Publications of David R McClay     :recent first  combined  bibtex listing:

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Papers Published

  1. Wessel, G.M., L. Berg, D. Adelson, G. Cannon, and D.R. McClay, A molecularanalysis of hyalin, the major component of the cortical granules that is secreted at fertilization of the sea urchin egg., Dev. Biol, vol. 193 (December, 1983), pp. 115-126 .
  2. D.R. McClay, Peterson, R., Range, R., Winter-Vann, A., and Ferkowicz, M., micromere induction signal is activated by B-catenin and acts through Notch to initiate specification of secondary mesenchyme cells in the sea urchin embryo, Development, vol. 127 (2000), pp. 5113-5122 .
  3. Angerer, LM, D Oleksyn, CY Logan DR McClay, L Dale, and RC Angerer, A BMP pathway regulates cell fate allocation along the sea urchin animal-vegetal embryonic axis, Development, vol. 127 (2000), pp. 1105-1114 .
  4. Gross, JM and McClay DR, The Role of Brachyruy (T) During Gastrulations Movement in the Sea Urchin, Lytechinus variegatus, Developmental Biology, vol. 239 (2001), pp. 232-247 .
  5. EH Davidson, JP Rast, P Oliveri, RA Cameron, A Ransick, Ch-H Yuh, C Calestani, G Amore, V Hinman, T Minokawa, C Arenas-Mena, O Otim, CT Brown, C Livi, P-y Lee, R. Revilla, PJC Clarke, DR McClay, MI Arnone, L Rowan, LE Hood, and H Bolouri, A Provisional Regulatory Gene Network for Specification of Endomesoderm in the Sea Urchin Embryo, Dev. Biol., vol. 246 (2002), pp. 162-190 .
  6. E.H. Davidson, J.P. Rast, P.Oliveri, R.A. Cameron, A. Ransick, C.Calestani, Ch.-H.Yuh, T. Minokawa, G. Amore, V. Hinman, C. Arenas-Mena, O.Otim, C.T. Brown, C. Livi, P.-y. Lee, R. Revilla, A.G. Rust, Z J. Pan, M. Schilstra, P.J. Clark,, A genomic network for Development., Science, vol. 295 (December, 2002), pp. 1669-1678 .
  7. Gross, J.M, R.E. Peterson and D.R. McClay, LvTbx2/3, a T-box Family Transcription Factor Involved in Formation of the Oral/Aboral Axis of the Sea Urchin Embryo, Development, vol. 130 (2003), pp. 1989-1999 .
  8. R.E. Peterson and D.R. McClay, Primary mesenchyme cell patterning during the early stages following ingression, Dev. Biol., vol. 254 (2003), pp. 68-78 .
  9. E. H. Davidson, D. R. McClay and L. Hood, Regulatory gene networks and the properties of the developmental process, PNAS, vol. 100 (2003), pp. 1475-1480 .
  10. Oliveri, P. E.H. Davidson, and D.R. McClay, Activation of pmar1 controls specification of micromeres in the sea urchin embryo, Dev. Biol, vol. 258 (2003), pp. 25-38 .
  11. Amore, G., R.G. Yavrouian, K.J. Peterson, A. Ransick, D.R. McClay, and E.H. Davidson, Spdeadringer, a sea urchin embryo gene required separately in skeletogenic and oral ectoderm regulatory gene networks, Dev. Biol., vol. 261 (2003), pp. 55-81 .
  12. DR McClay, Methods for embryo dissociation and analysis of cell adhesion., Methods in cell biology, United States, vol. 74 (2004), pp. 311-29 .
  13. McClay, D.R., Gross, J., Peterson, R. and C. Bradham, Mechanism of gastrulation in the Sea urchin., in “Gastrulation", edited by Claudio Stern (2004), pp. 123-138., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. (Invited review..) .
  14. McClay, D.R, Range, R. and Sherwood, D.R, The Notch pathway in gastrulation., in “Gastrulation”, edited by Claudio Stern (2004), pp. . 539-548, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY .
  15. Bradham, C.A., E. Miranda, and D. R. McClay, PI3K Activity is Required for Skeletogenesis in Sea Urchin Embryos., Dev Dyn, vol. 229 (2004), pp. 713-721 .
