Publications of James S. Clark :chronological combined listing:
%% Books
@book{fds36571,
Author = {J.S. Clark},
Title = {Models for Ecological Data},
Publisher = {Princeton University Press},
Year = {2005},
Key = {fds36571}
}
@book{fds36572,
Author = {J.S. Clark},
Title = {Ecological data models with R},
Publisher = {Princeton University Press},
Year = {2005},
Key = {fds36572}
}
@book{fds36573,
Author = {Clark, J.S. and A. Gelfand},
Title = {Applications of Computational Statistics in the
Environmental Sciences: Hierarchical Bayes and MCMC
Methods},
Publisher = {Oxford University Press},
Year = {2005},
Key = {fds36573}
}
@book{fds36575,
Author = {Clark, J.S. and B.J. Stocks and H. Cachier and J.G. Goldammer},
Title = {Sediment Records of Biomass Burning and Global
Change},
Publisher = {Springer Verlag, Berlin, Germany},
Year = {1997},
Key = {fds36575}
}
%% Papers Published
@article{fds155196,
Author = {Cressie, N. and C. A. Calder and J. S. Clark and J. M. Ver Hoef and C. K. Wikle},
Title = {Accounting for uncertainty in ecological analysis: the
strengths and limitations of hierarchical statistical
modeling},
Journal = {Ecol Appl},
Year = {2008},
Key = {fds155196}
}
@article{fds155198,
Author = {Ibáñez, I. and Clark, J.S. and Dietze, M.},
Title = {Evaluating the sources of potential migrant species:
Implications under climate change},
Journal = {Ecol Appl},
Volume = {18},
Pages = {1664-1678},
Year = {2008},
Key = {fds155198}
}
@article{fds155199,
Author = {Dietze, M. and M. Wolosin and J. S. Clark},
Title = {Tree allometries: capturing diversity using a Hierarchical
Bayes approach. Forest Ecology and Management},
Volume = {256},
Pages = {1939-1948},
Year = {2008},
Key = {fds155199}
}
@article{fds155205,
Author = {Govindarajan, S. M. Dietze and P. Agarwal and J.S.
Clark},
Title = {A scalable algorithm for dispersing populations},
Journal = {Journal of Intelligent Information Systems},
Year = {2007},
url = {http://dx.doi.org/10.1007/s10844-006-0030-z},
Key = {fds155205}
}
@article{fds155200,
Author = {Clark, J.S. and M. Dietze and P. Agarwal and S. Chakraborty and I.
Ibanez, S. LaDeau and M. Wolosin},
Title = {Resolving the biodiversity debate},
Journal = {Ecol Letters},
Volume = {10},
Pages = {647–662},
Year = {2007},
Key = {fds155200}
}
@article{fds155202,
Author = {Dietze, M. and J. S. Clark},
Title = {Changing the gap dynamics paradigm: Vegetative regeneration
control on forest response to disturbance},
Journal = {Ecol Monog},
Volume = {78},
Pages = {331-347},
Year = {2007},
Key = {fds155202}
}
@article{fds155203,
Author = {Clark, J.S. and M. Wolosin and M. Dietze and I. Ibanez and S. LaDeau and M.
Welsh and B. Kloeppel},
Title = {Tree growth inference and prediction from diameter censuses
and ring widths. Ecological Applications},
Journal = {Ecol Appl},
Volume = {17},
Pages = {1942-1953},
Year = {2007},
Key = {fds155203}
}
@article{fds155204,
Author = {Ibáñez, I. and J.S. Clark and S. LaDeau and J. Hille Ris
Lambers},
Title = {Exploiting temporal variability to understand tree
recruitment response to climate change},
Journal = {Ecol Monog},
Volume = {77},
Pages = {163-177},
Year = {2007},
Key = {fds155204}
}
@article{fds155206,
Author = {Flikkema, P.G. and P.J. K. Agarwal and J. S. Clark and C. Ellis and A.
Gelfand, K. Munagala and J. Yang},
Title = {From data reverence to data relevance: Model-mediated
wireless sensing of the physical environment},
Pages = {988–994},
Booktitle = {ICCS 2007, Part I, LNCS 4487},
Editor = {Y. Shi et al.},
Year = {2007},
Key = {fds155206}
}
@article{fds36627,
Author = {J.S. Clark},
Title = {Why environmental scientists are becoming
Bayesians},
Journal = {Ecology Letters},
Volume = {8},
Pages = {2-14},
Year = {2005},
Key = {fds36627}
}
@article{fds33573,
Author = {J.S. Clark},
Title = {Uncertainty in population growth rates calculated from
demography: the hierarchical approach},
Journal = {Ecology},
Volume = {84},
Pages = {1370-1381},
Year = {2005},
Key = {fds33573}
}
@article{fds36635,
Author = {McLachlan, J.S. and J.S. Clark},
Title = {Reconstructing historical ranges with fossil data at
continental scales},
Journal = {Forest Ecology and Management},
Volume = {197},
Pages = {139-147},
Year = {2004},
Month = {June},
Key = {fds36635}
}
@article{fds36634,
Author = {Clark, J.S. and O. Bjornstad},
Title = {Population time series: Process variability, observation
errors, missing values, lags, and hidden
states},
Journal = {Ecology},
Volume = {85},
Pages = {3140-3150},
Year = {2004},
Month = {May},
Key = {fds36634}
}
@article{fds36633,
Author = {Clark J.S. and S. LaDeau and I. Ibanez},
Title = {Fecundity of trees and the colonization-competition
hypothesis},
Journal = {Ecological Monographs},
Volume = {74},
Pages = {415-442},
Year = {2004},
Month = {April},
Key = {fds36633}
}
@article{fds36632,
Author = {J.S. Clark},
Title = {Neutral theory (communication arising): The stability of
forest biodiversity},
Journal = {Nature},
Volume = {427},
Pages = {696-697},
Year = {2004},
Month = {March},
Key = {fds36632}
}
@article{fds36630,
Author = {Mohan, J.E. and J.S. Clark and W.H. Schlesinger},
Title = {Genetic variation in germination, growth, and survivorship
of red maple in response to subambient through elevated
atmospheric CO2},
Journal = {Global Change Biology},
Volume = {10},
Pages = {233-247},
Year = {2004},
Month = {February},
Key = {fds36630}
}
@article{fds36629,
Author = {Lynch, J.A. and J.S. Clark and B.J. Stocks},
Title = {Charcoal production, dispersal and deposition from the Fort
Providence Experimental Fire: Interpreting fire regimes from
charcoal records in boreal forests},
Journal = {Canadian Journal of Forest Research},
Volume = {34},
Pages = {1642-1656},
Year = {2004},
Month = {January},
Key = {fds36629}
}
@article{fds33567,
Author = {J.S. Clark},
Title = {Reid’s Paradox: Tree migration capacity and rapid climate
change},
Booktitle = {Conservation and Global Change},
Publisher = {Yale University Press},
Editor = {T. Lovejoy},
Year = {2004},
Key = {fds33567}
}
@article{fds15432,
Author = {Clark, J.S. and J.S. McLachlan},
Title = {Stability of forest diversity},
Journal = {Nature},
Volume = {423},
Pages = {635-638},
Year = {2003},
Month = {October},
Key = {fds15432}
}
@article{fds15433,
Author = {Higgins, S.I. and J. S. Clark and R. Nathan and T. Hovestadt and F.
