**Papers Published**

- Oğuz, EC; Socolar, JES; Steinhardt, PJ; Torquato, S,
*Hyperuniformity and anti-hyperuniformity in one-dimensional substitution tilings.*, Acta Crystallographica. Section A, Foundations and Advances, vol. 75 no. Pt 1 (January, 2019), pp. 3-13 - Pham, AT; Zhuang, Y; Detwiler, P; Socolar, JES; Charbonneau, P; Yellen, BB,
*Phase diagram and aggregation dynamics of a monolayer of paramagnetic colloids.*, Physical Review. E, vol. 95 no. 5-1 (May, 2017), pp. 052607 - Oǧuz, EC; Socolar, JES; Steinhardt, PJ; Torquato, S,
*Hyperuniformity of quasicrystals*, Physical Review B, vol. 95 no. 5 (February, 2017), American Physical Society (APS) - Socolar, JES; Lubensky, TC; Kane, CL,
*Mechanical graphene*, New Journal of Physics, vol. 19 no. 2 (February, 2017), pp. 025003-025003, IOP Publishing - Rutkowski, DM; Marcoux, C; Socolar, JES; Hall, CK,
*Formation of limit-periodic structures by quadrupole particles confined to a triangular lattice*, Physical Review. E, vol. 95 no. 1 (January, 2017), American Physical Society (APS) - Hann, CT; Socolar, JES; Steinhardt, PJ,
*Local growth of icosahedral quasicrystalline tilings*, Physical Review B, vol. 94 no. 1 (July, 2016), American Physical Society (APS) - Marcoux, C; Socolar, JES,
*Sparse phonon modes of a limit-periodic structure*, Physical Review. B, Condensed Matter, vol. 93 no. 17 (May, 2016), American Physical Society, ISSN 0163-1829 - Fu, L; Steinhardt, W; Zhao, H; Socolar, JES; Charbonneau, P,
*Hard sphere packings within cylinders.*, Soft Matter, vol. 12 no. 9 (March, 2016), pp. 2505-2514, ISSN 1744-683X - Marcoux, C; Byington, TW; Qian, Z; Charbonneau, P; Socolar, JES,
*Erratum: Emergence of limit-periodic order in tiling models (Physical Review E - Statistical, Nonlinear, and Soft Matter Physics (2014) 90 (012136))*, Physical Review. E, vol. 93 no. 2 (February, 2016), American Physical Society (APS), ISSN 2470-0045 - Yang, Y; Fu, L; Marcoux, C; Socolar, JES; Charbonneau, P; Yellen, BB,
*Phase transformations in binary colloidal monolayers.*, Soft Matter, vol. 11 no. 12 (March, 2015), pp. 2404-2415, ISSN 1744-683X - Sun, M; Cheng, X; Socolar, JES,
*Regulatory logic and pattern formation in the early sea urchin embryo.*, Journal of Theoretical Biology, vol. 363 (December, 2014), pp. 80-92, ISSN 0022-5193 - Marcoux, C; Byington, TW; Qian, Z; Charbonneau, P; Socolar, JES,
*Emergence of limit-periodic order in tiling models.*, Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 90 no. 1 (July, 2014), pp. 012136, American Physical Society, ISSN 1539-3755 - Cheng, X; Lyons, DC; Socolar, JES; McClay, DR,
*Delayed transition to new cell fates during cellular reprogramming.*, Developmental Biology, vol. 391 no. 2 (April, 2014), pp. 147-157, ISSN 0012-1606 - Sun, M; Cheng, X; Socolar, JES,
*Causal structure of oscillations in gene regulatory networks: Boolean analysis of ordinary differential equation attractors.*, Chaos, vol. 23 no. 2 (June, 2013), pp. 025104 - Cheng, X; Sun, M; Socolar, JES,
*Autonomous Boolean modelling of developmental gene regulatory networks*, Journal of the Royal Society, Interface, vol. 10 no. 78 (January, 2013), pp. 20120574 - Cheng, X; Sun, M; Socolar, JES,
*Autonomous Boolean modelling of developmental gene regulatory networks.*, Journal of the Royal Society, Interface, vol. 10 no. 78 (January, 2013), pp. 20120574 - Byington, T; Socolar, JES,
*Hierarchical freezing of limit-periodic structure*, Physical Review E (November, 2012) - Gong, X; Socolar, JES,
*Quantifying the complexity of random Boolean networks.*, Phys Rev E Stat Nonlin Soft Matter Phys, vol. 85 no. 6 Pt 2 (2012), pp. 066107 - Durrett, R; Gleeson, JP; Lloyd, AL; Mucha, PJ; Shi, F; Sivakoff, D; Socolar, JES; Varghese, C,