  16. D.R. McClay, Methods for embryo dissociation and for studying cell associations using sea urchin material, Methods of Cell Biology, vol. 74 (2004), pp. 311-329 .
  17. Wikramanayake, A.H., R. Peterson, J. Chen, L. Huang, D.R. McClay, W.H. Klein, Selective expression of Wnt8 in vegetal cells of the early sea urchin embryo mediates endomesoderm specification in a nuclear beta-catenin-dependent manner, Genesis, vol. 39 (2004), pp. 194-205 .
  18. Otim O, Amore G, Minokawa T, McClay DR, Davidson EH., SpHnf6, a transcription factor that executes multiple functions in sea urchin embryogenesis., Dev. Biol., vol. 273 (2004), pp. 226-243 .
  19. KL Bastress, HC Etchevers, AL Boyles, EC Melvin, DG Siegel, FL Graham, S Slifer, DS Enterline, TM George, M Vekemans, D McClay, AG Bassuk, JA Kessler, E Linney, JR Gilbert, M C Speer, SNPs in NCAM1 may be associated with human neural tube defects, Submitted (2004) .
  20. RC Range, JM Venuti, DR McClay, LvGroucho and nuclear beta-catenin functionally compete for Tcf binding to influence activation of the endomesoderm gene regulatory network in the sea urchin embryo., Developmental biology, United States, vol. 279 no. 1 (March, 2005), pp. 252-67  [abs].
  21. RE Peterson, DR McClay, A Fringe-modified Notch signal affects specification of mesoderm and endoderm in the sea urchin embryo., Developmental biology, United States, vol. 282 no. 1 (June, 2005), pp. 126-37  [abs].
  22. KL Deak, AL Boyles, HC Etchevers, EC Melvin, DG Siegel, FL Graham, SH Slifer, DS Enterline, TM George, M Vekemans, D McClay, AG Bassuk, JA Kessler, E Linney, JR Gilbert, MC Speer, SNPs in the neural cell adhesion molecule 1 gene (NCAM1) may be associated with human neural tube defects., Human genetics, Germany, vol. 117 no. 2-3 (July, 2005), pp. 133-42  [abs].
  23. CA Bradham, DR McClay, p38 MAPK is essential for secondary axis specification and patterning in sea urchin embryos., Development (Cambridge, England), England, vol. 133 no. 1 (January, 2006), pp. 21-32  [abs].
  24. J Croce, L Duloquin, G Lhomond, DR McClay, C Gache, Frizzled5/8 is required in secondary mesenchyme cells to initiate archenteron invagination during sea urchin development., Development (Cambridge, England), England, vol. 133 no. 3 (February, 2006), pp. 547-57  [abs].
  25. JC Croce, DR McClay, The canonical Wnt pathway in embryonic axis polarity., Seminars in cell & developmental biology, England, vol. 17 no. 2 (April, 2006), pp. 168-74  [abs].
  26. C Bradham, DR McClay, p38 MAPK in development and cancer., Cell cycle (Georgetown, Tex.), United States, vol. 5 no. 8 (April, 2006), pp. 824-8  [abs].
  27. WS Beane, JM Gross, DR McClay, RhoA regulates initiation of invagination, but not convergent extension, during sea urchin gastrulation., Developmental biology, United States, vol. 292 no. 1 (April, 2006), pp. 213-25  [abs].