Schurr, J. M. V. Fragoso and M. R. Aguiar and E. Ribbens and S.
Lavorel},
Title = {Forecasting plant migration rates: managing uncertainty for
risk assessment},
Journal = {Journal of Ecology},
Volume = {91},
Pages = {341-347},
Year = {2003},
Month = {September},
Key = {fds15433}
}
@article{fds33608,
Author = {Hille Ris Lambers and J. and J.S. Clark},
Title = {Effects of dispersal, shrubs, and density-dependent
mortality on seed and seedling distributions in temperate
forests},
Journal = {Canadian Journal of Forest Research},
Volume = {33},
Pages = {783-795},
Year = {2003},
Month = {August},
Key = {fds33608}
}
@article{fds15434,
Author = {Beckage, B. and J.S. Clark},
Title = {Seedling survival and growth in Southern Appalachian
forests: Does spatial heterogeneity maintain species
diversity},
Journal = {Ecology},
Volume = {84},
Pages = {1849-1861},
Year = {2003},
Month = {July},
Key = {fds15434}
}
@article{fds15430,
Author = {Clark, J.S. and M. Lewis and J.S. McLachlan and J. Hille Ris
Lambers},
Title = {Estimating population spread: what can we forecast and how
well},
Journal = {Ecology},
Volume = {84},
Pages = {1979-1988},
Year = {2003},
Month = {June},
Key = {fds15430}
}
@article{fds15431,
Author = {Calder, K. M. Lavine and P. Mueller and J.S.
Clark},
Title = {Incorporating multiple sources of stochasticity in
population dynamic models},
Journal = {Ecology},
Volume = {84},
Pages = {1395-1402},
Year = {2003},
Month = {May},
Key = {fds15431}
}
@article{fds15437,
Author = {Clark, J.S.},
Title = {Uncertainty in ecological inference and forecasting.
(Special Feature)},
Journal = {Ecology},
Volume = {84},
Pages = {1370-1381},
Year = {2003},
Month = {April},
Key = {fds15437}
}
@article{fds15438,
Author = {Clark, J.S.},
Title = {Uncertainty in population growth rates calculated from
demography: the hierarchical approach},
Journal = {Ecology},
Volume = {84},
Pages = {1349-1360},
Year = {2003},
Month = {March},
Key = {fds15438}
}
@article{fds15439,
Author = {Lynch, J.A. and B. Bigelow and J.S. Clark and M. Edwards and B.
Finney},
Title = {Spatial and temporal variation in boreal
fire},
Journal = {Journal of Geophysical Research},
Volume = {108},
Pages = {8152-8169},
Year = {2003},
Month = {February},
Key = {fds15439}
}
@article{fds15440,
Author = {Clark, J. S. and J. Mohan and M. Dietze and I.
Ibanez},
Title = {Coexistence: how to identify trophic tradeoffs},
Journal = {Ecology},
Volume = {84},
Pages = {17-31},
Year = {2003},
Month = {January},
Key = {fds15440}
}
@article{fds35242,
Author = {Hille Ris Lambers and J.S. Clark and J.B. Beckage},
Title = {Density Dependent Mortality and the Latitudinal Gradient in
Species Diversity},
Journal = {Nature},
Volume = {417},
Pages = {732-735},
Year = {2002},
Month = {July},
Key = {fds35242}
}
@article{fds33577,
Author = {Wyckoff, P.H. and J.S. Clark},
Title = {Growth and mortality for seven co-occurring tree species in
the southern Appalachian Mountains: implications for future
forest composition},
Journal = {Journal of Ecology},
Volume = {90},
Pages = {604-615},
Year = {2002},
Month = {June},
Key = {fds33577}
}
@article{fds33578,
Author = {Clark, J.S. and E.C. Grimm and J. J. Donovan and S.C. Fritz and D.R.
Engstrom and J.E. Almendinger},
Title = {Drought cycles and landscape responses to past aridity on
prairies of the Northern Great Plains, USA},
Journal = {Ecology},
Volume = {83},
Pages = {595-601},
Year = {2002},
Month = {May},
Key = {fds33578}
}
@article{fds33579,
Author = {Clark, J.S. and B. Beckage and J. Hille Ris Lambers and I. Ibanez and S.
LaDeau, J. MacLachlan and J. Mohan and M. Rocca},
Title = {Dispersal and plant migration},
Volume = {3},
Pages = {81-93},
Booktitle = {Encyclopedia of Global Environmental Change},
Publisher = {Wiley, Chichester, England},
Editor = {H. Mooney and J. Canadell},
Year = {2002},
Month = {April},
Key = {fds33579}
}
@article{fds33601,
Author = {Clark, J.S. and A. M. Gill and A. P. Kershaw},
Title = {Spatial variability in fire regimes: its effects on recent
and past vegetation},
Pages = {125-144},
Booktitle = {Flammable Austrailia: the Fire Regimes and Biodiversity of a
Continent},
Publisher = {Cambridge University Press, Cambridge, England},
Editor = {R. A. Bradstock and J.E. Williams and A. M.
Gill},
Year = {2002},
Month = {March},
Key = {fds33601}
}
@article{fds33596,
Author = {Kershaw, A. P. and Clark, J.S. and A. M. gill and D. M.
