Publications of Joshua Socolar

Papers Published

  1. Oğuz, EC; Socolar, JES; Steinhardt, PJ; Torquato, S, Hyperuniformity and anti-hyperuniformity in one-dimensional substitution tilings., Acta Crystallographica. Section A, Foundations and Advances, vol. 75 no. Pt 1 (January, 2019), pp. 3-13
  2. Pham, AT; Zhuang, Y; Detwiler, P; Socolar, JES; Charbonneau, P; Yellen, BB, Phase diagram and aggregation dynamics of a monolayer of paramagnetic colloids., Physical Review. E, vol. 95 no. 5-1 (May, 2017), pp. 052607
  3. Oǧuz, EC; Socolar, JES; Steinhardt, PJ; Torquato, S, Hyperuniformity of quasicrystals, Physical Review B, vol. 95 no. 5 (February, 2017), American Physical Society (APS)
  4. Socolar, JES; Lubensky, TC; Kane, CL, Mechanical graphene, New Journal of Physics, vol. 19 no. 2 (February, 2017), pp. 025003-025003, IOP Publishing
  5. Rutkowski, DM; Marcoux, C; Socolar, JES; Hall, CK, Formation of limit-periodic structures by quadrupole particles confined to a triangular lattice, Physical Review. E, vol. 95 no. 1 (January, 2017), American Physical Society (APS)
  6. Hann, CT; Socolar, JES; Steinhardt, PJ, Local growth of icosahedral quasicrystalline tilings, Physical Review B, vol. 94 no. 1 (July, 2016), American Physical Society (APS)
  7. Marcoux, C; Socolar, JES, Sparse phonon modes of a limit-periodic structure, Physical Review. B, Condensed Matter, vol. 93 no. 17 (May, 2016), American Physical Society, ISSN 0163-1829
  8. Fu, L; Steinhardt, W; Zhao, H; Socolar, JES; Charbonneau, P, Hard sphere packings within cylinders., Soft Matter, vol. 12 no. 9 (March, 2016), pp. 2505-2514, ISSN 1744-683X
  9. Marcoux, C; Byington, TW; Qian, Z; Charbonneau, P; Socolar, JES, Erratum: Emergence of limit-periodic order in tiling models (Physical Review E - Statistical, Nonlinear, and Soft Matter Physics (2014) 90 (012136)), Physical Review. E, vol. 93 no. 2 (February, 2016), American Physical Society (APS), ISSN 2470-0045
  10. Yang, Y; Fu, L; Marcoux, C; Socolar, JES; Charbonneau, P; Yellen, BB, Phase transformations in binary colloidal monolayers., Soft Matter, vol. 11 no. 12 (March, 2015), pp. 2404-2415, ISSN 1744-683X
  11. Sun, M; Cheng, X; Socolar, JES, Regulatory logic and pattern formation in the early sea urchin embryo., Journal of Theoretical Biology, vol. 363 (December, 2014), pp. 80-92, ISSN 0022-5193
  12. Marcoux, C; Byington, TW; Qian, Z; Charbonneau, P; Socolar, JES, Emergence of limit-periodic order in tiling models., Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 90 no. 1 (July, 2014), pp. 012136, American Physical Society, ISSN 1539-3755
  13. Cheng, X; Lyons, DC; Socolar, JES; McClay, DR, Delayed transition to new cell fates during cellular reprogramming., Developmental Biology, vol. 391 no. 2 (April, 2014), pp. 147-157, ISSN 0012-1606
  14. Sun, M; Cheng, X; Socolar, JES, Causal structure of oscillations in gene regulatory networks: Boolean analysis of ordinary differential equation attractors., Chaos, vol. 23 no. 2 (June, 2013), pp. 025104
  15. Cheng, X; Sun, M; Socolar, JES, Autonomous Boolean modelling of developmental gene regulatory networks, Journal of the Royal Society, Interface, vol. 10 no. 78 (January, 2013), pp. 20120574
  16. Cheng, X; Sun, M; Socolar, JES, Autonomous Boolean modelling of developmental gene regulatory networks., Journal of the Royal Society, Interface, vol. 10 no. 78 (January, 2013), pp. 20120574
  17. Byington, T; Socolar, JES, Hierarchical freezing of limit-periodic structure, Physical Review E (November, 2012)
  18. Gong, X; Socolar, JES, Quantifying the complexity of random Boolean networks., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 85 no. 6 Pt 2 (2012), pp. 066107