  28. Sea Urchin Genome Sequencing Consortium, E Sodergren, GM Weinstock, EH Davidson, RA Cameron, RA Gibbs, RC Angerer, LM Angerer, MI Arnone, DR Burgess, RD Burke, JA Coffman, M Dean, MR Elphick, CA Ettensohn, KR Foltz, A Hamdoun, RO Hynes, WH Klein, W Marzluff, DR McClay, RL Morris, A Mushegian, JP Rast, LC Smith, MC Thorndyke, VD Vacquier, GM Wessel, G Wray, L Zhang, CG Elsik, O Ermolaeva, W Hlavina, G Hofmann, P Kitts, MJ Landrum, AJ Mackey, D Maglott, G Panopoulou, AJ Poustka, K Pruitt, V Sapojnikov, X Song, A Souvorov, V Solovyev, Z Wei, CA Whittaker, K Worley, KJ Durbin, Y Shen, O Fedrigo, D Garfield, R Haygood, A Primus, R Satija, T Severson, ML Gonzalez-Garay, AR Jackson, A Milosavljevic, M Tong, CE Killian, BT Livingston, FH Wilt, N Adams, R Bellé, S Carbonneau, R Cheung, P Cormier, B Cosson, J Croce, A Fernandez-Guerra, AM Genevière, M Goel, H Kelkar, J Morales, O Mulner-Lorillon, AJ Robertson, JV Goldstone, B Cole, D Epel, B Gold, ME Hahn, M Howard-Ashby, M Scally, JJ Stegeman, EL Allgood, J Cool, KM Judkins, SS McCafferty, AM Musante, RA Obar, AP Rawson, BJ Rossetti, IR Gibbons, MP Hoffman, A Leone, S Istrail, SC Materna, MP Samanta, V Stolc, W Tongprasit, Q Tu, KF Bergeron, BP Brandhorst, J Whittle, K Berney, DJ Bottjer, C Calestani, K Peterson, E Chow, QA Yuan, E Elhaik, D Graur, JT Reese, I Bosdet, S Heesun, MA Marra, J Schein, MK Anderson, V Brockton, KM Buckley, AH Cohen, SD Fugmann, T Hibino, M Loza-Coll, AJ Majeske, C Messier, SV Nair, Z Pancer, DP Terwilliger, C Agca, E Arboleda, N Chen, AM Churcher, F Hallböök, GW Humphrey, MM Idris, T Kiyama, S Liang, D Mellott, X Mu, G Murray, RP Olinski, F Raible, M Rowe, JS Taylor, K Tessmar-Raible, D Wang, KH Wilson, S Yaguchi, T Gaasterland, BE Galindo, HJ Gunaratne, C Juliano, M Kinukawa, GW Moy, AT Neill, M Nomura, M Raisch, A Reade, MM Roux, JL Song, YH Su, IK Townley, E Voronina, JL Wong, G Amore, M Branno, ER Brown, V Cavalieri, V Duboc, L Duloquin, C Flytzanis, C Gache, F Lapraz, T Lepage, A Locascio, P Martinez, G Matassi, V Matranga, R Range, F Rizzo, E Röttinger, W Beane, C Bradham, C Byrum, T Glenn, S Hussain, G Manning, E Miranda, R Thomason, K Walton, A Wikramanayke, SY Wu, R Xu, CT Brown, L Chen, RF Gray, PY Lee, J Nam, P Oliveri, J Smith, D Muzny, S Bell, J Chacko, A Cree, S Curry, C Davis, H Dinh, S Dugan-Rocha, J Fowler, R Gill, C Hamilton, J Hernandez, S Hines, J Hume, L Jackson, A Jolivet, C Kovar, S Lee, L Lewis, G Miner, M Morgan, LV Nazareth, G Okwuonu, D Parker, LL Pu, R Thorn, R Wright, The genome of the sea urchin Strongylocentrotus purpuratus., Science (New York, N.Y.), United States, vol. 314 no. 5801 (November, 2006), pp. 941-52  [abs].
  29. P Oliveri, KD Walton, EH Davidson, DR McClay, Repression of mesodermal fate by foxa, a key endoderm regulator of the sea urchin embryo., Development (Cambridge, England), England, vol. 133 no. 21 (November, 2006), pp. 4173-81  [abs].
  30. CA Byrum, KD Walton, AJ Robertson, S Carbonneau, RT Thomason, JA Coffman, DR McClay, Protein tyrosine and serine-threonine phosphatases in the sea urchin, Strongylocentrotus purpuratus: identification and potential functions., Developmental biology, United States, vol. 300 no. 1 (December, 2006), pp. 194-218  [abs].
  31. F Lapraz, E Röttinger, V Duboc, R Range, L Duloquin, K Walton, SY Wu, C Bradham, MA Loza, T Hibino, K Wilson, A Poustka, D McClay, L Angerer, C Gache, T Lepage, RTK and TGF-beta signaling pathways genes in the sea urchin genome., Developmental biology, United States, vol. 300 no. 1 (December, 2006), pp. 132-52  [abs].
