
Papers Published

 Cao, Y; Lu, J, Stochastic dynamical lowrank approximation method,
Journal of Computational Physics, vol. 372
(November, 2018),
pp. 564586 [doi] [abs]
.
 Huang, Y; Lu, J; Ming, P, A Concurrent Global–Local Numerical Method for Multiscale PDEs,
Journal of Scientific Computing, vol. 76 no. 2
(August, 2018),
pp. 11881215 [doi] [abs]
.
 Lu, J; Zhou, Z, Accelerated sampling by infinite swapping of path integral molecular dynamics with surface hopping.,
The Journal of Chemical Physics, vol. 148 no. 6
(February, 2018),
pp. 064110 [doi] [abs]
.
 Cai, Z; Lu, J, A Quantum Kinetic Monte Carlo Method for Quantum ManyBody Spin Dynamics,
Siam Journal on Scientific Computing, vol. 40 no. 3
(January, 2018),
pp. B706B722 [doi] .
 Yu, VWZ; Corsetti, F; García, A; Huhn, WP; Jacquelin, M; Jia, W; Lange, B; Lin, L; Lu, J; Mi, W; Seifitokaldani, A; VázquezMayagoitia, Á; Yang, C; Yang, H; Blum, V, ELSI: A unified software interface for Kohn–Sham electronic structure solvers,
Computer Physics Communications, vol. 222
(January, 2018),
pp. 267285 [doi] .
 Du, Q; Li, XH; Lu, J; Tian, X, A Quasinonlocal Coupling Method for Nonlocal and Local Diffusion Models,
Siam Journal on Numerical Analysis, vol. 56 no. 3
(January, 2018),
pp. 13861404 [doi] .
 Dai, S; Li, B; Lu, J, Convergence of PhaseField Free Energy and Boundary Force for Molecular Solvation,
Archive for Rational Mechanics and Analysis, vol. 227 no. 1
(January, 2018),
pp. 105147 [doi] .
 Zhu, W; Qiu, Q; Wang, B; Lu, J; Sapiro, G; Daubechies, I, Stop memorizing: A datadependent regularization framework for intrinsic pattern learning.,
Corr, vol. abs/1805.07291
(2018) .
 Lu, J; Thicke, K, Cubic scaling algorithms for RPA correlation using interpolative separable density fitting,
Journal of Computational Physics, vol. 351
(December, 2017),
pp. 187202 [doi] .
 Cao, Y; Lu, J, Lindblad equation and its semiclassical limit of the AndersonHolstein model,
Journal of Mathematical Physics, vol. 58 no. 12
(December, 2017),
pp. 122105122105 [doi] [abs]
.
 Lu, J; Zhou, Z, Frozen Gaussian approximation with surface hopping for mixed quantumclassical dynamics: A mathematical justification of fewest switches surface hopping algorithms,
Mathematics of Computation, vol. 87 no. 313
(November, 2017),
pp. 21892232 [doi] .
 Li, L; Liu, JG; Lu, J, Fractional Stochastic Differential Equations Satisfying FluctuationDissipation Theorem,
Journal of Statistical Physics, vol. 169 no. 2
(October, 2017),
pp. 316339 [doi] [abs]
.
 Li, Q; Lu, J; Sun, W, A convergent method for linear halfspace kinetic equations,
ESAIM. Mathematical modelling and numerical analysis = ESAIM. Modelisation mathematique et analyse numerique : M=2AN, vol. 51 no. 5
(September, 2017),
pp. 15831615 [doi] .
 Lu, J; Steinerberger, S, A variation on the DonskerVaradhan inequality for the principal eigenvalue.,
Proceedings. Mathematical, Physical, and Engineering Sciences, vol. 473 no. 2204
(August, 2017),
pp. 20160877 [doi] [abs]
.
 Lu, J; Yang, H, A cubic scaling algorithm for excited states calculations in particle–particle random phase approximation,
Journal of Computational Physics, vol. 340
(July, 2017),
pp. 297308 [doi] .
 Gao, Y; Liu, JG; Lu, J, Continuum Limit of a Mesoscopic Model with Elasticity of Step Motion on Vicinal Surfaces,
Journal of Nonlinear Science, vol. 27 no. 3
(June, 2017),
pp. 873926 [doi] .
