Publications of Clifford Cunningham :chronological combined listing:
%% Papers Published
@article{fds152434,
Author = {J.C. Regier and J.W. Schultz and A.R.D. Ganley and A. Hussey and D. Shi and B. Ball and A. Zwick and J.E. Stajich and M.P. Cummings and J.W. Martin and C.W. Cunningham},
Title = {Resolving Arthropod Phylogeny: Exploring Phylogenetic Signal
within 41 kb of Protein-Coding Nuclear Gene
Sequence},
Journal = {Systematic Biology},
Volume = {57},
Number = {6},
Pages = {920-938},
Year = {2008},
Month = {December},
Key = {fds152434}
}
@article{fds152435,
Author = {C.W. Cunningham},
Title = {Lessons Learned from Coordinating Research on the North
Atlantic},
Journal = {Ecology},
Volume = {89},
Number = {11},
Pages = {S1-S2},
Editor = {C.W. Cunningham},
Year = {2008},
Month = {November},
Key = {fds152435}
}
@article{fds152433,
Author = {D.M. Percy and A. Garver and W.L. Wagner and H.F. James and C.W.
Cunningham, S.E. Miller and R.C. Fleischer},
Title = {Progressive island colonization and ancient origin of
Hawaiian Metrosideros (Myrtaceae)},
Journal = {Proc. Roy. Soc. Ser. B},
Volume = {275},
Pages = {1479-1490},
Year = {2008},
Month = {July},
Key = {fds152433}
}
@article{fds152437,
Author = {A. Lindner and S. D. Cairns and C. W. CUNNINGHAM},
Title = {Multiple origins of shallow-water corals from deep-sea
ancestors},
Journal = {PLOs ONE},
Volume = {3},
Number = {6},
Pages = {e2429-e2433},
Year = {2008},
Month = {June},
Key = {fds152437}
}
@booklet{Bigg08,
Author = {G. R. Bigg and C. W. Cunningham and G. Ottersen and G. H.
Pogson and M. R. Wadley and P. Williamson},
Title = {Ice-age survival of Atlantic cod: agreement between
palaeoecology models and genetics},
Journal = {Proceedings Of The Royal Society B-biological
Sciences},
Volume = {275},
Number = {1631},
Pages = {163 -172},
Year = {2008},
Month = {January},
ISSN = {0962-8452},
Key = {Bigg08}
}
@booklet{Cunningham08,
Author = {C. W. Cunningham},
Title = {How to use genetic data to distinguish between natural and
human-mediated introduction of Littorina littorea to North
America},
Journal = {Biological Invasions},
Volume = {10},
Number = {1},
Pages = {1 -- 6},
Year = {2008},
Month = {January},
ISSN = {1387-3547},
Key = {Cunningham08}
}
@booklet{Riginos07,
Author = {C. Riginos and C. W. Cunningham},
Title = {Hybridization in postglacial marine habitats},
Journal = {Molecular Ecology},
Volume = {16},
Number = {19},
Pages = {3971 -- 3972},
Year = {2007},
Month = {October},
ISSN = {0962-1083},
Key = {Riginos07}
}
@booklet{Hickerson06,
Author = {M. J. Hickerson and C. W. Cunningham},
Title = {Nearshore fish (Pholis gunnellus) persists across the North
Atlantic through multiple glacial episodes},
Journal = {Molecular Ecology},
Volume = {15},
Number = {13},
Pages = {4095 -- 4107},
Year = {2006},
Month = {November},
Key = {Hickerson06}
}
