Publications of Gregory A Wray :chronological combined listing:
%% Books
@book{fds29611,
Author = {Ettensohn, C.A. and G. M. Wessell and G. A. Wray},
Title = {Development of Sea Urchins, Ascidians, and Other
Invertebrate Deuterostomes: Experimental
Approaches},
Publisher = {Academic Press, San Diego CA},
Year = {2004},
Key = {fds29611}
}
%% Papers Published
@article{fds151737,
Author = {G.A. Wray and C.C. Babbitt},
Title = {Enhancing gene regulation},
Journal = {Science},
Volume = {321},
Pages = {1300-1301},
Year = {2008},
Key = {fds151737}
}
@article{fds151738,
Author = {J.E. Horvath and D.W. Weisrock and S.L. Embry and I. Fiorentino and J.P.
Balhoff, P. Kappeler and G.A. Wray and H.F. Willard and A.D.
Yoder},
Title = {Development and application of a phylogenetic toolkit:
resolving the evolutionary history of Madagascar's
lemurs},
Journal = {Genome Research},
Volume = {18},
Pages = {489-499},
Year = {2008},
Key = {fds151738}
}
@article{fds140184,
Author = {Haygood, R and O Fedrigo and B Hanson and K-D Yokoyama and GA
Wray},
Title = {Promoter regions of many neural- and nutrition-related genes
have experienced positive selection during human
evolution},
Journal = {Nature Genetics},
Volume = {39},
Pages = {1140-1144},
Year = {2007},
Key = {fds140184}
}
@article{fds140185,
Author = {Babbitt, CC and R Haygood and GA Wray},
Title = {When two is better than one},
Journal = {Cell},
Volume = {19},
Pages = {3-4},
Year = {2007},
Key = {fds140185}
}
@article{fds140186,
Author = {GA Wray},
Title = {The evolutionary significance of cis-regulatory
mutations},
Journal = {Nature Reviews Genetics},
Volume = {8},
Pages = {206-216},
Year = {2007},
Key = {fds140186}
}
@article{fds140187,
Author = {Bowsher, JH and GA Wray and E Abouheif},
Title = {Growth and patterning are evolutionarily dissociated in the
vestigial wing discs of workers of the red imported fire
ant, Solenopsis invicta},
Journal = {Journal of Experimental Zoology},
Volume = {308B},
Pages = {769-776},
Year = {2007},
Key = {fds140187}
}
@article{fds140188,
Author = {Sumrall, CD and GA Wray},
Title = {Developmental control of ambulacral reduction in fossil
echinoderms},
Journal = {Paleobiology},
Volume = {33},
Pages = {149-163},
Year = {2007},
Key = {fds140188}
}
@article{fds52763,
Author = {Tishkoff, S A and F A Reed and A Ranciaro and B F Voight and C C
Babbitt and J S Silverman and K Powell and H Mortensen and J B Hirbo and M
Osman, M Ibrahim and S A Omar and G Lema and T B N and J Ghori and S
Bumpstead, J K Pritchard and G A Wray and P
Deloukas},
Title = {Convergent adaptation in humans: the genetic basis of
lactase persistence in Africa},
Journal = {Nature Genetics},
Volume = {39},
Pages = {31-40},
Year = {2007},
Key = {fds52763}
}
@article{fds52770,
Author = {G A Wray},
Title = {Spot on (and off)},
Journal = {Nature},
Volume = {440},
Pages = {1001-1002},
Year = {2006},
Key = {fds52770}
}
@article{fds52771,
Author = {Rudd, M K and G A Wray and H F Willard},
Title = {The evolutionary dynamics of α-satellite},
Journal = {Genome Research},
Volume = {16},
Pages = {88-96},
Year = {2006},
Key = {fds52771}
}
@article{fds52764,
Author = {Sumrall, C D and G A Wray},
Title = {Developmental control of ambulacral reduction in fossil
echinoderms},
Journal = {Paleobiology},
Volume = {33},
Pages = {149-163},
Year = {2006},
Key = {fds52764}
}
@article{fds52765,
Author = {Romano, L and G A Wray},
Title = {Endo16 is required for gastrulation in the sea urchin
Lytechinus variegatus},
Journal = {Development, Growth, and Differentiation},
Volume = {48},
Pages = {487-497},