D'Costa},
Title = {A history of fire in Australia},
Booktitle = {Flammable Australia: the Fire Regimes and Biodiversity of a
Continent},
Publisher = {Cambridge University Press, Cambridge, England.},
Editor = {R. Bradstock and A.M. Gill},
Year = {2002},
Month = {February},
Key = {fds33596}
}
@article{fds33581,
Author = {Lavine, M. and B. Beckage and J.S. Clark},
Title = {Statistical modeling of seedling mortality},
Journal = {Journal of Agricultural, Biological, and Environmental
Statistics},
Volume = {7},
Pages = {21-41},
Year = {2002},
Month = {January},
Key = {fds33581}
}
@article{fds33582,
Author = {J.S. Clark and S.R. Carpenter and M. Barber and S. Collins and A.
Dobson, J. Foley and D. Lodge and M. Pascual and R. Pielke, Jr. and W.
Pizer, C. Pringle and W. V. Reid and K.A. Rose and O. Sala and W.H.
Schlesinger, D. Wall and D. Wear.},
Title = {Ecological forecasts: an emerging imperative},
Journal = {Science},
Volume = {293},
Pages = {657-660},
Year = {2001},
Month = {August},
Key = {fds33582}
}
@article{fds33583,
Author = {Camill, P. and J.A Lynch and J.S. Clark and J.B. Adams and B.
Jordan},
Title = {Changes in biomass, aboveground NPP, and peat accumulation
following permafrost thaw in the boreal peatlands of
Manitoba, Canada},
Journal = {Ecosystems},
Volume = {4},
Pages = {461-478},
Year = {2001},
Month = {July},
Key = {fds33583}
}
@article{fds33604,
Author = {LaDeau, S. and J.S. Clark},
Title = {Rising CO2 and the fecundity of forest trees},
Journal = {Science},
Volume = {292},
Pages = {95-98},
Year = {2001},
Month = {June},
Key = {fds33604}
}
@article{fds1467,
Author = {Clark, J.S. and Lewis, M. and L. Horvath.},
Title = {Invasion by extremes: variation in dispersal and
reproduction retards population spread},
Journal = {American Naturalist},
Volume = {157},
Pages = {537-554},
Year = {2001},
Month = {May},
Key = {fds1467}
}
@article{fds1471,
Author = {Clark, J.S. and L. Horvath and M. Lewis},
Title = {On the estimation of spread for a biological
population},
Journal = {Statistics and Probability Letters},
Volume = {51},
Pages = {225-234},
Year = {2001},
Month = {April},
Key = {fds1471}
}
@article{fds33587,
Author = {Schlesinger, W.H. and J.S. Clark and J.E. Mohan and C.D.
Reid},
Title = {Global environmental change: effects on biodiversity},
Pages = {175-224},
Booktitle = {Research Priorities for Conservation Biology},
Publisher = {Island Press},
Editor = {G. Orians and M. Soule},
Year = {2001},
Month = {March},
Key = {fds33587}
}
@article{fds33595,
Author = {Clark, J.S. and E.C. Grimm and J. Lynch and P.J.
Mueller},
Title = {Effects of Holocene climate change on the C4
grassland/woodland boundary in the Northern Central
Plains},
Journal = {Ecology},
Volume = {82},
Pages = {620-636},
Year = {2001},
Month = {February},
Key = {fds33595}
}
@article{fds33606,
Author = {Clark, J.S. and M. Lavine},
Title = {Bayesian statistics in ecology},
Pages = {327–346},
Booktitle = {Design and Analysis of Ecological Experiments},
Publisher = {Oxford Univ Press, Oxford, England},
Editor = {S.M. Scheiner and J. Gurevitch},
Year = {2001},
Month = {January},
Key = {fds33606}
}
@article{fds1510,
Author = {Beckage, B. and J.S. Clark and B.D. Clinton and B.L.
Haines},
Title = {A long-term study of tree seedling recruitment in southern
Appalachian forests: the effects of canopy gaps and shrub
understories},
Journal = {Canadian Journal of Forest Research},
Volume = {30},
Pages = {1617-1631},
Year = {2000},
Month = {April},
Key = {fds1510}
}
@article{fds33694,
Author = {Camill, P. and J.S. Clark},
Title = {Complex long-term climate responses of North American boreal
forest and savanna},
Journal = {Ecosystems},
Volume = {3},
Pages = {534-544},
Year = {2000},
Month = {March},
Key = {fds33694}
}
@article{fds1520,
Author = {Wyckoff, P.H. and J.S. Clark},
Title = {Predicting tree mortality from diameter growth: a comparison
of maximum likelihood and Bayesian approaches},
Journal = {Canadian Journal of Forest Research},
Volume = {30},
Pages = {156-167},
Year = {2000},
Month = {February},
Key = {fds1520}
}
@article{fds1521,
Author = {Knoepp, J.D. and D.C. Coleman and D.A. Crossley and J.S.
Clark},
Title = {Biological indices of soil quality: an ecosystem case study
of their use},
Journal = {Forest Ecology and Management},
Volume = {138},
Pages = {357-368},
Year = {2000},
Month = {January},
Key = {fds1521}
}
@article{fds33698,
Author = {Clark, J.S. and B. Beckage and P. Camill and B. Cleveland and J. Hille
Ris Lambers and J. Lichter and J. MacLachlan and J. Mohan and P.
Wyckoff},
Title = {Interpreting recruitment limitation in forests},
Journal = {American Journal of Botany},
Volume = {86},
Pages = {1-16},
Year = {1999},
Month = {February},
Key = {fds33698}
}
@article{fds33700,
Author = {Clark, J.S. and M. Silman and R. Kern and E. Macklin and J. Hille
Ris Lambers},
Title = {Seed dispersal near and far: generalized patterns across
temperate and tropical forests},
Journal = {Ecology},
Volume = {80},
Pages = {1475-1494},
Year = {1999},
Month = {January},
Key = {fds33700}
}
@article{fds33701,
Author = {Clark, J. S. and C. Fastie and G. Hurtt and S. T. Jackson and C.
Johnson, G. King and M. Lewis and J. Lynch and S. Pacala and I.C.
Prentice, E. W. Schupp and T. Webb III and P.
