Publications of Philip N Benfey     :chronological  by type  bibtex listing:

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  1. KL Gallagher, PN Benfey, Both the conserved GRAS domain and nuclear localization are required for SHORT-ROOT movement., The Plant journal : for cell and molecular biology (December, 2008)  [abs].
  2. TA Long, SM Brady, PN Benfey, Systems approaches to identifying gene regulatory networks in plants., Annual review of cell and developmental biology, United States, vol. 24 (November, 2008), pp. 81-103  [abs].
  3. J Colinas, SC Schmidler, G Bohrer, B Iordanov, PN Benfey, Intergenic and genic sequence lengths have opposite relationships with respect to gene expression., PLoS ONE, United States, vol. 3 no. 11 (November, 2008), pp. e3670  [abs].
  4. AS Iyer-Pascuzzi, PN Benfey, Transcriptional networks in root cell fate specification., Biochimica et biophysica acta (October, 2008)  [abs].
  5. I De Smet, V Vassileva, B De Rybel, MP Levesque, W Grunewald, D Van Damme, G Van Noorden, M Naudts, G Van Isterdael, R De Clercq, JY Wang, N Meuli, S Vanneste, J Friml, P Hilson, G Jürgens, GC Ingram, D Inzé, PN Benfey, T Beeckman, Receptor-like kinase ACR4 restricts formative cell divisions in the Arabidopsis root., Science (New York, N.Y.), United States, vol. 322 no. 5901 (October, 2008), pp. 594-7  [abs].
  6. B Chaudhuri, F Hörmann, S Lalonde, SM Brady, DA Orlando, P Benfey, WB Frommer, Protonophore- and pH-insensitive glucose and sucrose accumulation detected by FRET nanosensors in Arabidopsis root tips., The Plant journal : for cell and molecular biology (September, 2008)  [abs].
  7. K Swarup, E Benková, R Swarup, I Casimiro, B Péret, Y Yang, G Parry, E Nielsen, I De Smet, S Vanneste, MP Levesque, D Carrier, N James, V Calvo, K Ljung, E Kramer, R Roberts, N Graham, S Marillonnet, K Patel, JD Jones, CG Taylor, DP Schachtman, S May, G Sandberg, P Benfey, J Friml, I Kerr, T Beeckman, L Laplaze, MJ Bennett, The auxin influx carrier LAX3 promotes lateral root emergence., Nature cell biology, England, vol. 10 no. 8 (August, 2008), pp. 946-54  [abs].
  8. JJ Petricka, PN Benfey, Root layers: complex regulation of developmental patterning., Current opinion in genetics & development, England, vol. 18 no. 4 (August, 2008), pp. 354-61  [abs].
  9. JR Dinneny, TA Long, JY Wang, JW Jung, D Mace, S Pointer, C Barron, SM Brady, J Schiefelbein, PN Benfey, Cell identity mediates the response of Arabidopsis roots to abiotic stress., Science (New York, N.Y.), United States, vol. 320 no. 5878 (May, 2008), pp. 942-5  [abs].
  10. PN Benfey, T Mitchell-Olds, From genotype to phenotype: systems biology meets natural variation., Science (New York, N.Y.), United States, vol. 320 no. 5875 (April, 2008), pp. 495-7  [abs].
  11. JR Dinneny, PN Benfey, Plant stem cell niches: standing the test of time., Cell, United States, vol. 132 no. 4 (February, 2008), pp. 553-7  [abs].
  12. J Colinas, SC Schmidler, G Bohrer, B Iordanov, PN Benfey, Intergenic and genic sequence lengths have opposite relationships with respect to gene expression., PLoS ONE, United States, vol. 3 no. 11 (2008), pp. e3670  [abs].
  13. SM Brady, DA Orlando, JY Lee, JY Wang, J Koch, JR Dinneny, D Mace, U Ohler, PN Benfey, A high-resolution root spatiotemporal map reveals dominant expression patterns., Science (New York, N.Y.), United States, vol. 318 no. 5851 (November, 2007), pp. 801-6  [abs].
  14. H Cui, MP Levesque, T Vernoux, JW Jung, AJ Paquette, KL Gallagher, JY Wang, I Blilou, B Scheres, PN Benfey, An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants., Science (New York, N.Y.), United States, vol. 316 no. 5823 (April, 2007), pp. 421-5  [abs].
