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Publications of James S. Clark    :chronological  alphabetical  combined  bibtex listing:

Books

  1. J.S. Clark, Models for Ecological Data (under contract), Princeton University Press
  2. J.S. Clark, Ecological data models with R (under contract), Princeton University Press
  3. Clark, J.S. and A. Gelfand (eds.), Applications of Computational Statistics in the Environmental Sciences: Hierarchical Bayes and MCMC Methods (under contract), Oxford University Press
  4. Clark, J.S., B.J. Stocks, H. Cachier, and J.G. Goldammer (eds.), Sediment Records of Biomass Burning and Global Change (1997), Springer Verlag, Berlin, Germany

Papers Published

  1. Palacio, RD; Clark, JS, Incorporating intraspecific variation into species responses reveals both their resilience and vulnerability to future climate change, Ecography, vol. 2023 no. 11 (November, 2023) [doi]  [abs]
  2. Tang, B; Roberts, SM; Clark, JS; Gelfand, AE, Mechanistic modeling of climate effects on redistribution and population growth in a community of fish species., Global change biology, vol. 29 no. 22 (November, 2023), pp. 6399-6414 [doi]  [abs]
  3. Bogdziewicz, M; Calama, R; Courbaud, B; Espelta, JM; Hacket-Pain, A; Journé, V; Kunstler, G; Steele, M; Qiu, T; Zywiec, M; Clark, JS, How to measure mast seeding?, The New phytologist, vol. 239 no. 3 (August, 2023), pp. 830-838 [doi]  [abs]
  4. Clark, JS, The most abundant mammals on Earth., Trends in ecology & evolution, vol. 38 no. 7 (July, 2023), pp. 599-601 [doi]  [abs]
  5. Qiu, T; Aravena, M-C; Ascoli, D; Bergeron, Y; Bogdziewicz, M; Boivin, T; Bonal, R; Caignard, T; Cailleret, M; Calama, R; Calderon, SD; Camarero, JJ; Chang-Yang, C-H; Chave, J; Chianucci, F; Courbaud, B; Cutini, A; Das, AJ; Delpierre, N; Delzon, S; Dietze, M; Dormont, L; Espelta, JM; Fahey, TJ; Farfan-Rios, W; Franklin, JF; Gehring, CA; Gilbert, GS; Gratzer, G; Greenberg, CH; Guignabert, A; Guo, Q; Hacket-Pain, A; Hampe, A; Han, Q; Holik, J; Hoshizaki, K; Ibanez, I; Johnstone, JF; Journé, V; Kitzberger, T; Knops, JMH; Kunstler, G; Kurokawa, H; Lageard, JGA; LaMontagne, JM; Lefevre, F; Leininger, T; Limousin, J-M; Lutz, JA; Macias, D; Marell, A; McIntire, EJB; Moore, CM; Moran, E; Motta, R; Myers, JA; Nagel, TA; Naoe, S; Noguchi, M; Oguro, M; Parmenter, R; Pearse, IS; Perez-Ramos, IM; Piechnik, L; Podgorski, T; Poulsen, J; Redmond, MD; Reid, CD; Rodman, KC; Rodriguez-Sanchez, F; Samonil, P; Sanguinetti, JD; Scher, CL; Seget, B; Sharma, S; Shibata, M; Silman, M; Steele, MA; Stephenson, NL; Straub, JN; Sutton, S; Swenson, JJ; Swift, M; Thomas, PA; Uriarte, M; Vacchiano, G; Whipple, AV; Whitham, TG; Wion, AP; Wright, SJ; Zhu, K; Zimmerman, JK; Zywiec, M; Clark, JS, Masting is uncommon in trees that depend on mutualist dispersers in the context of global climate and fertility gradients., Nature plants, vol. 9 no. 7 (July, 2023), pp. 1044-1056 [doi]  [abs]
  6. Qiu, T; Bell, AJ; Swenson, JJ; Clark, JS, Habitat–trait interactions that control response to climate change: North American ground beetles (Carabidae), Global Ecology and Biogeography, vol. 32 no. 6 (June, 2023), pp. 987-1001 [doi]  [abs]
  7. Bogdziewicz, M; Acuña, MCA; Andrus, R; Ascoli, D; Bergeron, Y; Brveiller, D; Boivin, T; Bonal, R; Caignard, T; Cailleret, M; Calama, R; Calderon, SD; Camarero, JJ; Chang-Yang, CH; Chave, J; Chianucci, F; Cleavitt, NL; Courbaud, B; Cutini, A; Curt, T; Das, A; Davi, H; Delpierre, N; Delzon, S; Dietze, M; Dormont, L; Farfan-Rios, W; Gehring, CA; Gilbert, GS; Gratzer, G; Greenberg, CH; Guignabert, A; Guo, Q; Hacket-Pain, A; Hampe, A; Han, Q; Hoshizaki, K; Ibanez, I; Johnstone, JF; Journé, V; Kitzberger, T; Knops, JMH; Kunstler, G; Kobe, R; Lageard, JGA; LaMontagne, JM; Ledwon, M; Leininger, T; Limousin, JM; Lutz, JA; Macias, D; Marell, A; McIntire, EJB; Moran, E; Motta, R; Myers, J; Nagel, TA; Naoe, S; Noguchi, M; Oguro, M; Kurokawa, H; Ourcival, JM; Parmenter, R; Perez-Ramos, IM; Piechnik, L; Podgórski, T; Poulsen, J; Qiu, T; Redmond, MD; Reid, CD; Rodman, KC; Šamonil, P; Holik, J; Scher, CL; Van Marle, HS; Seget, B; Shibata, M; Sharma, S; Silman, M; Steele, MA; Straub, JN; Sun, IF; Sutton, S; Swenson, J; Thomas, PA; Uriarte, M; Vacchiano, G; Veblen, TT; Wright, B; Wright, SJ; Whitham, TG; Zhu, K; Zimmerman, JK; Zywiec, M; Clark, JS, Linking seed size and number to trait syndromes in trees, Global Ecology and Biogeography, vol. 32 no. 5 (May, 2023), pp. 683-694 [doi]  [abs]
  8. Scher, CL; Clark, JS, Species traits and observer behaviors that bias data assimilation and how to accommodate them., Ecological applications : a publication of the Ecological Society of America, vol. 33 no. 3 (April, 2023), pp. e2815 [doi]  [abs]
  9. Parsons, AW; Clark, JS; Kays, R, Monitoring small mammal abundance using NEON data: are calibrated indices useful?, Journal of Mammalogy, vol. 104 no. 2 (April, 2023), pp. 292-302 [doi]  [abs]
  10. Tang, B; Clark, JS; Marra, PP; Gelfand, AE, Modeling Community Dynamics Through Environmental Effects, Species Interactions and Movement, Journal of Agricultural, Biological, and Environmental Statistics, vol. 28 no. 1 (March, 2023), pp. 178-195 [doi]  [abs]
  11. Girard-Tercieux, C; Maréchaux, I; Clark, AT; Clark, JS; Courbaud, B; Fortunel, C; Guillemot, J; Künstler, G; le Maire, G; Pélissier, R; Rüger, N; Vieilledent, G, Rethinking the nature of intraspecific variability and its consequences on species coexistence., Ecology and evolution, vol. 13 no. 3 (March, 2023), pp. e9860 [doi]  [abs]
  12. Tang, B; Kamakura, RP; Barnett, DT; Clark, JS, Learning from monitoring networks: Few-large vs. many-small plots and multi-scale analysis, Frontiers in Ecology and Evolution, vol. 11 (January, 2023) [doi]  [abs]
  13. Hurst, JH; McCumber, AW; Aquino, JN; Rodriguez, J; Heston, SM; Lugo, DJ; Rotta, AT; Turner, NA; Pfeiffer, TS; Gurley, TC; Moody, MA; Denny, TN; Rawls, JF; Clark, JS; Woods, CW; Kelly, MS, Age-Related Changes in the Nasopharyngeal Microbiome Are Associated With Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection and Symptoms Among Children, Adolescents, and Young Adults., Clin Infect Dis, vol. 75 no. 1 (August, 2022), pp. e928-e937 [doi]  [abs]
  14. Knowlton, AR; Clark, JS; Hamilton, PK; Kraus, SD; Pettis, HM; Rolland, RM; Schick, RS, Fishing gear entanglement threatens recovery of critically endangered North Atlantic right whales, Conservation Science and Practice, vol. 4 no. 8 (August, 2022) [doi]  [abs]
  15. Journé, V; Andrus, R; Aravena, M-C; Ascoli, D; Berretti, R; Berveiller, D; Bogdziewicz, M; Boivin, T; Bonal, R; Caignard, T; Calama, R; Camarero, JJ; Chang-Yang, C-H; Courbaud, B; Courbet, F; Curt, T; Das, AJ; Daskalakou, E; Davi, H; Delpierre, N; Delzon, S; Dietze, M; Donoso Calderon, S; Dormont, L; Maria Espelta, J; Fahey, TJ; Farfan-Rios, W; Gehring, CA; Gilbert, GS; Gratzer, G; Greenberg, CH; Guo, Q; Hacket-Pain, A; Hampe, A; Han, Q; Lambers, JHR; Hoshizaki, K; Ibanez, I; Johnstone, JF; Kabeya, D; Kays, R; Kitzberger, T; Knops, JMH; Kobe, RK; Kunstler, G; Lageard, JGA; LaMontagne, JM; Leininger, T; Limousin, J-M; Lutz, JA; Macias, D; McIntire, EJB; Moore, CM; Moran, E; Motta, R; Myers, JA; Nagel, TA; Noguchi, K; Ourcival, J-M; Parmenter, R; Pearse, IS; Perez-Ramos, IM; Piechnik, L; Poulsen, J; Poulton-Kamakura, R; Qiu, T; Redmond, MD; Reid, CD; Rodman, KC; Rodriguez-Sanchez, F; Sanguinetti, JD; Scher, CL; Marle, HSV; Seget, B; Sharma, S; Silman, M; Steele, MA; Stephenson, NL; Straub, JN; Swenson, JJ; Swift, M; Thomas, PA; Uriarte, M; Vacchiano, G; Veblen, TT; Whipple, AV; Whitham, TG; Wright, B; Wright, SJ; Zhu, K; Zimmerman, JK; Zlotin, R; Zywiec, M; Clark, JS, Globally, tree fecundity exceeds productivity gradients., Ecology letters, vol. 25 no. 6 (June, 2022), pp. 1471-1482 [doi]  [abs]
  16. Qiu, T; Andrus, R; Aravena, M-C; Ascoli, D; Bergeron, Y; Berretti, R; Berveiller, D; Bogdziewicz, M; Boivin, T; Bonal, R; Bragg, DC; Caignard, T; Calama, R; Camarero, JJ; Chang-Yang, C-H; Cleavitt, NL; Courbaud, B; Courbet, F; Curt, T; Das, AJ; Daskalakou, E; Davi, H; Delpierre, N; Delzon, S; Dietze, M; Calderon, SD; Dormont, L; Espelta, J; Fahey, TJ; Farfan-Rios, W; Gehring, CA; Gilbert, GS; Gratzer, G; Greenberg, CH; Guo, Q; Hacket-Pain, A; Hampe, A; Han, Q; Hille Ris Lambers, J; Hoshizaki, K; Ibanez, I; Johnstone, JF; Journé, V; Kabeya, D; Kilner, CL; Kitzberger, T; Knops, JMH; Kobe, RK; Kunstler, G; Lageard, JGA; LaMontagne, JM; Ledwon, M; Lefevre, F; Leininger, T; Limousin, J-M; Lutz, JA; Macias, D; McIntire, EJB; Moore, CM; Moran, E; Motta, R; Myers, JA; Nagel, TA; Noguchi, K; Ourcival, J-M; Parmenter, R; Pearse, IS; Perez-Ramos, IM; Piechnik, L; Poulsen, J; Poulton-Kamakura, R; Redmond, MD; Reid, CD; Rodman, KC; Rodriguez-Sanchez, F; Sanguinetti, JD; Scher, CL; Schlesinger, WH; Schmidt Van Marle, H; Seget, B; Sharma, S; Silman, M; Steele, MA; Stephenson, NL; Straub, JN; Sun, I-F; Sutton, S; Swenson, JJ; Swift, M; Thomas, PA; Uriarte, M; Vacchiano, G; Veblen, TT; Whipple, AV; Whitham, TG; Wion, AP; Wright, B; Wright, SJ; Zhu, K; Zimmerman, JK; Zlotin, R; Zywiec, M; Clark, JS, Limits to reproduction and seed size-number trade-offs that shape forest dominance and future recovery., Nature communications, vol. 13 no. 1 (May, 2022), pp. 2381 [doi]  [abs]
  17. Núñez, CL; Poulsen, JR; White, LJT; Medjibe, V; Clark, JS, Distinct Community-Wide Responses to Forecasted Climate Change in Afrotropical Forests, Frontiers in Ecology and Evolution, vol. 9 (January, 2022) [doi]  [abs]
  18. Sharma, S; Andrus, R; Bergeron, Y; Bogdziewicz, M; Bragg, DC; Brockway, D; Cleavitt, NL; Courbaud, B; Das, AJ; Dietze, M; Fahey, TJ; Franklin, JF; Gilbert, GS; Greenberg, CH; Guo, Q; Hille Ris Lambers, J; Ibanez, I; Johnstone, JF; Kilner, CL; Knops, JMH; Koenig, WD; Kunstler, G; LaMontagne, JM; Macias, D; Moran, E; Myers, JA; Parmenter, R; Pearse, IS; Poulton-Kamakura, R; Redmond, MD; Reid, CD; Rodman, KC; Scher, CL; Schlesinger, WH; Steele, MA; Stephenson, NL; Swenson, JJ; Swift, M; Veblen, TT; Whipple, AV; Whitham, TG; Wion, AP; Woodall, CW; Zlotin, R; Clark, JS, North American tree migration paced by climate in the West, lagging in the East., Proceedings of the National Academy of Sciences of the United States of America, vol. 119 no. 3 (January, 2022), pp. e2116691118 [doi]  [abs]
  19. Roberts, SM; Halpin, PN; Clark, JS, Jointly modeling marine species to inform the effects of environmental change on an ecological community in the Northwest Atlantic., Scientific reports, vol. 12 no. 1 (January, 2022), pp. 132 [doi]  [abs]
  20. Qiu, T; Sharma, S; Woodall, CW; Clark, JS, Niche Shifts From Trees to Fecundity to Recruitment That Determine Species Response to Climate Change, Frontiers in Ecology and Evolution, vol. 9 (December, 2021) [doi]  [abs]
  21. Tang, B; Clark, JS; Gelfand, AE, Modeling spatially biased citizen science effort through the eBird database, Environmental and Ecological Statistics, vol. 28 no. 3 (September, 2021), pp. 609-630 [doi]  [abs]
  22. Qiu, T; Aravena, M-C; Andrus, R; Ascoli, D; Bergeron, Y; Berretti, R; Bogdziewicz, M; Boivin, T; Bonal, R; Caignard, T; Calama, R; Julio Camarero, J; Clark, CJ; Courbaud, B; Delzon, S; Donoso Calderon, S; Farfan-Rios, W; Gehring, CA; Gilbert, GS; Greenberg, CH; Guo, Q; Hille Ris Lambers, J; Hoshizaki, K; Ibanez, I; Journé, V; Kilner, CL; Kobe, RK; Koenig, WD; Kunstler, G; LaMontagne, JM; Ledwon, M; Lutz, JA; Motta, R; Myers, JA; Nagel, TA; Nuñez, CL; Pearse, IS; Piechnik, Ł; Poulsen, JR; Poulton-Kamakura, R; Redmond, MD; Reid, CD; Rodman, KC; Scher, CL; Schmidt Van Marle, H; Seget, B; Sharma, S; Silman, M; Swenson, JJ; Swift, M; Uriarte, M; Vacchiano, G; Veblen, TT; Whipple, AV; Whitham, TG; Wion, AP; Wright, SJ; Zhu, K; Zimmerman, JK; Żywiec, M; Clark, JS, Is there tree senescence? The fecundity evidence., Proceedings of the National Academy of Sciences of the United States of America, vol. 118 no. 34 (August, 2021), pp. e2106130118 [doi]  [abs]
  23. Lasky, M; Parsons, AW; Schuttler, SG; Hess, G; Sutherland, R; Kalies, L; Clark, S; Olfenbuttel, C; Matthews, J; Clark, JS; Siminitz, J; Davis, G; Shaw, J; Dukes, C; Hill, J; Kays, R, Carolina critters: a collection of camera-trap data from wildlife surveys across North Carolina., Ecology, vol. 102 no. 7 (July, 2021), pp. e03372 [doi]  [abs]
  24. Poggiato, G; Münkemüller, T; Bystrova, D; Arbel, J; Clark, JS; Thuiller, W, On the Interpretations of Joint Modeling in Community Ecology., Trends in ecology & evolution, vol. 36 no. 5 (May, 2021), pp. 391-401 [doi]  [abs]
  25. Bystrova, D; Poggiato, G; Bektaş, B; Arbel, J; Clark, JS; Guglielmi, A; Thuiller, W, Clustering Species With Residual Covariance Matrix in Joint Species Distribution Models, Frontiers in Ecology and Evolution, vol. 9 (March, 2021) [doi]  [abs]
  26. Clark, JS; Andrus, R; Aubry-Kientz, M; Bergeron, Y; Bogdziewicz, M; Bragg, DC; Brockway, D; Cleavitt, NL; Cohen, S; Courbaud, B; Daley, R; Das, AJ; Dietze, M; Fahey, TJ; Fer, I; Franklin, JF; Gehring, CA; Gilbert, GS; Greenberg, CH; Guo, Q; HilleRisLambers, J; Ibanez, I; Johnstone, J; Kilner, CL; Knops, J; Koenig, WD; Kunstler, G; LaMontagne, JM; Legg, KL; Luongo, J; Lutz, JA; Macias, D; McIntire, EJB; Messaoud, Y; Moore, CM; Moran, E; Myers, JA; Myers, OB; Nunez, C; Parmenter, R; Pearse, S; Pearson, S; Poulton-Kamakura, R; Ready, E; Redmond, MD; Reid, CD; Rodman, KC; Scher, CL; Schlesinger, WH; Schwantes, AM; Shanahan, E; Sharma, S; Steele, MA; Stephenson, NL; Sutton, S; Swenson, JJ; Swift, M; Veblen, TT; Whipple, AV; Whitham, TG; Wion, AP; Zhu, K; Zlotin, R, Author Correction: Continent-wide tree fecundity driven by indirect climate effects., Nature communications, vol. 12 no. 1 (March, 2021), pp. 1664 [doi]
  27. Clark, JS; Andrus, R; Aubry-Kientz, M; Bergeron, Y; Bogdziewicz, M; Bragg, DC; Brockway, D; Cleavitt, NL; Cohen, S; Courbaud, B; Daley, R; Das, AJ; Dietze, M; Fahey, TJ; Fer, I; Franklin, JF; Gehring, CA; Gilbert, GS; Greenberg, CH; Guo, Q; HilleRisLambers, J; Ibanez, I; Johnstone, J; Kilner, CL; Knops, J; Koenig, WD; Kunstler, G; LaMontagne, JM; Legg, KL; Luongo, J; Lutz, JA; Macias, D; McIntire, EJB; Messaoud, Y; Moore, CM; Moran, E; Myers, JA; Myers, OB; Nunez, C; Parmenter, R; Pearse, S; Pearson, S; Poulton-Kamakura, R; Ready, E; Redmond, MD; Reid, CD; Rodman, KC; Scher, CL; Schlesinger, WH; Schwantes, AM; Shanahan, E; Sharma, S; Steele, MA; Stephenson, NL; Sutton, S; Swenson, JJ; Swift, M; Veblen, TT; Whipple, AV; Whitham, TG; Wion, AP; Zhu, K; Zlotin, R, Continent-wide tree fecundity driven by indirect climate effects., Nature communications, vol. 12 no. 1 (February, 2021), pp. 1242 [doi]  [abs]
  28. Swenson, JJ; Qui, T; Schwantes, AM; Kilner, C; Nunez, C; Scher, L; Sharma, S; Clark, JS, Community Reorganization Response to Climate Change: Species Interactions, State-Space Modeling and Food Webs, International Geoscience and Remote Sensing Symposium (IGARSS) (September, 2020), pp. 3637-3639, ISBN 9781728163741 [doi]  [abs]
