Publications of Gregory A Wray     :chronological  by type  bibtex listing:

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  1. G.A. Wray, Evolutionary synthesis in the genomic era, in Towards an Extended Evolutionary Synthesis (in press), MIT Press .
  2. G.A. Wray, Evolution and Development, in Evolution, edited by M. Ruse and J. Travis (2009), Harvard University Press .
  3. J. Tung, S. Mukherjee, G.A. Wray, Functional cis-regulatory variation is not randomly distributed in the human genome, Genome Research (2008) (submitted.) .
  4. L. R. Warner, C. C. Babbitt, A. E. Primus,, T. F. Severson, R. H. Haygood,G.A. Wray, Effects of cis-regulatory sequence variation on tyrosine hydroxylase (TH) expression in primates, Human Molecular Genetics (2008) (submitted.) .
  5. J. Tung, A. Primus, A. Bouley, T.F. Severson, S. Alberts and G.A. Wray, Evolution of a malaria resistance gene in wild primates, Nature (2008) (in revision.) .
  6. R. Haygood, C.C. Babbitt, O. Fedrigo, and G.A. Wray, Positive selection in the human genome exhibits strong contrasts between coding and noncoding sequences, Science (submitted) .
  7. C.C. Babbitt, J.S. Silverman, R. Haygood, J.M. Reininga, M.V. Rockman, and G.A. Wray, Multiple functional variants in cis modulate PDYN expression, PLoS Genetics (revision under review) .
  8. G.A. Wray and D.A. Garfield, The evolution of gene regulation, BioScience (submitted) .
  9. G.A. Wray and C.C. Babbitt, Enhancing gene regulation, Science, vol. 321 (2008), pp. 1300-1301 .
  10. J.E. Horvath, D.W. Weisrock, S.L. Embry, I. Fiorentino, J.P. Balhoff, P. Kappeler, G.A. Wray, H.F. Willard, and A.D. Yoder, Development and application of a phylogenetic toolkit: resolving the evolutionary history of Madagascar's lemurs, Genome Research, vol. 18 (2008), pp. 489-499 .
  11. G.A. Wray, Guest in radio interview on evolutionary genomics for talk show "Radio in Vivo" (February 5, 2007) (WCOM.) .
  12. Babbitt, CC and GA Wray, Evolution of human gene expression control, in Encyclopedia of Life Sciences (2007), Nature Publishing Group (electronic resource.) .
  13. Haygood, R, O Fedrigo, B Hanson, K-D Yokoyama, and GA Wray, Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution, Nature Genetics, vol. 39 (2007), pp. 1140-1144 .
  14. Babbitt, CC, R Haygood, and GA Wray, When two is better than one, Cell, vol. 19 (2007), pp. 3-4 .
  15. GA Wray, The evolutionary significance of cis-regulatory mutations, Nature Reviews Genetics, vol. 8 (2007), pp. 206-216 .
  16. Bowsher, JH, GA Wray, and E Abouheif, Growth and patterning are evolutionarily dissociated in the vestigial wing discs of workers of the red imported fire ant, Solenopsis invicta, Journal of Experimental Zoology, vol. 308B (2007), pp. 769-776 .
  17. Sumrall, CD and GA Wray, Developmental control of ambulacral reduction in fossil echinoderms, Paleobiology, vol. 33 (2007), pp. 149-163 .
  18. Tishkoff, S A, F A Reed, A Ranciaro, B F Voight, C C Babbitt, J S Silverman, K Powell, H Mortensen, J B Hirbo, M Osman, M Ibrahim, S A Omar, G Lema, T B N, J Ghori, S Bumpstead, J K Pritchard, G A Wray, and P Deloukas, Convergent adaptation in humans: the genetic basis of lactase persistence in Africa, Nature Genetics, vol. 39 (2007), pp. 31-40 .
  19. G A Wray, Spot on (and off), Nature, vol. 440 (2006), pp. 1001-1002 .
  20. Rudd, M K, G A Wray, and H F Willard, The evolutionary dynamics of α-satellite, Genome Research, vol. 16 (2006), pp. 88-96 .
  21. Sumrall, C D and G A Wray, Developmental control of ambulacral reduction in fossil echinoderms, Paleobiology, vol. 33 (2006), pp. 149-163 .
  22. Romano, L and G A Wray, Endo16 is required for gastrulation in the sea urchin Lytechinus variegatus, Development, Growth, and Differentiation, vol. 48 (2006), pp. 487-497 .
  23. Sodergren, E, G M Weinstock, and The Sea Urchin Genome Sequencing Consortium, The genome of the sea urchin Stongylocentrotus purpuratus, Science, vol. 314 (2006), pp. 941-952 .
  24. G A Wray, The evolution of embryonic gene expression in sea urchins, Integrative and Comparative Biology, vol. 46 (2006), pp. 233-242 .
  25. Loisel, D A, M V Rockman, G A Wray, J Altmann, and S Alberts, Ancient polymorphism and functional variation in the primate MHC-DQA1 5’ cis-regulatory region, Proceedings of the National Academy of Sciences (USA), vol. 103 (2006), pp. 16331-16336 .
  26. Nyberg, K G, C N Ciampaglio, and G A Wray, Tracing the ancestry of the great white shark, Carcharodon carcharias, using morphometric analysis of fossil teeth, Journal of Vertebrate Paleontology, vol. 26 (2006), pp. 806-814 .
  27. Mooi, R, B.David, and G.A. Wray, Arrays in rays: terminal addition in echinoderms and its correlation with gene expression., Evolution & Development, vol. 7 (2005), pp. 542-555 .