@article{fds33066,
Author = {C. Riginos and C.W. Cunningham},
Title = {Invited Review: Local adaptation and species segregation in
two mussel (Mytilus edulis X Mytilus trossulus) hybrid
zones},
Journal = {Molecular Ecology},
Volume = {14},
Number = {2},
Pages = {381-400},
Year = {2005},
Month = {February},
Key = {fds33066}
}
@article{fds33087,
Author = {M.J. Hickerson C.W. Cunningham},
Title = {Contrasting quaternary histories in an ecologically
divergent pair of low-dispersing intertidal fish (Xiphister)
revealed by multi-locus DNA analysis},
Journal = {Evolution},
Volume = {59},
Pages = {344-360},
Year = {2005},
Month = {February},
Key = {fds33087}
}
@booklet{Wares05,
Author = {J. P. Wares and C. W. Cunningham},
Title = {Diversification before the most recent glaciation in Balanus
glandula},
Journal = {Biological Bulletin},
Volume = {208},
Number = {1},
Pages = {60 -- 68},
Year = {2005},
Month = {February},
Key = {Wares05}
}
@article{fds144969,
Author = {C.W. Cunningham},
Title = {The Right Time for Synthesis in Evolutionary
Biology},
Journal = {BioScience},
Volume = {55},
Number = {2},
Pages = {99},
Year = {2005},
Month = {February},
Key = {fds144969}
}
@article{fds33084,
Author = {A.F. Govindarajan and K. K. Halanych. Cunningham},
Title = {Mitochondrial evolution and phylogeography in the hydrozoan
Obelia geniculata (Cnidaria)},
Journal = {Marine Biology},
Volume = {146},
Pages = {213-222},
Year = {2005},
Month = {January},
Key = {fds33084}
}
@article{Emlen05,
Author = {D. J. Emlen J. Marangelo B. Ball C.W. Cunningham},
Title = {Diversity in the weapons of sexual selection: horn evolution
in the beetle genus onthophagus (coleoptera:
scarabaeidae)},
Journal = {Evolution},
Volume = {59},
Number = {5},
Pages = {1060-1084},
Year = {2005},
Key = {Emlen05}
}
@booklet{Riginos04,
Author = {C. Riginos and M. J. Hickerson and C. M. Henzler and C. W.
Cunningham},
Title = {Differential patterns of male and female mtDNA exchange
across the Atlantic Ocean in the blue mussel, Mytilus
edulis},
Journal = {Evolution},
Volume = {58},
Number = {11},
Pages = {2438 -- 2451},
Year = {2004},
Month = {November},
Key = {Riginos04}
}
@booklet{Wares02,
Author = {J. P. Wares and D. S. Goldwater and B. Y. Kong and C. W.
Cunningham},
Title = {Refuting a controversial case of a human-mediated marine
species introduction},
Journal = {Ecology Letters},
Volume = {5},
Number = {4},
Pages = {577 -- 584},
Year = {2002},
Month = {July},
Key = {Wares02}
}
@booklet{Hahn02,
Author = {M. W. Hahn and M. D. Rausher and C. W. Cunningham},
Title = {Distinguishing between selection and population expansion in
an experimental lineage of bacteriophage
T7},
Journal = {Genetics},
Volume = {161},
Number = {1},
Pages = {11 -- 20},
Year = {2002},
Month = {May},
Key = {Hahn02}
}
@booklet{Young02,
Author = {A. M. Young and C. Torres and J. E. Mack and C. W.