*Graph fission in an evolving voter model.*, Proc Natl Acad Sci U S A, vol. 109 no. 10 (2012), pp. 3682-3687 - Socolar, JES; Taylor, JM,
*Forcing Nonperiodicity with a Single Tile*, The Mathematical Intelligencer, vol. 34 no. 1 (Spring, 2012), pp. 18-28, Springer Nature, ISSN 0343-6993 - Byington, TW; Socolar, JES,
*Hierarchical freezing in a lattice model.*, Phys Rev Lett, vol. 108 no. 4 (January, 2012), pp. 045701 - Khalil, KS; Sagastegui, A; Li, Y; Tahir, MA; Socolar, JES; Wiley, BJ; Yellen, BB,
*Binary colloidal structures assembled through Ising interactions.*, Nature Communications, vol. 3 (January, 2012), pp. 794 - Sun, M; Socolar, JES,
*Comparison of autonomous Boolean network dynamics and ODE models*, Chaos (2012) - Socolar, JES,
*Local action, global impact: forcing nonperiodicity with a single structural unit.*, Chaos, vol. 21 no. 4 (December, 2011), pp. 041106 - Socolar, JES; Taylor, JM,
*An aperiodic hexagonal tile*, Journal of Combinatorial Theory, Series A, vol. 118 no. 8 (November, 2011), pp. 2207-2231, Elsevier BV, Orlando, FL, USA, ISSN 0097-3165 - Cavalcante, HLDDS; Gauthier, DJ; Socolar, JES; Zhang, R,
*On the origin of chaos in autonomous Boolean networks.*, Philosophical Transactions. Series A, Mathematical, Physical, and Engineering Sciences, vol. 368 no. 1911 (January, 2010), pp. 495-513, ISSN 1364-503X - Sevim, V; Gong, X; Socolar, JES,
*Reliability of transcriptional cycles and the yeast cell-cycle oscillator.*, Plos Computational Biology, vol. 6 no. 7 (2010), pp. e1000842, ISSN 1553-7358 - Zhang, R; de S Cavalcante, HLD; Gao, Z; Gauthier, DJ; Socolar, JES; Adams, MM; Lathrop, DP,
*Boolean chaos.*, Phys Rev E Stat Nonlin Soft Matter Phys, vol. 80 no. 4 Pt 2 (October, 2009), pp. 045202 - Norrell, J; Socolar, JE,
*Boolean modeling of collective effects in complex networks.*, Phys Rev E Stat Nonlin Soft Matter Phys, vol. 79 no. 6 (2009), pp. nihpa131303 - Orlando, DA; Lin, CY; Bernard, A; Wang, JY; Socolar, JES; Iversen, ES; Hartemink, AJ; Haase, SB,
*Global control of cell-cycle transcription by coupled CDK and network oscillators.*, Nature, vol. 453 no. 7197 (June, 2008), pp. 944-947 - Socolar, JES,
*Time-Delay Control for Discrete Maps*(May, 2008), pp. 29-45, Wiley-VCH Verlag GmbH & Co. KGaA - D.A. Orlando, C.Y. Lin, A. Bernard, J.Y. Wang, J.E.S. Socolar, E.S. Iversen, A.J. Hartemink, and S.B. Haase,
*Global control of cell-cycle transcription by coupled CDK and network oscillators*, Nature (May 7, 2008) - Tighe, BP; Socolar, JES,
*Nonlinear elastic stress response in granular packings.*, Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 77 no. 3 Pt 1 (March, 2008), pp. 031303, ISSN 1539-3755 - Ribeiro, AS; Kauffman, SA; Lloyd-Price, J; Samuelsson, B; Socolar, JES,
*Mutual information in random Boolean models of regulatory networks.*, Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 77 no. 1 Pt 1 (2008), pp. 011901, ISSN 1539-3755 - J.E.S. Socolar,
*Time-delay control for discrete maps*, in Handbook of Chaos Control, edited by E. Scholl and H. G. Schuster (December, 2007), Wiley-VCH Verlag GmbH - Norrell, J; Samuelsson, B; Socolar, JES,
*Attractors in continuous and Boolean networks.*, Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 76 no. 4 Pt 2 (October, 2007), pp. 046122, ISSN 1539-3755 - Berger, CM; Cain, JW; Socolar, JES; Gauthier, DJ,
*Control of electrical alternans in simulations of paced myocardium using extended time-delay autosynchronization.*, Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 76 no. 4 Pt 1 (October, 2007), pp. 041917, ISSN 1539-3755 (Selected for Virtual Journal of Biological Physics Research.) - Socolar, JES,