  19. Durrett, R; Gleeson, JP; Lloyd, AL; Mucha, PJ; Shi, F; Sivakoff, D; Socolar, JES; Varghese, C, Graph fission in an evolving voter model., Proc Natl Acad Sci U S A, vol. 109 no. 10 (2012), pp. 3682-3687
  20. Socolar, JES; Taylor, JM, Forcing Nonperiodicity with a Single Tile, The Mathematical Intelligencer, vol. 34 no. 1 (Spring, 2012), pp. 18-28, Springer Nature, ISSN 0343-6993
  21. Byington, TW; Socolar, JES, Hierarchical freezing in a lattice model., Phys Rev Lett, vol. 108 no. 4 (January, 2012), pp. 045701
  22. Khalil, KS; Sagastegui, A; Li, Y; Tahir, MA; Socolar, JES; Wiley, BJ; Yellen, BB, Binary colloidal structures assembled through Ising interactions., Nature Communications, vol. 3 (January, 2012), pp. 794
  23. Sun, M; Socolar, JES, Comparison of autonomous Boolean network dynamics and ODE models, Chaos (2012)
  24. Socolar, JES, Local action, global impact: forcing nonperiodicity with a single structural unit., Chaos, vol. 21 no. 4 (December, 2011), pp. 041106
  25. Socolar, JES; Taylor, JM, An aperiodic hexagonal tile, Journal of Combinatorial Theory, Series A, vol. 118 no. 8 (November, 2011), pp. 2207-2231, Elsevier BV, Orlando, FL, USA, ISSN 0097-3165
  26. Cavalcante, HLDDS; Gauthier, DJ; Socolar, JES; Zhang, R, On the origin of chaos in autonomous Boolean networks., Philosophical Transactions. Series A, Mathematical, Physical, and Engineering Sciences, vol. 368 no. 1911 (January, 2010), pp. 495-513, ISSN 1364-503X
  27. Sevim, V; Gong, X; Socolar, JES, Reliability of transcriptional cycles and the yeast cell-cycle oscillator., Plos Computational Biology, vol. 6 no. 7 (2010), pp. e1000842, ISSN 1553-7358
  28. Zhang, R; de S Cavalcante, HLD; Gao, Z; Gauthier, DJ; Socolar, JES; Adams, MM; Lathrop, DP, Boolean chaos., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 80 no. 4 Pt 2 (October, 2009), pp. 045202
  29. Norrell, J; Socolar, JE, Boolean modeling of collective effects in complex networks., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 79 no. 6 (2009), pp. nihpa131303
  30. Orlando, DA; Lin, CY; Bernard, A; Wang, JY; Socolar, JES; Iversen, ES; Hartemink, AJ; Haase, SB, Global control of cell-cycle transcription by coupled CDK and network oscillators., Nature, vol. 453 no. 7197 (June, 2008), pp. 944-947
  31. Socolar, JES, Time-Delay Control for Discrete Maps (May, 2008), pp. 29-45, Wiley-VCH Verlag GmbH & Co. KGaA
  32. D.A. Orlando, C.Y. Lin, A. Bernard, J.Y. Wang, J.E.S. Socolar, E.S. Iversen, A.J. Hartemink, and S.B. Haase, Global control of cell-cycle transcription by coupled CDK and network oscillators, Nature (May 7, 2008)
  33. Tighe, BP; Socolar, JES, Nonlinear elastic stress response in granular packings., Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 77 no. 3 Pt 1 (March, 2008), pp. 031303, ISSN 1539-3755
  34. Ribeiro, AS; Kauffman, SA; Lloyd-Price, J; Samuelsson, B; Socolar, JES, Mutual information in random Boolean models of regulatory networks., Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 77 no. 1 Pt 1 (2008), pp. 011901, ISSN 1539-3755
  35. J.E.S. Socolar, Time-delay control for discrete maps, in Handbook of Chaos Control, edited by E. Scholl and H. G. Schuster (December, 2007), Wiley-VCH Verlag GmbH
  36. Norrell, J; Samuelsson, B; Socolar, JES, Attractors in continuous and Boolean networks., Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 76 no. 4 Pt 2 (October, 2007), pp. 046122, ISSN 1539-3755
  37. Berger, CM; Cain, JW; Socolar, JES; Gauthier, DJ, Control of electrical alternans in simulations of paced myocardium using extended time-delay autosynchronization., Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 76 no. 4 Pt 1 (October, 2007), pp. 041917, ISSN 1539-3755 (Selected for Virtual Journal of Biological Physics Research.)
