Publications of Merlise A Clyde     :chronological  combined  bibtex listing:

Papers Published

1. House, L. and Clyde, M. and Huang,Y-C.. "Bayesian Identification of Differential Gene Expression Induced by Metals in Human Bronchial Epithelial Cells." Bayesisan Analysis 1.1 (2005): 105-120. [pdf]
2. Merlise Clyde and E. I. George. "Model Uncertainty." Statistical Science 19 (2004): 81--94. [pdf]
3. Clyde, Merlise. "Discussion of "Frequentist and Bayesian Multiple Testing" by C. Genoviese and L. Wasserman." Bayesian Statistics 7 -- Proceedings of the Seventh Valencia International Meeting (2003).
4. House, Leanna L. and Clyde, Merlise A. and Huang, Yuh-Chin T.. "Bayesian Identification of Differential Gene Expression Induced by Metals in Human Bronchial Epithelial Cells." ASA Proceedings of the Joint Statistical Meetings (2003): 1870--1877.
5. Clyde, Merlise and George, Edward I.. "Comment on ``Wavelet-based Nonparametric Modeling of Hierarchical Functions in Colon Carcinogenesis'' (Pkg: P573-597)." Journal of the American Statistical Association 98.463 (2003): 584--585.
6. Dominici, Francesca and Sheppard, Lianne and Clyde, Merlise. "Health Effects of Air Pollution: A Statistical Review." International Statistical Review 71.2 (2003): 243--276.
7. Clyde, Merlise. "Discussion of "Frequentist and Bayesian Multiple Testing" by C. Genovese and L. Wasserman." Bayesian Statistics 7 -- Proceedings of the Seventh Valencia International Meeting (2003): 145--162.
8. Clyde, Merlise and Chaloner, Kathryn. "Constrained design strategies for improving normal approximations in nonlinear regression problems." Journal of Statistical Planning and Inference 104.1 (2002): 175--196.
9. Clyde, Merlise. "Discussion of ``The Practical Implementation of Bayesian Model Selection''." Model Selection IMS Lecture Notes -- Monograph Series 38 (2001): 117-124.
10. Clyde, Merlise. "Model uncertainty and health effect studies for particulate matter." EnvironMetrics 11.6 (2000): 745--763.
11. Clyde, Merlise and George, Edward I.. "Flexible empirical Bayes estimation for wavelets." Journal of the Royal Statistical Society, Series B, Methodological 62.4 (2000): 681--698.
12. Domonici, Francesca and Parmigiani, Giovanni and Clyde, Merlise. "Conjugate analysis of multivariate normal data incomplete observations." The Canadian Journal of Statistics 28.3 (2000): 533--550.
13. Clyde, Merlise. "Model uncertainty and health effect studies for particulate matter." EnvironMetrics 11.6 (2000): 745--763.
14. Lamon, E. Conrad and Clyde, Merlise A.. "Accounting for model uncertainty in prediction of chlorophyll {\it a\/} in Lake Okeechobee." Journal of Agricultural, Biological, and Environmental Statistics 5.3 (2000): 297--322.
15. Clyde, Merlise. "Bayesian model averaging and model search strategies (with discussion)." Bayesian Statistics 6 -- Proceedings of the Sixth Valencia International Meeting (1999): 157--185.
16. Clyde, M.. "Comment on ``Bayesian model averaging: A tutorial'' (Pkg: p382-417)." Statistical Science 14.4 (1999): 401--404.
17. Paddock, Susan and West, Mike and Young, S. Stanley and Clyde, Merlise. "Mixture models in the exploration of structure-activity relationships in drug design." Case Studies in Bayesian Statistics Volume IV (1999): 339--353.
18. Merlise Clyde. "Comment on ``Bayesian Model Averaging: A Tutorial'' by Hoeting, J.A., Madigan,D., Raftery, A.E., and Volinsky, C.T.." Statist. Sci. 14 (1999): 401--404.
19. MacEachern, Steven N. and Clyde, Merlise and Liu, Jun S.. "Sequential importance sampling for nonparametric Bayes models: The next generation." The Canadian Journal of Statistics 27 (1999): 251--267.
20. Clyde, Merlise A.. "Bayesian model averaging and model search strategies." Bayesian Statistics 6 -- Proceedings of the Sixth Valencia International Meeting (1999): 157--185.
21. Clyde, Merlise and Parmigiani, Giovanni and Vidakovic, Brani. "Multiple shrinkage and subset selection in wavelets." Biometrika 85 (1998): 391--401.
22. Clyde, Merlise A. and Parmigiani, Giovanni. "Protein construct storage: Bayesian variable selection and prediction with mixtures." Journal of Biopharmaceutical Statistics 8 (1998): 431--443.
23. Clyde, Merlise and DeSimone, Heather and Parmigiani, Giovanni. "Comment on ``Accounting for model uncertainty in survival analysis improves predictive performance''." Bayesian Statistics 5 -- Proceedings of the Fifth Valencia International Meeting (1996): 341.
24. Clyde, Merlise and Parmigiani, Giovanni and Vidakovic, Brani. "Using Markov chain Monte Carlo to account for model uncertainty with applications to wavelets." Computing Science and Statistics. Graph -- Image -- Vision. Proceedings of the 28th Symposium on the Interface (1996): 209--218.
25. Clyde, Merlise and DeSimone, Heather and Parmigiani, Giovanni. "Prediction via orthogonalized model mixing." J. Amer. Statist. Assoc. 91 (1996): 1197--1208.
26. Clyde, Merlise and DeSimone, Heather and Parmigiani, Giovanni. "Prediction via orthogonalized model mixing." Journal of the American Statistical Association 91 (1996): 1197--1208.
27. Clyde, Merlise and Chaloner, Kathryn. "The equivalence of constrained and weighted designs in multiple objective design problems." Journal of the American Statistical Association 91 (1996): 1236--1244.
28. Clyde, Merlise A. and DeSimone, Heather and Parmigiani, Giovanni. "A comparison of algorithms for sampling models." ASA Proceedings of the Section on Bayesian Statistical Science (1994): 211--216.
29. Clyde, Merlise and Strauss, David. "Logistic regression for spatial pair-potential models." Spatial Statistics and Imaging 20 (1991): 14--30.
30. "Geographic patterns of variation in allozymes and height growth in white spruce." Canadian Journal of Forest Research (1991): 707--712.
31. "Radial and longitudinal variation in stem diameter increment of lodgepole pine, white spruce, and black spruce: species and crown class differences." Canadian Journal of Forest Research (1987): 1223--1227.
32. "A new computerized system for tree ring measurement and analysis." Forestry Chronicle 63 (1987): 23--27.
33. "Effects of avian seed dispersal on the genetic structure of whitebark pine populations." Evolution 41 (1987): 607--612.