Year = {2006},
Key = {fds52765}
}
@article{fds52766,
Author = {Sodergren, E and G M Weinstock and The Sea Urchin Genome
Sequencing Consortium},
Title = {The genome of the sea urchin Stongylocentrotus
purpuratus},
Journal = {Science},
Volume = {314},
Pages = {941-952},
Year = {2006},
Key = {fds52766}
}
@article{fds52767,
Author = {G A Wray},
Title = {The evolution of embryonic gene expression in sea
urchins},
Journal = {Integrative and Comparative Biology},
Volume = {46},
Pages = {233-242},
Year = {2006},
Key = {fds52767}
}
@article{fds52768,
Author = {Loisel, D A and M V Rockman and G A Wray and J Altmann and S
Alberts},
Title = {Ancient polymorphism and functional variation in the primate
MHC-DQA1 5’ cis-regulatory region},
Journal = {Proceedings of the National Academy of Sciences
(USA)},
Volume = {103},
Pages = {16331-16336},
Year = {2006},
Key = {fds52768}
}
@article{fds53110,
Author = {Nyberg, K G and C N Ciampaglio and G A Wray},
Title = {Tracing the ancestry of the great white shark, Carcharodon
carcharias, using morphometric analysis of fossil
teeth},
Journal = {Journal of Vertebrate Paleontology},
Volume = {26},
Pages = {806-814},
Year = {2006},
Key = {fds53110}
}
@article{fds44350,
Author = {Mooi, R and B.David and G.A. Wray},
Title = {Arrays in rays: terminal addition in echinoderms and its
correlation with gene expression.},
Journal = {Evolution & Development},
Volume = {7},
Pages = {542-555},
Year = {2005},
Key = {fds44350}
}
@article{fds29610,
Author = {Rockman, M. V. and M. W. Hahn and N. Soranzo and D. Loisel and D. B.
Goldstein and G. A. Wray},
Title = {Positive selection on MMP3 regulation has shaped heart
disease risk},
Journal = {Current Biology},
Volume = {14},
Pages = {1531-1539},
Year = {2004},
Key = {fds29610}
}
@article{fds29612,
Author = {Wray, G. A. and C. Kitazawa and B. Miner},
Title = {Culture of echinoderm larvae though metamorphosis},
Pages = {75-86},
Booktitle = {Development of Sea Urchins, Ascidians, and Other
Invertebrate Deuterostomes: Experimental
Approaches},
Publisher = {Academic Press, San Diego CA},
Year = {2004},
Key = {fds29612}
}
@article{fds29606,
Author = {Hahn, M.W. and M.V. Rockman and N. Soranzo and D.B. Goldstein and G.A. Wray},
Title = {Population genetic and phylogenetic evidence for positive
selection on regulatory mutations at the Factor VII
locus},
Journal = {Genetics},
Volume = {167},
Pages = {867-877},
Year = {2004},
Key = {fds29606}
}
@article{fds29608,
Author = {Bely, A.E. and G.A. Wray},
Title = {Molecular phylogeny of naidid worms (Annelida:
Clitellata)},
Journal = {Molecular Phylogeny and Evolution},
Volume = {30},
Pages = {50-63},
Year = {2004},
Key = {fds29608}
}
@article{fds17192,
Author = {Rockman, M. V. and M. W. Hahn and N. Soranzo and D. B. Goldstein and G.A. Wray},
Title = {Positive selection on a human-specific transcription factor
binding site regulating IL4 expression},
Journal = {Current Biology},
Volume = {130},
Pages = {2118-2123},
Year = {2003},
Key = {fds17192}
}
@article{fds5030,
Author = {Wray, G.A.},
Title = {Transcriptional regulation: evolution},
Booktitle = {Encyclopedia of the Human Genome},
Publisher = {Nature Publishing Group},
Editor = {D. Cooper},
Year = {2003},
Key = {fds5030}
}
@article{fds5040,
Author = {Hahn, M.W. and J. Staijch and G.A. Wray},
Title = {The effects of selection against spurious transcription
factor binding sites},
Journal = {Molecular Biology and Evolution},
Volume = {20},
Pages = {901-906},
Year = {2003},
Key = {fds5040}
}
@article{fds5041,
Author = {Knott, K.E. and E.J. Balser and W.B. Jaeckle and G.A.
