
Papers Published

 Y Yang, L Fu, C Marcoux, JE Socolar, P Charbonneau and BB Yellen, Phase transformations in binary colloidal monolayers.,
Soft matter, vol. 11 no. 12
(March, 2015),
pp. 24042415 [doi] [abs]
.
 Y. Yang, L. Fu, C. Marcoux, P. Charbonneau, J.E.S. Socolar, B. B. Yellen, Phase transformations in binary colloidal monolayers,
Soft Matter
(February, 2015) [doi] [abs]
.
 M. Sun, X. Cheng, and J. E. S. Socolar, Regulatory logic and pattern formation in the early sea urchin embryo.,
Journal of theoretical biology, vol. 363
(December, 2014),
pp. 8092 [doi] [abs]
.
 Marcoux, Catherine and Byington, Travis W. and Qian, Zongjin and Charbonneau, Patrick and Socolar, Joshua E. S., Emergence of limitperiodic order in tiling models.,
Physical review. E, Statistical, nonlinear, and soft matter physics, vol. 90 no. 1
(July, 2014),
pp. 012136, American Physical Society [PhysRevE.90.012136], [doi] [abs]
.
 X. Cheng, D. C. Lyons, J. E. S. Socolar, and D. R. McClay, Delayed transition to new cell fates during cellular reprogramming.,
Developmental biology, vol. 391 no. 2
(July, 2014),
pp. 147157 [S001216061400222X], [doi] [abs]
.
 M. Sun, X. Cheng, and J.E.S. Socolar, Causal structure of oscillations in gene regulatory networks: Boolean analysis of ordinary differential equation attractors.,
Chaos, vol. 23 no. 2
(June, 2013),
pp. 025104 [23822502], [doi] [abs]
.
 T Byington and JES Socolar, Hierarchical freezing of limitperiodic structure,
Physical Review E
(November, 2012) .
 X. Gong and J. E. S. Socolar, Quantifying the complexity of random Boolean networks.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 85 no. 6 Pt 2
(June, 2012),
pp. 066107 [23005162], [doi] [abs]
.
 R. Durrett, J. P. Gleeson, A. Lloyd, P. J. Mucha, F. Shi, D. Sivakoff, J. E. S. Socolar, C. Varghese, Graph fission in an evolving voter model.,
Proc Natl Acad Sci U S A, vol. 109 no. 10
(March, 2012),
pp. 36823687 [22355142], [doi] [abs]
.
 J.E.S. Socolar and J.M. Taylor, Forcing Nonperiodicity with a Single Tile,
Mathematical Intelligencer, vol. 34 no. 1
(Spring, 2012),
pp. 1828 [doi] [abs]
.
 T. Byington and J. E. S. Socolar, Hierarchical freezing in a lattice model.,
Phys Rev Lett, vol. 108 no. 4
(January, 2012),
pp. 045701 [22400863], [doi] [abs]
.
 X. Cheng, M. Sun and J. E. S. Socolar, Autonomous Boolean modelling of developmental gene regulatory networks,
J. Royal Soc. Interface, vol. 10 no. 78
(January, 2012),
pp. 20120574 [23034351], [doi] [abs]
.
 M Sun and JES Socolar, Comparison of autonomous Boolean network dynamics and ODE models,
Chaos
(2012) .
 Karim S. Khalil, Amanda Sagastegui, Yu Li, Mukarram A. Tahir, Joshua E. S. Socolar, Benjamin J. Wiley, Benjamin B. Yellen, Binary colloidal structures assembled through Ising interactions.,
Nat Commun, vol. 3
(2012),
pp. 794 [22531179], [doi] [abs]
.
 J. E. S. Socolar, Local action, global impact: forcing nonperiodicity with a single structural unit.,
Chaos, vol. 21 no. 4
(December, 2011),
pp. 041106 [22225336], [doi] [abs]
.
 Socolar, Joshua E. S. and Taylor, Joan M., An aperiodic hexagonal tile,
Journal of Combinatorial Theory. Series A, vol. 118 no. 8
(November, 2011),
pp. 22072231, Academic Press, Inc. [doi] [abs]
.