  15. JS Weitz, PN Benfey, NS Wingreen, Evolution, interactions, and biological networks., PLoS biology, United States, vol. 5 no. 1 (January, 2007), pp. e11 .
  16. SM Brady, S Song, KS Dhugga, JA Rafalski, PN Benfey, Combining expression and comparative evolutionary analysis. The COBRA gene family., Plant physiology, United States, vol. 143 no. 1 (January, 2007), pp. 172-87  [abs].
  17. TA Long, PN Benfey, Transcription factors and hormones: new insights into plant cell differentiation., Curr Opin Cell Biol, United States, vol. 18 no. 6 (December, 2006), pp. 710-4 (ISSN: HASH(0xba1eac8).)  [abs].
  18. SM Brady, TA Long, PN Benfey, Unraveling the dynamic transcriptome., Plant Cell, United States, vol. 18 no. 9 (September, 2006), pp. 2101-11 (ISSN: HASH(0xc8fb798).) .
  19. DL Mace, JY Lee, RW Twigg, J Colinas, PN Benfey, U Ohler, Quantification of transcription factor expression from Arabidopsis images., Bioinformatics, England, vol. 22 no. 14 (July, 2006), pp. e323-31 (ISSN: HASH(0xbff91c0).)  [abs].
  20. MP Levesque, T Vernoux, W Busch, H Cui, JY Wang, I Blilou, H Hassan, K Nakajima, N Matsumoto, JU Lohmann, B Scheres, PN Benfey, Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis., PLoS Biol, United States, vol. 4 no. 5 (May, 2006), pp. e143 (ISSN: HASH(0xd0864d4).)  [abs].
  21. JY Lee, J Colinas, JY Wang, D Mace, U Ohler, PN Benfey, Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots., Proc Natl Acad Sci U S A, United States, vol. 103 no. 15 (April, 2006), pp. 6055-60 (ISSN: HASH(0xc0db758).)  [abs].
  22. Dinneny, J. and P.N. Benfey, Studying root development using a genomic approach, in Root Development (2006) .
  23. Lee, J-Y and P.N. Benfey, Root Apical Meristems, in Encyclopedia of Life Sciences (2006) .
  24. J Friml, P Benfey, E Benková, M Bennett, T Berleth, N Geldner, M Grebe, M Heisler, J Hejátko, G Jürgens, T Laux, K Lindsey, W Lukowitz, C Luschnig, R Offringa, B Scheres, R Swarup, R Torres-Ruiz, D Weijers, E Zazímalová, Apical-basal polarity: why plant cells don't stand on their heads., Trends Plant Sci, England, vol. 11 no. 1 (December, 2005), pp. 12-4 .
  25. JR Dinneny, PN Benfey, Stem Cell Research Goes Underground: The RETINOBLASTOMA-RELATED Gene in Root Development., Cell, vol. 123 no. 7 (December, 2005), pp. 1180-2 (ISSN: HASH(0x9fb5ba8).)  [abs].
  26. J Lim, JW Jung, CE Lim, MH Lee, BJ Kim, M Kim, WB Bruce, PN Benfey, Conservation and diversification of SCARECROW in maize., Plant Mol Biol, Netherlands, vol. 59 no. 4 (November, 2005), pp. 619-30 (ISSN: HASH(0xabdec88).)  [abs].
  27. K Birnbaum, JW Jung, JY Wang, GM Lambert, JA Hirst, DW Galbraith, PN Benfey, Cell type-specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines., Nat Methods, United States, vol. 2 no. 8 (August, 2005), pp. 615-9 (ISSN: HASH(0xbd9ee98).) .
  28. T Vernoux, PN Benfey, Signals that regulate stem cell activity during plant development., Curr Opin Genet Dev, England, vol. 15 no. 4 (August, 2005), pp. 388-94 (ISSN: HASH(0xbb7dafc).)  [abs].
  29. T Nawy, JY Lee, J Colinas, JY Wang, SC Thongrod, JE Malamy, K Birnbaum, PN Benfey, Transcriptional profile of the Arabidopsis root quiescent center., Plant Cell, United States, vol. 17 no. 7 (July, 2005), pp. 1908-25 (ISSN: HASH(0xbb8d460).)  [abs].