  29. Qiu, T; Song, C; Clark, JS; Seyednasrollah, B; Rathnayaka, N; Li, J, Understanding the continuous phenological development at daily time step with a Bayesian hierarchical space-time model: impacts of climate change and extreme weather events, Remote Sensing of Environment, vol. 247 (September, 2020) [doi]  [abs]
  30. Clark, JS; Scher, CL; Swift, M, The emergent interactions that govern biodiversity change., Proceedings of the National Academy of Sciences of the United States of America, vol. 117 no. 29 (July, 2020), pp. 17074-17083 [doi]  [abs]
  31. McDowell, NG; Allen, CD; Anderson-Teixeira, K; Aukema, BH; Bond-Lamberty, B; Chini, L; Clark, JS; Dietze, M; Grossiord, C; Hanbury-Brown, A; Hurtt, GC; Jackson, RB; Johnson, DJ; Kueppers, L; Lichstein, JW; Ogle, K; Poulter, B; Pugh, TAM; Seidl, R; Turner, MG; Uriarte, M; Walker, AP; Xu, C, Pervasive shifts in forest dynamics in a changing world., Science (New York, N.Y.), vol. 368 no. 6494 (May, 2020), pp. eaaz9463 [doi]  [abs]
  32. Seyednasrollah, B; Clark, JS, Where Resource-Acquisitive Species Are Located: The Role of Habitat Heterogeneity, Geophysical Research Letters, vol. 47 no. 8 (April, 2020) [doi]  [abs]
  33. Clark, JS; Nuñez, CL; Tomasek, B, Foodwebs based on unreliable foundations: spatiotemporal masting merged with consumer movement, storage, and diet, Ecological Monographs, vol. 89 no. 4 (November, 2019) [doi]  [abs]
  34. Wang, Z; Juarez, DL; Pan, J-F; Blinebry, SK; Gronniger, J; Clark, JS; Johnson, ZI; Hunt, DE, Microbial communities across nearshore to offshore coastal transects are primarily shaped by distance and temperature., Environmental microbiology, vol. 21 no. 10 (October, 2019), pp. 3862-3872 [doi]  [abs]
  35. Seyednasrollah, B; Domec, J-C; Clark, JS, Spatiotemporal sensitivity of thermal stress for monitoring canopy hydrological stress in near real-time, Agricultural and Forest Meteorology., vol. 269- (May, 2019), pp. 220-230 [doi]  [abs]
  36. Nuñez, CL; Clark, JS; Clark, CJ; Poulsen, JR, Low-intensity logging and hunting have long-term effects on seed dispersal but not fecundity in Afrotropical forests., AoB PLANTS, vol. 11 no. 1 (February, 2019), pp. ply074 [doi]  [abs]
  37. Knoepp, JD; See, CR; Vose, JM; Miniat, CF; Clark, JS, Total C and N Pools and Fluxes Vary with Time, Soil Temperature, and Moisture Along an Elevation, Precipitation, and Vegetation Gradient in Southern Appalachian Forests, Ecosystems, vol. 21 no. 8 (December, 2018), pp. 1623-1638, Springer Nature America, Inc [doi]  [abs]
  38. Berdanier, AB; Clark, JS, Tree water balance drives temperate forest responses to drought., Ecology, vol. 99 no. 11 (November, 2018), pp. 2506-2514 [doi]  [abs]
  39. Schliep, EM; Gelfand, AE; Clark, JS; Kays, R, Joint Temporal Point Pattern Models for Proximate Species Occurrence in a Fixed Area Using Camera Trap Data, Journal of Agricultural, Biological, and Environmental Statistics, vol. 23 no. 3 (September, 2018), pp. 334-357, Springer Nature America, Inc [doi]  [abs]
  40. Seyednasrollah, B; Swenson, JJ; Domec, J-C; Clark, JS, Leaf phenology paradox: Why warming matters most where it is already warm, Remote Sensing of Environment., vol. 209 (May, 2018), pp. 446-455, Elsevier BV [doi]  [abs]
  41. Bachelot, B; Uriarte, M; Muscarella, R; Forero-Montaña, J; Thompson, J; McGuire, K; Zimmerman, J; Swenson, NG; Clark, JS, Associations among arbuscular mycorrhizal fungi and seedlings are predicted to change with tree successional status., Ecology, vol. 99 no. 3 (March, 2018), pp. 607-620 [doi]  [abs]
  42. Usinowicz, J; Chang-Yang, C-H; Chen, Y-Y; Clark, JS; Fletcher, C; Garwood, NC; Hao, Z; Johnstone, J; Lin, Y; Metz, MR; Masaki, T; Nakashizuka, T; Sun, I-F; Valencia, R; Wang, Y; Zimmerman, JK; Ives, AR; Wright, SJ, Temporal coexistence mechanisms contribute to the latitudinal gradient in forest diversity., Nature, vol. 550 no. 7674 (October, 2017), pp. 105-108 [doi]  [abs]
  43. Goñi, MFS; Desprat, S; Daniau, AL; Bassinot, FC; Polanco-Martínez, JM; Harrison, SP; Allen, JRM; Scott Anderson, R; Behling, H; Bonnefille, R; Burjachs, F; Carrión, JS; Cheddadi, R; Clark, JS; Combourieu-Nebout, N; Mustaphi, CJC; Debusk, GH; Dupont, LM; Finch, JM; Fletcher, WJ; Giardini, M; González, C; Gosling, WD; Grigg, LD; Grimm, EC; Hayashi, R; Helmens, K; Heusser, LE; Hill, T; Hope, G; Huntley, B; Igarashi, Y; Irino, T; Jacobs, B; Jiménez-Moreno, G; Kawai, S; Peter Kershaw, A; Kumon, F; Lawson, IT; Ledru, MP; Lézine, AM; Mei Liew, P; Magri, D; Marchant, R; Margari, V; Mayle, FE; Merna Mckenzie, G; Moss, P; Müller, S; Müller, UC; Naughton, F; Newnham, RM; Oba, T; Pérez-Obiol, R; Pini, R; Ravazzi, C; Roucoux, KH; Rucina, SM; Scott, L; Takahara, H; Tzedakis, PC; Urrego, DH; Van Geel, B; Guido Valencia, B; Vandergoes, MJ; Vincens, A; Whitlock, CL; Willard, DA; Yamamoto, M, The ACER pollen and charcoal database: A global resource to document vegetation and fire response to abrupt climate changes during the last glacial period, Earth System Science Data, vol. 9 no. 2 (September, 2017), pp. 679-695, Copernicus GmbH [doi]  [abs]
  44. Kim, D; Oren, R; Clark, JS; Palmroth, S; Oishi, AC; McCarthy, HR; Maier, CA; Johnsen, K, Dynamics of soil CO2 efflux under varying atmospheric CO2 concentrations reveal dominance of slow processes., Global change biology, vol. 23 no. 9 (September, 2017), pp. 3501-3512 [doi]  [abs]
  45. Schliep, EM; Gelfand, AE; Clark, JS; Tomasek, BJ, Biomass prediction using a density-dependent diameter distribution model, Annals of Applied Statistics, vol. 11 no. 1 (March, 2017), pp. 340-361, Institute of Mathematical Statistics [doi]  [abs]
  46. Clark, JS; Nemergut, D; Seyednasrollah, B; Turner, PJ; Zhang, S, Generalized joint attribute modeling for biodiversity analysis: Median-zero, multivariate, multifarious data, Ecological Monographs, vol. 87 no. 1 (February, 2017), pp. 34-56, WILEY [doi]  [abs]
  47. Taylor-Rodríguez, D; Kaufeld, K; Schliep, EM; Clark, JS; Gelfand, AE, Joint species distribution modeling: Dimension reduction using Dirichlet processes, Bayesian Analysis, vol. 12 no. 4 (January, 2017), pp. 939-967, Institute of Mathematical Statistics [doi]  [abs]
  48. Vose, JM; Clark, JS; Luce, CH, Introduction to drought and US forests: Impacts and potential management responses, Forest Ecology and Management, vol. 380 (November, 2016), pp. 296-298, Elsevier BV [doi]
  49. Crowther, TW; Todd-Brown, KEO; Rowe, CW; Wieder, WR; Carey, JC; Machmuller, MB; Snoek, BL; Fang, S; Zhou, G; Allison, SD; Blair, JM; Bridgham, SD; Burton, AJ; Carrillo, Y; Reich, PB; Clark, JS; Classen, AT; Dijkstra, FA; Elberling, B; Emmett, BA; Estiarte, M; Frey, SD; Guo, J; Harte, J; Jiang, L; Johnson, BR; Kröel-Dulay, G; Larsen, KS; Laudon, H; Lavallee, JM; Luo, Y; Lupascu, M; Ma, LN; Marhan, S; Michelsen, A; Mohan, J; Niu, S; Pendall, E; Peñuelas, J; Pfeifer-Meister, L; Poll, C; Reinsch, S; Reynolds, LL; Schmidt, IK; Sistla, S; Sokol, NW; Templer, PH; Treseder, KK; Welker, JM; Bradford, MA, Quantifying global soil carbon losses in response to warming., Nature, vol. 540 no. 7631 (November, 2016), pp. 104-108 [doi]  [abs]
  50. Berdanier, AB; Miniat, CF; Clark, JS, Predictive models for radial sap flux variation in coniferous, diffuse-porous and ring-porous temperate trees., Tree physiology, vol. 36 no. 8 (August, 2016), pp. 932-941 [doi]  [abs]
  51. Clark, JS, Why species tell more about traits than traits about species: predictive analysis., Ecology, vol. 97 no. 8 (August, 2016), pp. 1979-1993 [doi]  [abs]
  52. Clark, JS; Vose, JM; Luce, CH, Forest drought as an emerging research priority., Global change biology, vol. 22 no. 7 (July, 2016), pp. 2317 [doi]
  53. Clark, JS; Iverson, L; Woodall, CW; Allen, CD; Bell, DM; Bragg, DC; D'Amato, AW; Davis, FW; Hersh, MH; Ibanez, I; Jackson, ST; Matthews, S; Pederson, N; Peters, M; Schwartz, MW; Waring, KM; Zimmermann, NE, The impacts of increasing drought on forest dynamics, structure, and biodiversity in the United States., Global change biology, vol. 22 no. 7 (July, 2016), pp. 2329-2352 [doi]  [abs]
  54. Berdanier, AB; Clark, JS, Divergent reproductive allocation trade-offs with canopy exposure across tree species in temperate forests, Ecosphere, vol. 7 no. 6 (June, 2016), pp. e01313-e01313, WILEY [doi]  [abs]
  55. Bell, DM; Clark, JS, Seed predation and climate impacts on reproductive variation in temperate forests of the southeastern USA., Oecologia, vol. 180 no. 4 (April, 2016), pp. 1223-1234 [doi]  [abs]
  56. Schliep, EM; Gelfand, AE; Clark, JS; Zhu, K, Modeling change in forest biomass across the eastern US, Environmental and Ecological Statistics, vol. 23 no. 1 (March, 2016), pp. 23-41, Springer Nature, ISSN 1352-8505 [doi]  [abs]
  57. Ghosh, S; Zhu, K; Gelfand, AE; Clark, JS, Joint Modeling of Climate Niches for Adult and Juvenile Trees, Journal of Agricultural, Biological, and Environmental Statistics, vol. 21 no. 1 (March, 2016), pp. 111-130, Springer Nature [doi]  [abs]
  58. Rolland, RM; Schick, RS; Pettis, HM; Knowlton, AR; Hamilton, PK; Clark, JS; Kraus, SD, Health of North Atlantic right whales Eubalaena glacialis over three decades: From individual health to demographic and population health trends, Marine Ecology Progress Series, vol. 542 (January, 2016), pp. 265-282, Inter-Research Science Center [doi]  [abs]
  59. Berdanier, AB; Clark, JS, Multiyear drought-induced morbidity preceding tree death in southeastern U.S. forests., Ecological applications : a publication of the Ecological Society of America, vol. 26 no. 1 (January, 2016), pp. 17-23, WILEY [doi]  [abs]
  60. Oedekoven, C; Fleishman, E; Hamilton, P; Clark, JS; Schick, RS, Expert elicitation of seasonal abundance of North Atlantic right whales Eubalaena glacialis in the mid-Atlantic, Endangered Species Research, vol. 29 no. 1 (January, 2016), pp. 51-58, Inter-Research Science Center [doi]  [abs]
  61. Schliep, EM; Gelfand, AE; Clark, JS, Stochastic Modeling for Velocity of Climate Change, Journal of Agricultural, Biological, and Environmental Statistics, vol. 20 no. 3 (September, 2015), pp. 323-342, Springer Nature, ISSN 1085-7117 [doi]  [abs]
  62. Zhu, K; Woodall, CW; Monteiro, JVD; Clark, JS, Prevalence and strength of density-dependent tree recruitment., Ecology, vol. 96 no. 9 (September, 2015), pp. 2319-2327, ISSN 0012-9658 [doi]  [abs]
  63. Bell, DM; Ward, EJ; Oishi, AC; Oren, R; Flikkema, PG; Clark, JS, A state-space modeling approach to estimating canopy conductance and associated uncertainties from sap flux density data., Tree physiology, vol. 35 no. 7 (July, 2015), pp. 792-802, ISSN 0829-318X [doi]  [abs]
  64. Clark, JS; Salk, C; Melillo, J; Mohan, J, Tree phenology responses to winter chilling, spring warming, at north and south range limits, Functional Ecology, vol. 28 no. 6 (December, 2014), pp. 1344-1355, ISSN 0269-8463 [doi]  [abs]
  65. Clark, JS; Gelfand, AE; Woodall, CW; Zhu, K, More than the sum of the parts: forest climate response from joint species distribution models., Ecological applications : a publication of the Ecological Society of America, vol. 24 no. 5 (July, 2014), pp. 990-999, ISSN 1051-0761 [doi]  [abs]
  66. Clark, JS; Bell, DM; Kwit, MC; Zhu, K, Competition-interaction landscapes for the joint response of forests to climate change., Global change biology, vol. 20 no. 6 (June, 2014), pp. 1979-1991, ISSN 1354-1013 [doi]  [abs]
  67. Clark, JS; Melillo, J; Mohan, J; Salk, C, The seasonal timing of warming that controls onset of the growing season., Global change biology, vol. 20 no. 4 (April, 2014), pp. 1136-1145 [24115181], [doi]  [abs]
  68. Wu, W; Clark, JS; Vose, JM, Response of hydrology to climate change in the southern Appalachian Mountains using Bayesian inference, Hydrological Processes, vol. 28 no. 4 (February, 2014), pp. 1616-1626, ISSN 0885-6087 [doi]  [abs]
  69. New, LF; Clark, JS; Costa, DP; Fleishman, E; Hindell, MA; Klanjšček, T; Lusseau, D; Kraus, S; McMahon, CR; Robinson, PW; Schick, RS; Schwarz, LK; Simmons, SE; Thomas, L; Tyack, P; Harwood, J, Using short-term measures of behaviour to estimate long-term fitness of southern elephant seals, Marine Ecology Progress Series, vol. 496 (January, 2014), pp. 99-108, Inter-Research Science Center, ISSN 0171-8630 [doi]  [abs]
  70. Ghosh, S; Bell, DM; Clark, JS; Gelfand, AE; Flikkema, PG, Process modeling for soil moisture using sensor network data, Statistical Methodology, vol. 17 no. C (January, 2014), pp. 99-112, Elsevier BV, ISSN 1572-3127 [doi]  [abs]
  71. Zhu, K; Woodall, CW; Ghosh, S; Gelfand, AE; Clark, JS, Dual impacts of climate change: forest migration and turnover through life history., Global change biology, vol. 20 no. 1 (January, 2014), pp. 251-264 [24014498], [doi]  [abs]
  72. Clark, JS; Melillo, J; Mohan, J; Salk, C, The seasonal timing of warming that controls onset of the growing season, Global Change Biology, vol. 20 no. 4 (2014), pp. 1136-1145, ISSN 1354-1013
  73. Benítez, M-S; Hersh, MH; Vilgalys, R; Clark, JS, Pathogen regulation of plant diversity via effective specialization., Trends in ecology & evolution, vol. 28 no. 12 (December, 2013), pp. 705-711 [24091206], [doi]  [abs]
  74. Schick, RS; Roberts, JJ; Eckert, SA; Halpin, PN; Bailey, H; Chai, F; Shi, L; Clark, JS, Pelagic movements of pacific leatherback turtles (dermochelys coriacea) highlight the role of prey and ocean currents, Movement Ecology, vol. 1 no. 1 (November, 2013), pp. 11-11, Springer Nature [doi]  [abs]
  75. Bugalho, MN; Ibáñez, I; Clark, JS, The effects of deer herbivory and forest type on tree recruitment vary with plant growth stage, Forest Ecology and Management, vol. 308 (November, 2013), pp. 90-100, Elsevier BV, ISSN 0378-1127 [doi]  [abs]
  76. Gelfand, AE; Ghosh, S; Clark, JS, Scaling integral projection models for analyzing size demography, Statistical Science, vol. 28 no. 4 (November, 2013), pp. 641-658, Institute of Mathematical Statistics, ISSN 0883-4237 [doi]  [abs]
  77. Schick, RS; New, LF; Thomas, L; Costa, DP; Hindell, MA; Mcmahon, CR; Robinson, PW; Simmons, SE; Thums, M; Harwood, J; Clark, JS, Estimating resource acquisition and at-sea body condition of a marine predator, Journal of Animal Ecology, vol. 82 no. 6 (November, 2013), pp. 1300-1315, ISSN 0021-8790 [doi]  [abs]
  78. Schick, RS; New, LF; Thomas, L; Costa, DP; Hindell, MA; McMahon, CR; Robinson, PW; Simmons, SE; Thums, M; Harwood, J; Clark, JS, Estimating resource acquisition and at-sea body condition of a marine predator., The Journal of animal ecology, vol. 82 no. 6 (November, 2013), pp. 1300-1315 [23869551], [doi]  [abs]
  79. Clark, JS; Bell, DM; Kwit, M; Powell, A; Zhu, K, Dynamic Inverse Prediction and Sensitivity Analysis With High-Dimensional Responses: Application to Climate-Change Vulnerability of Biodiversity, Journal of Agricultural, Biological, and Environmental Statistics, vol. 18 no. 3 (September, 2013), pp. 376-404, Springer Nature, ISSN 1085-7117 [doi]  [abs]
  80. Benitez, MS; Hersh, MH; Becker, L; Vilgalys, R; Clark, JS, Host generalism in fungal pathogen and endophytes of seedlings and forest community dynamics, PHYTOPATHOLOGY, vol. 103 no. 6 (June, 2013), pp. 14-15, AMER PHYTOPATHOLOGICAL SOC