Wyckoff},
Title = {Reid’s Paradox of rapid plant migration},
Journal = {BioScience},
Volume = {48},
Pages = {13-24},
Year = {1998},
Month = {June},
Key = {fds33701}
}
@article{fds33702,
Author = {Clark, J. S. and J. Lynch and B. J. Stocks},
Title = {Relationships between charcoal particles in air and
sediments in west-central Siberia},
Journal = {The Holocene},
Volume = {8},
Pages = {19-30},
Year = {1998},
Month = {May},
Key = {fds33702}
}
@article{fds33703,
Author = {Clark, J. S. and E. Macklin and L. Wood},
Title = {Stages and spatial scales of recruitment limitation in
southern Appalachian forests},
Journal = {Ecological Monographs},
Volume = {68},
Pages = {213-235},
Year = {1998},
Month = {April},
Key = {fds33703}
}
@article{fds33705,
Author = {Camill, P. and J.S. Clark},
Title = {Climate change disequilibrium of boreal permafrost peatlands
caused by local processes},
Journal = {American Naturalist},
Volume = {151},
Pages = {207-222},
Year = {1998},
Month = {March},
Key = {fds33705}
}
@article{fds33706,
Author = {Collatz, G.J. and J.A. Berry and J. S. Clark},
Title = {Effects of climate and atmospheric CO2 partial pressure on
the global distribution of C4 plants: past, present, and
future},
Volume = {114},
Pages = {441-454},
Year = {1998},
Month = {February},
Key = {fds33706}
}
@article{fds33712,
Author = {J.S. Clark},
Title = {Why trees migrate so fast: Confronting theory with dispersal
biology and the paleo record},
Journal = {American Naturalist},
Volume = {152},
Pages = {204-224},
Year = {1998},
Month = {January},
Key = {fds33712}
}
@article{fds33713,
Author = {J.S. Clark},
Title = {Introduction to sediment records of biomass burning and
global change},
Pages = {1-9},
Booktitle = {Sediment Records of Biomass Burning and Global
Change},
Publisher = {Springer Verlag, Berlin, Germany},
Editor = {J.S. Clark and H. Cachier and J.G. Goldammer and B.J.
Stocks},
Year = {1997},
Month = {April},
Key = {fds33713}
}
@article{fds33714,
Author = {J.S. Clark and W. A. Patterson},
Title = {Background and local charcoal in sediments: scales of fire
evidence in the paleorecord.},
Pages = {23-48},
Booktitle = {Sediment Records of Biomass Burning and Global
Change},
Publisher = {Springer Verlag, Berlin, Germany},
Editor = {J.S. Clark and H. Cachier and J.G. Goldammer and B.J.
Stocks},
Year = {1997},
Month = {March},
Key = {fds33714}
}
@article{fds33715,
Author = {J.S. Clark},
Title = {Facing short-term extrapoloation with long-term evidence:
Holocene fire in the north-eastern US forests},
Journal = {Journal of Ecology},
Volume = {85},
Pages = {377-380},
Year = {1997},
Month = {February},
Key = {fds33715}
}
@article{fds33716,
Author = {Pitelka, L. F. and J. Ash and S. Berry and R.H.W. Bradshaw and L.
Brubaker, J.S. Clark and M.B. Davis and J.M. Dyer and R.H. Gardner and H. Gitay and G. Hope R. Hengeveld and B. Huntley and G.A. King and S.
Lavorel, R.N. Mack and G.P. Malanson and M. McGlone and I.R. Noble and I.C. Prentice and M. Rejmane},
Title = {Plant migration and climate change},
Journal = {American Scientist},
Volume = {85},
Pages = {464-473},
Year = {1997},
Month = {January},
Key = {fds33716}
}
@article{fds33717,
Author = {J.S. Clark and T. C. Hussey},
Title = {Estimating the mass flux of charcoal from sediment records:
the effect of particle size, morphology, and
orientation},
Journal = {The Holocene},
Volume = {6},
Pages = {129-144},
Year = {1996},
Month = {November},
Key = {fds33717}
}
@article{fds33718,
Author = {J.S. Clark},
Title = {Baseline biomass burning emissions of eastern North
America},
Pages = {750-757},
Booktitle = {Biomass Burning and Global Change},
Publisher = {MIT Press, Cambridge, Massachusetts, USA},
Editor = {J.S. Levine},
Year = {1996},
Month = {October},
Key = {fds33718}
}
@article{fds33719,
Author = {J.S. Clark and P. J. H. Richard},
Title = {The role of paleofire in boreal and other cool-coniferous
forests},
Pages = {65-89},
Booktitle = {Fire in Ecosystem of Boreal Eurasia},
Publisher = {Kluwer, Dordrecht, The Netherlands},
Editor = {J.G. Goldammer and V.V. Furyaev},
Year = {1996},
Month = {September},
Key = {fds33719}
}
@article{fds33720,
Author = {Clark, J. S. and T. C. Hussey and P. D. Royall},
Title = {Presettlement analogs for Quaternary fire regimes in eastern
North America},
Journal = {Journal of Paleolimnology},
Volume = {16},
Pages = {79-96},
Year = {1996},
Month = {August},
Abstract = {Clark, J. S., T. C. Hussey, and P. D. Royall. 1996.
Presettlement analogs for Quaternary fire regimes in eastern
North America. Journal of Paleolimnology 16:
79-96.},
Key = {fds33720}
}
@article{fds33721,
Author = {J.S. Clark and P. D. Royall},
Title = {Local and regional sediment charcoal evidence for fire
regimes in presettlement northeastern North
America},
Journal = {Journal of Ecology},
Volume = {84},
Pages = {365-382},
Year = {1996},
Month = {July},
Key = {fds33721}
}
@article{fds33722,
Author = {Clark, J. S. and P. D. Royall and C. Chumbley},
Title = {The role of fire during climate change in an eastern North
American forest at Devil’s Bathtub, New
York},
Journal = {Ecology},
Volume = {77},
Pages = {2148-2166},
Year = {1996},
Month = {May},
Key = {fds33722}
}
@article{fds33723,
Author = {Clark, J.S. and B.J. Stocks and P. J.H. Richard},
Title = {Climate implications of biomass burning since the 19th
century in eastern North America},
Journal = {Global Change Biology},
Volume = {2},
Pages = {433-458},
Year = {1996},
Month = {May},
Key = {fds33723}
}
@article{fds33819,
Author = {J.S. Clark},
Title = {Testing disturbance theory with long-term data: alternative
life history solutions to the distribution of
events},
Journal = {American Naturalist},
Volume = {148},
Pages = {976-996},
Year = {1996},
Month = {April},
Key = {fds33819}
}
@article{fds33823,
Author = {J.S. Clark},
Title = {Terrestrial biotic responses to environmental change and
feedbacks to climate},
Pages = {445-482},
Booktitle = {Climate Change 1995: The Science of Climate
Change},
Publisher = {Intergovernmental Panel on Climate Change, Cambridge
University Press, Cambridge, England},
Editor = {J.T. Houghton and L. G. Meira Filho and B.A. Callander and N. Harris and A. Kattenberg and K. Maskell},
Year = {1996},
Month = {March},
Key = {fds33823}
}
@article{fds33824,
Author = {J.S. Clark},
Title = {Fire in ecosystems of boreal Eurasia: the Bor Forest Island
Fire Experiment Fire Research Campaign Asia - North
(FIRESCAN)},
Pages = {848-873},
Booktitle = {Biomass Burning and Global Change},
Publisher = {MIT Press, Cambridge, Massachusetts, USA},
Editor = {J.S. Levine},
Year = {1996},
Month = {February},
Key = {fds33824}
}
@article{fds33825,
Author = {Weiss, K. F. and J. G. Goldammer and J. S. Clark and D. A.