  38. Socolar, JES, Erratum: The hexagonal parquet tiling, k-isohedral monotiles with arbitrarily large k (The Mathematical Intelligencer 29:2 (33-38)), The Mathematical Intelligencer, vol. 29 no. 4 (September, 2007), pp. 6, Springer Nature, ISSN 0343-6993
  39. Shreim, A; Grassberger, P; Nadler, W; Samuelsson, B; Socolar, JES; Paczuski, M, Network analysis of the state space of discrete dynamical systems., Physical Review Letters, vol. 98 no. 19 (May, 2007), pp. 198701, ISSN 0031-9007
  40. Socolar, JES, The hexagonal parquet tiling k-isohedral monotiles with arbitrarily large k, The Mathematical Intelligencer, vol. 29 no. 2 (March, 2007), pp. 33-38, Springer Nature, ISSN 0343-6993
  41. Samuelsson, B; Socolar, JES, Exhaustive percolation on random networks, Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 74 no. 3 (October, 2006), pp. 031912, American Physical Society (APS), ISSN 1539-3755
  42. Foster, DV; Kauffman, SA; Socolar, JES, Network growth models and genetic regulatory networks., Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 73 no. 3 Pt 1 (2006), pp. 031912, ISSN 1539-3755
  43. J.E.S. Socolar, Nonlinear Dynamical Systems, in Complex Systems Science and Biomedicine, edited by Deisboeck and Kresh (February, 2006), Kluwer
  44. Dealy, S; Kauffman, S; Socolar, J, Modeling pathways of differentiation in genetic regulatory networks with Boolean networks, Complexity, vol. 11 no. 1 (September, 2005), pp. 52-60, WILEY, ISSN 1076-2787
  45. Tighe, BP; Socolar, JES; Schaeffer, DG; Mitchener, WG; Huber, ML, Force distributions in a triangular lattice of rigid bars., Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 72 no. 3 Pt 1 (September, 2005), pp. 031306, ISSN 1539-3755
  46. Harrington, I; Socolar, JES, Design and robustness of delayed feedback controllers for discrete systems, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 69 no. 5 (2004), pp. 8, ISSN 1539-3755
  47. Hövel, P; Socolar, JES, Stability domains for time-delay feedback control with latency., Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 68 no. 3 Pt 2 (2003), pp. 036206, ISSN 1539-3755
  48. Socolar, JES; Kauffman, SA, Scaling in ordered and critical random boolean networks., Physical Review Letters, vol. 90 no. 6 (February, 2003), pp. 068702, ISSN 0031-9007
  49. Socolar, JES, Discrete models of force chain networks, Discrete and Continuous Dynamical Systems Series B, vol. 3 no. 4 (January, 2003), pp. 601-618, American Institute of Mathematical Sciences (AIMS), ISSN 1531-3492
  50. Hövel, P; Socolar, JES, Stability domains for time-delay feedback control with latency, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 68 no. 3 2 (2003), pp. 362061-362067
  51. Otto, M; Bouchaud, J-P; Claudin, P; Socolar, JES, Anisotropy in granular media: Classical elasticity and directed-force chain network, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 67 no. 3 1 (2003), pp. 031302/1-031302/24, ISSN 1063-651X
  52. Beck, O; Amann, A; Schöll, E; Socolar, JES; Just, W, Comparison of time-delayed feedback schemes for spatiotemporal control of chaos in a reaction-diffusion system with global coupling, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 66 no. 1 (July, 2002), pp. 016213/1-016213/6, American Physical Society (APS), ISSN 1539-3755
  53. Socolar, JES; Schaeffer, DG; Claudin, P, Erratum to: Directed force chain networks and stress response in static granular materials, The European Physical Journal. E, Soft Matter, vol. 8 no. 4 (July, 2002), pp. 453-453, Springer Nature
  54. Socolar, JES; Schaeffer, DG; Claudin, P, Directed force chain networks and stress response in static granular materials, European Physical Journal E, vol. 7 no. 4 (2002), pp. 353-370
  55. Harrington, I; Socolar, JE, Limitation on stabilizing plane waves via time-delay feedback., Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 64 no. 5 Pt 2 (November, 2001), pp. 056206, ISSN 1539-3755
  56. Socolar, JES, Evolution in a spatially structured population subject to rare epidemics, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 63 no. 4 (January, 2001), pp. 419081-419088
  57. J.E.S Socolar, Chaos, in Encyclopedia of Physical Science and Technology, 3rd Edition, edited by R. Meyers (2001), Academic Press (revision of article by R. Jensen.)
