John Harer, Professor Emeritus

Professor Harer's primary research is in the use of geometric, combinatorial and computational techniques to study a variety of problems in data analysis, shape recognition, image segmentation, tracking, cyber security, ioT, biological networks and gene expression.

Contact Info:

Office Location:	109 Physic Bldg, Durham, NC 27708
Office Phone:	(919) 660-2845
Email Address:
Web Page:	http://cms.math.duke.edu/harer/?q=home

Education:

Ph.D.	University of California - Berkeley	1979
BS	Haverford College	1974
B.A.	Haverford College	1974

Specialties:

Topology
Geometry
Mathematical Biology
Applied Math

Research Interests: Computational Topology, Computational Biology, Algorithms

Current projects: Biochronicity, Computational Topology, Statistical Topology, Self-Healing Networks, Network Inference, Geometric Image Analysis

Professor Harer's primary research is in the use of geometric, combinatorial and computational techniques to study a variety of problems in data analysis, shape recognition, image segmentation, tracking, brain imaging, biological networks and gene expression.

Areas of Interest:

Computational Biology
Computational Topology
Dynamics on Networks
Algorithms

Keywords:

Algorithms • Automatic Data Processing • Biomass • Chromosome Mapping • Crosses, Genetic • Genome, Plant • Genotype • Image Processing, Computer-Assisted • Imaging, Three-Dimensional • Inbreeding • Models, Biological • Multivariate Analysis • Oryza sativa • Phenotype • Plant Roots • Principal Component Analysis • Quantitative Trait Loci • Quantitative Trait, Heritable • Recombination, Genetic • Reproducibility of Results • Software • Workflow

Curriculum Vitae

Current Ph.D. Students   (Former Students)

• Christopher Traile  
• Hamza Ghadyali  
• Colbert Sesanker  
• Darryl Wade  

Postdocs Mentored

• Henry Adams (2014 - 2015)  
• Francis Motta (2014/12-present)  
• Justin Curry (2014/12-present)  
• Anastasia Deckard (2014/12-present)  
• Ellen Gasparovic (2013 - 2015)  
• Xin Guo (2013 - 2014)  
• Xin Guo (2013 - 2015)  
• Omer Bobrowski (2012 - 2014)  
• Joshua Vogelstein (2012 - 2014)  
• Jurgen Sladeczek (2011 - 2015)  
• Jose' Perea (2011 - 2015)  
• Kevin McGoff (2011 - 2015)  
• Nate Strawn (2011 - 2015)  
• Paul Bendich (January 01, 2011 - present)  
• Chris Topp (2009 - 2011)  
• Anjali Iyer-Pascuzzi (2007 - 2011)  
• Yuriy Mileyko (2008 - 2011)  

Recent Publications   (More Publications)

1. Denny, TN; Andrews, L; Bonsignori, M; Cavanaugh, K; Datto, MB; Deckard, A; DeMarco, CT; DeNaeyer, N; Epling, CA; Gurley, T; Haase, SB; Hallberg, C; Harer, J; Kneifel, CL; Lee, MJ; Louzao, R; Moody, MA; Moore, Z; Polage, CR; Puglin, J; Spotts, PH; Vaughn, JA; Wolfe, CR, Implementation of a Pooled Surveillance Testing Program for Asymptomatic SARS-CoV-2 Infections on a College Campus - Duke University, Durham, North Carolina, August 2-October 11, 2020., Mmwr. Morbidity and Mortality Weekly Report, vol. 69 no. 46 (November, 2020), pp. 1743-1747 [doi]  [abs]
2. Smith, LM; Motta, FC; Chopra, G; Moch, JK; Nerem, RR; Cummins, B; Roche, KE; Kelliher, CM; Leman, AR; Harer, J; Gedeon, T; Waters, NC; Haase, SB, An intrinsic oscillator drives the blood stage cycle of the malaria parasite Plasmodium falciparum., Science (New York, N.Y.), vol. 368 no. 6492 (May, 2020), pp. 754-759 [doi]  [abs]
3. Tralie, CJ; Bendich, P; Harer, J, Multi-Scale Geometric Summaries for Similarity-Based Sensor Fusion, Ieee Aerospace Conference Proceedings, vol. 2019-March (March, 2019), ISBN 9781538668542 [doi]  [abs]
4. Garagić, D; Peskoe, J; Liu, F; Claffey, MS; Bendich, P; Hineman, J; Borggren, N; Harer, J; Zulch, P; Rhodes, BJ, Upstream fusion of multiple sensing modalities using machine learning and topological analysis: An initial exploration, Ieee Aerospace Conference Proceedings, vol. 2018-March (June, 2018), pp. 1-8, IEEE, ISBN 9781538620144 [doi]  [abs]
5. Tralie, CJ; Smith, A; Borggren, N; Hineman, J; Bendich, P; Zulch, P; Harer, J, Geometric Cross-Modal Comparison of Heterogeneous Sensor Data, Proceedings of the 39th Ieee Aerospace Conference, vol. 2018-March (March, 2018), pp. 1-10, IEEE, ISBN 9781538620144 [doi]  [abs]

Recent Grant Support

• Geometric and Topological Methods for Multi-Modal Data Analysis and Fusion, Air Force Office of Scientific Research, FA9550-18-1-0266, 2018/06-2023/06.      
• Geometric and Topological Methods for Multi-Modal Data Analysis and Fusion, Air Force Office of Scientific Research, FA9550-18-1-0266, 2018/06-2023/06.