Livingstone and M. O. Andreae},
Title = {Reconstruction of prehistoric fire regimes in East Africa by
lake sediment analysis},
Booktitle = {Biomass Burning and Global Change},
Publisher = {MIT Press, Cambridge, Massachusetts, USA},
Editor = {J.S. Levine},
Year = {1996},
Month = {January},
Key = {fds33825}
}
@article{fds33826,
Author = {Clark, J. S. and Y. Ji.},
Title = {Fecundity and dispersal in plant populations: implications
for structure and diversity},
Journal = {The American Naturalist},
Volume = {146},
Pages = {72-111},
Year = {1995},
Month = {April},
Key = {fds33826}
}
@article{fds33827,
Author = {Clark, J. S. and P. D. Royall},
Title = {Transformation of a northern hardwood forest by aboriginal
(Iroquois) fire: charcoal evidence from Crawford Lake,
Ontario, Canada},
Journal = {The Holocene},
Volume = {5},
Pages = {1-9},
Year = {1995},
Month = {March},
Key = {fds33827}
}
@article{fds33829,
Author = {J.S. Clark and P. D. Royall},
Title = {Particle-size evidence for source areas of charcoal
accumulation in Late Holocene sediments of eastern North
American lakes},
Journal = {Quaternary Research},
Volume = {43},
Pages = {80-89},
Year = {1995},
Month = {February},
Key = {fds33829}
}
@article{fds33830,
Author = {Wright, H. E. and J. S. Clark},
Title = {Charcoal analysis of varved lake sediments},
Journal = {Laminated Sediments and Archaeology, Journal of the European
Study Group on Physical, Chemical, Mathematical and
Biological Techniques Applied to Archaeology},
Pages = {125-130},
Publisher = {Rixensart, Belgium},
Editor = {In S. Hicks and U. Miller and M. Saarnito},
Year = {1995},
Month = {January},
Key = {fds33830}
}
@article{fds33828,
Author = {J.S. Clark},
Title = {Climate and Indian effects on southern Ontario forests:
forum},
Volume = {5},
Pages = {371-379},
Year = {1995},
Key = {fds33828}
}
@article{fds33831,
Author = {J.S. Clark},
Title = {Fire in boreal ecosystems of Eurasia: first results of the
Bor Forest Island Fire Experiment, Fire Research Campaign
Asia-North (FIRESCAN)},
Journal = {Journal of World Resources Review},
Pages = {499-519},
Year = {1994},
Month = {February},
Key = {fds33831}
}
@article{fds33832,
Author = {J.S. Clark and P. D. Royall},
Title = {Pre-industrial particulate emissions and carbon
sequestration from biomass burning in North
America},
Journal = {Biogeochemistry},
Volume = {23},
Pages = {1-17},
Year = {1994},
Month = {January},
Key = {fds33832}
}
@article{fds33833,
Author = {J.S. Clark},
Title = {Sensitivity of forest communities to global climate
change},
Pages = {315-332},
Booktitle = {Biotic Interactions and Global Change},
Publisher = {Sinauer, Sunderland, MA},
Editor = {P. Kareiva and J.G. Kingsolver and R.B. Huey},
Year = {1993},
Month = {August},
Key = {fds33833}
}
@article{fds33834,
Author = {J.S. Clark},
Title = {Functional groups and ecological consistencies: population
perspectives on regional forest dynamics},
Pages = {255-286},
Booktitle = {Scaling Processes between Leaf and Landscape
Levels},
Publisher = {New York, NY},
Editor = {J. Ehleringer and C. Field},
Year = {1993},
Month = {July},
Key = {fds33834}
}
@article{fds33835,
Author = {J.S. Clark and J. Robinson},
Title = {Paleoecology of Fire},
Pages = {193-214},
Booktitle = {Fire in the Environment: its Ecological, Climatic, and
Atmospheric Chemical Importance},
Publisher = {Dahlem Conference, Wiley},
Editor = {P. Crutzen and J. Goldammer},
Year = {1993},
Month = {June},
Key = {fds33835}
}
@article{fds33836,
Author = {J.S. Clark},
Title = {Fire, climate, and forest processes during the last 2000
years},
Pages = {295-308},
Booktitle = {Ecology and Paleoecology of Elk Lake},
Publisher = {Geological Society of America},
Editor = {W.E. Dean and J.P. Bradbury},
Year = {1993},
Month = {May},
Key = {fds33836}
}
@article{fds33837,
Author = {J.S. Clark},
Title = {Shifting mosaic population dynamics},
Series = {S. Levin, T.M. Powell, and J.H. Steele},
Booktitle = {Patch Dynamics},
Publisher = {Springer Verlag, New York, New York},
Year = {1993},
Month = {April},
Key = {fds33837}
}
@article{fds33838,
Author = {Binkley, D. and P. Becker-Heidman and J.S. Clark and P.J. Crutzen and P.