 H. L. D. de S. Cavalcante, D. J. Gauthier, J. E. S. Socolar, R. Zhang, On the origin of chaos in autonomous Boolean networks.,
Philos Trans A Math Phys Eng Sci, vol. 368 no. 1911
(January, 2010),
pp. 495513 [20008414], [doi] [abs]
.
 V. Sevim, X. Gong and J.E.S. Socolar, Reliability of transcriptional cycles and the yeast cellcycle oscillator.,
PLoS Comput Biol, vol. 6 no. 7
(2010),
pp. e1000842 [20628620], [doi] [abs]
.
 R. Zhang, H. L. D. de S.Cavalcante, Z. Gao, D. J. Gauthier, J. E. S. Socolar, M. M. Adams and D. P. Lathrop, Boolean chaos.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 80 no. 4 Pt 2
(October, 2009),
pp. 045202 [19905381], [doi] [abs]
.
 J. Norrell and J.E.S. Socolar, Boolean modeling of collective effects in complex networks.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 79 no. 6
(June, 2009),
pp. nihpa131303 [19649269], [doi] [abs]
.
 DA Orlando, CY Lin, A Bernard, JY Wang, JE Socolar, ES Iversen, AJ Hartemink and SB Haase, Global control of cellcycle transcription by coupled CDK and network oscillators.,
Nature, vol. 453 no. 7197
(June, 2008),
pp. 944947 [18463633], [doi] [abs]
.
 JES Socolar, TimeDelay Control for Discrete Maps
(May, 2008),
pp. 2945 [doi] [abs]
.
 D.A. Orlando, C.Y. Lin, A. Bernard, J.Y. Wang, J.E.S. Socolar, E.S. Iversen, A.J. Hartemink, and S.B. Haase, Global control of cellcycle transcription by coupled CDK and network oscillators,
Nature
(May, 2008) [doi] .
 B.P. Tighe and J.E.S. Socolar, Nonlinear elastic stress response in granular packings.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 77 no. 3 Pt 1
(March, 2008),
pp. 031303 [18517366], [doi] [abs]
.
 A.S. Ribeiro, S.A. Kauffman, J. LloydPrice, B. Samuelsson, J.E.S. Socolar, Mutual information in random Boolean models of regulatory networks.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 77 no. 1 Pt 1
(January, 2008),
pp. 011901 [18351870], [doi] [abs]
.
 J.E.S. Socolar, Timedelay control for discrete maps,
in Handbook of Chaos Control, edited by E. Scholl and H. G. Schuster
(December, 2007), WileyVCH Verlag GmbH [html] [abs]
.
 J. Norrell, B. Samuelsson, and J.E.S. Socolar, Attractors in continuous and Boolean networks.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 76 no. 4 Pt 2
(October, 2007),
pp. 046122 [17995075], [doi] [abs]
.
 C.M. Berger, J.W. Cain, J.E.S. Socolar, and D.J. Gauthier, Control of electrical alternans in simulations of paced myocardium using extended timedelay autosynchronization.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 76 no. 4 Pt 1
(October, 2007),
pp. 041917(Selected for Virtual Journal of Biological Physics Research.)
[17995036], [doi] [abs]
.
 A. Shreim, P. Grassberger, W. Nadler, B. Samuelsson, J.E.S. Socolar, and M. Paczuski, Network analysis of the state space of discrete dynamical systems.,
Phys Rev Lett, vol. 98 no. 19
(May, 2007),
pp. 198701 [17677672], [doi] [abs]
.
 JES Socolar, Erratum: The hexagonal parquet tiling, kisohedral monotiles with arbitrarily large k (The Mathematical Intelligencer 29:2 (3338)),
Mathematical Intelligencer, vol. 29 no. 4
(2007),
pp. 6 [doi] .
 J.E.S. Socolar, The hexagonal parquet tiling kisohedral monotiles with arbitrarily large k,
Mathematical Intelligencer, vol. 29 no. 2
(2007),
pp. 3338 [pdf], [doi] [abs]
.
