003), pp. 036206 [14524867], [doi] [abs] .
  49. M Otto, JP Bouchaud, P Claudin and JE Socolar, Anisotropy in granular media: classical elasticity and directed-force chain network., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 67 no. 3 Pt 1 (April, 2003), pp. 031302 [12689059], [doi] [abs] .
  50. JE Socolar and SA Kauffman, Scaling in ordered and critical random boolean networks., Phys Rev Lett, vol. 90 no. 6 (March, 2003), pp. 068702 [12633339], [doi] [abs] .
  51. JES Socolar, DG Schaeffer and P Claudin, Directed force chain networks and stress response in static granular materials, European Physical Journal E, vol. 7 no. 4 (December, 2002), pp. 353-370 [0201242] [abs] .
  52. M Otto, J-P Bouchaud, P Claudin and JES Socolar, Anisotropy in granular media: classical elasticity and directed force chain network, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 67 no. 3 1 (November, 2002), pp. 031302/1-031302/24 [0211015v2], [doi] [abs] .
  53. MG Sexton, JE Socolar and DG Schaeffer, Force distribution in a scalar model for noncohesive granular material., Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 60 no. 2 Pt B (April, 2002), pp. 1999-2008 [11969992] [abs] .
  54. JES Socolar, DG Schaeffer and P Claudin, Erratum: Directed force chain networks and stress response in static granular materials (The European Physical Journal E (2002) 7 (353-370)), European Physical Journal E, vol. 8 no. 4 (2002), pp. 453- .
  55. O Beck, A Amann, E Schöll, JES Socolar and W Just, Comparison of time-delayed feedback schemes for spatiotemporal control of chaos in a reaction-diffusion system with global coupling, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 66 no. 1 (2002), pp. 016213/1-016213/6 [doi] [abs] .
  56. I Harrington and JE Socolar, Limitation on stabilizing plane waves via time-delay feedback., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 64 no. 5 Pt 2 (December, 2001), pp. 056206 [11736053], [doi] [abs] .
  57. J.E.S Socolar, Chaos, in Encyclopedia of Physical Science and Technology, 3rd Edition, edited by R. Meyers (2001), Academic Press(revision of article by R. Jensen.) .
  58. JES Socolar, S Richards and WG Wilson, Evolution in a spatially structured population subject to rare epidemics, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 63 no. 4 I (2001), pp. 419081-419088 [abs] .
  59. SA Richards, WG Wilson and JE Socolar, Selection for intermediate mortality and reproduction rates in a spatially structured population., Proc Biol Sci, vol. 266 no. 1436 (February, 2000), pp. 2383-2388 [10643082], [doi] [abs] .
  60. ME Bleich and JES Socolar, Delayed feedback control of a paced excitable oscillator, International Journal of Bifurcation and Chaos in Applied Sciences and Engineering, vol. 10 no. 3 (2000), pp. 603-609 [abs] .
  61. GY Onoda, PJ Steinhardt, DP DiVincenzo and JE Socolar, Growing perfect quasicrystals., Phys Rev Lett, vol. 60 no. 25 (February, 1999), pp. 2653-2656 [10038414], [doi] .
  62. J Krug and JE Socolar, Comment on "Scalings of growing self-organized surfaces", Phys Rev Lett, vol. 68 no. 5 (February, 1999), pp. 722 [10045973], [doi] .
  63. G Onoda, PJ Steinhardt, D DiVincenzo and JE Socolar, Onoda etal. reply., Phys Rev Lett, vol. 62 no. 10 (February, 1999), pp. 1210 [10039608], [doi] .
  64. TC Lubensky, JE Socolar, PJ Steinhardt, PA Bancel and AP Heiney, Distortion and peak broadening in quasicrystal diffraction patterns., Phys Rev Lett, vol. 57 no. 12 (February, 1999), pp. 1440-1443 [10033450], [doi] .
  65. JE Socolar and DC Wright, Explanation of peak shapes observed in diffraction from icosahedral quasicrystals., Phys Rev Lett, vol. 59 no. 2 (February, 1999), pp. 221-224 [10035483], [doi] .
  66. JE Socolar, G Grinstein and C Jayaprakash, On self-organized criticality in nonconserving systems., Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 47 no. 4 (February, 1999), pp. 2366-2376 [9960267] .
  67. G Grinstein, C Jayaprakash and JE Socolar, Scale invariance of nonconserved quantities in driven systems., Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 48 no. 2 (February, 1999), pp. R643-R646 [9960763] .
  68. DJ Gauthier, DW Sukow, HM Concannon and JE Socolar, Stabilizing unstable periodic orbits in a fast diode resonator using continuous time-delay autosynchronization., Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 50 no. 3 (February, 1999), pp. 2343-2346 [9962244] .