Frost, A.M. Gill and A. Granström and F. Mack and J.–C. Menaut and R.W. Wein and B. van Wilgren},
Title = {Impacts of fires on ecosystems},
Pages = {359-374},
Booktitle = {Fire in the Environment: its Ecological, Climatic, and
Atmospheric Chemical importance},
Publisher = {Dahlem Conference, Wiley},
Editor = {P. Crutzen and J. Goldammer},
Year = {1993},
Month = {March},
Key = {fds33838}
}
@article{fds33839,
Author = {J.S. Clark},
Title = {Scale relationships in boreal forest},
Journal = {Trends in Ecology and Evolution},
Volume = {8},
Pages = {220},
Year = {1993},
Month = {February},
Key = {fds33839}
}
@article{fds33840,
Author = {J.S. Clark and Reid, C.D.},
Title = {Sensitivity of unmanaged ecosystems to global
change},
Journal = {Non-linear Responses to Global Change, Resources for the
Future},
Pages = {53-89},
Publisher = {Washington, D.C.},
Editor = {Darmstader, J. and Toman, M. A.},
Year = {1993},
Month = {January},
Key = {fds33840}
}
@article{fds33841,
Author = {J.S. Clark},
Title = {Disturbance, climate change, and forest rehabilitation},
Pages = {165-186},
Booktitle = {Ecosystem Rehabilitation: Preamble to Sustained
Development},
Publisher = {SPB Academic Publishing, The Hague, Netherlands},
Editor = {M. Wali},
Year = {1992},
Month = {May},
Key = {fds33841}
}
@article{fds33842,
Author = {J.S. Clark},
Title = {Implications of individual plant growth for landscape
patterns of age structure, net primary production, and
resource availabilities},
Journal = {Populations, Communities, and Ecosystems: an Individual
Perspective},
Pages = {421-454},
Publisher = {Chapman and Hall, New York, NY},
Editor = {D. DeAngelis and L. Gross},
Year = {1992},
Month = {April},
Key = {fds33842}
}
@article{fds33843,
Author = {J.S. Clark},
Title = {Validating model predictions of climate and vegetation
change},
Pages = {423-440},
Booktitle = {Earth System Modeling},
Publisher = {OIES Global Change Institute, Boulder, CO},
Editor = {D. Ojima},
Year = {1992},
Month = {March},
Key = {fds33843}
}
@article{fds34923,
Author = {J.S. Clark},
Title = {Density-independent mortality, density compensation, and gap
formation in plant populations},
Journal = {Theoretical Population Biology},
Volume = {42},
Pages = {172-198},
Year = {1992},
Month = {February},
Key = {fds34923}
}
@article{fds34924,
Author = {Morris, L.A. and P.B. Bush and J.S. Clark},
Title = {Ecological impacts and risks associated with forest
management},
Pages = {153-214},
Booktitle = {Predicting Ecosystem Risk},
Publisher = {Princeton Scientific Publishing Co, Princeton,
NJ},
Editor = {J. Cairns and B.R. Niederlehner and D.R. Orvos},
Year = {1992},
Month = {January},
Key = {fds34924}
}
@article{fds34925,
Author = {J.S. Clark},
Title = {Ecosystem sensitivity to climate change and complex
responses},
Pages = {65-98},
Booktitle = {Global Change and Life on Earth},
Publisher = {Chapman and Hall, New York, New York},
Editor = {R. Wyman},
Year = {1991},
Month = {April},
Key = {fds34925}
}
@article{fds34926,
Author = {J.S. Clark},
Title = {Forest-tree growth rates and probability of gap origin–a
comment},
Journal = {Ecology},
Volume = {72},
Pages = {1166-1169},
Year = {1991},
Month = {March},
Key = {fds34926}
}
@article{fds34927,
Author = {J.S. Clark},
Title = {Disturbance and tree life history on the shifting mosaic
landscape},
Volume = {72},
Pages = {1102-1118},
Year = {1991},
Month = {February},
Key = {fds34927}
}
@article{fds34928,
Author = {J.S. Clark},
Title = {Disturbance and population structure on the shifting mosaic
landscape},
Journal = {Ecology},
Volume = {72},
Pages = {1119-1137},
Year = {1991},
Month = {January},
Key = {fds34928}
}
@article{fds34929,
Author = {J.S. Clark},
Title = {Fire and climate change during the last 750 years in
northwestern Minnesota},
Journal = {Ecological Monographs},
Volume = {60},
Pages = {135-159},
Year = {1990},
Month = {May},
Key = {fds34929}
}
@article{fds34930,
Author = {J.S. Clark},
Title = {Integration of ecological levels: individual plant growth,
population mortality, and ecosystem dynamics},
Journal = {Journal of Ecology},
Volume = {78},
Pages = {275-299},
Year = {1990},
Month = {April},
Key = {fds34930}
}
@article{fds34931,
Author = {J.S. Clark},
Title = {Effects of 20th century climate change and fire suppression
on forest production and decomposition in northwestern
Minnesota},
Journal = {Canadian Journal of Forest Research},
Volume = {20},
Pages = {219-232},
Year = {1990},
Month = {March},
Key = {fds34931}
}
@article{fds34932,
Author = {J.S. Clark},
Title = {Population and evolutionary consequences of being a coastal
plant: long-term evidence from the North Atlantic
coasts},
Journal = {Aquatic Science Reviews},
Volume = {2},
Pages = {509-533},
Year = {1990},
Month = {February},
Key = {fds34932}
}
@article{fds34933,
Author = {J.S. Clark},
Title = {Landscape interactions among nitrogen mineralization,
species composition, and long-term disturbance},
Journal = {Biogeochemisty},
Volume = {11},
Pages = {1-22},
Year = {1990},
Month = {January},
Key = {fds34933}
}
@article{fds34934,
Author = {J.S. Clark},
Title = {Water balance and fire occurrence during the last 160 years
in northwestern Minnesota},
Journal = {Journal of Ecology},
Volume = {77},
Pages = {989-1004},
Year = {1989},
Month = {April},
Key = {fds34934}
}
@article{fds34935,
Author = {J.S. Clark},
Title = {Clark, J.S. 1989. Forests are for burning},
Journal = {Natural History},
Volume = {1},
Pages = {50-53},
Year = {1989},
Month = {March},
Key = {fds34935}
}
@article{fds34936,
Author = {J.S. Clark and J. Merkt and H. Müller},
Title = {Post Glacial fire, vegetation, and cultural history of the
northern Alpine forelands, southwest Germany},
Journal = {Journal of Ecology},
Volume = {77},
Pages = {897-925},
Year = {1989},
Month = {February},
Key = {fds34936}
}
@article{fds34937,