 D. V. Foster, S. A. Kauffman, and J. E. S. Socolar, Network growth models and genetic regulatory networks.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 73 no. 3 Pt 1
(March, 2006),
pp. 031912 [16605563], [doi] [abs]
.
 J.E.S. Socolar, Nonlinear Dynamical Systems,
in Complex Systems Science and Biomedicine, edited by Deisboeck and Kresh
(February, 2006), Kluwer .
 B. Samuelsson and J.E.S. Socolar, Exhaustive percolation on random networks,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 74 no. 3
(2006),
pp. 031912 [e036113], [doi] [abs]
.
 B.P. Tighe, J.E.S. Socolar, D.G. Schaeffer, W.G. Mitchener, and M.L. Huber, Force distributions in a triangular lattice of rigid bars.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 72 no. 3 Pt 1
(September, 2005),
pp. 031306 [16241425], [doi] [abs]
.
 S. Dealy, S.A. Kauffman and J.E.S. Socolar, Modeling pathways of differentiation in genetic regulatory networks with Boolean networks,
Complexity, vol. 11 no. 1
(2005),
pp. 5260 [doi] [abs]
.
 I. Harrington and J.E.S Socolar, Design and robustness of delayed feedback controllers for discrete systems,
Phys. Rev. E, vol. 69 no. 5 1
(2004),
pp. 56207 [abs]
.
 J.E.S. Socolar, Discrete models of force chain networks,
Discrete and Continuous Dynamical Systems  Series B, vol. 3 no. 4
(November, 2003),
pp. 601618 [0212162] [abs]
.
 P. Hoevel and J.E.S. Socolar, Stability domains for timedelay feedback control with latency.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 68 no. 3 Pt 2
(September, 2003),
pp. 036206 [14524867], [doi] [abs]
.
 M. Otto, J.P. Bouchaud, P. Claudin, and J.E.S. Socolar, Anisotropy in granular media: Classical elasticity and directedforce chain network,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 67 no. 3 1
(March, 2003),
pp. 031302/1031302/24 [12689059], [doi] [abs]
.
 J.E.S. Socolar and S.A. Kauffman, Scaling in ordered and critical random boolean networks.,
Phys Rev Lett, vol. 90 no. 6
(February, 2003),
pp. 068702 [12633339], [doi] [abs]
.
 O. Beck, A. Amann, E. Schoell, and J.E.S. Socolar, `Comparison of timedelayed feedback schemes for spatiotemporal control of chaos,
Phys. Rev. E, vol. 66 no. 1
(December, 2002),
pp. 016213 [doi] [abs]
.
 J.E.S. Socolar, P. Claudin, and D.G. Schaeffer, Directed force chain networks and stress response in static granular materials,
European Physical Journal E, vol. 7 no. 4
(December, 2002),
pp. 353370 [0201242] [abs]
.
 JES Socolar, DG Schaeffer and P Claudin, Erratum: Directed force chain networks and stress response in static granular materials (The European Physical Journal E (2002) 7 (353370)),
European Physical Journal E, vol. 8 no. 4
(2002),
pp. 453 .
 I. Harrington and J.E.S. Socolar, Limitation on stabilizing plane waves via timedelay feedback.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 64 no. 5 Pt 2
(November, 2001),
pp. 056206 [11736053], [doi] [abs]
.
 J.E.S Socolar, Chaos,
in Encyclopedia of Physical Science and Technology, 3rd Edition, edited by R. Meyers
(2001), Academic Press(revision of article by R. Jensen.)
.
 J.E.S. Socolar, S. Richards, and W. Wilson, Evolution in a spatially structured population subject to rare epidemics,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 63 no. 4 I
(2001),
pp. 419081419088 [abs]
.
 M. Bleich and J.E.S. Socolar, Delayed feedback control of a paced excitable oscillator,
International Journal of Bifurcation and Chaos in Applied Sciences and Engineering, vol. 10 no. 3
(2000),
pp. 603609 [abs]
.