Cunningham},
Title = {Morphological and genetic evidence for vicariance and
refugium in Atlantic and Gulf of Mexico populations of the
hermit crab Pagurus longicarpus},
Journal = {Marine Biology},
Volume = {140},
Number = {5},
Pages = {1059 -- 1066},
Year = {2002},
Month = {May},
Key = {Young02}
}
@booklet{Buckley02,
Author = {T. R. Buckley and C. W. Cunningham},
Title = {The effects of nucleotide substitution model assumptions on
estimates of nonparametric bootstrap support},
Journal = {Molecular Biology And Evolution},
Volume = {19},
Number = {4},
Pages = {394 -- 405},
Year = {2002},
Month = {April},
Key = {Buckley02}
}
@booklet{Riginos02,
Author = {C. Riginos and K. Sukhdeo and C. W. Cunningham},
Title = {Evidence for selection at multiple allozyme loci across a
mussel hybrid zone},
Journal = {Molecular Biology And Evolution},
Volume = {19},
Number = {3},
Pages = {347 -- 351},
Year = {2002},
Month = {March},
Key = {Riginos02}
}
@booklet{Oakley02,
Author = {T. H. Oakley and C. W. Cunningham},
Title = {Molecular phylogenetic evidence for the independent
evolutionary origin of an arthropod compound
eye},
Journal = {Proceedings Of The National Academy Of Sciences Of The
United States Of America},
Volume = {99},
Number = {3},
Pages = {1426 -- 1430},
Year = {2002},
Month = {February},
Key = {Oakley02}
}
@booklet{Morrison02,
Author = {C. L. Morrison and A. W. Harvey and S. Lavery and K. Tieu and Y. Huang and C. W. Cunningham},
Title = {Mitochondrial gene rearrangements confirm the parallel
evolution of the crab-like form},
Journal = {Proceedings Of The Royal Society Of London Series
B-biological Sciences},
Volume = {269},
Number = {1489},
Pages = {345 -- 350},
Year = {2002},
Month = {February},
Key = {Morrison02}
}
@booklet{Tudge02,
Author = {C. C. Tudge and C. W. Cunningham},
Title = {Molecular phylogeny of the mud lobsters and mud shrimps
(Crustacea : Decapoda : Thalassinidea) using nuclear 18S
rDNA and mitochondrial 16S rDNA},
Journal = {Invertebrate Systematics},
Volume = {16},
Number = {6},
Pages = {839 -- 847},
Year = {2002},
Key = {Tudge02}
}
@booklet{Wares01,
Author = {J. P. Wares and C. W. Cunningham},
Title = {Phylogeography and historical ecology of the North Atlantic
intertidal},
Journal = {Evolution},
Volume = {55},
Number = {12},
Pages = {2455 -- 2469},
Year = {2001},
Month = {December},
Key = {Wares01}
}
@booklet{Wares01a,
Author = {J. P. Wares and S. D. Gaines and C. W. Cunningham},
Title = {A comparative study of asymmetric migration events across a
marine biogeographic boundary},
Journal = {Evolution},
Volume = {55},
Number = {2},
Pages = {295 -- 306},
Year = {2001},
Month = {February},
Key = {Wares01a}
}
@article{fds43824,
Author = {Grosberg, R.K. and C.W. Cunningham},
Title = {Genetic structure in the sea: from populations to
communities},
Series = {pp.61-84},
Booktitle = {Marine Community Ecology},
Publisher = {Sinauer Associates, Sunderland, MA},
Editor = {M.D. Bertness and S. Gaines and M.E. Hay},
Year = {2001},
Key = {fds43824}
}
@booklet{Oakley00,
Author = {T. H. Oakley and C. W. Cunningham},
Title = {Independent contrasts succeed where ancestor reconstruction
fails in a known bacteriophage phylogeny},
Journal = {Evolution},
Volume = {54},
Number = {2},
Pages = {397 -- 405},
Year = {2000},
Month = {April},
Key = {Oakley00}
}
@booklet{Hickerson00,
Author = {M. J. Hickerson and C. W. Cunningham},
Title = {Dramatic mitochondrial gene rearrangements in the hermit
crab Pagurus longicarpus (Crustacea, Anomura)},
Journal = {Molecular Biology And Evolution},
Volume = {17},
Number = {4},
Pages = {639 -- 644},
Year = {2000},
Month = {April},
Key = {Hickerson00}
}
@booklet{Cunningham99,
Author = {C. W. Cunningham},
Title = {Some limitations of ancestral character-state reconstruction
when testing evolutionary hypotheses},
Journal = {Systematic Biology},
Volume = {48},
Number = {3},
Pages = {665 -- 674},
Year = {1999},
Month = {September},
Key = {Cunningham99}
}
@booklet{Kim99,
Author = {J. H. Kim and W. Kim and C. W. Cunningham},
Title = {A new perspective on lower metazoan relationships from 18S
rDNA sequences},
Journal = {Molecular Biology And Evolution},
Volume = {16},
Number = {3},
Pages = {423 -- 427},
Year = {1999},
Month = {March},
Key = {Kim99}
}
@booklet{Stanger-hall98,
Author = {K. Stanger-hall and C. W. Cunningham},
Title = {Support for a monophyletic Lemuriformes: Overcoming
incongruence between data partitions},
Journal = {Molecular Biology And Evolution},
Volume = {15},
Number = {11},
Pages = {1572 -- 1577},
Year = {1998},
Month = {November},
Key = {Stanger-hall98}
}
@booklet{Cunningham98a,
Author = {C. W. Cunningham and K. E. Omland and T. H.