Preprints

1. Liang, F. and Paulo, R. and Molina, G. and Clyde, M. and Berger, J.O.. "Mixtures of g-priors for Bayesian Variable Selection." ISDS Discussion Paper 05-12 (2005). [pdf]  [abs]
2. Clyde, M. and Littman. "Bayesian Adaptive Sampling for Bayesian Variable Selection."   (2004).

Chapters

1. Clyde, M. and H. Lee. "Bagging and the Bayesian bootstrap." Artificial Intelligence and Statistics 2001. Ed. T Jaakkola and T. Richardson Morgan Kaufmann, San Francisco, CA, 2001: 169--174.
2. Clyde, M. A.. "Experimental design: Bayesian designs." International Encyclopedia of the Social & Behavioral Sciences. 2001: 5075--5081.
3. Clyde, Merlise and George, Edward I.. "Empirical Bayes estimation in wavelet nonparametric regression." Bayesian Inference in Wavelet Based Models. Ed. P. M\"uller and B. Vidakovic Springer-Verlag, 1999: 309--322.
4. Paddock, S. West, M., Young, S., and Clyde, M.. "Minxture models in the exploration of structure-activity relationships in drug design." Bayesian Statistics in Science and Engineering: Cases Studies IV. Ed. Gatsonis et al. Springer-Verlag, NY, 1998
5. Clyde, M. and Parigiani. "Orthogonalizations and Prior Distributions for Orthogonalized Model Mixing." Modelling and Prediction: Honoring Seymour Geisser. Ed. Jack C. Lee, Wesley O. Johnson and Arnold Zellner Springer-Verlag, 1996: 206-227.
6. Clyde, Merlise A.. "Bayesian designs for approximate normality." MODA 4 -- Advances in Model--Oriented Data Analysis. Ed. C.P. Kitsos and W.G. M{\"u}ller Physica--Verlag, 1995: 25--35.
7.  "Optimal design for heart defibrillators." Bayesian Statistics in Science and Engineering: Case Studies II. Ed. C. Gatsonis, J. S. Hodges, R. E. Kass, N. D. Singpurwalla Springer--Verlag, 1995: 278--292.
8.  "Discussion of {\em Accounting for Model Uncertainty in Survival Analysis Improves Predictive Performance}, by A.E. Raftery, D.M. Madigan and C.T. Volinski." \em Bayesian Statistics V. Ed. J. O. Berger, J. M. Bernardo, A. P. Dawid and A. F. M. Smith Oxford University Press, 1995
9. Clyde, M.A., Müller, P. and Parmigiani, G.. "Inference and design strategies for a hierarchical logistic regression model." Bayesian Biostatistics. Ed. D.A. Berry and D. Stangl 1995: 297-320.