  30. AJ Paquette, PN Benfey, Maturation of the ground tissue of the root is regulated by gibberellin and SCARECROW and requires SHORT-ROOT., Plant Physiol, United States, vol. 138 no. 2 (June, 2005), pp. 636-40 (ISSN: HASH(0xbb8d9c8).) .
  31. JY Lee, M Levesque, PN Benfey, High-throughput RNA isolation technologies. New tools for high-resolution gene expression profiling in plant systems., Plant Physiol, United States, vol. 138 no. 2 (June, 2005), pp. 585-90 (ISSN: HASH(0xba63ecc).) .
  32. PN Benfey, Developmental networks., Plant Physiol, United States, vol. 138 no. 2 (June, 2005), pp. 548-9 (ISSN: HASH(0xb90b23c).) .
  33. F Roudier, AG Fernandez, M Fujita, R Himmelspach, GH Borner, G Schindelman, S Song, TI Baskin, P Dupree, GO Wasteneys, PN Benfey, COBRA, an Arabidopsis extracellular glycosyl-phosphatidyl inositol-anchored protein, specifically controls highly anisotropic expansion through its involvement in cellulose microfibril orientation., Plant Cell, United States, vol. 17 no. 6 (June, 2005), pp. 1749-63 (ISSN: HASH(0xc23db64).)  [abs].
  34. KL Gallagher, PN Benfey, Not just another hole in the wall: understanding intercellular protein trafficking., Genes Dev, United States, vol. 19 no. 2 (January, 2005), pp. 189-95 (ISSN: HASH(0xb7dca0c).)  [abs].
  35. Birnbaum, K., Shasha, D.E., Wang, J.Y., Jung, J., Lambert, G.M., Galbraith, D.W. and P.N. Benfey, A gene expression map of the Arabidopsis root, Science, vol. 302 (December, 2003), pp. 1956-60 .
  36. Brenner ED, Stevenson DW, McCombie RW, Katari MS, Rudd SA, Mayer KF, Palenchar PM, Runko SJ, Twigg RW, Dai G, Martienssen RA, Benfey PN, Coruzzi GM, Expressed sequence tag analysis in Cycas, the most primitive living seed plant, Genome Biology, vol. 4 (2003), pp. R78 .
  37. P.N. Benfey, Molecular biology: microRNA is here to stay, Nature, vol. 425( (2003), pp. 244-245 (Prize for one of three best News and Views in 2003.) .
  38. Levesque M, Shasha D, Kim W, Surette MG and P.N. Benfey, Trait-to-gene: a computational method for predicting the function of uncharacterized genes, Current Biology, vol. 13 (2003), pp. 129-133 .
  39. Birnbaum, K., DeSalle, R., Peters, C.M. and P.N. Benfey, Integrating gene flow, crop biology, and farm management in the on-farm conservation of avocado (Persea americana, Lauraceae)., American Journal of Botany, vol. 90 (2003), pp. 1619-1627 .
  40. Roudier, F., Schindelman, G, DeSalle, R. and P.N. Benfey, The COBRA family of putative GPI-anchored proteins in Arabidopsis: a new fellowship in expansion., Plant Physiology, vol. 130 no. 2 (December, 2002), pp. 538-48. .
  41. Muller S, Fuchs E, Ovecka M, Wysocka-Diller J, Benfey P.N, and MT Hauser, Two new loci, PLEIADE and HYADE, implicate organ-specific regulation of cytokinesis in Arabidopsis., Plant Physiol., vol. 130 no. 1 (December, 2002), pp. 312-24 .
  42. Colinas J, Birnbaum K, and P.N. Benfey, Using cauliflower to find conserved non-coding regions in Arabidopsis., Plant Physiol., vol. 129 no. 2 (December, 2002), pp. 451-4 .
  43. P.N. Benfey, Auxin action: slogging out of the swamp, Curr Biol., vol. 12 no. 11 (December, 2002), pp. R389-90 .
  44. Nakajima, K and P.N. Benfey, Signaling in and out: control of cell division and differentiation in the shoot and root., Plant Cell, vol. 14 (December, 2002), pp. S265-76 .
  45. Birnbaum, K., Benfey, P.N., Peters, C.M., and R. DeSalle, MANAGEDPOP: a computer simulation to project allelic diversity in managed populations with overlapping generations, Molecular Ecology Notes, vol. 2 (January, 2002), pp. 615-617 .

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