Author = {J.S. Clark},
Title = {Ecological disturbance as a renewal process: theory and
application to fire history},
Journal = {Oikos},
Volume = {56},
Pages = {17-30},
Year = {1989},
Key = {fds34937}
}
@article{fds34938,
Author = {J.S. Clark},
Title = {Effects of climate change on fire regime in northwestern
Minnesota},
Journal = {Nature},
Volume = {334},
Pages = {233-235},
Year = {1988},
Month = {March},
Key = {fds34938}
}
@article{fds34939,
Author = {J.S. Clark},
Title = {Stratigraphic charcoal analysis on petrographic thin
sections: recent fire history in northwestern
Minnesota},
Journal = {Quaternary Research},
Volume = {30},
Pages = {81-91},
Year = {1988},
Month = {February},
Key = {fds34939}
}
@article{fds34940,
Author = {J.S. Clark},
Title = {Particle motion and the theory of charcoal analysis: source
area, transport, deposition, and sampling},
Journal = {Quaternary Research},
Volume = {30},
Pages = {67-80},
Year = {1988},
Month = {January},
Key = {fds34940}
}
@article{fds34941,
Author = {J.S. Clark and Patterson, W.A.},
Title = {Dating of the organic deposits},
Booktitle = {Geomorphic Development of Long Island’s South Shore
Barriers},
Publisher = {National Park Service Technical Report, Boston,
Massachusetts},
Editor = {S.P. Leatherman},
Year = {1987},
Key = {fds34941}
}
@article{fds34942,
Author = {J.S. Clark},
Title = {Dynamism in the barrier-beach vegetation of Great South
Beach, New York},
Journal = {Ecological Monographs},
Volume = {56},
Pages = {97-126},
Year = {1986},
Month = {May},
Key = {fds34942}
}
@article{fds34943,
Author = {J.S. Clark},
Title = {Late Holocene vegetation and coastal processes at a Long
Island tidal marsh},
Volume = {74},
Pages = {561-578},
Year = {1986},
Month = {April},
Key = {fds34943}
}
@article{fds34944,
Author = {J.S. Clark},
Title = {Coastal forest tree populations in a changing environment,
southeastern Long Island, New York},
Journal = {Ecological Monographs},
Volume = {56},
Pages = {259-277},
Year = {1986},
Month = {March},
Key = {fds34944}
}
@article{fds34945,
Author = {J.S. Clark and Overpeck, J. and Webb, T. and Patterson,
W.A.},
Title = {Pollen stratigraphic correlation and dating of barrier-beach
peat sections},
Journal = {Review of Palaeobotany and Palynology},
Volume = {47},
Pages = {145-168},
Year = {1986},
Month = {February},
Key = {fds34945}
}
@article{fds34946,
Author = {J.S. Clark},
Title = {Vegetation and land-use history of the William Floyd Estate,
Fire Island National Seashore, New York},
Year = {1986},
Month = {January},
Key = {fds34946}
}
@article{fds34947,
Author = {J.S. Clark and W.A. Patterson},
Title = {The development of a tidal marsh: upland and oceanic
influences},
Journal = {Ecological Monographs},
Volume = {55},
Pages = {189-217},
Year = {1985},
Key = {fds34947}
}
@article{fds34948,
Author = {J.S. Clark},
Title = {Chronologies for recent sediments in coastal
environments},
Volume = {12},
Pages = {76-81},
Booktitle = {Proceedings of the 12th Nordic Symposium on
Sediments},
Publisher = {Skallingen, Denmark},
Year = {1984},
Month = {February},
Key = {fds34948}
}
@article{fds34949,
Author = {J.S. Clark and Patterson, W.A.},
Title = {Pollen, 210Pb, and opaque spherules: an integrated approach
to dating and sedimentation in the intertidal
environment},
Journal = {Journal of Sedimentary Petrology},
Volume = {54},
Pages = {1249-1263},
Year = {1984},
Month = {January},
Key = {fds34949}
}
%% Papers Accepted
@article{fds155189,
Author = {Clark, J.S. and M. H. Hersh},
Title = {Inference when multiple pathogens affect multiple hosts:
Bayesian model selection},
Journal = {Bayesian Analysis},
Year = {2008},
Key = {fds155189}
}
@article{fds155190,
Author = {Clark, J.S.},
Title = {Beyond neutral science},
Journal = {Trends Ecol Evol},
Year = {2008},
Key = {fds155190}
}
@article{fds155191,
Author = {Colchero, F. and R. A. Medellin and J. S. Clark and R. Lee and G. G.
Katul},
Title = {Predicting population survival under future climate change:
density dependence, drought and extraction in an insular
bighorn sheep},
Journal = {Journal of Animal Ecology},
Year = {2008},
Key = {fds155191}
}
@article{fds155194,
Author = {Metcalf, C.J.E. and J. S. Clark and D. A. Clark},
Title = {Tree growth inference and prediction when the point of
measurement changes: modelling around buttresses in tropical
forests},
Journal = {Journal of Tropical Ecology},
Year = {2008},
Key = {fds155194}
}
@article{fds155195,
Author = {Ibáñez, I. and Clark, J.S. and Dietze, M.},
Title = {Estimating performance of potential migrant
species},
Journal = {Global Change Biology},
Year = {2008},
Key = {fds155195}
}
@article{fds155197,
Author = {Schick, R.S. and S.R. Loarie and F. Colchero and B.D. Best and A.
Boustany, D.A. Conde and P.N. Halpin and L.N. Joppa and C.M.
McClellan and J.S. Clark},
Title = {Understanding movement data and processes: emerging
techniques},
Journal = {Ecol Letters},
Year = {2008},
Key = {fds155197}
}
@article{fds155201,
Author = {Gugger, P.F. and J.S. Mclachlan and P.S. Manos and J.S.
Clark},
Title = {Inferring long-distance dispersal and topographic barriers
during postglacial colonization from the genetic structure
of red maple (Acer rubrum L.) in New England},
Journal = {Journal of Biogeography},
Year = {2008},
Key = {fds155201}
}
@article{fds36585,
Author = {Hille Ris Lambers and J., J.S. Clark. and M.
Lavine},
Title = {Seed banking in temperate forests: Implications for
recruitment limitation},
Journal = {Ecology},
Year = {2005},
Key = {fds36585}
}
@article{fds36586,
Author = {Wyckoff, P. and J.S. Clark},
Title = {Comparing predictors of tree growth: the case for exposed
canopy area},
Journal = {Canadian Journal of Forest Research},
Year = {2005},
Key = {fds36586}
}
@article{fds36616,
Author = {Govindarajan, S. and M. Dietze and P. Agarwal and J.S.