 Li, C; Lu, J; Yang, W, On extending KohnSham density functionals to systems with fractional number of electrons.,
The Journal of Chemical Physics, vol. 146 no. 21
(June, 2017),
pp. 214109 [doi] [abs]
.
 Lu, J; Thicke, K, Orbital minimization method with ℓ 1 regularization,
Journal of Computational Physics, vol. 336
(May, 2017),
pp. 87103 [doi] .
 Lu, J; Zhou, Z, Path integral molecular dynamics with surface hopping for thermal equilibrium sampling of nonadiabatic systems.,
Journal of Chemical Physics, vol. 146 no. 15
(April, 2017),
pp. 154110 [doi] [abs]
.
 Watson, AB; Lu, J; Weinstein, MI, Wavepackets in inhomogeneous periodic media: Effective particlefield dynamics and Berry curvature,
Journal of Mathematical Physics, vol. 58 no. 2
(February, 2017),
pp. 021503021503 [doi] .
 Niu, X; Luo, T; Lu, J; Xiang, Y, Dislocation climb models from atomistic scheme to dislocation dynamics,
Journal of the Mechanics and Physics of Solids, vol. 99
(February, 2017),
pp. 242258 [doi] .
 Li, XH; Lu, J, Quasinonlocal Coupling of Nonlocal Diffusions,
Siam Journal on Numerical Analysis, vol. 55 no. 5
(January, 2017),
pp. 23942415 [doi] .
 Lu, J; Yang, H, Preconditioning Orbital Minimization Method for Planewave Discretization,
Multiscale Modeling & Simulation, vol. 15 no. 1
(January, 2017),
pp. 254273 [doi] .
 Lin, L; Lu, J; VandenEijnden, E, A Mathematical Theory of Optimal Milestoning (with a Detour via Exact Milestoning),
Communications on Pure and Applied Mathematics
(January, 2017) [doi] [abs]
.
 Li, Q; Lu, J; Sun, W, Validity and Regularization of Classical HalfSpace Equations,
Journal of Statistical Physics, vol. 166 no. 2
(January, 2017),
pp. 398433 [doi] .
 Li, Q; Lu, J, An asymptotic preserving method for transport equations with oscillatory scattering coefficients,
Multiscale Modeling & Simulation, vol. 15 no. 4
(January, 2017),
pp. 16941718 [doi] [abs]
.
 Gao, Y; Liu, JG; Lu, J, Weak Solution of a Continuum Model For Vicinal Surface in The AttachmentDetachmentLimited Regime,
Siam Journal on Mathematical Analysis, vol. 49 no. 3
(January, 2017),
pp. 17051731 [doi] [abs]
.
 Cornelis, B; Yang, H; Goodfriend, A; Ocon, N; Lu, J; Daubechies, I, Removal of Canvas Patterns in Digital Acquisitions of Paintings.,
Ieee Transactions on Image Processing : a Publication of the Ieee Signal Processing Society, vol. 26 no. 1
(January, 2017),
pp. 160171 [doi] [abs]
.
 Mendl, CB; Lu, J; Lukkarinen, J, Thermalization of oscillator chains with onsite anharmonicity and comparison with kinetic theory.,
Physical Review. E, vol. 94 no. 61
(December, 2016),
pp. 062104 [doi] [abs]
.
 Li, Q; Lu, J; Sun, W, Halfspace kinetic equations with general boundary conditions,
Mathematics of Computation, vol. 86 no. 305
(October, 2016),
pp. 12691301 [doi] .
 Yu, TQ; Lu, J; Abrams, CF; VandenEijnden, E, Multiscale implementation of infiniteswap replica exchange molecular dynamics.,
Proceedings of the National Academy of Sciences of the United States of America, vol. 113 no. 42
(October, 2016),
pp. 1174411749 [doi] [abs]
.
 Lu, J; Zhou, Z, Improved sampling and validation of frozen Gaussian approximation with surface hopping algorithm for nonadiabatic dynamics.,
Journal of Chemical Physics, vol. 145 no. 12
(September, 2016),
pp. 124109 [doi] [abs]
.