  58. BLEICH, MICHAELE; SOCOLAR, JOSHUAES, DELAYED FEEDBACK CONTROL OF A PACED EXCITABLE OSCILLATOR, International Journal of Bifurcation and Chaos, vol. 10 no. 03 (2000), pp. 603-609, World Scientific Pub Co Pte Lt
  59. Richards, SA; Wilson, WG; Socolar, JE, Selection for intermediate mortality and reproduction rates in a spatially structured population., Proceedings of the Royal Society B: Biological Sciences, vol. 266 no. 1436 (December, 1999), pp. 2383-2388, ISSN 0962-8452
  60. Sexton, MG; Socolar, JE; Schaeffer, DG, Force distribution in a scalar model for noncohesive granular material., Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 60 no. 2 Pt B (August, 1999), pp. 1999-2008, ISSN 1063-651X
  61. Socolar, JES, Average stresses and force fluctuations in noncohesive granular materials, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 57 no. 3 (March, 1998), pp. 3204-3215, AMERICAN PHYSICAL SOC
  62. Egolf, DA; Socolar, JES, Failure of linear control in noisy coupled map lattices, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 57 no. 5 (January, 1998), pp. 5271-5275, American Physical Society (APS)
  63. Socolar, JES; Gauthier, DJ, Analysis and comparison of multiple-delay schemes for controlling unstable fixed points of discrete maps, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 57 no. 6 (1998), pp. 6589-6595, American Physical Society (APS)
  64. Gauthier, DJ; Socolar, JES, Comment on “Dynamic Control of Cardiac Alternans”, Physical Review Letters, vol. 79 no. 24 (December, 1997), pp. 4938, American Physical Society (APS)
  65. Sukow, DW; Bleich, ME; Gauthier, DJ; Socolar, JES, Controlling chaos in a fast diode resonator using extended time-delay autosynchronization: Experimental observations and theoretical analysis., Chaos, vol. 7 no. 4 (1997), pp. 560-576
  66. Bleich, ME; Hochheiser, D; Moloney, JV; Socolar, JES, Controlling extended systems with spatially filtered, time-delayed feedback, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 55 no. 3 (1997), pp. 2119-2126, American Physical Society (APS)
  67. Bleich, ME; Socolar, JES, Controlling spatiotemporal dynamics with time-delay feedback, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 54 no. 1 (1996), pp. R17-R20, American Physical Society (APS), ISSN 1063-651X
  68. Bleich, ME; Socolar, JES, Stability of periodic orbits controlled by time-delay feedback, Physics Letters A, vol. 210 no. 1-2 (1995), pp. 87-94, Elsevier BV
  69. Socolar, JE; Sukow, DW; Gauthier, DJ, Stabilizing unstable periodic orbits in fast dynamical systems., Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 50 no. 4 (1994), pp. 3245-3248, ISSN 1063-651X
  70. Gauthier, DJ; Sukow, DW; Concannon, HM; Socolar, JE, Stabilizing unstable periodic orbits in a fast diode resonator using continuous time-delay autosynchronization., Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 50 no. 3 (1994), pp. 2343-2346, ISSN 1063-651X
  71. Grinstein, G; Jayaprakash, C; Socolar, JE, Scale invariance of nonconserved quantities in driven systems., Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 48 no. 2 (1993), pp. R643-R646, ISSN 1063-651X
  72. SOCOLAR, JES; GRINSTEIN, G; JAYAPRAKASH, C, ON SELF-ORGANIZED CRITICALITY IN NONCONSERVING SYSTEMS, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 47 no. 4 (1993), pp. 2366-2376, AMERICAN PHYSICAL SOC, ISSN 1063-651X