  81. New, LF; Harwood, J; Thomas, L; Donovan, C; Clark, JS; Hastie, G; Thompson, PM; Cheney, B; Scott-Hayward, L; Lusseau, D, Modelling the biological significance of behavioural change in coastal bottlenose dolphins in response to disturbance, edited by Costa, D, Functional Ecology, vol. 27 no. 2 (April, 2013), pp. 314-322, WILEY, ISSN 0269-8463 [doi]  [abs]
  82. Valle, D; Clark, J, Improving the modeling of disease data from the government surveillance system: a case study on malaria in the Brazilian Amazon., PLoS computational biology, vol. 9 no. 11 (January, 2013), pp. e1003312, ISSN 1553-734X [doi]  [abs]
  83. Schick, RS; Kraus, SD; Rolland, RM; Knowlton, AR; Hamilton, PK; Pettis, HM; Kenney, RD; Clark, JS, Using hierarchical bayes to understand movement, health, and survival in the endangered north atlantic right whale., PloS one, vol. 8 no. 6 (January, 2013), pp. e64166 [23762237], [doi]  [abs]
  84. Valle, D; Clark, J, Conservation efforts may increase malaria burden in the Brazilian Amazon., PloS one, vol. 8 no. 3 (January, 2013), pp. e57519, ISSN 1932-6203 [doi]  [abs]
  85. J.S. Clark, see cv (2013)
  86. Ghosh, S; Gelfand, AE; Clark, JS, Inference for Size Demography from Point Pattern Data using Integral Projection Models., Journal of agricultural, biological, and environmental statistics, vol. 17 no. 4 (December, 2012), pp. 641-677, ISSN 1085-7117 [doi]  [abs]
  87. Ghosh, S; Gelfand, AE; Clark, JS, Rejoinder, Journal of Agricultural, Biological, and Environmental Statistics, vol. 17 no. 4 (December, 2012), pp. 693-699, Springer Nature, ISSN 1085-7117 [doi]
  88. Rapp, JM; Silman, MR; Clark, JS; Girardin, CAJ; Galiano, D; Tito, R, Intra- and interspecific tree growth across a long altitudinal gradient in the Peruvian Andes., Ecology, vol. 93 no. 9 (September, 2012), pp. 2061-2072, ISSN 0012-9658 [doi]  [abs]
  89. Ghosh, S; Gelfand, AE; Zhu, K; Clark, JS, The k-ZIG: flexible modeling for zero-inflated counts., Biometrics, vol. 68 no. 3 (September, 2012), pp. 878-885, Blackwell Publishing Inc [22348816], [doi]  [abs]
  90. Clark, JS, The missing link: From island extinction to Neutral Theory (a reply to Halley and Iwasa), Trends in Ecology and Evolution, vol. 27 no. 7 (July, 2012), pp. 364, Elsevier BV, ISSN 0169-5347 [doi]
  91. Moran, EV; Clark, JS, Causes and consequences of unequal seedling production in forest trees: a case study in red oaks., Ecology, vol. 93 no. 5 (May, 2012), pp. 1082-1094, Ecological Society of America, ISSN 0012-9658 [doi]  [abs]
  92. Clark, JS, The coherence problem with the Unified Neutral Theory of Biodiversity., Trends in ecology & evolution, vol. 27 no. 4 (April, 2012), pp. 198-202, Elsevier Current Trends [22401902], [doi]  [abs]
  93. Hersh, MH; Vilgalys, R; Clark, JS, Evaluating the impacts of multiple generalist fungal pathogens on temperate tree seedling survival., Ecology, vol. 93 no. 3 (March, 2012), pp. 511-520, Ecological Society of America, ISSN 0012-9658 [22624206], [doi]  [abs]
  94. Zhu, K; Woodall, CW; Clark, JS, Failure to migrate: Lack of tree range expansion in response to climate change, Global Change Biology, vol. 18 no. 3 (March, 2012), pp. 1042-1052, WILEY, ISSN 1354-1013 [pdf], [doi]  [abs]
  95. Evans, LM; Clark, JS; Whipple, AV; Whitham, TG, The relative influences of host plant genotype and yearly abiotic variability in determining herbivore abundance., Oecologia, vol. 168 no. 2 (February, 2012), pp. 483-489, ISSN 0029-8549 [doi]  [abs]
  96. Clark, JS; Soltoff, BD; Powell, AS; Read, QD, Evidence from individual inference for high-dimensional coexistence: long-term experiments on recruitment response., PloS one, vol. 7 no. 2 (January, 2012), pp. e30050, Public Library of Science [22393349], [doi]  [abs]
  97. Moran, EV; Willis, J; Clark, JS, Genetic evidence for hybridization in red oaks (Quercus sect. Lobatae, Fagaceae)., American journal of botany, vol. 99 no. 1 (January, 2012), pp. 92-100, Botanical Soc America, ISSN 0002-9122 [doi]  [abs]
  98. Moran, EV; Clark, JS, Between-site differences in the scale of dispersal and gene flow in red oak., PloS one, vol. 7 no. 5 (January, 2012), pp. e36492, Public Library of Science, ISSN 1932-6203 [doi]  [abs]
  99. Clark, JS; Bell, DM; Kwit, M; Stine, A; Vierra, B; Zhu, K, Individual-scale inference to anticipate climate-change vulnerability of biodiversity., Philosophical transactions of the Royal Society of London. Series B, Biological sciences, vol. 367 no. 1586 (January, 2012), pp. 236-246, The Royal Society [22144386], [doi]  [abs]
  100. Colchero, F; Clark, JS, Bayesian inference on age-specific survival for censored and truncated data., The Journal of animal ecology, vol. 81 no. 1 (January, 2012), pp. 139-149, ISSN 0021-8790 [pdf], [doi]  [abs]
  101. Zhu, K. and Woodall, C.W. and Clark, J.S., Failure to migrate: lack of tree range expansion in response to climate change, Global Change Biology (2012)
  102. Evans, L.M. and Clark, J.S. and Whipple, A.V. and Whitham, T.G., The relative influences of host plant genotype and yearly abiotic variability in determining herbivore abundance, Oecologia, vol. 168 no. 2 (2012), pp. 483--489, Springer Berlin/Heidelberg
  103. Uriarte, M; Clark, JS; Zimmerman, JK; Comita, LS; Forero-Monta n a, J; Thompson, J, Multidimensional trade-offs in species responses to disturbance: implications for diversity in a subtropical forest, Ecology, vol. 93 no. 1 (2012), pp. 191-205, Ecological Society of America, ISSN 0012-9658 [doi]  [abs]
  104. Ward, EJ; Oren, R; Bell, DM; Clark, JS; McCarthy, HR; Kim, HS; Domec, JC, The effects of elevated CO2 and nitrogen fertilization on stomatal conductance estimated from 11 years of scaled sap flux measurements at Duke FACE, Tree Physiology, vol. 33 no. 2 (2012), pp. 135-151, Oxford University Press [23243030], [doi]  [abs]
  105. Wei, W; Clark, JS; Vose, JM, Application of a Full Hierarchical Bayesian Model in Assessing Streamflow Response to a Climate Change Scenario at the Coweeta Basin, NC, USA, Journal of Resources and Ecology, vol. 3 no. 2 (2012), pp. 118-128, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences
  106. Ward, EJ; Bell, DM; Clark, JS; Oren, R, Hydraulic time constants for transpiration of loblolly pine at a free-air carbon dioxide enrichment site, Tree Physiology, vol. 33 no. 2 (2012), pp. 123-134, Oxford University Press [23192973], [doi]  [abs]
  107. Wu, W; Clark, JS; Vose, JM, Response of hydrology to climate change in the southern Appalachian Mountains using Bayesian inferences, Hydrological Processes, vol. 28 no. 4 (2012), pp. 1616-1626, WILEY [doi]
  108. Clark, JS; Bell, DM; Hersh, MH; Kwit, MC; Moran, E; Salk, C; Stine, A; Valle, D; Zhu, K, Individual-scale variation, species-scale differences: inference needed to understand diversity., Ecology letters, vol. 14 no. 12 (December, 2011), pp. 1273-1287, ISSN 1461-023X [21978194], [doi]  [abs]
  109. Agarwal, PK; Mølhave, T; Yu, H; Clark, JS, Exploiting temporal coherence in forest dynamics simulation, in COMPUTATIONAL GEOMETRY (SCG 11), Proceedings of the Annual Symposium on Computational Geometry (July, 2011), pp. 77-86, ACM Press, ISBN 978-1-4503-0682-9 [doi]  [abs]
  110. Clark, James S.; Agarwal, Pankaj; Bell, David M.; Flikkema, Paul G.; Gelfand, Alan; Nguyen, Xuanlong; Ward, Eric; Yang, Jun, Inferential ecosystem models, from network data to prediction, ECOLOGICAL APPLICATIONS, vol. 21 no. 5 (July, 2011), pp. 1523-1536, ISSN 1051-0761  [abs]
  111. Luo, Y; Ogle, K; Tucker, C; Fei, S; Gao, C; LaDeau, S; Clark, JS; Schimel, DS, Ecological forecasting and data assimilation in a data-rich era., Ecological applications : a publication of the Ecological Society of America, vol. 21 no. 5 (July, 2011), pp. 1429-1442, ISSN 1051-0761 [doi]  [abs]
  112. Clark, JS; Agarwal, P; Bell, DM; Flikkema, PG; Gelfand, A; Nguyen, X; Ward, E; Yang, J, Inferential ecosystem models, from network data to prediction., Ecological applications : a publication of the Ecological Society of America, vol. 21 no. 5 (July, 2011), pp. 1523-1536, ISSN 1051-0761 [21830699], [doi]  [abs]
  113. Clark, James S.; Bell, David M.; Hersh, Michelle H.; Nichols, Lauren, Climate change vulnerability of forest biodiversity: climate and competition tracking of demographic rates, GLOBAL CHANGE BIOLOGY, vol. 17 no. 5 (May, 2011), pp. 1834-1849, ISSN 1354-1013 [doi]  [abs]
  114. Clark, JS; Bell, DM; Hersh, MH; Nichols, L, Climate change vulnerability of forest biodiversity: Climate and competition tracking of demographic rates, Global Change Biology, vol. 17 no. 5 (May, 2011), pp. 1834-1849, WILEY, ISSN 1354-1013 [doi]  [abs]
  115. Moran, Emily V. and Clark, James S., Estimating seed and pollen movement in a monoecious plant: a hierarchical Bayesian approach integrating genetic and ecological data, MOLECULAR ECOLOGY, vol. 20 no. 6 (March, 2011), pp. 1248-1262, ISSN 0962-1083 [doi]  [abs]
  116. Clark, JS, not complete, please see CV, AAPG Bulletin (Spring, 2011)
  117. Moran, EV; Clark, JS, Estimating seed and pollen movement in a monoecious plant: a hierarchical Bayesian approach integrating genetic and ecological data., Molecular ecology, vol. 20 no. 6 (March, 2011), pp. 1248-1262 [21332584], [doi]  [abs]
  118. Luo, Yiqi; Melillo, Jerry; Niu, Shuli; Beier, Claus; Clark, James S.; Classen, Aimee T.; Davidson, Eric; Dukes, Jeffrey S.; Evans, R. Dave; Field, Christopher B.; Czimczik, Claudia I.; Keller, Michael and Kimball, Bruce A.; Kueppers, Lara M.; Norby, Richard J.; Pelini, Shannon L.; Pendall, Elise; Rastetter, Edward; Six, Johan; Smith, Melinda; Tjoelker, Mark G.; Torn, Margaret S., Coordinated approaches to quantify long-term ecosystem dynamics in response to global change, GLOBAL CHANGE BIOLOGY, vol. 17 no. 2 (February, 2011), pp. 843-854, ISSN 1354-1013 [doi]  [abs]
  119. Luo, Y; Melillo, J; Niu, S; Beier, C; Clark, JS; Classen, AT; Davidson, E; Dukes, JS; Evans, RD; Field, CB; Czimczik, CI; Keller, M; Kimball, BA; Kueppers, LM; Norby, RJ; Pelini, SL; Pendall, E; Rastetter, E; Six, J; Smith, M; Tjoelker, MG; Torn, MS, Coordinated approaches to quantify long-term ecosystem dynamics in response to global change, Global Change Biology, vol. 17 no. 2 (February, 2011), pp. 843-854, WILEY, ISSN 1354-1013 [doi]  [abs]
  120. Valle, D; Clark, JS; Zhao, K, Enhanced understanding of infectious diseases by fusing multiple datasets: a case study on malaria in the Western Brazilian Amazon region., PloS one, vol. 6 no. 11 (January, 2011), pp. e27462, ISSN 1932-6203 [22087321], [doi]  [abs]
  121. Agarwal, Pankaj K.; Molhave, Thomas; Yu, Hai; Clark, James S., Exploiting Temporal Coherence in Forest Dynamics Simulation, in COMPUTATIONAL GEOMETRY (SCG 11) (2011), pp. 77-86, ISBN 978-1-4503-0682-9  [abs]
  122. MORAN, E.V. and CLARK, J.S., Estimating seed and pollen movement in a monoecious plant: a hierarchical Bayesian approach integrating genetic and ecological data, Molecular Ecology, vol. 20 no. 6 (2011), pp. 1248--1262, Wiley Online Library
  123. Clark, J.S. and Bell, D.M. and Hersh, M.H. and Kwit, M.C. and Moran, E. and Salk, C. and Stine, A. and Valle, D. and Zhu, K., Individual-scale variation, species-scale differences: inference needed to understand diversity, Ecology letters (2011), Blackwell Publishing Ltd
  124. Clark, J.S. and Bell, D.M. and Hersh, M.H. and Nichols, L., Climate change vulnerability of forest biodiversity: climate and competition tracking of demographic rates, Global Change Biology, vol. 17 no. 5 (2011), pp. 1834--1849, Wiley Online Library
  125. Luo, Y. and Ogle, K. and Tucker, C. and Fei, S. and Gao, C. and LaDeau, S. and Clark, J.S. and Schimel, D.S., Ecological forecasting and data assimilation in a data-rich era, Ecological Applications, vol. 21 no. 5 (2011), pp. 1429--1442, Eco Soc America
  126. Agarwal, P.K. and M{\o}lhave, T. and Yu, H. and Clark, J.S., Exploiting temporal coherence in forest dynamics simulation, in Proceedings of the 27th annual ACM symposium on Computational geometry (2011), pp. 77--86
  127. Clark, J.S. and Agarwal, P. and Bell, D.M. and Flikkema, P.G. and Gelfand, A. and Nguyen, X. and Ward, E. and Yang, J., Inferential ecosystem models, from network data to prediction, Ecological Applications, vol. 21 no. 5 (2011), pp. 1523--1536, Eco Soc America
  128. Colchero, F. and Clark, J.S., Bayesian inference on age-specific survival for censored and truncated data, Journal of Animal Ecology, vol. 81 no. 1 (2011), pp. 139--149, Blackwell Publishing Ltd
  129. Valle, D. and Clark, J.S. and Zhao, K., Enhanced Understanding of Infectious Diseases by Fusing Multiple Datasets: A Case Study on Malaria in the Western Brazilian Amazon Region, PloS one, vol. 6 no. 11 (2011), pp. e27462, Public Library of Science
  130. J.S. Clark, see CV for complete list (2011)
  131. Luo, YQ; Ogle, K; Tucker, C; Fei, S; Gao, C; LaDeau, S; Clark, JS; Schimel, D, Data assimilation and ecological forecasting in a data-rich era, Ecological Applications, vol. 21 (2011), pp. 1429-1442
  132. Wu, W; Clark, JS; Vose, JM, Assimilating multi-source uncertainties of a parsimonious conceptual hydrological model using hierarchical Bayesian modeling, Journal of Hydrology, vol. 394 no. 3-4 (November, 2010), pp. 436-446, Elsevier BV, ISSN 0022-1694 [doi]  [abs]
  133. Clark, JS; Bell, D; Chu, C; Courbaud, B; Dietze, M; Hersh, M; Hillerislambers, J; Ibáñez, I; Ladeau, S; McMahon, S; Metcalf, J; Mohan, J; Moran, E; Pangle, L; Pearson, S; Salk, C; Shen, Z; Valle, D; Wyckoff, P, High-dimensional coexistence based on individual variation: A synthesis of evidence, Ecological Monographs, vol. 80 no. 4 (November, 2010), pp. 569-608, WILEY, ISSN 0012-9615 [doi]  [abs]
  134. Vieilledent, G; Courbaud, B; Kunstler, G; Dhôte, J-F; Clark, JS, Individual variability in tree allometry determines light resource allocation in forest ecosystems: a hierarchical Bayesian approach., Oecologia, vol. 163 no. 3 (July, 2010), pp. 759-773, ISSN 0029-8549 [doi]  [abs]
  135. WAY, DA; LaDeau, SL; MCCARTHY, HR; CLARK, JS; Oren, R; FINZI, AC; Jackson, RB, Greater seed production in elevated CO₂ is not accompanied by reduced seed quality in Pinus taeda L, Global Change Biology., vol. 16 no. 3 (March, 2010), pp. 1046-1056, WILEY, ISSN 1354-1013 [doi]  [abs]
  136. Clark, JS, Individuals and the variation needed for high species diversity in forest trees., Science (New York, N.Y.), vol. 327 no. 5969 (February, 2010), pp. 1129-1132, American Association for the Advancement of Science [20185724], [doi]  [abs]
  137. Luo, Y. and Melillo, J. and Niu, S. and Beier, C. and Clark, J.S. and CLASSEN, A.T. and Davidson, E. and Dukes, J.S. and EVANS, R. and Field, C.B. and others, Coordinated approaches to quantify long-term ecosystem dynamics in response to global change, Global Change Biology, vol. 17 no. 2 (2010), pp. 843--854, Blackwell Publishing Ltd
  138. Wu, W. and Clark, J.S. and Vose, J.M., Assimilating multi-source uncertainties of a parsimonious conceptual hydrological model using hierarchical Bayesian modeling, Journal of hydrology, vol. 394 no. 3 (2010), pp. 436--446, Elsevier