*Erratum: The hexagonal parquet tiling, k-isohedral monotiles with arbitrarily large k (The Mathematical Intelligencer 29:2 (33-38))*, The Mathematical Intelligencer, vol. 29 no. 4 (September, 2007), pp. 6, Springer Nature, ISSN 0343-6993 - Shreim, A; Grassberger, P; Nadler, W; Samuelsson, B; Socolar, JES; Paczuski, M,
*Network analysis of the state space of discrete dynamical systems.*, Physical Review Letters, vol. 98 no. 19 (May, 2007), pp. 198701, ISSN 0031-9007 - Socolar, JES,
*The hexagonal parquet tiling k-isohedral monotiles with arbitrarily large k*, The Mathematical Intelligencer, vol. 29 no. 2 (March, 2007), pp. 33-38, Springer Nature, ISSN 0343-6993 - Samuelsson, B; Socolar, JES,
*Exhaustive percolation on random networks*, Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 74 no. 3 (October, 2006), pp. 031912, American Physical Society (APS), ISSN 1539-3755 - Foster, DV; Kauffman, SA; Socolar, JES,
*Network growth models and genetic regulatory networks.*, Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 73 no. 3 Pt 1 (2006), pp. 031912, ISSN 1539-3755 - J.E.S. Socolar,
*Nonlinear Dynamical Systems*, in Complex Systems Science and Biomedicine, edited by Deisboeck and Kresh (February, 2006), Kluwer - Dealy, S; Kauffman, S; Socolar, J,
*Modeling pathways of differentiation in genetic regulatory networks with Boolean networks*, Complexity, vol. 11 no. 1 (September, 2005), pp. 52-60, WILEY, ISSN 1076-2787 - Tighe, BP; Socolar, JES; Schaeffer, DG; Mitchener, WG; Huber, ML,
*Force distributions in a triangular lattice of rigid bars.*, Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 72 no. 3 Pt 1 (September, 2005), pp. 031306, ISSN 1539-3755 - Harrington, I; Socolar, JES,
*Design and robustness of delayed feedback controllers for discrete systems*, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 69 no. 5 (2004), pp. 8, ISSN 1539-3755 - Hövel, P; Socolar, JES,
*Stability domains for time-delay feedback control with latency.*, Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 68 no. 3 Pt 2 (2003), pp. 036206, ISSN 1539-3755 - Socolar, JES; Kauffman, SA,
*Scaling in ordered and critical random boolean networks.*, Physical Review Letters, vol. 90 no. 6 (February, 2003), pp. 068702, ISSN 0031-9007 - Socolar, JES,
*Discrete models of force chain networks*, Discrete and Continuous Dynamical Systems Series B, vol. 3 no. 4 (January, 2003), pp. 601-618, American Institute of Mathematical Sciences (AIMS), ISSN 1531-3492 - Hövel, P; Socolar, JES,
*Stability domains for time-delay feedback control with latency*, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 68 no. 3 2 (2003), pp. 362061-362067 - Otto, M; Bouchaud, J-P; Claudin, P; Socolar, JES,
*Anisotropy in granular media: Classical elasticity and directed-force chain network*, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 67 no. 3 1 (2003), pp. 031302/1-031302/24, ISSN 1063-651X - Beck, O; Amann, A; Schöll, E; Socolar, JES; Just, W,
*Comparison of time-delayed feedback schemes for spatiotemporal control of chaos in a reaction-diffusion system with global coupling*, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 66 no. 1 (July, 2002), pp. 016213/1-016213/6, American Physical Society (APS), ISSN 1539-3755 - Socolar, JES; Schaeffer, DG; Claudin, P,
*Erratum to: Directed force chain networks and stress response in static granular materials*, The European Physical Journal. E, Soft Matter, vol. 8 no. 4 (July, 2002), pp. 453-453, Springer Nature - Socolar, JES; Schaeffer, DG; Claudin, P,
*Directed force chain networks and stress response in static granular materials*, European Physical Journal E, vol. 7 no. 4 (2002), pp. 353-370 - Harrington, I; Socolar, JE,