  73. Krug, J; Socolar, JE; Grinstein, G, Surface fluctuations and criticality in a class of one-dimensional sandpile models., Physical Review A, vol. 46 no. 8 (October, 1992), pp. R4479-R4482, ISSN 1050-2947
  74. Socolar, JES, Theory of Packings of Identical Hard Disks Generated by Ballistic Deposition, Epl (Europhysics Letters), vol. 18 no. 1 (1992), pp. 39-44, IOP Publishing
  75. Krug, J; Socolar, JE, Comment on "Scalings of growing self-organized surfaces", Phys Rev Lett, vol. 68 no. 5 (1992), pp. 722
  76. J.E.S. Socolar, Growth Rules for Quasicrystals, in Quasicrystals: The State of the Art, edited by D. DiVincenzo and P. Steinhardt (1991), World Scientific, Singapore
  77. Socolar, JES, Weak matching rules for quasicrystals, Communications in Mathematical Physics, vol. 129 no. 3 (1990), pp. 599-619, Springer Nature, ISSN 0010-3616
  78. J.E.S. Socolar, The Alternation Condition and 2D Quasicrystals, in Quasicrystals, Springer Series in Solid-State Sciences, edited by T. Fujiwara and T. Ogawa, vol. 93 (1990), Springer-Verlag, Berlin
  79. Socolar, JE, Simple octagonal and dodecagonal quasicrystals., Physical Review. B, Condensed Matter, vol. 39 no. 15 (1989), pp. 10519-10551, ISSN 0163-1829
  80. Onoda, G; Steinhardt, PJ; DiVincenzo, D; Socolar, JE, Onoda etal. reply., Phys Rev Lett, vol. 62 no. 10 (March, 1989), pp. 1210
  81. J.E.S. Socolar, Locality Constraints and 2D Quasicrystals, in Quasicrystals - Adriatico Anniversary Research Conference, edited by M.V. Jaric and S. Lundqvist (1989), World Scientific, Singapore
  82. Onoda, GY; Steinhardt, PJ; DiVincenzo, DP; Socolar, JE, Growing perfect quasicrystals., Phys Rev Lett, vol. 60 no. 25 (1988), pp. 2653-2656
  83. Socolar, JE; Wright, DC, Explanation of peak shapes observed in diffraction from icosahedral quasicrystals., Phys Rev Lett, vol. 59 no. 2 (1987), pp. 221-224
  84. Lubensky, TC; Socolar, JE; Steinhardt, PJ; Bancel, PA; Heiney, AP, Distortion and peak broadening in quasicrystal diffraction patterns., Phys Rev Lett, vol. 57 no. 12 (1986), pp. 1440-1443
  85. Socolar, JE; Lubensky, TC; Steinhardt, PJ, Phonons, phasons, and dislocations in quasicrystals., Physical Review. B, Condensed Matter, vol. 34 no. 5 (1986), pp. 3345-3360, ISSN 0163-1829
  86. Socolar, JE; Steinhardt, PJ, Quasicrystals. II. Unit-cell configurations., Physical Review. B, Condensed Matter, vol. 34 no. 2 (July, 1986), pp. 617-647, ISSN 0163-1829
  87. Socolar, JES, Phason Strain in Quasicrystals, Journal de Physique, vol. C3 (1986), pp. 217-227
  88. Socolar, JE; Steinhardt, PJ; Levine, D, Quasicrystals with arbitrary orientational symmetry., Rapid Communication, Physical Review. B, Condensed Matter, vol. 32 no. 8 (1985), pp. 5547-5550, ISSN 0163-1829
  89. Mele, EJ; Socolar, J, Numerical integration of the time evolution operator: Excited‐state dynamics in conjugated molecules, Quantum Chemistry Symposium, International Journal of Quantum Chemistry, vol. 26 no. 18 S (1984), pp. 347-358, WILEY, ISSN 0020-7608
  90. Gollub, JP; Romer, EJ; Socolar, JE, Trajectory divergence for coupled relaxation oscillators: Measurements and models, Journal of Statistical Physics, vol. 23 no. 3 (1980), pp. 321-333, Springer Nature, ISSN 0022-4715

Papers Submitted

  1. Y. Yang, L. Fu, C. Marcoux, J. E. S. Socolar, P. Charbonneau, B. B. Yellen, Martensitic transformations in binary colloidal monolayers, PNAS (October, 2014)