Publications of Clifford Cunningham     :recent first  combined  bibtex listing:

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Papers Published

  1. M. D. Bertness and C. W. Cunningham, Crab shell crushing predation and gastropod architectural defense, Journal Of Experimental Marine Biology And Ecology, vol. 50 (1981), pp. 213 -- 230 .
  2. P. O. Yund and C. W. Cunningham and L. W. Buss, Recruitment and postrecruitment interactions in a colonial hydroid, Ecology, vol. 68 no. 4 (August, 1987), pp. 971 -- 982 .
  3. H. A. Lessios and C. W. Cunningham, Gametic incompatibility between species of the sea-urchin echinometra on the 2 sides of the isthmus of panama, Evolution, vol. 44 no. 4 (July, 1990), pp. 933 -- 941 .
  4. C. W. Cunningham and L. W. Buss and C. Anderson, Molecular and geologic evidence of shared history between hermit-crabs and the symbiotic genus hydractinia, Evolution, vol. 45 no. 6 (September, 1991), pp. 1301 -- 1316 .
  5. C. W. Cunningham and N. W. Blackstone and L. W. Buss, Evolution of king crabs from hermit-crab ancestors, Nature, vol. 355 no. 6360 (February, 1992), pp. 539 -- 542 .
  6. D. Bridge and C. W. Cunningham and B. Schierwater and R. Desalle and L. W. Buss, Class-level relationships in the phylum cnidaria - evidence from mitochondrial genome structure, Proceedings Of The National Academy Of Sciences Of The United States Of America, vol. 89 no. 18 (September, 1992), pp. 8750 -- 8753 .
  7. C. W. Cunningham and L. W. Buss, Molecular evidence for multiple episodes of pedomorphosis in the family hydractiniidae, Biochemical Systematics And Ecology, vol. 21 no. 1 (January, 1993), pp. 57 -- 69 .
  8. J. J. Bull and C. W. Cunningham and I. J. Molineux and M. R. Badgett and D. M. Hillis, Experimental molecular evolution of bacteriophage-t7, Evolution, vol. 47 no. 4 (August, 1993), pp. 993 -- 1007 .
  9. J. J. Bull and J. P. Huelsenbeck and C. W. Cunningham and D. L. Swofford and P. J. Waddell, Partitioning and combining data in phylogenetic analysis, Systematic Biology, vol. 42 no. 3 (September, 1993), pp. 384 -- 397 .
  10. D. M. Hillis and J. P. Huelsenbeck and C. W. Cunningham, Application and accuracy of molecular phylogenies, Science, vol. 264 no. 5159 (April, 1994), pp. 671 -- 677 .
  11. J. P. Huelsenbeck and D. L. Swofford and C. W. Cunningham and J. J. Bull and P. J. Waddell, Is character weighting a panacea for the problem of data heterogeneity in phylogenetic analysis, Systematic Biology, vol. 43 no. 2 (June, 1994), pp. 288 -- 291 .
  12. D. Bridge and C. W. Cunningham and R. Desalle and L. W. Buss, Class-level relationships in the phylum cnidaria - molecular and morphological evidence, Molecular Biology And Evolution, vol. 12 no. 4 (July, 1995), pp. 679 -- 689 .
  13. J. P. Huelsenbeck and J. J. Bull and C. W. Cunningham, Combining data in phylogenetic analysis, Trends In Ecology \& Evolution, vol. 11 no. 4 (April, 1996), pp. 152 -- 158 .
  14. C. W. Cunningham and K. Jeng and J. Husti and M. Badgett and I. J. Molineux and D. M. Hillis and J. J. Bull, Parallel molecular evolution of deletions and nonsense mutations in bacteriophage T7, Molecular Biology And Evolution, vol. 14 no. 1 (January, 1997), pp. 113 -- 116 .
  15. C. W. Cunningham, Can three incongruence tests predict when data should be combined?, Molecular Biology And Evolution, vol. 14 no. 7 (July, 1997), pp. 733 -- 740 .
  16. C. W. Cunningham, Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods, Systematic Biology, vol. 46 no. 3 (September, 1997), pp. 464 -- 478 .
  17. C. W. Cunningham and H. Zhu and D. M. Hillis, Best-fit maximum-likelihood models for phylogenetic inference: Empirical tests with known phylogenies, Evolution, vol. 52 no. 4 (August, 1998), pp. 978 -- 987 .