Wray},
Title = {Identification of asteroid genera with species capable of
larval cloning},
Journal = {Biological Bulletin},
Volume = {204},
Pages = {246-255},
Year = {2003},
Key = {fds5041}
}
@article{fds29609,
Author = {G.A. Wray},
Title = {Transcriptional regulation and the evolution of
development},
Journal = {International Journal of Developmental Biology},
Volume = {47},
Pages = {675-684},
Year = {2003},
Key = {fds29609}
}
@article{fds17190,
Author = {Wray, G.A. and M.W. Hahn and E. Abouheif and J.P. Balhoff and M. Pizer and M.V. Rockman and L. Romano},
Title = {The evolution of transcriptional regulation in
eukaryotes},
Journal = {Molecular Biology and Evolution},
Volume = {20},
Pages = {1377-1419},
Year = {2003},
Key = {fds17190}
}
@article{fds17191,
Author = {Romano, L. and G.A. Wray},
Title = {Conservation of endo16 expression in sea urchins despite
divergence in both cis and trans-acting elements of
transcriptional regulation},
Journal = {Development},
Volume = {130},
Pages = {4187-4199},
Year = {2003},
Key = {fds17191}
}
@article{fds5015,
Author = {Rockman, M.V. and G.A. Wray},
Title = {Abundant raw material for cis-regulatory evolution in
humans},
Journal = {Molecular Biology and Evolution},
Volume = {19},
Pages = {1991-2004},
Year = {2002},
Month = {October},
Key = {fds5015}
}
@article{fds5021,
Author = {Bely, A.E. and G.A. Wray},
Title = {Getting a head in the world},
Journal = {Natural History},
Volume = {10/02},
Pages = {30-32},
Year = {2002},
Month = {October},
Key = {fds5021}
}
@article{fds5014,
Author = {Abouheif, E.A. and G.A. Wray},
Title = {Evolution of the gene network underlying wing polyphenism in
ants},
Journal = {Science},
Volume = {297},
Pages = {249-252},
Year = {2002},
Month = {July},
Key = {fds5014}
}
@article{fds5017,
Author = {Lowe, C.J. and L. Issel-Tarver and G.A. Wray},
Title = {Evolution of new developmental roles for orthodenticle and
distal-less in the larvae of echinoderms},
Journal = {Evolution & Development},
Volume = {4},
Pages = {111-123},
Year = {2002},
Month = {February},
Key = {fds5017}
}
@article{fds5020,
Author = {Hahn, M.W. and G.A. Wray},
Title = {The G-value paradox},
Journal = {Evolution & Development},
Volume = {4},
Pages = {73-75},
Year = {2002},
Month = {February},
Key = {fds5020}
}
@article{fds36767,
Author = {Bely, A.E. and G.A. Wray},
Title = {Evolution of regeneration and fission in an annelid:
insights from engrailed- and orthodenticle-class gene
expression},
Journal = {Development},
Volume = {128},
Pages = {2781-2791},
Year = {2001},
Key = {fds36767}
}
@article{fds36768,
Author = {Stone, J.R. and G.A. Wray},
Title = {Rapid appearance of new transcription factor binding sites
by local point mutation},
Journal = {Molecular Biology and Evolution},
Volume = {18},
Pages = {1764-1770},
Year = {2001},
Key = {fds36768}
}
@article{fds36769,
Author = {Wray, G.A.},
Title = {The evolution of embryonic patterning mechanisms in
animals},
Journal = {Seminars in Cell and Developmental Biology},
Volume = {11},
Pages = {353-393},
Year = {2000},
Key = {fds36769}
}
@article{fds36770,
Author = {Knott, K.E. and G.A. Wray},
Title = {Controversy and consensus in asteroid systematics: new
insights into ordinal and familial relationships},
Journal = {American Zoologist},
Volume = {40},
Pages = {382-392},
Year = {2000},
Key = {fds36770}
}
@article{fds36771,
Author = {Wray, G.A. and C.J. Lowe},
Title = {Developmental regulatory genes and echinoderm
evolution},
Journal = {Systematic Biology},
Volume = {49},
Pages = {151-174},
Year = {2000},
Key = {fds36771}