  139. Clark, J.S. and Bell, D. and Chu, C. and Courbaud, B. and Dietze, M. and Hersh, M. and HilleRisLambers, J. and Ib{\'a}{\~n}ez, I. and LaDeau, S. and McMahon, S. and others, High-dimensional coexistence based on individual variation: a synthesis of evidence, Ecological Monographs, vol. 80 no. 4 (2010), pp. 569--608, Eco Soc America
  140. Vieilledent, G. and Courbaud, B. and Kunstler, G. and Dh{\^o}te, J.F. and Clark, J.S., Individual variability in tree allometry determines light resource allocation in forest ecosystems: a hierarchical Bayesian approach, Oecologia, vol. 163 no. 3 (2010), pp. 759--773, Springer
  141. Moran, E.V. and Willis, J. and Clark, J.S., COS 87-4: Hybridization in two mixed-species red oak populations: Implications for response to global change, The 95th ESA Annual Meeting (2010)
  142. Clark, JS; Bell, D; Dietze, M; Hersh, M; Ibanez, I; LaDeau, S; McMahon, S; Metcalf, J; Moran, E; Pangle, L; others, , Models for demography of plant populations, The Oxford handbook of applied Bayesian analysis. Oxford University Press, New York, New York, USA (2010), pp. 431-481
  143. Clark, JS; Hersh, MH, Inference in incidence, infection, and impact: Co-infection of multiple hosts by multiple pathogens, Bayesian Analysis, vol. 4 no. 2 (December, 2009), pp. 337-366, Institute of Mathematical Statistics, ISSN 1936-0975 [doi]  [abs]
  144. Metcalf, CJE; McMahon, SM; Clark, JS, Overcoming data sparseness and parametric constraints in modeling of tree mortality: A new nonparametric Bayesian model, Canadian Journal of Forest Research, vol. 39 no. 9 (September, 2009), pp. 1677-1687, Canadian Science Publishing, ISSN 0045-5067 [doi]  [abs]
  145. Vieilledent, G; Courbaud, B; Kunstler, G; Dhôte, JF; Clark, JS, Biases in the estimation of size-dependent mortality models: Advantages of a semiparametric approach, Canadian Journal of Forest Research, vol. 39 no. 8 (August, 2009), pp. 1430-1443, Canadian Science Publishing, ISSN 0045-5067 [doi]  [abs]
  146. Colchero, F; Medellin, RA; Clark, JS; Lee, R; Katul, GG, Predicting population survival under future climate change: density dependence, drought and extraction in an insular bighorn sheep., The Journal of animal ecology, vol. 78 no. 3 (May, 2009), pp. 666-673, Wiley Online Library [19245378], [doi]  [abs]
  147. Ibáñez, I; Clark, JS; Dietze, MC, Estimating colonization potential of migrant tree species, Global Change Biology, vol. 15 no. 5 (April, 2009), pp. 1173-1188, WILEY, ISSN 1354-1013 [doi]  [abs]
  148. McMahon, SM; Dietze, MC; Hersh, MH; Moran, EV; Clark, JS, A predictive framework to understand forest responses to global change., Annals of the New York Academy of Sciences, vol. 1162 no. 1 (April, 2009), pp. 221-236, Wiley Online Library [19432650], [doi]  [abs]
  149. Cressie, N; Calder, CA; Clark, JS; Ver Hoef, JM; Wikle, CK, Accounting for uncertainty in ecological analysis: the strengths and limitations of hierarchical statistical modeling., Ecological applications : a publication of the Ecological Society of America, vol. 19 no. 3 (April, 2009), pp. 553-570, ISSN 1051-0761 [doi]  [abs]
  150. Metcalf, CJE; Clark, JS; Clark, DA, Tree growth inference and prediction when the point of measurement changes: Modelling around buttresses in tropical forests, Journal of Tropical Ecology, vol. 25 no. 1 (January, 2009), pp. 1-12, Cambridge University Press (CUP), ISSN 0266-4674 [doi]  [abs]
  151. Clark, JS, Beyond neutral science., Trends in ecology & evolution, vol. 24 no. 1 (January, 2009), pp. 8-15, ISSN 0169-5347 [19026462], [doi]  [abs]
  152. WAY, D.A. and LADEAU, S.L. and MCCARTHY, H.R. and CLARK, J.S. and OREN, RAM and FINZI, A.C. and JACKSON, R.B., Greater seed production in elevated CO2 is not accompanied by reduced seed quality in Pinus taeda L., Global Change Biology, vol. 16 no. 3 (2009), pp. 1046--1056, Blackwell Publishing Ltd
  153. Cressie, N. and Calder, C.A. and Clark, J.S. and Hoef, J.M.V. and Wikle, C.K., Accounting for uncertainty in ecological analysis: the strengths and limitations of hierarchical statistical modeling, Ecological Applications, vol. 19 no. 3 (2009), pp. 553--570, Eco Soc America
  154. Metcalf, C.J.E. and Clark, J.S. and Clark, D.A., Tree growth inference and prediction when the point of measurement changes: modelling around buttresses in tropical forests, Journal of Tropical Ecology, vol. 25 no. 01 (2009), pp. 1--12, Cambridge Univ Press
  155. Metcalf, C.J.E.M.C.J.E. and McMahon, S.M.M.M.S.M. and Clark, J.S.C.J.S., Overcoming data sparseness and parametric constraints in modeling of tree mortality: a new nonparametric Bayesian model, Canadian Journal of Forest Research, vol. 39 no. 9 (2009), pp. 1677--1687
  156. Vieilledent, G.V.G. and Courbaud, B.C.B. and Kunstler, G.K.G. and Jean-Fran{\cc}ois Dh{\^o}te, J.F.D. and Clark, J.S.C.J.S., Biases in the estimation of size-dependent mortality models: advantages of a semiparametric approach, Canadian Journal of Forest Research, vol. 39 no. 8 (2009), pp. 1430--1443, NRC Research Press
  157. Clark, J.S., Beyond neutral science, Trends in Ecology & Evolution, vol. 24 no. 1 (2009), pp. 8--15, Elsevier
  158. Clark, J.S., Beyond neutral science, Trends Ecol Evol no. 24 (2009), pp. 8-15
  159. Way, D.A., S. L. LaDeau, H. R. McCarthy, J. S. Clark, R. Oren, A. C. Finzi and R. B. Jackson, Greater seed production in elevated CO2 is not accompanied by reduced seed quality in Pinus taeda L, Ecological Society of America Annual Meeting (2009)
  160. Schick, R.S., P. N. Halpin, A. J. Read, C. K. Slay, S. D. Kraus, B. R. Mate, M. F. Baumgartner, J. J. Roberts, B. D. Best, C. P. Good, S. R. Loarie, and J. S. Clark, Striking the right balance in right whale conservation, Canadian Journal of Fisheries and Aquatic Sciences (2009)
  161. Colchero, F., R. A. Medellin, J. S. Clark, R. Lee, and G. G. Katul, Predicting population survival under future climate change: density dependence, drought and extraction in an insular bighorn sheep (2009)
  162. Brzuszek, RF; Clark, J, Visitor perceptions of ecological design at the Crosby Arboretum, Picayune, Mississippi, Native Plants Journal, vol. 10 no. 2 (2009), pp. 91-105, University of Wisconsin Press
  163. Ibáñez, ; I, ; Clark, ; S, J; Dietze, , Estimating performance of potential migrant species, Global Change Biology (2009)
  164. Schick, RS; Halpin, PN; Read, AJ; Slay, CS; Kraus, SD; Mate, BR; Baumgartner, MF; Roberts, JJ; Best, BD; Good, CP; Loarie, SR; Clark, JS, Striking the right balance in right whale conservation, Canadian Journal of Fisheries & Aquatic Sciences, vol. 66 no. 9 (2009), pp. 1399-1403, Canadian Science Publishing, ISSN 0706-652X [doi]  [abs]
  165. Clark, JS; Hersh, MH, Inference when multiple pathogens affect multiple hosts: Bayesian model selection, bayesian analysis (2009)
  166. Dietze, MC; Wolosin, MS; Clark, JS, Capturing diversity and interspecific variability in allometries: A hierarchical approach, Forest Ecology and Management, vol. 256 no. 11 (November, 2008), pp. 1939-1948, Elsevier BV, ISSN 0378-1127 [doi]  [abs]
  167. Schick, RS; Clark, JS; Loarie, SR; Best, BD; Boustany, A; Colchero, F; Conde, DA; Halpin, PN; Joppa, LN; McClellan, CM, Understanding movement data and movement processes: current and emerging directions, Ecol Letters, vol. 11 no. 12 (October, 2008), pp. 1338-1350, Blackwell Publishing Ltd [19046362], [doi]  [abs]
  168. Ibáñez, I; Clark, JS; Dietze, MC, Evaluating the sources of potential migrant species: implications under climate change., Ecological applications : a publication of the Ecological Society of America, vol. 18 no. 7 (October, 2008), pp. 1664-1678, ISSN 1051-0761 [18839762], [doi]  [abs]
  169. Gugger, PF; McLachlan, JS; Manos, PS; Clark, JS, Inferring long-distance dispersal and topographic barriers during post-glacial colonization from the genetic structure of red maple (Acer rubrum L.) in New England, Journal of Biogeography, vol. 35 no. 9 (September, 2008), pp. 1665-1673, WILEY, ISSN 0305-0270 [doi]  [abs]
  170. Dietze, MC; Clark, JS, Changing the gap dynamics paradigm: Vegetative regeneration control on forest response tO disturbance, Ecological Monographs, vol. 78 no. 3 (August, 2008), pp. 331-347, WILEY, ISSN 0012-9615 [doi]  [abs]
  171. Power, MJ; Marlon, J; Ortiz, N; Bartlein, PJ; Harrison, SP; Mayle, FE; Ballouche, A; Bradshaw, RHW; Carcaillet, C; Cordova, C; Mooney, S; Moreno, PI; Prentice, IC; Thonicke, K; Tinner, W; Whitlock, C; Zhang, Y; Zhao, Y; Ali, AA; Anderson, RS; Beer, R; Behling, H; Briles, C; Brown, KJ; Brunelle, A; Bush, M; Camill, P; Chu, GQ; Clark, J; Colombaroli, D; Connor, S; Daniau, AL; Daniels, M; Dodson, J; Doughty, E; Edwards, ME; Finsinger, W; Foster, D; Frechette, J; Gaillard, MJ; Gavin, DG; Gobet, E; Haberle, S; Hallett, DJ; Higuera, P; Hope, G; Horn, S; Inoue, J; Kaltenrieder, P; Kennedy, L; Kong, ZC; Larsen, C; Long, CJ; Lynch, J; Lynch, EA; McGlone, M; Meeks, S; Mensing, S; Meyer, G; Minckley, T; Mohr, J; Nelson, DM; New, J; Newnham, R; Noti, R; Oswald, W; Pierce, J; Richard, PJH; Rowe, C; Sanchez Goñi, MF; Shuman, BN; Takahara, H; Toney, J; Turney, C; Urrego-Sanchez, DH; Umbanhowar, C; Vandergoes, M; Vanniere, B; Vescovi, E; Walsh, M; Wang, X; Williams, N; Wilmshurst, J; Zhang, JH, Changes in fire regimes since the last glacial maximum: An assessment based on a global synthesis and analysis of charcoal data, Climate Dynamics, vol. 30 no. 7-8 (June, 2008), pp. 887-907, Springer Nature, ISSN 0930-7575 [doi]  [abs]
  172. Hui, D; Luo, Y; Schimel, D; Clark, JS; Hasting, A; Ogle, K; Williams, M, Converting raw data into ecologically meaningful products, Eos, vol. 89 no. 5 (February, 2008), pp. 39, American Geophysical Union (AGU), ISSN 0096-3941 [doi]
  173. Mohan, JE; Ziska, LH; Thomas, RB; Sicher, RC; George, K; Clark, JS; Schlesinger, WH, Biomass and toxicity responses of poison ivy (Toxicodendron radicans) to elevated atmospheric CO2: Reply, Ecology, vol. 89 no. 2 (February, 2008), pp. 585-587, WILEY, ISSN 0012-9658 [doi]
  174. Clark, J.S. and Wyman, R.L., Ecosystem sensitivity to climate change and complex responses (2008), Routeledge, Chapman and Hall
  175. Dietze, M.C. and Clark, J.S., Changing the gap dynamics paradigm: vegetative regeneration control on forest response to disturbance, Ecological Monographs, vol. 78 no. 3 (2008), pp. 331--347, Eco Soc America
  176. Gugger, P.F. and McLachlan, J.S. and Manos, P.S. and Clark, J.S., Inferring long-distance dispersal and topographic barriers during post-glacial colonization from the genetic structure of red maple (Acer rubrum L.) in New England, Journal of Biogeography, vol. 35 no. 9 (2008), pp. 1665--1673, Blackwell Publishing Ltd
  177. Ib{\'a}{\~n}ez, I. and Clark, J.S. and Dietze, M.C., Evaluating the sources of potential migrant species: implications under climate change, Ecological Applications, vol. 18 no. 7 (2008), pp. 1664--1678, Eco Soc America
  178. Dietze, M., M. Wolosin, J. S. Clark, Tree allometries: capturing diversity using a Hierarchical Bayes approach. Forest Ecology and Management, vol. 256 (2008), pp. 1939-1948
  179. Clark, J.S., D. Bell, M.l Dietze, M. Hersh, I. Ibanez, S. LaDeau, S. McMahon, J. Metcalf, E. Moran, L. Pangle, and M. Wolosin, Models for demography of plant populations, in Handbook of Bayesian Analysis, edited by T. O'Hagan and M. West (2008), Oxford University Press (in press..)
  180. Colchero, F., R. A. Medellin, J. S. Clark, R. Lee, and G. G. Katul, Predicting population survival under future climate change: density dependence, drought and extraction in an insular bighorn sheep, Journal of Animal Ecology no. 78 (2008), pp. 666-673
  181. Metcalf, C.J.E., J. S. Clark, and D. A. Clark, Tree growth inference and prediction when the point of measurement changes: modelling around buttresses in tropical forests, Journal of Tropical Ecology (2008)
  182. Ibáñez, I., Clark, J.S. and Dietze, M., Estimating performance of potential migrant species, Global Change Biology (2008)
  183. Poland, M; Miklius, A; Orr, T; Sutton, J; Thornber, C; Wilson, C; Hui, D; Luo, Y; Schimel, D; Clark, JS; others, , New episodes of volcanism at Kilauea Volcano, Hawaii, Eos, vol. 89 no. 5 (2008), pp. 37-38
  184. Power, MJ; Marlon, J; Ortiz, N; Bartlein, PJ; Harrison, SP; Mayle, FE; Ballouche, A; Bradshaw, RHW; Carcaillet, C; Cordova, C; others, , Changes in fire regimes since the Last Glacial Maximum: an assessment based on a global synthesis and analysis of charcoal data, Climate Dynamics, vol. 30 no. 7 (2008), pp. 887-907, Springer, ISSN 0930-7575 [doi]  [abs]
  185. Schick, RS; Loarie, SR; Colchero, F; Best, BD; Boustany, A; Conde, DA; Halpin, PN; Joppa, LN; McClellan, CM; Clark, JS, Understanding movement data and processes: emerging techniques, Ecol Letters (2008)
  186. Dietze, M; Clark, JS, Rethinking gap dynamics: the impact of damaged trees and sprouts, Ecol Monog no. 78 (2008), pp. 331-347
  187. Clark, JS; Wolosin, M; Dietze, M; Ibáñez, I; LaDeau, S; Welsh, M; Kloeppel, B, Tree growth inference and prediction from diameter censuses and ring widths., Ecological applications : a publication of the Ecological Society of America, vol. 17 no. 7 (October, 2007), pp. 1942-1953, Ecological Society of America, ISSN 1051-0761 [17974333], [doi]  [abs]
  188. Govindarajan, S; Dietze, MC; Agarwal, PK; Clark, JS, A scalable algorithm for dispersing population, Journal of Intelligent Information Systems, vol. 29 no. 1 (August, 2007), pp. 39-61, Springer Nature, ISSN 0925-9902 [s10844-006-0030-z], [doi]  [abs]
  189. Clark, JS; Dietze, M; Chakraborty, S; Agarwal, PK; Ibanez, I; LaDeau, S; Wolosin, M, Resolving the biodiversity paradox., Ecology letters, vol. 10 no. 8 (August, 2007), pp. 647-659 [17594418], [doi]  [abs]
  190. Mohan, JE; Clark, JS; Schlesinger, WH, Long-term CO2 enrichment of a forest ecosystem: implications for forest regeneration and succession., Ecological applications : a publication of the Ecological Society of America, vol. 17 no. 4 (June, 2007), pp. 1198-1212, Eco Soc America, ISSN 1051-0761 [17555228], [doi]  [abs]
  191. Ibáñez, I; Clark, JS; LaDeau, S; Hille Ris Lambers, J, Exploiting temporal variability to understand tree recruitment response to climate change, Ecological Monographs, vol. 77 no. 2 (May, 2007), pp. 163-177, WILEY, ISSN 0012-9615 [doi]  [abs]
  192. Flikkema, PG; Agarwal, PK; Clark, JS; Ellis, C; Gelfand, A; Munagala, K; Yang, J, From data reverence to data relevance: Model-mediated wireless sensing of the physical environment, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 4487 LNCS (January, 2007), pp. 988-994, Springer, ISSN 0302-9743, ISBN 9783540725831 [doi]  [abs]
  193. Clark, JS; Agarwal, PK, Rejoinder to Clark et al. (2007): Response to Chesson and Rees, Ecology Letters, vol. 10 no. 8 (January, 2007), pp. 661-662, WILEY, ISSN 1461-023X [doi]
  194. Govindarajan, S. and Dietze, M.C. and Agarwal, P.K. and Clark, J.S., A scalable algorithm for dispersing population, Journal of Intelligent Information Systems, vol. 29 no. 1 (2007), pp. 39--61, Springer