  18. C. W. Cunningham and K. E. Omland and T. H. Oakley, Reconstructing ancestral character states: a critical reappraisal, Trends In Ecology \& Evolution, vol. 13 no. 9 (September, 1998), pp. 361 -- 366 .
  19. K. Stanger-hall and C. W. Cunningham, Support for a monophyletic Lemuriformes: Overcoming incongruence between data partitions, Molecular Biology And Evolution, vol. 15 no. 11 (November, 1998), pp. 1572 -- 1577 .
  20. J. H. Kim and W. Kim and C. W. Cunningham, A new perspective on lower metazoan relationships from 18S rDNA sequences, Molecular Biology And Evolution, vol. 16 no. 3 (March, 1999), pp. 423 -- 427 .
  21. C. W. Cunningham, Some limitations of ancestral character-state reconstruction when testing evolutionary hypotheses, Systematic Biology, vol. 48 no. 3 (September, 1999), pp. 665 -- 674 .
  22. T. H. Oakley and C. W. Cunningham, Independent contrasts succeed where ancestor reconstruction fails in a known bacteriophage phylogeny, Evolution, vol. 54 no. 2 (April, 2000), pp. 397 -- 405 .
  23. M. J. Hickerson and C. W. Cunningham, Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, Anomura), Molecular Biology And Evolution, vol. 17 no. 4 (April, 2000), pp. 639 -- 644 .
  24. Grosberg, R.K. and C.W. Cunningham, Genetic structure in the sea: from populations to communities, in Marine Community Ecology, pp.61-84, edited by M.D. Bertness, S. Gaines, and M.E. Hay (2001), Sinauer Associates, Sunderland, MA .
  25. J. P. Wares and S. D. Gaines and C. W. Cunningham, A comparative study of asymmetric migration events across a marine biogeographic boundary, Evolution, vol. 55 no. 2 (February, 2001), pp. 295 -- 306 .
  26. J. P. Wares and C. W. Cunningham, Phylogeography and historical ecology of the North Atlantic intertidal, Evolution, vol. 55 no. 12 (December, 2001), pp. 2455 -- 2469 .
  27. C. C. Tudge and C. W. Cunningham, Molecular phylogeny of the mud lobsters and mud shrimps (Crustacea : Decapoda : Thalassinidea) using nuclear 18S rDNA and mitochondrial 16S rDNA, Invertebrate Systematics, vol. 16 no. 6 (2002), pp. 839 -- 847 .
  28. T. H. Oakley and C. W. Cunningham, Molecular phylogenetic evidence for the independent evolutionary origin of an arthropod compound eye, Proceedings Of The National Academy Of Sciences Of The United States Of America, vol. 99 no. 3 (February, 2002), pp. 1426 -- 1430 .
  29. C. L. Morrison and A. W. Harvey and S. Lavery and K. Tieu and Y. Huang and C. W. Cunningham, Mitochondrial gene rearrangements confirm the parallel evolution of the crab-like form, Proceedings Of The Royal Society Of London Series B-biological Sciences, vol. 269 no. 1489 (February, 2002), pp. 345 -- 350 .
  30. C. Riginos and K. Sukhdeo and C. W. Cunningham, Evidence for selection at multiple allozyme loci across a mussel hybrid zone, Molecular Biology And Evolution, vol. 19 no. 3 (March, 2002), pp. 347 -- 351 .
  31. T. R. Buckley and C. W. Cunningham, The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support, Molecular Biology And Evolution, vol. 19 no. 4 (April, 2002), pp. 394 -- 405 .
  32. M. W. Hahn and M. D. Rausher and C. W. Cunningham, Distinguishing between selection and population expansion in an experimental lineage of bacteriophage T7, Genetics, vol. 161 no. 1 (May, 2002), pp. 11 -- 20 .
  33. A. M. Young and C. Torres and J. E. Mack and C. W. Cunningham, Morphological and genetic evidence for vicariance and refugium in Atlantic and Gulf of Mexico populations of the hermit crab Pagurus longicarpus, Marine Biology, vol. 140 no. 5 (May, 2002), pp. 1059 -- 1066 .
  34. J. P. Wares and D. S. Goldwater and B. Y. Kong and C. W. Cunningham, Refuting a controversial case of a human-mediated marine species introduction, Ecology Letters, vol. 5 no. 4 (July, 2002), pp. 577 -- 584 .