}
@article{fds36772,
Author = {Wray, G.A.},
Title = {Peering ahead (cautiously)},
Journal = {Evolution and Development},
Volume = {2},
Pages = {1-2},
Year = {2000},
Key = {fds36772}
}
@article{fds36773,
Author = {Cameron, RA and G Mahairas and JP Rast and TR Biondi and S Schwartzell and J Wallace and BT Livingston and GA Wray and CA Ettensohn and H Lehrach and RJ Britten and EH Davison and L Hood},
Title = {A sea urchin genome project: sequence scan, virtual map, and
additional resources},
Journal = {Proceedings of the National Academy of Sciences
(USA)},
Volume = {97},
Pages = {9514-9518},
Year = {2000},
Key = {fds36773}
}
%% Papers Submitted
@article{fds152938,
Author = {J. Tung and S. Mukherjee and G.A. Wray},
Title = {Functional cis-regulatory variation is not randomly
distributed in the human genome},
Journal = {Genome Research},
Year = {2008},
Key = {fds152938}
}
@article{fds152947,
Author = {L. R. Warner and C. C. Babbitt and A. E. Primus and T. F. Severson and R. H. Haygood and G.A. Wray},
Title = {Effects of cis-regulatory sequence variation on tyrosine
hydroxylase (TH) expression in primates},
Journal = {Human Molecular Genetics},
Year = {2008},
Key = {fds152947}
}
@article{fds151733,
Author = {J. Tung and A. Primus and A. Bouley and T.F. Severson and S. Alberts and G.A. Wray},
Title = {Evolution of a malaria resistance gene in wild
primates},
Journal = {Nature},
Year = {2008},
Key = {fds151733}
}
@article{fds151734,
Author = {R. Haygood and C.C. Babbitt and O. Fedrigo and G.A.
Wray},
Title = {Positive selection in the human genome exhibits strong
contrasts between coding and noncoding sequences},
Journal = {Science},
Year = {2008},
Key = {fds151734}
}
@article{fds151735,
Author = {C.C. Babbitt and J.S. Silverman and R. Haygood and J.M. Reininga and M.V. Rockman and G.A. Wray},
Title = {Multiple functional variants in cis modulate PDYN
expression},
Journal = {PLoS Genetics},
Year = {2008},
Key = {fds151735}
}
@article{fds151736,
Author = {G.A. Wray and D.A. Garfield},
Title = {The evolution of gene regulation},
Journal = {BioScience},
Year = {2008},
Key = {fds151736}
}
%% Book Chapters
@article{fds151739,
Author = {G.A. Wray},
Title = {Evolutionary synthesis in the genomic era},
Booktitle = {Towards an Extended Evolutionary Synthesis},
Publisher = {MIT Press},
Year = {2009},
Key = {fds151739}
}
@article{fds152937,
Author = {G.A. Wray},
Title = {Evolution and Development},
Booktitle = {Evolution},
Publisher = {Harvard University Press},
Editor = {M. Ruse and J. Travis},
Year = {2009},
Key = {fds152937}
}
%% Book Chapter
@article{fds140263,
Author = {Babbitt, CC and GA Wray},
Title = {Evolution of human gene expression control},
Booktitle = {Encyclopedia of Life Sciences},
Publisher = {Nature Publishing Group},
Year = {2007},
Key = {fds140263}
}
%% Other
@article{fds140265,
Author = {G.A. Wray},
Title = {Guest in radio interview on evolutionary genomics for talk
show "Radio in Vivo"},
Year = {2007},
Month = {February},
Key = {fds140265}
}
@article{fds2125,
Author = {Wray, G.A.},
Title = {Dating branches on the tree of life using
DNA},
Journal = {Genome Biology},
Year = {2001},
Key = {fds2125}
}
@article{fds2127,
Author = {MW Hahn and GA Wray},
Title = {the G-value paradox},
Journal = {Evolution and Development},
Year = {2001},
Key = {fds2127}
}
@article{fds2131,
Author = {Wray, G.A.},
Title = {Gene expression during echinoderm metamorphosis},
Journal = {Gamete},
Volume = {8},
Pages = {S48-S49},
Year = {2000},
Key = {fds2131}
}
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