 S. Richards, W. Wilson, and J.E.S. Socolar, Selection for intermediate mortality and reproduction rates in a spatially structured population.,
Proc Biol Sci, vol. 266 no. 1436
(December, 1999),
pp. 23832388 [10643082], [doi] [abs]
.
 M. Sexton, J.E.S. Socolar, and D.G. Schaeffer, Force distribution in a scalar model for noncohesive granular material.,
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 60 no. 2 Pt B
(August, 1999),
pp. 19992008 [11969992] [abs]
.
 J.E.S. Socolar, Average stresses and force fluctuations in noncohesive granular materials,
Phys. Rev. E, vol. 57
(1998),
pp. 3204 [9710089] .
 D.A. Egolf and J.E.S. Socolar, Failure of linear control in noisy coupled map lattices,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 57 no. 5 SUPPL. A
(1998),
pp. 52715275 [abs]
.
 J.E.S. Socolar and D.J. Gauthier, Analysis and comparison of multipledelay schemes for controlling unstable fixed points of discrete maps,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 57 no. 6
(1998),
pp. 65896595 [abs]
.
 D.W. Sukow, M.E. Bleich, D.J. Gauthier, and J.E.S. Socolar, Controlling chaos in a fast diode resonator using extended timedelay autosynchronization: Experimental observations and theoretical analysis.,
Chaos, vol. 7 no. 4
(December, 1997),
pp. 560576 [12779682], [doi] [abs]
.
 M.E. Bleich, D. Hochheiser, J.V. Moloney, and J.E.S. Socolar, Controlling extended systems with spatially filtered, timedelayed feedback,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 55 no. 3 SUPPL. A
(1997),
pp. 21192126 [abs]
.
 D.J. Gauthier and J.E.S Socolar, Comment on Dynamic Control of Cardiac Alternans,
Physical Review Letters, vol. 79
(1997),
pp. 4938 .
 M.E. Bleich and J.E.S. Socolar, Controlling spatiotemporal dynamics with timedelay feedback.,
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 54 no. 1
(July, 1996),
pp. R17R20 [9965164] .
 M.E. Bleich and J.E.S. Socolar, Stability of periodic orbits controlled by timedelay feedback,
Physics Letters, Section A: General, Atomic and Solid State Physics, vol. 210 no. 12
(1996),
pp. 8794 [abs]
.
 J.E.S. Socolar, D.W. Sukow, and D.J. Gauthier, Stabilizing unstable periodic orbits in fast dynamical systems.,
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 50 no. 4
(October, 1994),
pp. 32453248 [9962372] .
 D.J. Gauthier, D.W. Sukow, H.M. Concannon, and J.E.S. Socolar, Stabilizing unstable periodic orbits in a fast diode resonator using continuous timedelay autosynchronization.,
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 50 no. 3
(September, 1994),
pp. 23432346 [9962244] .
 G. Grinstein, C. Jayaprakash and J.E.S. Socolar, Scale invariance of nonconserved quantities in driven systems.,
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 48 no. 2
(August, 1993),
pp. R643R646 [9960763] .
 J.E.S. Socolar, G. Grinstein and C. Jayaprakash, On selforganized criticality in nonconserving systems.,
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 47 no. 4
(April, 1993),
pp. 23662376 [9960267] .
 J. Krug, J.E.S. Socolar, and G. Grinstein, Surface Fluctuations and Criticality in a Class of 1D Sandpile Models,
Phys. Rev. A (RC), vol. 46 no. 8
(October, 1992),
pp. 4479 [9908766] .
 J. Krug and J.E.S. Socolar, Comment on "Scalings of growing selforganized surfaces",
Phys Rev Lett, vol. 68 no. 5
(February, 1992),
pp. 722 [10045973], [doi] .
 J.E.S. Socolar, Theory of Packings of Identical Hard Disks Generated by Ballistic Deposition,
Europhys. Lett., vol. 18
(1992),
pp. 39 .