  32. JC Croce, SY Wu, C Byrum, R Xu, L Duloquin, AH Wikramanayake, C Gache, DR McClay, A genome-wide survey of the evolutionarily conserved Wnt pathways in the sea urchin Strongylocentrotus purpuratus., Developmental biology, United States, vol. 300 no. 1 (December, 2006), pp. 121-31  [abs].
  33. KD Walton, JC Croce, TD Glenn, SY Wu, DR McClay, Genomics and expression profiles of the Hedgehog and Notch signaling pathways in sea urchin development., Developmental biology, United States, vol. 300 no. 1 (December, 2006), pp. 153-64  [abs].
  34. CA Bradham, KR Foltz, WS Beane, MI Arnone, F Rizzo, JA Coffman, A Mushegian, M Goel, J Morales, AM Geneviere, F Lapraz, AJ Robertson, H Kelkar, M Loza-Coll, IK Townley, M Raisch, MM Roux, T Lepage, C Gache, DR McClay, G Manning, The sea urchin kinome: a first look., Developmental biology, United States, vol. 300 no. 1 (December, 2006), pp. 180-93  [abs].
  35. WS Beane, E Voronina, GM Wessel, DR McClay, Lineage-specific expansions provide genomic complexity among sea urchin GTPases., Developmental biology, United States, vol. 300 no. 1 (December, 2006), pp. 165-79  [abs].
  36. AJ Robertson, J Croce, S Carbonneau, E Voronina, E Miranda, DR McClay, JA Coffman, The genomic underpinnings of apoptosis in Strongylocentrotus purpuratus., Developmental biology, United States, vol. 300 no. 1 (December, 2006), pp. 321-34  [abs].
  37. Wu, S.-Y., Ferkowicz, M., and D.R. McClay, Ingression of primary mesenchyme cells of the sea urchin embryo: a precisely timed epithelial mesenchymal transition, Embryology Today, Reviews, vol. 81 (2007), pp. 241-252 .
  38. Bradham, C., and D.R. McClay, Secondary axis specification in the sea urchin., Signal Transduction, vol. 7 (2007), pp. 181-190 .
  39. SY Wu, DR McClay, The Snail repressor is required for PMC ingression in the sea urchin embryo., Development (Cambridge, England), England, vol. 134 no. 6 (March, 2007), pp. 1061-70  [abs].
  40. Wu, S-Y, Y-P Yang and D R McClay, Twist is an essential regulator of the skeletogenic gene regulatory network in the sea urchin embryo, Dev Biol, vol. 319 (2008), pp. 406-415 .
  41. Voronina. E., Lopez, M., Juliano, C., Gustafson, E., Song, J., Extavour, C., George. S., Oliveri, P., McClay, D.R. and Wessel, G.M., Vasa protein expression is restricted to the small micromeres of the sea urchin, but is inducible in other lineages early in development., Dev Biol, vol. 314 (2008), pp. 276-286 .
  42. Croce, J.C. and D.R. McClay, Evolution of Wnt pathways., Methods in Molecular Biology, vol. 2 (2008), pp. 3-18, Humana Press .
  43. E Röttinger, A Saudemont, V Duboc, L Besnardeau, D McClay, T Lepage, FGF signals guide migration of mesenchymal cells, control skeletal morphogenesis of the skeleton and regulate gastrulation during sea urchin development., Development, vol. 135 (December, 2008), pp. 353-365  [abs].
  44. Range, R., T. Glenn, and D.R. McClay, Lv-Numb promotes Notch-mediated specification of secondary mesenchyme cells in the sea urchin embryo, Development, vol. 135 (December, 2008), pp. 2445-2454 .

Papers Submitted

  1. J Croce, R Range, S-Y Wu, E Miranda, A Wikramanayake, T Lepage, and DR. McClay, Maternal determinants in the vegetal cortex are required to activate the sea urchin endomesoderm gene regulatory network, Development (2008) .
  2. Bradham, CA., C Oikonomou, W. Modell, D R. McClay and A J.Poustka, Chordin is required for neural but not axial specification in sea urchin embryos, Dev Biol (2008) .
  3. Byrum, C.A., J. M. Bince, R.H. Xu, M.H. Illies, D.R. McClay, C. Ettensohn, and A.H. Wikramanayake, Roles of Dsh in the regulation of sea urchin gastrulation., Dev Dyn (December, 2008) .

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