  69. JE Socolar, DW Sukow and DJ Gauthier, Stabilizing unstable periodic orbits in fast dynamical systems., Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 50 no. 4 (February, 1999), pp. 3245-3248 [9962372] .
  70. ME Bleich and JE Socolar, Controlling spatiotemporal dynamics with time-delay feedback., Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 54 no. 1 (February, 1999), pp. R17-R20 [9965164] .
  71. JE Socolar, PJ Steinhardt and D Levine, Quasicrystals with arbitrary orientational symmetry., Rapid Communication, Phys Rev B Condens Matter, vol. 32 no. 8 (February, 1999), pp. 5547-5550 [9937798] .
  72. JE Socolar and PJ Steinhardt, Quasicrystals. II. Unit-cell configurations., Phys Rev B Condens Matter, vol. 34 no. 2 (February, 1999), pp. 617-647 [9939668] .
  73. JE Socolar, TC Lubensky and PJ Steinhardt, Phonons, phasons, and dislocations in quasicrystals., Phys Rev B Condens Matter, vol. 34 no. 5 (February, 1999), pp. 3345-3360 [9940073] .
  74. JE Socolar, Simple octagonal and dodecagonal quasicrystals., Phys Rev B Condens Matter, vol. 39 no. 15 (February, 1999), pp. 10519-10551 [9947860] .
  75. J Krug, JE Socolar and G Grinstein, Surface fluctuations and criticality in a class of one-dimensional sandpile models., Phys Rev A, vol. 46 no. 8 (January, 1999), pp. R4479-R4482 [9908766] .
  76. DA Egolf and JES Socolar, Failure of linear control in noisy coupled map lattices, Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 57 no. 5 SUPPL. A (1998), pp. 5271-5275 [abs] .
  77. JES Socolar and DJ Gauthier, Analysis and comparison of multiple-delay schemes for controlling unstable fixed points of discrete maps, Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 57 no. 6 (1998), pp. 6589-6595 [abs] .
  78. DW Sukow, ME Bleich, DJ Gauthier and JE Socolar, Controlling chaos in a fast diode resonator using extended time-delay autosynchronization: Experimental observations and theoretical analysis., Chaos, vol. 7 no. 4 (December, 1997), pp. 560-576 [12779682], [doi] [abs] .
  79. JES Socolar, Average stresses and force fluctuations in non-cohesive granular materials, Phys. Rev. E, vol. 57 (October, 1997), pp. 3204 [9710089v1], [doi] [abs] .
  80. ME Bleich, D Hochheiser, JV Moloney and JES Socolar, Controlling extended systems with spatially filtered, time-delayed feedback, Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 55 no. 3 SUPPL. A (1997), pp. 2119-2126 [abs] .
  81. ME Bleich and JES Socolar, Stability of periodic orbits controlled by time-delay feedback, Physics Letters, Section A: General, Atomic and Solid State Physics, vol. 210 no. 1-2 (1996), pp. 87-94 [abs] .
  82. J.E.S. Socolar, Growth Rules for Quasicrystals, in Quasicrystals: The State of the Art, edited by D. DiVincenzo and P. Steinhardt (1991), World Scientific, Singapore .
  83. J.E.S. Socolar, The Alternation Condition and 2D Quasicrystals, in Quasicrystals, Springer Series in Solid-State Sciences, edited by T. Fujiwara and T. Ogawa, vol. 93 (1990), Springer-Verlag, Berlin .
  84. JES Socolar, Weak matching rules for quasicrystals, Communications in Mathematical Physics, vol. 129 no. 3 (1990), pp. 599-619 [doi] [abs] .
  85. J.E.S. Socolar, Locality Constraints and 2D Quasicrystals, in Quasicrystals - Adriatico Anniversary Research Conference, edited by M.V. Jaric and S. Lundqvist (1989), World Scientific, Singapore .
  86. E MELE and J SOCOLAR, NUMERICAL-INTEGRATION OF THE TIME EVOLUTION OPERATOR - EXCITED-STATE DYNAMICS IN CONJUGATED MOLECULES, Quantum Chemistry Symposium, INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, vol. 18 (1984), pp. 347-358 [Gateway.cgi] .
  87. JP Gollub, EJ Romer and JE Socolar, Trajectory divergence for coupled relaxation oscillators: Measurements and models, Journal of Statistical Physics, vol. 23 no. 3 (1980), pp. 321-333 [doi] [abs] .
Papers Submitted
  1. Y. Yang, L. Fu, C. Marcoux, J. E. S. Socolar, P. Charbonneau, B. B. Yellen, Martensitic transformations in binary colloidal monolayers, PNAS (October, 2014) .