Oakley},
Title = {Reconstructing ancestral character states: a critical
reappraisal},
Journal = {Trends In Ecology \& Evolution},
Volume = {13},
Number = {9},
Pages = {361 -- 366},
Year = {1998},
Month = {September},
Key = {Cunningham98a}
}
@booklet{Cunningham98,
Author = {C. W. Cunningham and H. Zhu and D. M. Hillis},
Title = {Best-fit maximum-likelihood models for phylogenetic
inference: Empirical tests with known phylogenies},
Journal = {Evolution},
Volume = {52},
Number = {4},
Pages = {978 -- 987},
Year = {1998},
Month = {August},
Key = {Cunningham98}
}
@booklet{Cunningham97,
Author = {C. W. Cunningham},
Title = {Is congruence between data partitions a reliable predictor
of phylogenetic accuracy? Empirically testing an iterative
procedure for choosing among phylogenetic
methods},
Journal = {Systematic Biology},
Volume = {46},
Number = {3},
Pages = {464 -- 478},
Year = {1997},
Month = {September},
Key = {Cunningham97}
}
@booklet{Cunningham97a,
Author = {C. W. Cunningham},
Title = {Can three incongruence tests predict when data should be
combined?},
Journal = {Molecular Biology And Evolution},
Volume = {14},
Number = {7},
Pages = {733 -- 740},
Year = {1997},
Month = {July},
Key = {Cunningham97a}
}
@booklet{Cunningham97b,
Author = {C. W. Cunningham and K. Jeng and J. Husti and M. Badgett and I. J. Molineux and D. M. Hillis and J. J.
Bull},
Title = {Parallel molecular evolution of deletions and nonsense
mutations in bacteriophage T7},
Journal = {Molecular Biology And Evolution},
Volume = {14},
Number = {1},
Pages = {113 -- 116},
Year = {1997},
Month = {January},
Key = {Cunningham97b}
}
@booklet{Huelsenbeck96,
Author = {J. P. Huelsenbeck and J. J. Bull and C. W.
Cunningham},
Title = {Combining data in phylogenetic analysis},
Journal = {Trends In Ecology \& Evolution},
Volume = {11},
Number = {4},
Pages = {152 -- 158},
Year = {1996},
Month = {April},
Key = {Huelsenbeck96}
}
@booklet{Bridge95,
Author = {D. Bridge and C. W. Cunningham and R. Desalle and L. W.
Buss},
Title = {Class-level relationships in the phylum cnidaria - molecular
and morphological evidence},
Journal = {Molecular Biology And Evolution},
Volume = {12},
Number = {4},
Pages = {679 -- 689},
Year = {1995},
Month = {July},
Key = {Bridge95}
}
@booklet{Huelsenbeck94,
Author = {J. P. Huelsenbeck and D. L. Swofford and C. W. Cunningham and J. J. Bull and P. J. Waddell},
Title = {Is character weighting a panacea for the problem of data
heterogeneity in phylogenetic analysis},
Journal = {Systematic Biology},
Volume = {43},
Number = {2},
Pages = {288 -- 291},
Year = {1994},
Month = {June},
Key = {Huelsenbeck94}
}
@booklet{Hillis94,
Author = {D. M. Hillis and J. P. Huelsenbeck and C. W.
Cunningham},
Title = {Application and accuracy of molecular phylogenies},
Journal = {Science},
Volume = {264},
Number = {5159},
Pages = {671 -- 677},
Year = {1994},
Month = {April},
Key = {Hillis94}
}
@booklet{Bull93a,
Author = {J. J. Bull and J. P. Huelsenbeck and C. W. Cunningham and D.