  195. Clark, J.S. and Dietze, M. and Chakraborty, S. and Agarwal, P.K. and Ibanez, I. and LaDeau, S. and Wolosin, M., Resolving the biodiversity paradox, Ecology Letters, vol. 10 no. 8 (2007), pp. 647--659, Blackwell Publishing Ltd
  196. Ib{\'a}{\~n}ez, I. and Clark, J.S. and LaDeau, S. and Lambers, J.H.R., Exploiting temporal variability to understand tree recruitment response to climate change, Ecological Monographs, vol. 77 no. 2 (2007), pp. 163--177
  197. Flikkema, P.G., P.J. K. Agarwal, J. S. Clark, C. Ellis, A. Gelfand, K. Munagala, and J. Yang, From data reverence to data relevance: Model-mediated wireless sensing of the physical environment, in ICCS 2007, Part I, LNCS 4487, edited by Y. Shi et al. (2007), pp. 988–994
  198. Brzuszek, RF; Clark, J, Are They Getting It?, Landscape Architecture, vol. 97 no. 5 (2007), pp. 78, ASLA AMERICAN SOCIETY OF LANDSCAPE ARCHITECTS
  199. Clark, JS; Wolosin, M; Dietze, M; Ibanez, I; LaDeau, S; Welsh, M; Kloeppel, B, Tree growth inference and prediction from diameter censuses and ring widths. Ecological Applications, Ecol Appl, vol. 17 (2007), pp. 1942-1953
  200. Ibáñez, I; Clark, JS; Dietze, MC; Feeley, K; Hersh, M; LaDeau, S; McBride, A; Welch, NE; Wolosin, MS, Predicting biodiversity change: outside the climate envelope, beyond the species-area curve., Ecology, vol. 87 no. 8 (August, 2006), pp. 1896-1906, Eco Soc America, ISSN 0012-9658 [16937626], [doi]  [abs]
  201. Clark, JS; Gelfand, AE, A future for models and data in environmental science., Trends in ecology & evolution, vol. 21 no. 7 (July, 2006), pp. 375-380, Elsevier, ISSN 0169-5347 [16815437], [doi]  [abs]
  202. Read, AF; Clark, JS, The next 20 years of ecology and evolution., Trends in ecology & evolution, vol. 21 no. 7 (July, 2006), pp. 354-355, Elsevier Science, ISSN 0169-5347 [doi]
  203. Read, AF; Clark, JS, The past 20 years of ecology and evolution., Trends in ecology & evolution, vol. 21 no. 6 (June, 2006), pp. 287, Amsterdam [Netherlands]: Elsevier Science Publishers BV [(Biomedical Division)], c1986-, ISSN 0169-5347 [doi]
  204. Ladeau, SL; Clark, JS, Pollen production by Pinus taeda growing in elevated atmospheric CO 2, Functional Ecology, vol. 20 no. 3 (June, 2006), pp. 541-547, WILEY, ISSN 0269-8463 [doi]  [abs]
  205. Mohan, JE; Ziska, LH; Schlesinger, WH; Thomas, RB; Sicher, RC; George, K; Clark, JS, Biomass and toxicity responses of poison ivy (Toxicodendron radicans) to elevated atmospheric CO2., Proceedings of the National Academy of Sciences of the United States of America, vol. 103 no. 24 (June, 2006), pp. 9086-9089, ISSN 0027-8424 [16754866], [doi]  [abs]
  206. LaDeau, SL; Clark, JS, Elevated CO2 and tree fecundity: The role of tree size, interannual variability, and population heterogeneity, Global Change Biology, vol. 12 no. 5 (May, 2006), pp. 822-833, WILEY, ISSN 1354-1013 [doi]  [abs]
  207. Flikkema, PG; Agarwal, PK; Clark, JS; Ellis, C; Gelfand, A; Munagala, K; Yang, J, Model-driven dynamic control of embedded wireless sensor networks, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 3993 LNCS - III (January, 2006), pp. 409-416, Springer Berlin Heidelberg, ISSN 0302-9743 [doi]  [abs]
  208. Clark, J.S. and Stocks, B.J. and Richard, P.J.H., Climate implications of biomass burning since the 19th century in eastern North America, Global Change Biology, vol. 2 no. 5 (2006), pp. 433--442, Blackwell Publishing Ltd
  209. Mohan, J.E. and Ziska, L.H. and Schlesinger, W.H. and Thomas, R.B. and Sicher, R.C. and George, K. and Clark, J.S., Biomass and toxicity responses of poison ivy (Toxicodendron radicans) to elevated atmospheric CO2, Proceedings of the National Academy of Sciences, vol. 103 no. 24 (2006), pp. 9086--9089, National Acad Sciences
  210. Lewis, M; Neubert, M; Caswell, H; Clark, J; Shea, K, A guide to calculating discrete-time invasion rates from data, Conceptual ecology and invasion biology: reciprocal approaches to nature (2006), pp. 169-192, Springer [doi]  [abs]
  211. Clark, JS; LaDeau, S, Synthesizing ecological experiments and observational data with hierarchical Bayes, Hierarchical models of the environment. Oxford University Press, Oxford, UK (2006), pp. 41-58
  212. Clark, JS; Gelfand, AE, A future for models and data in ecology, Trends Ecol Evol no. 21 (2006), pp. 375-380
  213. Beckage, B; Lavine, M; Clark, JS, Survival of tree seedlings across space and time: Estimates from long-term count data, Journal of Ecology, vol. 93 no. 6 (December, 2005), pp. 1177-1184, WILEY, ISSN 0022-0477 [doi]  [abs]
  214. Brown, KJ; Clark, JS; Grimm, EC; Donovan, JJ; Mueller, PG; Hansen, BCS; Stefanova, I, Fire cycles in North American interior grasslands and their relation to prairie drought., Proceedings of the National Academy of Sciences of the United States of America, vol. 102 no. 25 (June, 2005), pp. 8865-8870, ISSN 0027-8424 (in press.) [15956200], [doi]  [abs]
  215. Beckage, B; Clark, JS, Does predation contribute to tree diversity?, Oecologia, vol. 143 no. 3 (April, 2005), pp. 458-469, Springer [doi]  [abs]
  216. Hille Ris Lambers, J; Clark, JS, The benefits of seed banking for red maple (Acer rubrum): Maximizing seedling recruitment, Canadian Journal of Forest Research, vol. 35 no. 4 (April, 2005), pp. 806-813, Canadian Science Publishing (in press.) [doi]  [abs]
  217. Lambers, JHR; Clark, JS; Lavine, M, Implications of seed banking for recruitment of southern Appalachian woody species, Ecology, vol. 86 no. 1 (January, 2005), pp. 85-95, WILEY, ISSN 0012-9658 [doi]  [abs]
  218. Wyckoff, PH; Clark, JS, Tree growth prediction using size and exposed crown area, Canadian Journal of Forest Research, vol. 35 no. 1 (January, 2005), pp. 13-20, Canadian Science Publishing [doi]  [abs]
  219. Clark, JS; Ferraz, G; Oguge, N; Hays, H; DiCostanzo, J, Hierarchical Bayes for structured, variable populations: From recapture data to life-history prediction, Ecology, vol. 86 no. 8 (January, 2005), pp. 2232-2244, WILEY (in press.) [doi]  [abs]
  220. McLachlan, JS; Clark, JS; Manos, PS, Molecular indicators of tree migration capacity under rapid climate change, Ecology, vol. 86 no. 8 (January, 2005), pp. 2088-2098, WILEY (in press.) [doi]  [abs]
  221. Clark, JS, Why environmental scientists are becoming Bayesians, Ecology Letters, vol. 8 no. 1 (January, 2005), pp. 2-14, WILEY, ISSN 1461-023X [doi]  [abs]
  222. Brown, KJ and Clark, JS and Grimm, EC and Donovan, JJ and Mueller, PG and Hansen, BCS and Stefanova, I., Fire cycles in North American interior grasslands and their relation to prairie drought, Proceedings of the National Academy of Sciences of the United States of America, vol. 102 no. 25 (2005), pp. 8865--8870, National Acad Sciences
  223. McLachlan, J.S. and Clark, J.S. and Manos, P.S., Molecular indicators of tree migration capacity under rapid climate change, Ecology, vol. 86 no. 8 (2005), pp. 2088--2098, Eco Soc America
  224. Lambers, J.H.R. and Clark, J.S., The benefits of seed banking for red maple (Acer rubrum): maximizing seedling recruitment, Canadian Journal of Forest Research, vol. 35 no. 4 (2005), pp. 806--813, NRC Research Press Ottawa, Canada
  225. Clark, J.S. and Ferraz, G. and Oguge, N. and Hays, H. and DiCostanzo, J., Hierarchical Bayes for structured, variable populations: from recapture data to life-history prediction, Ecology, vol. 86 no. 8 (2005), pp. 2232--2244, Eco Soc America
  226. Wyckoff, P; Clark, JS, Comparing predictors of tree growth: the case for exposed canopy area, Canadian Journal of Forest Research (2005) (in press.)
  227. Hille Ris Lambers, J; Clark, JS; Lavine, M, Seed banking in temperate forests: Implications for recruitment limitation, Ecology (2005) (in press.)
  228. Beckage, B; Clark, JS, Do seed and seedling predation contribute to the coexistence of three co-occuring tree species?, Oecologia (2005) (in press.)
  229. Clark, JS, Uncertainty in population growth rates calculated from demography: the hierarchical approach, Ecology, vol. 84 (2005), pp. 1370-1381
  230. McLachlan, JS; Clark, JS, Reconstructing historical ranges with fossil data at continental scales, Forest Ecology and Management, vol. 197 no. 1-3 (August, 2004), pp. 139-147, Elsevier BV [doi]  [abs]
  231. Lynch, JA; Clark, JS; Stocks, BJ, Charcoal production, dispersal, and deposition from the Fort Providence experimental fire: Interpreting fire regimes from charcoal records in boreal forests, Canadian Journal of Forest Research, vol. 34 no. 8 (August, 2004), pp. 1642-1656, Canadian Science Publishing [doi]  [abs]
  232. Clark, JS, Neutral theory (communication arising): The stability of forest biodiversity, Nature, vol. 427 (March, 2004), pp. 696-697
  233. Clark, JS; McLachlan, JS, The stability of forest biodiversity: Commentary, Nature, vol. 427 no. 6976 (February, 2004), pp. 696-697, Springer Nature [doi]
  234. Mohan, JE; Clark, JS; Schlesinger, WH, Genetic variation in germination, growth, and survivorship of red maple in response to subambient through elevated atmospheric CO2, Global Change Biology, vol. 10 no. 2 (February, 2004), pp. 233-247, WILEY [doi]  [abs]
  235. Govindarajan, S; Dietze, M; Agarwal, PK; Clark, JS, A scalable simulator for forest dynamics, in Proceedings of the twentieth annual symposium on Computational geometry, Proceedings of the Annual Symposium on Computational Geometry (January, 2004), pp. 106-115 [doi]  [abs]
  236. Clark, JS; LaDeau, S; Ibanez, I, Fecundity of trees and the colonization-competition hypothesis, Ecological Monographs, vol. 74 no. 3 (January, 2004), pp. 415-442, WILEY, ISSN 0012-9615 [doi]  [abs]
  237. Clark, JS; Bjørnstad, ON, Population time series: Process variability, observation errors, missing values, lags, and hidden states, Ecology, vol. 85 no. 11 (January, 2004), pp. 3140-3150, WILEY [doi]  [abs]
  238. Clark, J.S., Why environmental scientists are becoming Bayesians, Ecology letters, vol. 8 no. 1 (2004), pp. 2--14, Blackwell Science Ltd
  239. Clark, J.S. and Bj{\o}rnstad, O.N., Population time series: process variability, observation errors, missing values, lags, and hidden states, Ecology, vol. 85 no. 11 (2004), pp. 3140--3150, Eco Soc America
  240. Lynch, J.A. and Clark, J.S. and Stocks, B.J., Charcoal production, dispersal, and deposition from the Fort Providence experimental fire: interpreting fire regimes from charcoal records in boreal forests, Canadian Journal of Forest Research, vol. 34 no. 8 (2004), pp. 1642--1656, NRC Research Press
  241. Clark, J.S. and McLachlan, J.S., Neutral theory (communication arising): The stability of forest biodiversity, Nature, vol. 427 no. 6976 (2004), pp. 696--697, Nature Publishing Group
  242. McLachlan, J.S. and Clark, J.S., Reconstructing historical ranges with fossil data at continental scales, Forest Ecology and Management, vol. 197 no. 1 (2004), pp. 139--147, Elsevier
  243. Clark, J.S. and LaDeau, S. and Ibanez, I., Fecundity of trees and the colonization-competition hypothesis, Ecological Monographs, vol. 74 no. 3 (2004), pp. 415--442, Eco Soc America
  244. Mohan, J.E. and Clark, J.S. and Schlesinger, W.H., Genetic variation in germination, growth, and survivorship of red maple in response to subambient through elevated atmospheric CO2, Global Change Biology, vol. 10 no. 2 (2004), pp. 233--247, Blackwell Publishing
  245. Beckage, B; Clark, JS, Seedling survival and growth in Southern Appalachian forests: Does spatial heterogeneity maintain species diversity, Ecology, vol. 84 (July, 2003), pp. 1849-1861
  246. Higgins, SI; Clark, JS; Nathan, R; Hovestadt, T; Schurr, F; Fragoso, JMV; Aguiar, MR; Ribbens, E; Lavorel, S, Forecasting plant migration rates: Managing uncertainty for risk assessment, Journal of Ecology, vol. 91 no. 3 (June, 2003), pp. 341-347, WILEY [doi]  [abs]
  247. Clark, JS; McLachlan, JS, Stability of forest biodiversity., Nature, vol. 423 no. 6940 (June, 2003), pp. 635-638, ISSN 0028-0836 [12789337], [doi]  [abs]
  248. Hille Ris Lambers, J; Clark, JS, Effects of dispersal, shrubs, and density-dependent mortality on seed and seedling distributions in temperate forests, Canadian Journal of Forest Research, vol. 33 no. 5 (May, 2003), pp. 783-795, Canadian Science Publishing [doi]  [abs]
  249. Calder, ; Lavine, KM; Mueller, P; Clark, JS, Incorporating multiple sources of stochasticity in population dynamic models, Ecology, vol. 84 (May, 2003), pp. 1395-1402
  250. Clark, JS, Uncertainty in ecological inference and forecasting. (Special Feature), Ecology, vol. 84 no. 6 (April, 2003), pp. 1370-1381  [abs]
  251. Clark, JS, Uncertainty in population growth rates calculated from demography: the hierarchical approach, Ecology, vol. 84 (March, 2003), pp. 1349-1360
  252. Lynch, JA; Bigelow, B; Clark, JS; Edwards, M; Finney, B, Spatial and temporal variation in boreal fire, Journal of Geophysical Research, vol. 108 (February, 2003), pp. 8152-8169
  253. Lynch, JA; Clark, JS; Bigelow, NH; Edwards, ME; Finney, BP, Geographic and temporal variations in fire history in boreal ecosystems of Alaska, Journal of Geophysical Research: Atmospheres, vol. 108 no. 1 (January, 2003), pp. FFR 8-1 FFR 8-17 [doi]  [abs]
  254. Calder, C; Lavine, M; Müller, P; Clark, JS, Incorporating multiple sources of stochasticity into dynamic population models, Ecology, vol. 84 no. 6 (January, 2003), pp. 1395-1402, WILEY [doi]  [abs]
  255. Clark, JS, Uncertainty in Ecological Inference and Forecasting, Ecology, vol. 84 no. 6 (January, 2003), pp. 1349-1350, WILEY [doi]
  256. Beckage, B; Clark, JS, Seedling survival and growth of three forest tree species: The role of spatial heterogeneity, Ecology, vol. 84 no. 7 (January, 2003), pp. 1849-1861, WILEY [doi]  [abs]
  257. Clark, JS; Lewis, M; McLachlan, JS; HilleRisLambers, J, Estimating population spread: What can we forecast and how well?, Ecology, vol. 84 no. 8 (January, 2003), pp. 1979-1988, WILEY [doi]  [abs]
  258. Clark, JS; Mohan, J; Dietze, M; Ibanez, I, Coexistence: How to identify trophic trade-offs, Ecology, vol. 84 no. 1 (January, 2003), pp. 17-31, WILEY [doi]  [abs]
  259. Clark, JS, Uncertainty and variability in demography and population growth: A hierarchical approach, Ecology, vol. 84 no. 6 (January, 2003), pp. 1370-1381, WILEY [doi]  [abs]
  260. Higgins, SI and Clark, JS and Nathan, R. and Hovestadt, T. and Schurr, F. and Fragoso, JMV and Aguiar, MR and Ribbens, E. and Lavorel, S., Forecasting plant migration rates: managing uncertainty for risk assessment, Journal of Ecology, vol. 91 no. 3 (2003), pp. 341--347, Blackwell Science Ltd
  261. Clark, J.S. and Lewis, M. and McLachlan, J.S. and HilleRisLambers, J., Estimating population spread: what can we forecast and how well?, Ecology, vol. 84 no. 8 (2003), pp. 1979--1988, Eco Soc America
  262. Clark, J.S. and McLachlan, J.S. and others, Stability of forest biodiversity, Nature, vol. 423 no. 6940 (2003), pp. 635--638
  263. Lambers, J.H.R. and Clark, J.S., Effects of dispersal, shrubs, and density-dependent mortality on seed and seedling distributions in temperate forests, Canadian Journal of Forest Research, vol. 33 no. 5 (2003), pp. 783--795, NRC Research Press Ottawa, Canada