Clark},
Title = {A scalable model of forest dynamics},
Journal = {Proceedings of the ACM Symposium on Computational
Geometry},
Year = {2005},
Key = {fds36616}
}
@article{fds33477,
Author = {Brown K.J. and Clark J.S. and Grimm E.C. and Donovan J.J. and Mueller PG},
Title = {Fire cycles in North American interior grasslands and their
relation to prairie droughts},
Journal = {Proceedings of the National Academy of Sciences},
Year = {2005},
Key = {fds33477}
}
@article{fds36620,
Author = {HilleRisLambers, J. and J.S. Clark},
Title = {The benefits of seed banking for Acer rubrum: maximizing
seedling recruitment},
Journal = {Canadian Journal of Forest Research},
Year = {2005},
Key = {fds36620}
}
@article{fds36580,
Author = {Gelfand, A. and J.S. Clark and B. Carin},
Title = {Elements of Bayesian Inference},
Booktitle = {Applications of Computational Statistics in the
Environmental Sciences: Hierarchical Bayes and MCMC
Methods},
Publisher = {Oxford University Press},
Editor = {J.S. Clark and A. Gelfand},
Year = {2005},
Key = {fds36580}
}
@article{fds36581,
Author = {Beckage, B. and J.S. Clark},
Title = {Do seed and seedling predation contribute to the coexistence
of three co-occuring tree species?},
Journal = {Oecologia},
Year = {2005},
Key = {fds36581}
}
@article{fds36582,
Author = {McLachlan, J.S. and J.S. Clark and P.S. Manos},
Title = {Molecular indicators of tree migration capacity under rapid
climate change},
Journal = {Ecology},
Year = {2005},
Key = {fds36582}
}
@article{fds36583,
Author = {Lewis, M.A. and Neubert, M.G. and Caswell, H. and Clark, J.S. and Shea, K.},
Title = {A guide to calculating discrete-time invasion rates from
data},
Booktitle = {Conceptual ecology and invasions biology: Reciprocal
approaches to nature},
Editor = {M.W. Cadotte and S.M. McMahon and T.Fukami},
Year = {2005},
Key = {fds36583}
}
@article{fds36584,
Author = {J.S. Clark and S.L. LaDeau},
Title = {Synthesizing ecological experiments and observational data
with Hierarchical Bayes},
Booktitle = {Applications of Computational Statistics
in},
Publisher = {Oxford University},
Editor = {J.S. Clark and A. Gelfand},
Year = {2005},
Key = {fds36584}
}
@article{fds36615,
Author = {Clark, J.S. and G. Ferraz and N. Oguge and H. Hays and J.
DiCostanzo},
Title = {Hierarchical Bayes for structured and variable populations:
from capture-recapture data to life-history
prediction},
Journal = {Ecology},
Year = {2005},
Key = {fds36615}
}
@article{fds15412,
Author = {Clark, J.S. and O. Bjornstad},
Title = {Population inference from messy data: Errors, missing and
hidden states, and lagged responses},
Journal = {Ecology},
Year = {2003},
Key = {fds15412}
}
%% Papers Submitted
@article{fds36577,
Author = {LaDeau, S.L. and J.S. Clark},
Title = {Elevated CO2 and tree fecundity: the role of tree size,
interannual variability, and population heterogeneity},
Year = {2005},
Key = {fds36577}
}
@article{fds36578,
Author = {Ibáñez, I. and J. S. Clark and M. C. Dietze and K. Feeley and M.
Hersh, S. LaDeau and A. McBride and N. E. Welch and M. S.
Wolosin},
Title = {Predicting biodiversity change: Outside the climate
envelope, beyond the species-area curve},
Year = {2005},
Key = {fds36578}
}
@article{fds36579,
Author = {Mohan, J.E. and J. S. Clark and W. H. Schlesinger},
Title = {Long-term CO2 enrichment of an intact forest ecosystem:
implications for temperate forest regeneration and
succession},
Year = {2005},
Key = {fds36579}
}
@article{fds15404,
Author = {Clark, J.S},
Title = {Data to ecosystem prediction: complexity, variability, and
uncertainty with hierarchical Bayes},
Year = {2003},
Key = {fds15404}
}
@article{fds15407,
Author = {Beckage, B. and J.S. Clark},
Title = {Do seed and seedling predation contribute to the coexistence
of three co-occuring tree species},
Year = {2003},
Key = {fds15407}
}
@article{fds15409,
Author = {Hille Ris Lambers and J., J.S. Clark. and M.
Lavine},
Title = {Seed banking in temperate forests: Implications for
recruitment limitation},
Year = {2003},
Key = {fds15409}
}
@article{fds15224,
Author = {Clark, J.S. and G. Ferraz and N. Oguge},
Title = {Population inference from messy data: Structured, variable,
and uncertain demographic change},
Year = {2003},
Abstract = {Clark, J.S., G. Ferraz, and N. Oguge. Population inference
from messy data: Structured, variable, and uncertain
demographic change. Clark, J.S. and O. Bjornstad. Population
inference from messy data: Errors, missing and hidden
states, and lagged responses. Clark, J.S. Data to ecosystem
prediction: complexity, variability, and uncertainty with
hierarchical Bayes. McLachlan, J.S., J.S. Clark, and P.S.
Manos. Tree migration capacity under rapid climate change:
evidence from the early Holocene. Beckage, B. and J.S.
Clark. Do seed and seedling predation contribute to the
coexistence of three co-occuring tree species? Hille Ris
Lambers, J., J.S. Clark., and M. Lavine. Seed banking in
temperate forests: Implications for recruitment
limitation},
Key = {fds15224}
}
%% Books Submitted
@article{fds155193,
Author = {Clark, J.S. and D. Bell and M.l Dietze and M. Hersh and I. Ibanez and S.
LaDeau, S. McMahon and J. Metcalf and E. Moran and L. Pangle and M.
Wolosin},
Title = {Models for demography of plant populations},
Booktitle = {Handbook of Bayesian Analysis},
Publisher = {Oxford University Press},
Editor = {T. O'Hagan and M. West},
Year = {2008},
Key = {fds155193}
}
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