L. Swofford and P. J. Waddell},
Title = {Partitioning and combining data in phylogenetic
analysis},
Journal = {Systematic Biology},
Volume = {42},
Number = {3},
Pages = {384 -- 397},
Year = {1993},
Month = {September},
Key = {Bull93a}
}
@booklet{Bull93,
Author = {J. J. Bull and C. W. Cunningham and I. J. Molineux and M. R.
Badgett and D. M. Hillis},
Title = {Experimental molecular evolution of bacteriophage-t7},
Journal = {Evolution},
Volume = {47},
Number = {4},
Pages = {993 -- 1007},
Year = {1993},
Month = {August},
Key = {Bull93}
}
@booklet{Cunningham93,
Author = {C. W. Cunningham and L. W. Buss},
Title = {Molecular evidence for multiple episodes of pedomorphosis in
the family hydractiniidae},
Journal = {Biochemical Systematics And Ecology},
Volume = {21},
Number = {1},
Pages = {57 -- 69},
Year = {1993},
Month = {January},
Key = {Cunningham93}
}
@booklet{Bridge92,
Author = {D. Bridge and C. W. Cunningham and B. Schierwater and R.
Desalle and L. W. Buss},
Title = {Class-level relationships in the phylum cnidaria - evidence
from mitochondrial genome structure},
Journal = {Proceedings Of The National Academy Of Sciences Of The
United States Of America},
Volume = {89},
Number = {18},
Pages = {8750 -- 8753},
Year = {1992},
Month = {September},
Key = {Bridge92}
}
@booklet{Cunningham92,
Author = {C. W. Cunningham and N. W. Blackstone and L. W.
Buss},
Title = {Evolution of king crabs from hermit-crab
ancestors},
Journal = {Nature},
Volume = {355},
Number = {6360},
Pages = {539 -- 542},
Year = {1992},
Month = {February},
Key = {Cunningham92}
}
@booklet{Cunningham91,
Author = {C. W. Cunningham and L. W. Buss and C. Anderson},
Title = {Molecular and geologic evidence of shared history between
hermit-crabs and the symbiotic genus hydractinia},
Journal = {Evolution},
Volume = {45},
Number = {6},
Pages = {1301 -- 1316},
Year = {1991},
Month = {September},
Key = {Cunningham91}
}
@booklet{Lessios90,
Author = {H. A. Lessios and C. W. Cunningham},
Title = {Gametic incompatibility between species of the sea-urchin
echinometra on the 2 sides of the isthmus of
panama},
Journal = {Evolution},
Volume = {44},
Number = {4},
Pages = {933 -- 941},
Year = {1990},
Month = {July},
Key = {Lessios90}
}
@booklet{Yund87,
Author = {P. O. Yund and C. W. Cunningham and L. W.
Buss},
Title = {Recruitment and postrecruitment interactions in a colonial
hydroid},
Journal = {Ecology},
Volume = {68},
Number = {4},
Pages = {971 -- 982},
Year = {1987},
Month = {August},
Key = {Yund87}
}
@booklet{Bertness81,
Author = {M. D. Bertness and C. W. Cunningham},
Title = {Crab shell crushing predation and gastropod architectural
defense},
Journal = {Journal Of Experimental Marine Biology And
Ecology},
Volume = {50},
Pages = {213 -- 230},
Year = {1981},
Key = {Bertness81}
}
%% Papers Accepted
@article{fds152436,
Author = {M. P. and Miglietta, P. Schuchert and C. W. Cunningham},
Title = {Reconciling genealogical and morphological species in the
Hydractiniidae (Cnidaria, Hydrozoa)},
Journal = {Zoologica Scripta},
Year = {2008},
Month = {December},
Key = {fds152436}
}
%% Edited Volumes
@article{fds53008,
Author = {C. W. Cunningham},
Title = {Coordinating Research on the North Atlantic},
Journal = {Ecology},
Volume = {89},
Number = {11},
Year = {2008},
Month = {November},
Key = {fds53008}
}
Duke Biology Box 90338 Durham, NC 27708 Phone: 919-660-7372 Fax: 919-660-7293