  264. Clark, J.S. and Mohan, J. and Dietze, M. and Ibanez, I., Coexistence: how to identify trophic trade-offs, Ecology, vol. 84 no. 1 (2003), pp. 17--31, Eco Soc America
  265. Clark, J.S., Uncertainty in Ecological Inference and Forecasting 1, Ecology, vol. 84 no. 6 (2003), pp. 1349--1350, Eco Soc America
  266. Clark, JS; Bjornstad, O, Population inference from messy data: Errors, missing and hidden states, and lagged responses, Ecology (2003)
  267. Wyckoff, PH; Clark, JS, The relationship between growth and mortality for seven co-occurring tree species in the southern Appalachian Mountains, Journal of Ecology, vol. 90 no. 4 (August, 2002), pp. 604-615, WILEY, ISSN 0022-0477 [doi]  [abs]
  268. Lefcort, H; Aguon, MQ; Bond, KA; Chapman, KR; Chaquette, R; Clark, J; Kornachuk, P; Lang, BZ; Martin, JC, Indirect effects of heavy metals on parasites may cause shifts in snail species compositions., Archives of environmental contamination and toxicology, vol. 43 no. 1 (July, 2002), pp. 34-41, ISSN 0090-4341 [doi]  [abs]
  269. Wyckoff, PH; Clark, JS, Growth and mortality for seven co-occurring tree species in the southern Appalachian Mountains: implications for future forest composition, Journal of Ecology, vol. 90 (June, 2002), pp. 604-615
  270. Lambers, JHR; Clark, JS; Beckage, B, Density-dependent mortality and the latitudinal gradient in species diversity., Nature, vol. 417 no. 6890 (June, 2002), pp. 732-735, ISSN 0028-0836 [12066182], [doi]  [abs]
  271. Lavine, M; Beckage, B; Clark, JS, Statistical modeling of seedling mortality, Journal of Agricultural, Biological, and Environmental Statistics, vol. 7 no. 1 (March, 2002), pp. 21-41, Springer Nature, ISSN 1085-7117 [doi]  [abs]
  272. Clark, JS; Grimm, EC; Donovan, JJ; Fritz, SC; Engstrom, DR; Almendinger, JE, Drought cycles and landscape responses to past aridity on prairies of the northern Great Plains, USA, Ecology, vol. 83 no. 3 (March, 2002), pp. 595-601, WILEY [doi]  [abs]
  273. Lynch, J.A. and Clark, J.S., Fire and vegetation histories in the southern Appalachian Mountains: the historical importance of fire before and after European/American settlement, A report submitted to the George Washington and Jefferson National Forest, Roanoke, Virginia, USA (2002)
  274. Lavine, M. and Beckage, B. and Clark, J.S., Statistical modeling of seedling mortality, Journal of agricultural, biological, and environmental statistics, vol. 7 no. 1 (2002), pp. 21--41, Springer
  275. Clark, J.S. and Grimm, E.C. and Donovan, J.J. and Fritz, S.C. and Engstrom, D.R. and Almendinger, J.E., Drought cycles and landscape responses to past aridity on prairies of the northern Great Plains, USA, Ecology, vol. 83 no. 3 (2002), pp. 595--601, Eco Soc America
  276. Lambers, J.H.R. and Clark, J.S. and Beckage, B. and others, Density-dependent mortality and the latitudinal gradient in species diversity, Nature, vol. 417 no. 6890 (2002), pp. 732--735
  277. Kershaw, AP; Clark, JS; Gill, AM; D’Costa, DM, A history of fire in Australia, Flammable Australia: the fire regimes and biodiversity of a continent (2002), pp. 3-25, Cambridge University Press Cambridge
  278. Lynch, JA; Clark, JS; Bigelow, NH; Edwards, ME; Finney, BP, Geographic and temporal variations in fire history in boreal ecosystems of Alaska, Journal of Geophysical Research, vol. 107 no. D1 (2002), pp. 8152, American Geophysical Union [doi]  [abs]
  279. Clark, JS; Agarwal, PK; Lavin, M, Computation and Uncertainty in Ecological Forecasting., in Proceedings of the 2002 annual national conference on Digital government research, DG.O (2002), pp. 1--1, Digital Government Research Center
  280. Camill, P; Lynch, JA; Clark, JS; Adams, JB; Jordan, B, Changes in biomass, aboveground net primary production, and peat accumulation following permafrost thaw in the boreal peatlands of Manitoba, Canada, Ecosystems, vol. 4 no. 5 (September, 2001), pp. 461-478, Springer Nature, ISSN 1432-9840 [doi]  [abs]
  281. Clark, JS; Carpenter, SR; Barber, M; Collins, S; Dobson, A; Foley, JA; Lodge, DM; Pascual, M; Pielke, R; Pizer, W; Pringle, C; Reid, WV; Rose, KA; Sala, O; Schlesinger, WH; Wall, DH; Wear, D, Ecological forecasts: an emerging imperative., Science (New York, N.Y.), vol. 293 no. 5530 (July, 2001), pp. 657-660, ISSN 0036-8075 [11474103], [doi]  [abs]
  282. Clark, JS; Lewis, M; Horvath, L, Invasion by extremes: population spread with variation in dispersal and reproduction., The American naturalist, vol. 157 no. 5 (May, 2001), pp. 537-554, JSTOR [18707261], [doi]  [abs]
  283. Clark, JS; Lewis, M; Horvath, L, Invasion by extremes: variation in dispersal and reproduction retards population spread, American Naturalist, vol. 157 (May, 2001), pp. 537-554
  284. LaDeau, SL; Clark, JS, Rising CO2 levels and the fecundity of forest trees., Science (New York, N.Y.), vol. 292 no. 5514 (April, 2001), pp. 95-98, ISSN 0036-8075 [11292871], [doi]  [abs]
  285. Clark, J; Horváth, L; Lewis, M, On the estimation of spread rate for a biological population, Statistics and Probability Letters, vol. 51 no. 3 (February, 2001), pp. 225-234, Elsevier BV [doi]  [abs]
  286. Clark, JS; Grimm, EC; Lynch, J; Mueller, PG, Effects of Holocene climate change on the C4 grassland/woodland boundary in the Northern Plains, USA, Ecology, vol. 82 no. 3 (January, 2001), pp. 620-636, WILEY, ISSN 0012-9658 [Gateway.cgi], [doi]  [abs]
  287. Schlesinger, WH; Clark, JS; Mohan, JE; Reid, CD, Global environmental change - Effects on biodiversity, edited by Soule, ME; Orians, GH, CONSERVATION BIOLOGY: RESEARCH PRIORITIES FOR THE NEXT DECADE (January, 2001), pp. 175-223, ISLAND PRESS, ISBN 1-55963-868-0
  288. Clark, J.S. and Carpenter, S.R. and Barber, M. and Collins, S. and Dobson, A. and Foley, J.A. and Lodge, D.M. and Pascual, M. and Pielke Jr, R. and Pizer, W. and others, Ecological forecasts: an emerging imperative, Science, vol. 293 no. 5530 (2001), pp. 657--660, American Association for the Advancement of Science
  289. Clark, J. and Horv{\'a}th, L. and Lewis, M., On the estimation of spread rate for a biological population, Statistics & probability letters, vol. 51 no. 3 (2001), pp. 225--234, Elsevier
  290. Camill, P. and Lynch, J.A. and Clark, J.S. and Adams, J.B. and Jordan, B., Changes in biomass, aboveground net primary production, and peat accumulation following permafrost thaw in the boreal peatlands of Manitoba, Canada, Ecosystems, vol. 4 no. 5 (2001), pp. 461--478, Springer
  291. Clark, JS; Grimm, EC; Lynch, J; Mueller, PG, Effects of Holocene climate change on the C4 grassland/woodland boundary in the Northern Plains, USA, Ecology, vol. 82 no. 3 (2001), pp. 620-636, Eco Soc America, ISSN 0012-9658  [abs]
  292. Clark, JS; Lavine, M, Bayesian statistics: estimating plant demographic parameters, Notes (2001)
  293. Schlesinger, WH; Clark, JS; Moban, JE; Reid, CD, Effec1s on Biodiversi1y, Conservation biology: research priorities for the next decade (2001), pp. 175, Island Press
  294. Camill, P; Clark, JS, Long-term perspectives on lagged ecosystem responses to climate change: Permafrost in boreal peatlands and the grassland/woodland boundary, Ecosystems, vol. 3 no. 6 (December, 2000), pp. 534-544, Springer Nature, ISSN 1432-9840 [doi]  [abs]
  295. Camill, P; Clark, JS, Complex long-term climate responses of North American boreal forest and savanna, Ecosystems, vol. 3 (March, 2000), pp. 534-544
  296. Knoepp, JD; Coleman, DC; Crossley, DA; Clark, JS, Biological indices of soil quality: an ecosystem case study of their use, Forest Ecology and Management, vol. 138 no. 1-3 (January, 2000), pp. 357-368, Elsevier BV, ISSN 0378-1127 [doi]  [abs]
  297. Wyckoff, PH; Clark, JS, Predicting tree mortality from diameter growth: A comparison of maximum likelihood and Bayesian approaches, Canadian Journal of Forest Research, vol. 30 no. 1 (January, 2000), pp. 156-167, Canadian Science Publishing [doi]  [abs]
  298. Beckage, B; Clark, JS; Clinton, BD; Haines, BL, A long-term study of tree seedling recruitment in southern Appalachian forests: The effects of canopy gaps and shrub understories, Canadian Journal of Forest Research, vol. 30 no. 10 (January, 2000), pp. 1617-1631, Canadian Science Publishing, ISSN 0045-5067 [doi]  [abs]
  299. Knoepp, J.D. and Coleman, D.C. and Crossley Jr, DA and Clark, J.S., Biological indices of soil quality: an ecosystem case study of their use, Forest Ecology and Management, vol. 138 no. 1 (2000), pp. 357--368, Elsevier
  300. Beckage, B. and Clark, J.S. and Clinton, B.D. and Haines, B.L., A long-term study of tree seedling recruitment in southern Appalachian forests: the effects of canopy gaps and shrub understories, Canadian Journal of Forest Research, vol. 30 no. 10 (2000), pp. 1617--1631, NRC Research Press Ottawa, Canada
  301. Wyckoff, P.H. and Clark, J.S., Predicting tree mortality from diameter growth: a comparison of maximum likelihood and Bayesian approaches, Canadian Journal of Forest Research, vol. 30 no. 1 (2000), pp. 156--167, NRC Research Press Ottawa, Canada
  302. Clark, JS; Silman, M; Kern, R; Macklin, E; Hillerislambers, J, Seed dispersal near and far: Patterns across temperate and tropical forests, Ecology, vol. 80 no. 5 (January, 1999), pp. 1475-1494, WILEY [doi]  [abs]
  303. Clark, JS; Beckage, B; Camill, P; Cleveland, B; Hillerislambers, J; Lichter, J; McLachlan, J; Mohan, J; Wyckoff, P, Interpreting recruitment limitation in forests., American journal of botany, vol. 86 no. 1 (January, 1999), pp. 1-16, ISSN 0002-9122 [21680341], [doi]  [abs]
  304. Clark, JS and Beckage, B. and Camill, P. and Cleveland, B. and HilleRisLambers, J. and Lichter, J. and McLachlan, J. and Mohan, J. and Wyckoff, P., Interpreting recruitment limitation in forests, American Journal of Botany, vol. 86 no. 1 (1999), pp. 1--16, Botanical Soc America
  305. Clark, J.S. and Silman, M. and Kern, R. and Macklin, E. and HilleRisLambers, J., Seed dispersal near and far: patterns across temperate and tropical forests, Ecology, vol. 80 no. 5 (1999), pp. 1475--1494, Eco Soc America
  306. Clark, JS, Why trees migrate so fast: confronting theory with dispersal biology and the paleorecord., The American naturalist, vol. 152 no. 2 (August, 1998), pp. 204-224, ISSN 0003-0147 [18811386], [doi]  [abs]
  307. Clark, JS; Fastie, C; Hurtt, G; Jackson, ST; Johnson, C; King, G; Lewis, M; Lynch, J; Pacala, S; Prentice, IC; Schupp, EW; Webb III, T; Wyckoff, P, Reid’s Paradox of rapid plant migration, BioScience, vol. 48 no. 1 (June, 1998), pp. 13-24, Oxford University Press (OUP), ISSN 0006-3568 [doi]
  308. Collatz, GJ; Berry, JA; Clark, JS, Effects of climate and atmospheric CO2 partial pressure on the global distribution of C4 grasses: present, past, and future., Oecologia, vol. 114 no. 4 (May, 1998), pp. 441-454, Springer [doi]  [abs]
  309. Camill, P; Clark, JS, Climate change disequilibrium of boreal permafrost peatlands caused by local processes., The American naturalist, vol. 151 no. 3 (March, 1998), pp. 207-222, ISSN 0003-0147 [18811352], [doi]  [abs]
  310. Clark, JS; Macklin, E; Wood, L, Stages and spatial scales of recruitment limitation in southern appalachian forests, Ecological Monographs, vol. 68 no. 2 (January, 1998), pp. 213-235, WILEY [doi]  [abs]
  311. Clark, JS; Lynch, J; Stocks, BJ; Goldammer, JG, Relationships between charcoal particles in air and sediments in west-central Siberia, Holocene, vol. 8 no. 1 (January, 1998), pp. 19-29, SAGE Publications [doi]  [abs]
  312. Camill, P. and Clark, J.S., Climate change disequilibrium of boreal permafrost peatlands caused by local processes, The American Naturalist, vol. 151 no. 3 (1998), pp. 207--222, JSTOR
  313. Clark, J.S. and Fastie, C. and Hurtt, G. and Jackson, S.T. and Johnson, C. and King, G.A. and Lewis, M. and Lynch, J. and Pacala, S. and Prentice, C. and others, Reid's paradox of rapid plant migration, BioScience, vol. 48 no. 1 (1998), pp. 13--24, JSTOR
  314. Clark, J.S. and Macklin, E. and Wood, L., Stages and spatial scales of recruitment limitation in southern Appalachian forests, Ecological Monographs, vol. 68 no. 2 (1998), pp. 213--235, Eco Soc America
  315. Clark, J.S., Why trees migrate so fast: confronting theory with dispersal biology and the paleorecord, The American Naturalist, vol. 152 no. 2 (1998), pp. 204--224, JSTOR
  316. Clark, J.S. and Lynch, J. and Stocks, B.J. and Goldammer, J.G., Relationships between charcoal particles in air and sediments in west-central Siberia, The Holocene, vol. 8 no. 1 (1998), pp. 19--29, Sage Publications
  317. Pitelka, LF; Gardner, RH; Ash, J; Berry, S; Gitay, H; Noble, IR; Saunders, A; Bradshaw, RHW; Brubaker, L; Clark, JS; Davis, MB; Sugita, S; Dyer, JM; Hengeveld, R; Hope, G; Huntley, B; King, GA; Lavorel, S; Mack, RN; Malanson, GP; McGlone, M; Prentice, IC; Rejmanek, M, Plant migration and climate change, AMERICAN SCIENTIST, vol. 85 no. 5 (September, 1997), pp. 464-473, SIGMA XI-SCI RES SOC, ISSN 0003-0996 [Gateway.cgi]
  318. Clark, JS, Facing short-term extrapolation with long-term evidence: Holocene fire in the north-eastern US forests, Journal of Ecology, vol. 85 no. 3 (January, 1997), pp. 377-380, JSTOR [doi]
  319. Pitelka, L.F., Plant Migration and Climate Change: A more realistic portrait of plant migration is essential to predicting biological responses to global warming in a world drastically altered by human activity, American Scientist, vol. 85 no. 5 (1997), pp. 464--473, JSTOR
  320. Clark, J.S., Facing short-term extrapolation with long-term evidence: Holocene fire in the north-eastern US forests, Journal of Ecology (1997), pp. 377--380, British Ecological Society
  321. Clark, JS; Patterson, WA, Background and local charcoal in sediments: scales of fire evidence in the paleorecord, NATO ASI SERIES I GLOBAL ENVIRONMENTAL CHANGE, vol. 51 (1997), pp. 23-48, Springer
  322. Novakov, T; Cachier, H; Clark, JS; Gaudichet, A; Macko, S; Masclet, P, Characterization of particulate products of biomass combustion, NATO ASI SERIES I GLOBAL ENVIRONMENTAL CHANGE, vol. 51 (1997), pp. 117-144, SPRINGER
  323. Clark, JS; Richard, PJH, The role of paleofire in boreal and other cool-coniferous forests, edited by Goldammer, JG; Furyeav, VV, FIRE IN ECOSYSTEMS OF BOREAL EURASIA, vol. 48 (January, 1996), pp. 65-89, KLUWER ACADEMIC PUBL [Gateway.cgi]
  324. Clark, JS; Stocks, BJ; Richard, PJH, Climate implications of biomass burning since the 19th century in eastern North America, Global Change Biology, vol. 2 no. 5 (January, 1996), pp. 433-442, WILEY [doi]  [abs]
  325. Clark, JS; Daniel Royall, P; Chumbley, C, The role of fire during climate change in an eastern deciduous forest at Devil's Bathtub, New York, Ecology, vol. 77 no. 7 (January, 1996), pp. 2148-2166, WILEY [doi]  [abs]
  326. Clark, JS; Royall, PD, Local and regional sediment charcoal evidence for fire regimes in presettlement north-eastern North America, Journal of Ecology, vol. 84 no. 3 (January, 1996), pp. 365-382, JSTOR [doi]  [abs]
  327. Clark, JS; Hussey, T; Royall, PD, Presettlement analogs for quaternary fire regimes in eastern North America, Journal of Paleolimnology, vol. 16 no. 1 (January, 1996), pp. 79-96, Springer Nature [doi]  [abs]