 J.E.S. Socolar, Growth Rules for Quasicrystals,
in Quasicrystals: The State of the Art, edited by D. DiVincenzo and P. Steinhardt
(1991), World Scientific, Singapore .
 J.E.S. Socolar, The Alternation Condition and 2D Quasicrystals,
in Quasicrystals, Springer Series in SolidState Sciences, edited by T. Fujiwara and T. Ogawa, vol. 93
(1990), SpringerVerlag, Berlin .
 J.E.S. Socolar, Weak matching rules for quasicrystals,
Communications in Mathematical Physics, vol. 129 no. 3
(1990),
pp. 599619 [doi] [abs]
.
 J.E.S. Socolar, Simple octagonal and dodecagonal quasicrystals.,
Phys Rev B Condens Matter, vol. 39 no. 15
(May, 1989),
pp. 1051910551 [9947860] .
 G.Y. Onoda, P.J. Steinhardt, D.P. DiVincenzo, and J.E.S. Socolar, Reply to Comment on PRL,
Phys. Rev. Lett., vol. 62 no. 10
(March, 1989),
pp. 1210 [10039608], [doi] .
 J.E.S. Socolar, Locality Constraints and 2D Quasicrystals,
in Quasicrystals  Adriatico Anniversary Research Conference, edited by M.V. Jaric and S. Lundqvist
(1989), World Scientific, Singapore .
 G.Y. Onoda, P.J. Steinhardt, D.P. DiVincenzo, and J.E.S. Socolar, Growing perfect quasicrystals.,
Phys Rev Lett, vol. 60 no. 25
(June, 1988),
pp. 26532656 [10038414], [doi] .
 J.E.S. Socolar and D.C. Wright, Explanation of peak shapes observed in diffraction from icosahedral quasicrystals.,
Phys Rev Lett, vol. 59 no. 2
(July, 1987),
pp. 221224 [10035483], [doi] .
 T.C. Lubensky, J.E.S. Socolar, P.J. Steinhardt, P.A. Bancel, and P.A. Heiney, Distortion and peak broadening in quasicrystal diffraction patterns.,
Phys Rev Lett, vol. 57 no. 12
(September, 1986),
pp. 14401443 [10033450], [doi] .
 J.E.S. Socolar, T.C. Lubensky, and P.J. Steinhardt, Phonons, phasons, and dislocations in quasicrystals.,
Phys Rev B Condens Matter, vol. 34 no. 5
(September, 1986),
pp. 33453360 [9940073] .
 JE Socolar and PJ Steinhardt, Quasicrystals. II. Unitcell configurations.,
Phys Rev B Condens Matter, vol. 34 no. 2
(July, 1986),
pp. 617647 [9939668] .
 J.E.S. Socolar and P.J. Steinhardt, Quasicrystals II: Unit Cell Structures,
Phys. Rev. B, vol. 34
(1986),
pp. 617647 [doi] .
 J.E.S. Socolar, Phason Strain in Quasicrystals,
Journal de Physique, vol. C3
(1986),
pp. 217227 .
 J.E.S. Socolar, P.J. Steinhardt, and D. Levine, Quasicrystals with arbitrary orientational symmetry., Rapid Communication,
Phys Rev B Condens Matter, vol. 32 no. 8
(October, 1985),
pp. 55475550 [9937798] .
 E.J. Mele and J. Socolar, NUMERICALINTEGRATION OF THE TIME EVOLUTION OPERATOR  EXCITEDSTATE DYNAMICS IN CONJUGATED MOLECULES, Quantum Chemistry Symposium,
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, vol. 18
(1984),
pp. 347358 [Gateway.cgi] .
 J.P. Gollub, E.J. Romer and J.E. Socolar, Trajectory divergence for coupled relaxation oscillators: Measurements and models,
Journal of Statistical Physics, vol. 23 no. 3
(1980),
pp. 321333 [doi] [abs]
.

Papers Submitted

 Y. Yang, L. Fu, C. Marcoux, J. E. S. Socolar, P. Charbonneau, B. B. Yellen, Martensitic transformations in binary colloidal monolayers,
PNAS
(October, 2014) .