*Limitation on stabilizing plane waves via time-delay feedback.*, Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 64 no. 5 Pt 2 (November, 2001), pp. 056206, ISSN 1539-3755 - Socolar, JES,
*Evolution in a spatially structured population subject to rare epidemics*, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 63 no. 4 (January, 2001), pp. 419081-419088 - J.E.S Socolar,
*Chaos*, in Encyclopedia of Physical Science and Technology, 3rd Edition, edited by R. Meyers (2001), Academic Press (revision of article by R. Jensen.) - BLEICH, MICHAELE; SOCOLAR, JOSHUAES,
*DELAYED FEEDBACK CONTROL OF A PACED EXCITABLE OSCILLATOR*, International Journal of Bifurcation and Chaos, vol. 10 no. 03 (2000), pp. 603-609, World Scientific Pub Co Pte Lt - Richards, SA; Wilson, WG; Socolar, JE,
*Selection for intermediate mortality and reproduction rates in a spatially structured population.*, Proceedings of the Royal Society B: Biological Sciences, vol. 266 no. 1436 (December, 1999), pp. 2383-2388, ISSN 0962-8452 - Sexton, MG; Socolar, JE; Schaeffer, DG,
*Force distribution in a scalar model for noncohesive granular material.*, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 60 no. 2 Pt B (August, 1999), pp. 1999-2008, ISSN 1063-651X - Socolar, JES,
*Average stresses and force fluctuations in noncohesive granular materials*, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 57 no. 3 (March, 1998), pp. 3204-3215, AMERICAN PHYSICAL SOC - Egolf, DA; Socolar, JES,
*Failure of linear control in noisy coupled map lattices*, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 57 no. 5 (January, 1998), pp. 5271-5275, American Physical Society (APS) - Socolar, JES; Gauthier, DJ,
*Analysis and comparison of multiple-delay schemes for controlling unstable fixed points of discrete maps*, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 57 no. 6 (1998), pp. 6589-6595, American Physical Society (APS) - Gauthier, DJ; Socolar, JES,
*Comment on “Dynamic Control of Cardiac Alternans”*, Physical Review Letters, vol. 79 no. 24 (December, 1997), pp. 4938, American Physical Society (APS) - Sukow, DW; Bleich, ME; Gauthier, DJ; Socolar, JES,
*Controlling chaos in a fast diode resonator using extended time-delay autosynchronization: Experimental observations and theoretical analysis.*, Chaos, vol. 7 no. 4 (1997), pp. 560-576 - Bleich, ME; Hochheiser, D; Moloney, JV; Socolar, JES,
*Controlling extended systems with spatially filtered, time-delayed feedback*, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 55 no. 3 (1997), pp. 2119-2126, American Physical Society (APS) - Bleich, ME; Socolar, JES,
*Controlling spatiotemporal dynamics with time-delay feedback*, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 54 no. 1 (1996), pp. R17-R20, American Physical Society (APS), ISSN 1063-651X - Bleich, ME; Socolar, JES,
*Stability of periodic orbits controlled by time-delay feedback*, Physics Letters A, vol. 210 no. 1-2 (1995), pp. 87-94, Elsevier BV - Socolar, JE; Sukow, DW; Gauthier, DJ,
*Stabilizing unstable periodic orbits in fast dynamical systems.*, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 50 no. 4 (1994), pp. 3245-3248, ISSN 1063-651X - Gauthier, DJ; Sukow, DW; Concannon, HM; Socolar, JE,
*Stabilizing unstable periodic orbits in a fast diode resonator using continuous time-delay autosynchronization.*, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 50 no. 3 (1994), pp. 2343-2346, ISSN 1063-651X - Grinstein, G; Jayaprakash, C; Socolar, JE,