  328. Clark, JS; Hussey, TC, Estimating the mass flux of charcoal from sedimentary records: Effects of particle size, morphology, and orientation, Holocene, vol. 6 no. 2 (January, 1996), pp. 129-144, SAGE Publications, ISSN 0959-6836 [doi]  [abs]
  329. Clark, JS, Testing disturbance theory with long-term data: Alternative life-history solutions to the distribution of events, American Naturalist, vol. 148 no. 6 (January, 1996), pp. 976-996, University of Chicago Press [doi]  [abs]
  330. Clark, J.S., Testing disturbance theory with long-term data: alternative life-history solutions to the distribution of events, American naturalist (1996), pp. 976--996, University of Chicago Press
  331. Clark, J.S. and Hussey, T.C., Estimating the mass flux of charcoal from sedimentary records: effects of particle size, morphology, and orientation, The Holocene, vol. 6 no. 2 (1996), pp. 129--144, Sage Publications
  332. Clark, J.S. and Royall, P.D., Local and regional sediment charcoal evidence for fire regimes in presettlement north-eastern North America, Journal of Ecology (1996), pp. 365--382, JSTOR
  333. Clark, J.S. and Hussey, T. and Royall, P.D., Presettlement analogs for Quaternary fire regimes in eastern North America, Journal of Paleolimnology, vol. 16 no. 1 (1996), pp. 79--96, Springer
  334. Clark, JS and Richard, PJH, The role of paleofire in boreal and other cool-coniferous forests, FORESTRY SCIENCES, vol. 48 (1996), pp. 65--89, KLUWER ACADEMIC PUBLISHERS
  335. Clark, JS, Disturbance and population structure on the shifting mosaic landscape, Ecosystem Management Selected Readings. Springer, New York (1996), pp. 76-98
  336. Clark, JS; Royall, PD, Particle-size evidence for source areas of charcoal accumulation in late holocene sediments of eastern north american lakes, Quaternary Research, vol. 43 no. 1 (January, 1995), pp. 80-89, Cambridge University Press (CUP), ISSN 0033-5894 [doi]  [abs]
  337. Clark, JS; Royall, PD, Transformation of a northern hardwood forest by aboriginal (Iroquois) fire: Charcoal evidence from Crawford Lake, Ontario, Canada, Holocene, vol. 5 no. 1 (January, 1995), pp. 1-9, SAGE Publications [doi]
  338. Clark, JS; Ji Yuan, , Fecundity and dispersal in plant populations: Implications for structure and diversity, American Naturalist, vol. 146 no. 1 (January, 1995), pp. 72-111, University of Chicago Press [doi]
  339. Clark, J.S. and Royall, P.D., Particle-size evidence for source areas of charcoal accumulation in late Holocene sediments of eastern North American lakes, Quaternary Research, vol. 43 no. 1 (1995), pp. 80--89, Elsevier
  340. Clark, J.S. and Royall, P.D., Transformation of a northern hardwood forest by aboriginal (Iroquois) fire: charcoal evidence from Crawford Lake, Ontario, Canada, The Holocene, vol. 5 no. 1 (1995), pp. 1--9, Sage Publications
  341. Clark, J.S. and Ji, Y., Fecundity and dispersal in plant populations: implications for structure and diversity, American Naturalist (1995), pp. 72--111, JSTOR
  342. Collatz, GJ; Clark, JS; Berry, JA, Biochemical bases for the biogeography of C3/C4 grasses and implications for changing distributions since the last glacial maximum, Bulletin of the Ecological Society of America, vol. 76 no. CONF-9507129-- (1995)
  343. Clark, JS, Climate and Indian effects on southern Ontario forests: a reply to Campbell and McAndrews, The Holocene, vol. 5 no. 3 (1995), pp. 371-379, Sage Publications [doi]  [abs]
  344. Clark, JS, Fire in boreal ecosystems of Eurasia: first results of the Bor Forest Island Fire Experiment, Fire Research Campaign Asia-North (FIRESCAN), Journal of World Resources Review (February, 1994), pp. 499-519
  345. Clark, JS; Royall, PD, Pre-industrial particulate emissions and carbon sequestration from biomass burning in North America, Biogeochemistry, vol. 24 no. 1 (January, 1994), pp. 35-51, Springer Nature, ISSN 0168-2563 [doi]  [abs]
  346. Clark, JS; Royall, PD, Pre-industrial particulate emissions and carbon sequestration from biomass burning in North America, Biogeochemistry, vol. 23 (January, 1994), pp. 1-17
  347. Wright, HE; Clark, JS, Charcoal analysis of varved lake sediments, PACT no. 41 (1994), pp. 125-130, Conseil de l'Europe
  348. Clark, JS, Scale relationships in boreal forest, Trends in Ecology and Evolution, vol. 8 (February, 1993), pp. 220
  349. Clark, JS, Fire, climate change, and forest processes during the past 2000 years, Special Paper of the Geological Society of America, vol. 276 (January, 1993), pp. 295-308, Geological Society of America, ISSN 0072-1077 [doi]  [abs]
  350. CLARK, JS; REID, CD, SENSITIVITY OF UNMANAGED ECOSYSTEMS TO GLOBAL CHANGE, edited by Darmstadter, J; Toman, MA, ASSESSING SURPRISES AND NONLINEARITIES IN GREENHOUSE WARMING (January, 1993), pp. 53-89, RESOURCES FOR THE FUTURE INC [Gateway.cgi]
  351. Clark, JS, Fire, climate change, and forest processes during the past 2000 years, Elk Lake, Minnesota: evidence for rapid climate change in the north-central United States, vol. 276 (January, 1993), pp. 295-308 [doi]  [abs]
  352. CLARK, JS, PALEOECOLOGICAL PERSPECTIVES ON MODELING BROAD-SCALE RESPONSES TO GLOBAL CHANGE, edited by Kareiva, PM; Kingsolver, JG; Huey, RB, BIOTIC INTERACTIONS AND GLOBAL CHANGE (January, 1993), pp. 315-332, SINAUER ASSOCIATES, ISBN 0-87893-430-8
  353. Clark, JS, Geological Society of America Special Paper 276 I993, Elk Lake, Minnesota: evidence for rapid climate change in the north-central United States no. 276 (1993), pp. 295, Geological Society of Amer
  354. Clark, JS, Shifting mosaic metapopulation dynamics, Lecture notes in biomathematics, vol. 96 (1993), pp. 224-246, Springer
  355. Clark, JS, Scaling at the population level: Effects of species composition and population structure, Scaling Physiological Processes: Leaf to Globe (1993), pp. 255-281, Academic Press
  356. Clark, JS; Robinson, J, Paleoecology of fire, Wiley, New York (1993), pp. 193-214
  357. Marquet, PA; Fortin, MJ; Pineda, J; Wallin, DO; Clark, J; Wu, Y; Bollens, S; Jacobi, CM; Holt, RD, Ecological and evolutionary consequences of patchiness: a marine--terrestrial perspective, Patch dynamics. Springer-Verlag, New York, New York, USA (1993), pp. 277-304
  358. Clark, JS, Density-independent mortality, density compensation, gap formation, and self-thinning in plant populations, Theoretical Population Biology, vol. 42 no. 2 (January, 1992), pp. 172-198, Elsevier BV, ISSN 0040-5809 [doi]  [abs]
  359. Clark, J.S., Disturbance Climate Change And Forest Rehabilitation, Wali, MK (Ed.). Ecosystem Rehabilitation: Preamble To Sustainable Development, Vol. 2. Ecosystem Analysis And Synthesis. Viii+ 388P. Spb Academic Publishing Bv: The Hague, Netherlands. Illus. Maps. Paper. Isbn, vol. 90 (1992), pp. 165--186
  360. Clark, J.S., Density-independent mortality, density compensation, gap formation, and self-thinning in plant populations, Theoretical Population Biology, vol. 42 no. 2 (1992), pp. 172--198, Elsevier
  361. Morris, LA; Bush, PB; Clark, JS, Ecological impacts and risks associated with forest management, Advances in modern environmental toxicology, vol. 20 (1992), pp. 153-213
  362. Clark, JS, Relationships among individual plant growth and the dynamics of populations and ecosystems, Individual-based models and approaches in ecology. Chapman Hall (1992), pp. 421-454, Chapman and Hall/CRC [doi]  [abs]
  363. Clark, JS, Forest-tree growth rates and probability of gap origin–a comment, Ecology, vol. 72 (March, 1991), pp. 1166-1169
  364. Clark, JS, Disturbance and tree life history on the shifting mosaic landscape, Ecology, vol. 72 no. 3 (January, 1991), pp. 1102-1118, WILEY, ISSN 0012-9658 [doi]  [abs]
  365. Clark, JS, Disturbance and population structure on the shifting mosaic landscape, Ecology, vol. 72 no. 3 (January, 1991), pp. 1119-1137, WILEY, ISSN 0012-9658 [doi]  [abs]
  366. Clark, J.S., Disturbance and population structure on the shifting mosaic landscape, Ecology (1991), pp. 1119--1137, JSTOR
  367. Clark, J.S., Forest-tree growth rates and probability of gap origin: A comment, Ecology, vol. 72 no. 3 (1991), pp. 1166--1169, Ecological Society of America
  368. Clark, J.S., Disturbance and population structure on the shifting mosaic landscape, Ecology (1991), pp. 1119--1137, JSTOR
  369. Clark, JS, Landscape interactions among nitrogen mineralization, species composition, and long-term fire frequency, Biogeochemistry, vol. 11 no. 1 (September, 1990), pp. 1-22, Springer Nature, ISSN 0168-2563 [doi]  [abs]
  370. Clark, JS, Effects of 20th century climate change and fire suppression on forest production and decomposition in northwestern Minnesota, Canadian Journal of Forest Research, vol. 20 (March, 1990), pp. 219-232
  371. Clark, JS, Population and evolutionary consequences of being a coastal plant: long-term evidence from the North Atlantic coasts, Aquatic Science Reviews, vol. 2 (February, 1990), pp. 509-533
  372. Clark, JS, Twentieth-century climate change, fire suppression, and forest production and decomposition in northwestern Minnesota, Canadian Journal of Forest Research, vol. 20 no. 2 (January, 1990), pp. 219-232, Canadian Science Publishing, ISSN 0045-5067 [doi]  [abs]
  373. Clark, JS, Integration of ecological levels: individual plant growth, population mortality and ecosystem processes, Journal of Ecology, vol. 78 no. 2 (January, 1990), pp. 275-299, JSTOR, ISSN 0022-0477 [doi]  [abs]
  374. Clark, JS, Fire and climate change during the last 750 yr in northwestern Minnesota, Ecological Monographs, vol. 60 no. 2 (January, 1990), pp. 135-159, WILEY, ISSN 0012-9615 [doi]  [abs]
  375. Clark, J.S., Evaluating models of climate and forest vegetation, UCAR/Office for Interdisciplinary Earth Studies Boulder, Colorado 1992 (1990), pp. 423
  376. Clark, J.S., Integration of ecological levels: individual plant growth, population mortality and ecosystem processes, The Journal of Ecology (1990), pp. 275--299, JSTOR
  377. Clark, J.S., Landscape interactions among nitrogen mineralization, species composition, and long-term fire frequency, Biogeochemistry, vol. 11 no. 1 (1990), pp. 1--22, Springer
  378. Clark, J.S., Fire and climate change during the last 750 yr in northwestern Minnesota, Ecological Monographs, vol. 60 no. 2 (1990), pp. 135--159, Eco Soc America
  379. Clark, JS, Water balance and fire occurrence during the last 160 years in northwestern Minnesota, Journal of Ecology, vol. 77 (April, 1989), pp. 989-1004
  380. Clark, JS; Merkt, J; Müller, H, Post Glacial fire, vegetation, and cultural history of the northern Alpine forelands, southwest Germany, Journal of Ecology, vol. 77 (February, 1989), pp. 897-925
  381. Clark, JS, Effects of long-term water balances on fire regime, north-western Minnesota, Journal of Ecology, vol. 77 no. 4 (January, 1989), pp. 989-1004, JSTOR [doi]  [abs]
  382. Clark, JS, Ecological disturbance as a renewal process: theory and application to fire history, Oikos, vol. 56 no. 1 (January, 1989), pp. 17-30, JSTOR, ISSN 0030-1299 [doi]  [abs]
  383. Clark, J.S., Ecological disturbance as a renewal process: theory and application to fire history, Oikos (1989), pp. 17--30, JSTOR
  384. Clark, JS and Merkt, J. and Muller, H., Post-glacial fire, vegetation, and human history on the northern alpine forelands, south-western Germany, The Journal of Ecology (1989), pp. 897--925, JSTOR
  385. Clark, JS, The forest is for burning, Natural history (1989)
  386. Clark, JS, Particle motion and the theory of charcoal analysis: Source area, transport, deposition, and sampling, Quaternary Research, vol. 30 no. 1 (January, 1988), pp. 67-80, Cambridge University Press (CUP), ISSN 0033-5894 [doi]  [abs]
  387. Clark, JS, Stratigraphic charcoal analysis on petrographic thin sections: Application to fire history in northwestern Minnesota, Quaternary Research, vol. 30 no. 1 (January, 1988), pp. 81-91, Cambridge University Press (CUP), ISSN 0033-5894 [doi]  [abs]
  388. Clark, JS, Effect of climate change on fire regimes in northwestern Minnesota, Nature, vol. 334 no. 6179 (January, 1988), pp. 233-235, Springer Nature, ISSN 0028-0836 [doi]  [abs]
  389. Clark, J.S., Effect of climate change on fire regimes in northwestern Minnesota (1988), Nature Publishing Group
  390. Clark, J.S., Particle motion and the theory of charcoal analysis: source area, transport, deposition, and sampling, Quaternary Research, vol. 30 no. 1 (1988), pp. 67--80, Elsevier
  391. Clark, J.S., Stratigraphic charcoal analysis on petrographic thin sections: application to fire history in northwestern Minnesota, Quaternary Research, vol. 30 no. 1 (1988), pp. 81--91, Elsevier
  392. Clark, JS, Dynamism in the barrier-beach vegetation of Great South Beach, New York, Ecological Monographs, vol. 56 (May, 1986), pp. 97-126
  393. Clark, JS, Coastal forest tree populations in a changing environment, southeastern Long Island, New York, Ecological Monographs, vol. 56 (March, 1986), pp. 259-277
  394. Clark, JS, Late- Holocene vegetation and coastal processes at a Long Island tidal marsh., Journal of Ecology, vol. 74 no. 2 (January, 1986), pp. 561-578, JSTOR [doi]  [abs]
  395. Clark, JS; Overpeck, JT; Webb, T; Patterson, WA, Pollen stratigraphic correlation and dating of barrier-beach peat sections, Review of Palaeobotany and Palynology, vol. 47 no. 1-2 (January, 1986), pp. 145-168, Elsevier BV, ISSN 0034-6667 [doi]  [abs]
  396. Clark, JS and Overpeck, JT and Webb, T. and Patterson, WA, Pollen stratigraphic correlation and dating of barrier-beach peat sections, Review of palaeobotany and palynology, vol. 47 no. 1 (1986), pp. 145--168, Elsevier
  397. Clark, J.S., Coastal forest tree populations in a changing environment, southeastern Long Island, New York, Ecological Monographs (1986), pp. 259--277, JSTOR
  398. Clark, JS, Dynamism in the barrier-beach vegetation of Great South Beach, New York, Ecological monographs (1986), pp. 98-126, JSTOR
  399. Clark, J.S. and Patterson III, W.A., The development of a tidal marsh: upland and oceanic influences, Ecological Monographs (1985), pp. 189--217, JSTOR
  400. Clark, JS; Patterson, WA, The development of a tidal marsh: upland and oceanic influences, Ecological Monographs, vol. 55 (1985), pp. 189-217
  401. Clark, JS; Patterson, WA, Pollen, Pb-210, and opaque spherules: an integrated approach to dating and sedimentation in the intertidal environment ( Long Island)., Journal of Sedimentary Petrology, vol. 54 no. 4 (January, 1984), pp. 1251-1265, Society for Sedimentary Geology, ISSN 0022-4472 [doi]  [abs]
  402. Clark, JS; Patterson, WA, Pollen, 210Pb, and opaque spherules: an integrated approach to dating and sedimentation in the intertidal environment, Journal of Sedimentary Petrology, vol. 54 (January, 1984), pp. 1249-1263
  403. Clark, J.S. and Patterson III, W.A., Pollen, Pb-210, and opaque spherules: an integrated approach to dating and sedimentation in the intertidal environment, Journal of Sedimentary Research, vol. 54 no. 4 (1984), Society for Sedimentary Geology