  35. C. Riginos and M. J. Hickerson and C. M. Henzler and C. W. Cunningham, Differential patterns of male and female mtDNA exchange across the Atlantic Ocean in the blue mussel, Mytilus edulis, Evolution, vol. 58 no. 11 (November, 2004), pp. 2438 -- 2451 .
  36. D. J. Emlen J. Marangelo B. Ball C.W. Cunningham, Diversity in the weapons of sexual selection: horn evolution in the beetle genus onthophagus (coleoptera: scarabaeidae), Evolution, vol. 59 no. 5 (2005), pp. 1060-1084 .
  37. A.F. Govindarajan, K. K. Halanych. Cunningham, Mitochondrial evolution and phylogeography in the hydrozoan Obelia geniculata (Cnidaria), Marine Biology, vol. 146 (January, 2005), pp. 213-222 .
  38. J. P. Wares and C. W. Cunningham, Diversification before the most recent glaciation in Balanus glandula, Biological Bulletin, vol. 208 no. 1 (February, 2005), pp. 60 -- 68 .
  39. C.W. Cunningham, The Right Time for Synthesis in Evolutionary Biology, BioScience, vol. 55 no. 2 (February, 2005), pp. 99 .
  40. C. Riginos and C.W. Cunningham, Invited Review: Local adaptation and species segregation in two mussel (Mytilus edulis X Mytilus trossulus) hybrid zones, Molecular Ecology, vol. 14 no. 2 (February, 2005), pp. 381-400 .
  41. M.J. Hickerson C.W. Cunningham, Contrasting quaternary histories in an ecologically divergent pair of low-dispersing intertidal fish (Xiphister) revealed by multi-locus DNA analysis, Evolution, vol. 59 (February, 2005), pp. 344-360 .
  42. M. J. Hickerson and C. W. Cunningham, Nearshore fish (Pholis gunnellus) persists across the North Atlantic through multiple glacial episodes, Molecular Ecology, vol. 15 no. 13 (November, 2006), pp. 4095 -- 4107 .
  43. C. Riginos and C. W. Cunningham, Hybridization in postglacial marine habitats, Molecular Ecology, vol. 16 no. 19 (October, 2007), pp. 3971 -- 3972 .
  44. G. R. Bigg and C. W. Cunningham and G. Ottersen and G. H. Pogson and M. R. Wadley and P. Williamson, Ice-age survival of Atlantic cod: agreement between palaeoecology models and genetics, Proceedings Of The Royal Society B-biological Sciences, vol. 275 no. 1631 (January, 2008), pp. 163 -172 (I was the major author of this paper, but we chose alphabetical order..) .
  45. C. W. Cunningham, How to use genetic data to distinguish between natural and human-mediated introduction of Littorina littorea to North America, Biological Invasions, vol. 10 no. 1 (January, 2008), pp. 1 -- 6 .
  46. A. Lindner, S. D. Cairns, C. W. CUNNINGHAM, Multiple origins of shallow-water corals from deep-sea ancestors, PLOs ONE, vol. 3 no. 6 (June, 2008), pp. e2429-e2433 .
  47. D.M. Percy, A. Garver, W.L. Wagner, H.F. James, C.W. Cunningham, S.E. Miller, R.C. Fleischer, Progressive island colonization and ancient origin of Hawaiian Metrosideros (Myrtaceae), Proc. Roy. Soc. Ser. B, vol. 275 (July, 2008), pp. 1479-1490 .
  48. C.W. Cunningham, Lessons Learned from Coordinating Research on the North Atlantic, edited by C.W. Cunningham, Ecology, vol. 89 no. 11 (November, 2008), pp. S1-S2 .
  49. J.C. Regier, J.W. Schultz, A.R.D. Ganley, A. Hussey, D. Shi, B. Ball, A. Zwick, J.E. Stajich, M.P. Cummings, J.W. Martin, C.W. Cunningham, Resolving Arthropod Phylogeny: Exploring Phylogenetic Signal within 41 kb of Protein-Coding Nuclear Gene Sequence, Systematic Biology, vol. 57 no. 6 (December, 2008), pp. 920-938 .

Papers Accepted

  1. M. P., Miglietta, P. Schuchert, C. W. Cunningham, Reconciling genealogical and morphological species in the Hydractiniidae (Cnidaria, Hydrozoa), Zoologica Scripta (December, 2008) .

Edited Volumes

  1. C. W. Cunningham, Coordinating Research on the North Atlantic, Ecology, vol. 89 no. 11 (November, 2008) (I edited this special volume, the only special volume of Ecology accepted in the past 8 years..) .

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