 Li, X; Lu, J, Traction boundary conditions for molecular static simulations,
Computer Methods in Applied Mechanics and Engineering, vol. 308
(August, 2016),
pp. 310329 [doi] .
 Lin, L; Lu, J, Decay estimates of discretized Green’s functions for Schrödinger type operators,
Science China Mathematics, vol. 59 no. 8
(August, 2016),
pp. 15611578 [doi] .
 Lai, R; Lu, J, Localized density matrix minimization and linearscaling algorithms,
Journal of Computational Physics, vol. 315
(June, 2016),
pp. 194210 [doi] .
 Lu, J; Ying, L, Sparsifying preconditioner for soliton calculations,
Journal of Computational Physics, vol. 315
(June, 2016),
pp. 458466 [doi] .
 Lu, J; Wirth, B; Yang, H, Combining 2D synchrosqueezed wave packet transform with optimization for crystal image analysis,
Journal of the Mechanics and Physics of Solids, vol. 89
(April, 2016),
pp. 194210 [arXiv:1501.06254], [repository], [doi] [abs]
.
 Chen, J; Lu, J, Analysis of the divideandconquer method for electronic structure calculations,
Mathematics of Computation, vol. 85 no. 302
(January, 2016),
pp. 29192938 [doi] .
 Delgadillo, R; Lu, J; Yang, X, GaugeInvariant Frozen Gaussian Approximation Method for the Schrödinger Equation with Periodic Potentials,
Siam Journal on Scientific Computing, vol. 38 no. 4
(January, 2016),
pp. A2440A2463 [doi] .
 Lu, J; Moroz, V; Muratov, CB, OrbitalFree Density Functional Theory of OutofPlane Charge Screening in Graphene,
Journal of Nonlinear Science, vol. 25 no. 6
(December, 2015),
pp. 13911430 [arXiv:1405.4949], [doi] .
 Li, C; Lu, J; Yang, W, Gentlest ascent dynamics for calculating first excited state and exploring energy landscape of KohnSham density functionals.,
Journal of Chemical Physics, vol. 143 no. 22
(December, 2015),
pp. 224110 [doi] [abs]
.
 Yang, H; Lu, J; Brown, WP; Daubechies, I; Ying, L, Quantitative Canvas Weave Analysis Using 2D Synchrosqueezed Transforms: Application of timefrequency analysis to art investigation,
Ieee Signal Processing Magazine, vol. 32 no. 4
(July, 2015),
pp. 5563 [repository], [doi] .
 Li, Q; Lu, J; Sun, W, Diffusion approximations and domain decomposition method of linear transport equations: Asymptotics and numerics,
Journal of Computational Physics, vol. 292
(July, 2015),
pp. 141167 [arXiv:1409.0476], [doi] [abs]
.
 Lu, J; Mendl, CB, Numerical scheme for a spatially inhomogeneous matrixvalued quantum Boltzmann equation,
Journal of Computational Physics, vol. 291
(June, 2015),
pp. 303316 [arXiv:1408.1782], [doi] .
 Lu, J; Liu, JG; Margetis, D, Emergence of step flow from an atomistic scheme of epitaxial growth in 1+1 dimensions.,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 91 no. 3
(March, 2015),
pp. 032403 [arXiv:1409.0046], [doi] [abs]
.
 Lu, J; Nolen, J, Reactive trajectories and the transition path process,
Probability Theory and Related Fields, vol. 161 no. 12
(February, 2015),
pp. 195244([erratum].)
[arXiv:1303.1744], [doi] .
 Liu, J; Lu, J; Zhou, X, Efficient Rare Event Simulation for Failure Problems in Random Media,
Siam Journal on Scientific Computing, vol. 37 no. 2
(January, 2015),
pp. A609A624 [arXiv:1404.4729], [doi] .
 Yang, H; Lu, J; Ying, L, Crystal Image Analysis Using 2D Synchrosqueezed Transforms,
Multiscale Modeling & Simulation, vol. 13 no. 4
(January, 2015),
pp. 15421572 [arXiv:1402.1262], [repository], [doi] .