  28. Rockman, M. V., M. W. Hahn, N. Soranzo, D. Loisel, D. B. Goldstein, and G. A. Wray, Positive selection on MMP3 regulation has shaped heart disease risk, Current Biology, vol. 14 (2004), pp. 1531-1539 .
  29. Ettensohn, C.A., G. M. Wessell, and G. A. Wray (eds.), Development of Sea Urchins, Ascidians, and Other Invertebrate Deuterostomes: Experimental Approaches (2004), Academic Press, San Diego CA .
  30. Wray, G. A., C. Kitazawa, and B. Miner, Culture of echinoderm larvae though metamorphosis, in Development of Sea Urchins, Ascidians, and Other Invertebrate Deuterostomes: Experimental Approaches (2004), pp. 75-86, Academic Press, San Diego CA .
  31. Hahn, M.W., M.V. Rockman, N. Soranzo, D.B. Goldstein, and G.A. Wray, Population genetic and phylogenetic evidence for positive selection on regulatory mutations at the Factor VII locus, Genetics, vol. 167 (2004), pp. 867-877 .
  32. Bely, A.E. and G.A. Wray, Molecular phylogeny of naidid worms (Annelida: Clitellata), Molecular Phylogeny and Evolution, vol. 30 (2004), pp. 50-63 .
  33. Rockman, M. V., M. W. Hahn, N. Soranzo, D. B. Goldstein, G.A. Wray, Positive selection on a human-specific transcription factor binding site regulating IL4 expression, Current Biology, vol. 130 (2003), pp. 2118-2123 .
  34. Wray, G.A., Transcriptional regulation: evolution, in Encyclopedia of the Human Genome, edited by D. Cooper (2003), Nature Publishing Group .
  35. Hahn, M.W., J. Staijch, and G.A. Wray, The effects of selection against spurious transcription factor binding sites, Molecular Biology and Evolution, vol. 20 (2003), pp. 901-906 .
  36. Knott, K.E., E.J. Balser, W.B. Jaeckle, and G.A. Wray, Identification of asteroid genera with species capable of larval cloning, Biological Bulletin, vol. 204 (2003), pp. 246-255 .
  37. G.A. Wray, Transcriptional regulation and the evolution of development, International Journal of Developmental Biology, vol. 47 (2003), pp. 675-684 .
  38. Wray, G.A., M.W. Hahn, E. Abouheif, J.P. Balhoff, M. Pizer, M.V. Rockman, and L. Romano, The evolution of transcriptional regulation in eukaryotes, Molecular Biology and Evolution, vol. 20 (2003), pp. 1377-1419 .
  39. Romano, L. and G.A. Wray, Conservation of endo16 expression in sea urchins despite divergence in both cis and trans-acting elements of transcriptional regulation, Development, vol. 130 (2003), pp. 4187-4199 .
  40. Rockman, M.V. and G.A. Wray, Abundant raw material for cis-regulatory evolution in humans, Molecular Biology and Evolution, vol. 19 (October, 2002), pp. 1991-2004 .
  41. Bely, A.E. and G.A. Wray, Getting a head in the world, Natural History, vol. 10/02 (October, 2002), pp. 30-32 .
  42. Abouheif, E.A. and G.A. Wray, Evolution of the gene network underlying wing polyphenism in ants, Science, vol. 297 (July, 2002), pp. 249-252 .
  43. Lowe, C.J., L. Issel-Tarver, and G.A. Wray, Evolution of new developmental roles for orthodenticle and distal-less in the larvae of echinoderms, Evolution & Development, vol. 4 (February, 2002), pp. 111-123 .
  44. Hahn, M.W. and G.A. Wray, The G-value paradox, Evolution & Development, vol. 4 (February, 2002), pp. 73-75 .
  45. Wray, G.A., Dating branches on the tree of life using DNA, Genome Biology (2001) .
  46. MW Hahn and GA Wray, the G-value paradox, Evolution and Development (2001) .
  47. Bely, A.E. and G.A. Wray, Evolution of regeneration and fission in an annelid: insights from engrailed- and orthodenticle-class gene expression, Development, vol. 128 (2001), pp. 2781-2791 .
  48. Stone, J.R. and G.A. Wray, Rapid appearance of new transcription factor binding sites by local point mutation, Molecular Biology and Evolution, vol. 18 (2001), pp. 1764-1770 .
  49. Wray, G.A., Gene expression during echinoderm metamorphosis, Gamete, vol. 8 (2000), pp. S48-S49 .
  50. Wray, G.A., The evolution of embryonic patterning mechanisms in animals, Seminars in Cell and Developmental Biology, vol. 11 (2000), pp. 353-393 .
  51. Knott, K.E. and G.A. Wray, Controversy and consensus in asteroid systematics: new insights into ordinal and familial relationships, American Zoologist, vol. 40 (2000), pp. 382-392 .
  52. Wray, G.A. and C.J. Lowe, Developmental regulatory genes and echinoderm evolution, Systematic Biology, vol. 49 (2000), pp. 151-174 .
  53. Wray, G.A., Peering ahead (cautiously), Evolution and Development, vol. 2 (2000), pp. 1-2 .
  54. Cameron, RA, G Mahairas, JP Rast, TR Biondi, S Schwartzell, J Wallace, BT Livingston, GA Wray, CA Ettensohn, H Lehrach, RJ Britten, EH Davison, and L Hood, A sea urchin genome project: sequence scan, virtual map, and additional resources, Proceedings of the National Academy of Sciences (USA), vol. 97 (2000), pp. 9514-9518 .

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