*Scale invariance of nonconserved quantities in driven systems.*, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 48 no. 2 (1993), pp. R643-R646, ISSN 1063-651X - SOCOLAR, JES; GRINSTEIN, G; JAYAPRAKASH, C,
*ON SELF-ORGANIZED CRITICALITY IN NONCONSERVING SYSTEMS*, Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 47 no. 4 (1993), pp. 2366-2376, AMERICAN PHYSICAL SOC, ISSN 1063-651X - Krug, J; Socolar, JE; Grinstein, G,
*Surface fluctuations and criticality in a class of one-dimensional sandpile models.*, Physical Review A, vol. 46 no. 8 (October, 1992), pp. R4479-R4482, ISSN 1050-2947 - Socolar, JES,
*Theory of Packings of Identical Hard Disks Generated by Ballistic Deposition*, Epl (Europhysics Letters), vol. 18 no. 1 (1992), pp. 39-44, IOP Publishing - Krug, J; Socolar, JE,
*Comment on "Scalings of growing self-organized surfaces"*, Phys Rev Lett, vol. 68 no. 5 (1992), pp. 722 - J.E.S. Socolar,
*Growth Rules for Quasicrystals*, in Quasicrystals: The State of the Art, edited by D. DiVincenzo and P. Steinhardt (1991), World Scientific, Singapore - Socolar, JES,
*Weak matching rules for quasicrystals*, Communications in Mathematical Physics, vol. 129 no. 3 (1990), pp. 599-619, Springer Nature, ISSN 0010-3616 - J.E.S. Socolar,
*The Alternation Condition and 2D Quasicrystals*, in Quasicrystals, Springer Series in Solid-State Sciences, edited by T. Fujiwara and T. Ogawa, vol. 93 (1990), Springer-Verlag, Berlin - Socolar, JE,
*Simple octagonal and dodecagonal quasicrystals.*, Physical Review. B, Condensed Matter, vol. 39 no. 15 (1989), pp. 10519-10551, ISSN 0163-1829 - Onoda, G; Steinhardt, PJ; DiVincenzo, D; Socolar, JE,
*Onoda etal. reply.*, Phys Rev Lett, vol. 62 no. 10 (March, 1989), pp. 1210 - J.E.S. Socolar,
*Locality Constraints and 2D Quasicrystals*, in Quasicrystals - Adriatico Anniversary Research Conference, edited by M.V. Jaric and S. Lundqvist (1989), World Scientific, Singapore - Onoda, GY; Steinhardt, PJ; DiVincenzo, DP; Socolar, JE,
*Growing perfect quasicrystals.*, Phys Rev Lett, vol. 60 no. 25 (1988), pp. 2653-2656 - Socolar, JE; Wright, DC,
*Explanation of peak shapes observed in diffraction from icosahedral quasicrystals.*, Phys Rev Lett, vol. 59 no. 2 (1987), pp. 221-224 - Lubensky, TC; Socolar, JE; Steinhardt, PJ; Bancel, PA; Heiney, AP,
*Distortion and peak broadening in quasicrystal diffraction patterns.*, Phys Rev Lett, vol. 57 no. 12 (1986), pp. 1440-1443 - Socolar, JE; Lubensky, TC; Steinhardt, PJ,
*Phonons, phasons, and dislocations in quasicrystals.*, Physical Review. B, Condensed Matter, vol. 34 no. 5 (1986), pp. 3345-3360, ISSN 0163-1829 - Socolar, JE; Steinhardt, PJ,
*Quasicrystals. II. Unit-cell configurations.*, Physical Review. B, Condensed Matter, vol. 34 no. 2 (July, 1986), pp. 617-647, ISSN 0163-1829 - Socolar, JES,
*Phason Strain in Quasicrystals*, Journal de Physique, vol. C3 (1986), pp. 217-227 - Socolar, JE; Steinhardt, PJ; Levine, D,
*Quasicrystals with arbitrary orientational symmetry.*, Rapid Communication, Physical Review. B, Condensed Matter, vol. 32 no. 8 (1985), pp. 5547-5550, ISSN 0163-1829 - Mele, EJ; Socolar, J,
*Numerical integration of the time evolution operator: Excited‐state dynamics in conjugated molecules*, Quantum Chemistry Symposium, International Journal of Quantum Chemistry, vol. 26 no. 18 S (1984), pp. 347-358, WILEY, ISSN 0020-7608 - Gollub, JP; Romer, EJ; Socolar, JE,
*Trajectory divergence for coupled relaxation oscillators: Measurements and models*, Journal of Statistical Physics, vol. 23 no. 3 (1980), pp. 321-333, Springer Nature, ISSN 0022-4715

**Papers Submitted**

- Y. Yang, L. Fu, C. Marcoux, J. E. S. Socolar, P. Charbonneau, B. B. Yellen,
*Martensitic transformations in binary colloidal monolayers*, PNAS (October, 2014)