Papers Published

  1. Cunningham, E; Tokdar, ST; Clark, JS, A vignette on model-based quantile regression: Analysing excess zero response, in Flexible Bayesian Regression Modelling (January, 2019), pp. 27-64, ISBN 9780128158630 [doi]  [abs]
  2. Schick, RS; Kraus, SD; Rolland, RM; Knowlton, AR; Hamilton, PK; Pettis, HM; Thomas, L; Harwood, J; Clark, JS, Effects of Model Formulation on Estimates of Health in Individual Right Whales (Eubalaena glacialis)., vol. 875 (January, 2016), pp. 977-985 [doi]  [abs]
  3. J.S. Clark, Reid’s Paradox: Tree migration capacity and rapid climate change, in Conservation and Global Change, edited by T. Lovejoy (2004), Yale University Press
  4. Clark, J.S., B. Beckage, J. Hille Ris Lambers, I. Ibanez, S. LaDeau, J. MacLachlan, J. Mohan, and M. Rocca, Dispersal and plant migration, in Encyclopedia of Global Environmental Change, edited by H. Mooney and J. Canadell, vol. 3 (2002), pp. 81-93, Wiley, Chichester, England
  5. Clark, J.S., A. M. Gill, and A. P. Kershaw, Spatial variability in fire regimes: its effects on recent and past vegetation, in Flammable Austrailia: the Fire Regimes and Biodiversity of a Continent, edited by R. A. Bradstock, J.E. Williams, and A. M. Gill (2002), pp. 125-144, Cambridge University Press, Cambridge, England
  6. Kershaw, A. P., Clark, J.S., A. M. gill, and D. M. D'Costa, A history of fire in Australia, in Flammable Australia: the Fire Regimes and Biodiversity of a Continent, edited by R. Bradstock and A.M. Gill (2002), Cambridge University Press, Cambridge, England. (Pages 3-25.)
  7. Schlesinger, W.H., J.S. Clark, J.E. Mohan and C.D. Reid, Global environmental change: effects on biodiversity, in Research Priorities for Conservation Biology, edited by G. Orians and M. Soule (2001), pp. 175-224, Island Press
  8. Clark, J.S. and M. Lavine, Bayesian statistics in ecology, in Design and Analysis of Ecological Experiments, edited by S.M. Scheiner and J. Gurevitch (2001), pp. 327–346, Oxford Univ Press, Oxford, England
  9. Collatz, G.J., J.A. Berry, and J. S. Clark, Effects of climate and atmospheric CO2 partial pressure on the global distribution of C4 plants: past, present, and future, vol. 114 (1998), pp. 441-454
  10. J.S. Clark, Introduction to sediment records of biomass burning and global change, in Sediment Records of Biomass Burning and Global Change, edited by J.S. Clark, H. Cachier , J.G. Goldammer, and B.J. Stocks (1997), pp. 1-9, Springer Verlag, Berlin, Germany
  11. J.S. Clark and W. A. Patterson, Background and local charcoal in sediments: scales of fire evidence in the paleorecord., in Sediment Records of Biomass Burning and Global Change, edited by J.S. Clark, H. Cachier , J.G. Goldammer, and B.J. Stocks (1997), pp. 23-48, Springer Verlag, Berlin, Germany
  12. J.S. Clark, Baseline biomass burning emissions of eastern North America, in Biomass Burning and Global Change, edited by J.S. Levine (1996), pp. 750-757, MIT Press, Cambridge, Massachusetts, USA
  13. J.S. Clark and P. J. H. Richard, The role of paleofire in boreal and other cool-coniferous forests, in Fire in Ecosystem of Boreal Eurasia, edited by J.G. Goldammer and V.V. Furyaev (1996), pp. 65-89, Kluwer, Dordrecht, The Netherlands
  14. J.S. Clark, Terrestrial biotic responses to environmental change and feedbacks to climate, in Climate Change 1995: The Science of Climate Change, edited by J.T. Houghton, L. G. Meira Filho, B.A. Callander, N. Harris, A. Kattenberg, and K. Maskell (1996), pp. 445-482, Intergovernmental Panel on Climate Change, Cambridge University Press, Cambridge, England
  15. J.S. Clark, Fire in ecosystems of boreal Eurasia: the Bor Forest Island Fire Experiment Fire Research Campaign Asia - North (FIRESCAN), in Biomass Burning and Global Change, edited by J.S. Levine (1996), pp. 848-873, MIT Press, Cambridge, Massachusetts, USA
  16. Weiss, K. F., J. G. Goldammer, J. S. Clark, D. A. Livingstone, and M. O. Andreae, Reconstruction of prehistoric fire regimes in East Africa by lake sediment analysis, in Biomass Burning and Global Change, edited by J.S. Levine (1996), MIT Press, Cambridge, Massachusetts, USA
  17. Wright, H. E., and J. S. Clark, Charcoal analysis of varved lake sediments, edited by In S. Hicks, U. Miller , and M. Saarnito, Laminated Sediments and Archaeology, Journal of the European Study Group on Physical, Chemical, Mathematical and Biological Techniques Applied to Archaeology (1995), pp. 125-130, Rixensart, Belgium
  18. J.S. Clark, Climate and Indian effects on southern Ontario forests: forum, vol. 5 (1995), pp. 371-379
  19. J.S. Clark, Sensitivity of forest communities to global climate change, in Biotic Interactions and Global Change, edited by P. Kareiva, J.G. Kingsolver, and R.B. Huey (1993), pp. 315-332, Sinauer, Sunderland, MA
  20. J.S. Clark, Functional groups and ecological consistencies: population perspectives on regional forest dynamics, in Scaling Processes between Leaf and Landscape Levels, edited by J. Ehleringer and C. Field (1993), pp. 255-286, New York, NY
  21. J.S. Clark and J. Robinson, Paleoecology of Fire, in Fire in the Environment: its Ecological, Climatic, and Atmospheric Chemical Importance, edited by P. Crutzen and J. Goldammer (1993), pp. 193-214, Dahlem Conference, Wiley
  22. J.S. Clark, Fire, climate, and forest processes during the last 2000 years, in Ecology and Paleoecology of Elk Lake, edited by W.E. Dean and J.P. Bradbury (1993), pp. 295-308, Geological Society of America
  23. J.S. Clark, Shifting mosaic population dynamics, in Patch Dynamics, S. Levin, T.M. Powell, and J.H. Steele (1993), Springer Verlag, New York, New York
  24. Binkley, D., P. Becker-Heidman, J.S. Clark, P.J. Crutzen, P. Frost, A.M. Gill, A. Granström, F. Mack, J.–C. Menaut, R.W. Wein, and B. van Wilgren, Impacts of fires on ecosystems, in Fire in the Environment: its Ecological, Climatic, and Atmospheric Chemical importance, edited by P. Crutzen and J. Goldammer (1993), pp. 359-374, Dahlem Conference, Wiley
  25. J.S. Clark and Reid, C.D., Sensitivity of unmanaged ecosystems to global change, edited by Darmstader, J. and Toman, M. A., Non-linear Responses to Global Change, Resources for the Future (1993), pp. 53-89, Washington, D.C.
  26. J.S. Clark, Disturbance, climate change, and forest rehabilitation, in Ecosystem Rehabilitation: Preamble to Sustained Development, edited by M. Wali (1992), pp. 165-186, SPB Academic Publishing, The Hague, Netherlands
  27. J.S. Clark, Implications of individual plant growth for landscape patterns of age structure, net primary production, and resource availabilities, edited by D. DeAngelis and L. Gross, Populations, Communities, and Ecosystems: an Individual Perspective (1992), pp. 421-454, Chapman and Hall, New York, NY
  28. J.S. Clark, Validating model predictions of climate and vegetation change, in Earth System Modeling, edited by D. Ojima (1992), pp. 423-440, OIES Global Change Institute, Boulder, CO
  29. Morris, L.A., P.B. Bush, and J.S. Clark, Ecological impacts and risks associated with forest management, in Predicting Ecosystem Risk, edited by J. Cairns, B.R. Niederlehner, and D.R. Orvos (1992), pp. 153-214, Princeton Scientific Publishing Co, Princeton, NJ
  30. J.S. Clark, Ecosystem sensitivity to climate change and complex responses, in Global Change and Life on Earth, edited by R. Wyman (1991), pp. 65-98, Chapman and Hall, New York, New York
  31. J.S. Clark, Clark, J.S. 1989. Forests are for burning, Natural History, vol. 1 (1989), pp. 50-53
  32. J.S. Clark and Patterson, W.A., Dating of the organic deposits, in Geomorphic Development of Long Island’s South Shore Barriers, edited by S.P. Leatherman (1987), National Park Service Technical Report, Boston, Massachusetts
  33. J.S. Clark, Late Holocene vegetation and coastal processes at a Long Island tidal marsh, vol. 74 (1986), pp. 561-578
  34. J.S. Clark, Vegetation and land-use history of the William Floyd Estate, Fire Island National Seashore, New York (1986) (National Park Service, Office of Scientific Studies Technical Report OSS 86-3, Boston, Massachusetts.)
  35. J.S. Clark, Chronologies for recent sediments in coastal environments, in Proceedings of the 12th Nordic Symposium on Sediments, vol. 12 (1984), pp. 76-81, Skallingen, Denmark

Papers Accepted

  1. Way, D.A., S. L. LaDeau, H. R. McCarthy, J. S. Clark, R. Oren, A. C. Finzi and R. B. Jackson, Greater seed production in elevated CO2 is not accompanied by reduced seed quality in Pinus taeda L, Global Change Biology (2009)

Papers Accepted

  1. Govindarajan, S., M. Dietze, P. Agarwal, and J.S. Clark, A scalable model of forest dynamics, Proceedings of the ACM Symposium on Computational Geometry (2005) (in press.)
  2. Gelfand, A., J.S. Clark, and B. Carin, Elements of Bayesian Inference, in Applications of Computational Statistics in the Environmental Sciences: Hierarchical Bayes and MCMC Methods, edited by J.S. Clark and A. Gelfand (2005 under contract), Oxford University Press (in press.)
  3. Lewis, M.A., Neubert, M.G., Caswell, H., Clark, J.S., and Shea, K., A guide to calculating discrete-time invasion rates from data, in Conceptual ecology and invasions biology: Reciprocal approaches to nature, edited by M.W. Cadotte, S.M. McMahon and T.Fukami (2005) (in press.)
  4. J.S. Clark and S.L. LaDeau, Synthesizing ecological experiments and observational data with Hierarchical Bayes, in Applications of Computational Statistics in, edited by J.S. Clark and A. Gelfand (2005), Oxford University (in press.)

Papers Submitted

  1. LaDeau, S.L. and J.S. Clark, Elevated CO2 and tree fecundity: the role of tree size, interannual variability, and population heterogeneity (in review)
  2. Ibáñez, I., J. S. Clark, M. C. Dietze, K. Feeley, M. Hersh, S. LaDeau, A. McBride, N. E. Welch, and M. S. Wolosin, Predicting biodiversity change: Outside the climate envelope, beyond the species-area curve (in review)
  3. Mohan, J.E., J. S. Clark, and W. H. Schlesinger, Long-term CO2 enrichment of an intact forest ecosystem: implications for temperate forest regeneration and succession (in review)
  4. Clark, J.S, Data to ecosystem prediction: complexity, variability, and uncertainty with hierarchical Bayes (2003)
  5. Beckage, B. and J.S. Clark, Do seed and seedling predation contribute to the coexistence of three co-occuring tree species (2003)
  6. Hille Ris Lambers, J., J.S. Clark., and M. Lavine, Seed banking in temperate forests: Implications for recruitment limitation (2003)
  7. Clark, J.S., G. Ferraz, and N. Oguge, Population inference from messy data: Structured, variable, and uncertain demographic change (2003)  [abs]

Books Published

  1. Clark, J.S., D. Bell, M. Dietze, M. Hersh, I. Ibanez, S. LaDeau, S. M. McMahon, C.J.E. Metcalf, E. Moran, L. Pangle, and M. Wolosin., Models for demography of plant populations, in Handbook of Bayesian Analysis, Oxford University Press. (2010)
  2. McMahon, S. M., M. C. Dietze, M. H. Hersh, E. V. Moran, and J. S. Clark, A Predictive Framework to Understand Forest Responses to Global Change, in Year in Ecology and Conservation Biology (2009)
  3. Clark, J.S., D. Bell, M. Dietze, M. Hersh, I. Ibanez, S. LaDeau, S. McMahon, J. Metcalf, E. Moran, L. Pangle, and M. Wolosin, Models for demography of plant populations, in Handbook of Bayesian Analysis (2009)
  4. Clark, J.S., Models for ecological data: an introduction (2007), Princeton University Press Princeton, New Jersey, USA
  5. Clark, J.S., Statistical computation for environmental sciences in R: lab manual for models for ecological data (2007), Princeton University Press
  6. Clark, J.S. and Gelfand, A., Hierarchical modelling for the environmental sciences: statistical methods and applications (2006), Oxford University Press, USA
  7. Clark. J.S. and A. E. Gelfand (eds), Hierarchical Modelling for the Environmental Sciences, in Oxford University Press, Oxford, England. (2006)
  8. Clark, J.S. and Gill, A.M. and Kershaw, A.P., Spatial variability in fire regimes: its effects on recent and past vegetation (2002), Cambridge University Press, Cambridge
  9. Clark, J.S., Sediment records of biomass burning and global change, vol. 51 (1997), Springer Verlag

Other

  1. Clark, J.S., Climate Change, Fire Occurrence, and Forest Influences During the Last 750 Years in Northwestern Minnesota (1988)