Publications of Scott C Schmidler    :chronological  combined  bibtex listing:

Papers Published

1. Cooke B, Schmidler SC. "Preserving the Boltzmann Ensemble in Replica-Exchange Molecular Dynamics Simulations." Journal of Chemical Physics 129.16 (2008): 1-17. [164112]
2. Woodard DB, Schmidler SC, Huber M. "Conditions for Rapid Mixing of Parallel and Simulated Tempering on Multimodal Distributions." Annals of Applied Probability (to appear) (2008).
3. Cooke B, Schmidler SC. "Statistical Prediction and Molecular Dynamics Simulation." Biophysical Journal 95.10 (2008): 4497-4511. [4497]
4. Valiaev A, Lim DW, Schmidler SC, Clark RL, Chilkoti A, Zauscher S. "Hydration and Conformational Mechanics of Single End-Tethered Elastin-Like Polypeptides." Journal of the American Chemical Society 130.33 (2008): 10939-10946.
5. Colinas J, Bohrer G, Iordanov B, Schmidler SC, Benfey PN. "Intergenic and Genic Sequence Lengths Have Opposite Relationships with Respect to Gene Expression." PLoS ONE 3.11 (2008): e3670.
6. Schmidler SC, Lucas J, Oas TG. "Statistical Estimation of Statistical Mechanical Models: Helix-Coil Theory and Peptide Helicity Prediction." Journal of Computational Biology 14.10 (2007): 1287-1310.
7. Jiang T, Tomasi C, Schmidler SC. "How to Dispatch Observers to Track an Evolving Boundary." ACM/IEEE International Conference on Distributed Smart Cameras (ICDSC '07), (2007): 305-312.
8. Schmidler SC. "Fast Bayesian Shape Matching Using Geometric Algorithms." Bayesian Statistics 8 (2006): 471-490.
9. S.C. Schmidler. "Discussion of "A Statistical Approach to Modeling Genomic Aberrations in Cancer Cells" by Newton et. al." Bayesian Statistics7 (2003).
10. Schmidler, S.C., Liu, J.S., Brutlag, D.L.. "Bayesian segmentation of protein secondary structure." Journal of Computational Biology 7.1/2 (2000): 233-248.
11. Schmidler, S.C., Liu, J.S., Brutlag, D.L.. "Probabilistic modeling for protein structure prediction." FASEB Journal 13.7 (1999): A1542.
12. Schmidler, S.C., Liu, J.S., Brutlag, D.L.. "Bayesian protein structure prediction." Case Studies in Bayesian Statistics 5 (1999): 363-378.
13. Wu, T.D., Schmidler, S.C., Hastie, T., Brutlag, D.L.. "Regression analysis of multiple protein structures." Journal of Computational Biology 5.3 (1998): 597-607.
14. Wu, T.D., Hastie, T., Schmidler, S.C., Brutlag, D.L.. "Regression analysis of multiple protein structures." Proceedings Second Annual Conference on Computational Molecular Biology (RECOMB '98) (1998): 276-284.
15. Wu, T.D., Schmidler, S.C. Hastie, T., Brutlag, D.L.. "Modeling and superposition of multiple protein structures using affine transformations: analysis of the globins." Pacific Symposium on Biocomputing '98 (1998): 507-518.
16. Lansky, A., Friedman, M., Getoor, L., Schmidler, S., Short, N.. "The COLLAGE/khoros Link: Planning for Image Processing Tasks." Proceedings of the 1995 AAAI Spring Symposium on Integrated Planning Architectures (1995).