 Lu, J; Ying, L, Compression of the electron repulsion integral tensor in tensor hypercontraction format with cubic scaling cost,
Journal of Computational Physics, vol. 302
(2015),
pp. 329335 [arXiv:1410.7757], [doi] [abs]
.
 Lai, R; Lu, J; Osher, S, Density matrix minimization with ${\ell}_1$ regularization,
Communications in Mathematical Sciences, vol. 13 no. 8
(2015),
pp. 20972117 [arXiv:1403.1525], [doi] .
 Lu, J; Marzuola, JL, Strang splitting methods for a quasilinear Schrödinger equation: convergence, instability, and dynamics,
Communications in Mathematical Sciences, vol. 13 no. 5
(2015),
pp. 10511074 [arXiv:1305.7205], [doi] .
 Xian, Y; Thompson, A; Qiu, Q; Nolte, L; Nowacek, D; Lu, J; Calderbank, R; IEEE,, CLASSIFICATION OF WHALE VOCALIZATIONS USING THE WEYL TRANSFORM,
in 2015 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP),
2015 Ieee International Conference on Acoustics, Speech, and Signal Processing (Icassp), vol. 2015August
(2015),
pp. 773777 [doi] [abs]
.
 Lu, J; Otto, F, Nonexistence of a Minimizer for ThomasFermiDiracvon Weizsäcker Model,
Communications on Pure and Applied Mathematics, vol. 67 no. 10
(October, 2014),
pp. 16051617 [doi] .
 Yang, Y; Peng, D; Lu, J; Yang, W, Excitation energies from particleparticle random phase approximation: Davidson algorithm and benchmark studies.,
The Journal of Chemical Physics, vol. 141 no. 12
(September, 2014),
pp. 124104 [doi] [abs]
.
 Lu, J; VandenEijnden, E, Exact dynamical coarsegraining without timescale separation.,
The Journal of Chemical Physics, vol. 141 no. 4
(July, 2014),
pp. 044109 [arXiv:1404.4225], [doi] [abs]
.
 E, W; Lu, J, Mathematical theory of solids: From quantum mechanics to continuum models,
Discrete and Continuous Dynamical Systems Series A, vol. 34 no. 12
(June, 2014),
pp. 50855097 [doi] .
 Kohn, RV; Lu, J; Schweizer, B; Weinstein, MI, A Variational Perspective on Cloaking by Anomalous Localized Resonance,
Communications in Mathematical Physics, vol. 328 no. 1
(May, 2014),
pp. 127 [doi] .
 Lin, L; Lu, J; Shao, S, Analysis of Time Reversible BornOppenheimer Molecular Dynamics, edited by G. Ciccotti, M. Ferrario and Ch. Schuette,
Entropy, vol. 16 no. 1
(January, 2014),
pp. 110137(Special issue on Molecular Dynamics Simulation.)
[doi] .
 Lu, J; Ming, P, Stability Of A ForceBased Hybrid Method With Planar Sharp Interface,
Siam Journal on Numerical Analysis, vol. 52 no. 4
(January, 2014),
pp. 20052026 [doi] .
 Lu, J; Otto, F, Nonexistence of a minimizer for ThomasFermiDiracvon Weizsäcker model,
Communications on Pure and Applied Mathematics, vol. 67 no. 10
(2014),
pp. 16051617 [doi] .
 Lu, J; VandenEijnden, E, Infinite swapping replica exchange molecular dynamics leads to a simple simulation patch using mixture potentials.,
Journal of Chemical Physics, vol. 138 no. 8
(February, 2013),
pp. 084105 [23464138], [doi] [abs]
.
 Lu, J; Ming, P, Convergence of a ForceBased Hybrid Method in Three Dimensions,
Communications on Pure and Applied Mathematics, vol. 66 no. 1
(January, 2013),
pp. 83108 [doi] .
 E, W; Lu, JF; Yang, X, Asymptotic analysis of quantum dynamics in crystals: The BlochWigner transform, Bloch dynamics and Berry phase,
Acta Mathematicae Applicatae Sinica, English Series, vol. 29 no. 3
(2013),
pp. 465476 [doi] [abs]
.
 E, W; Lu, J; Yao, Y, The landscape of complex networks: Critical nodes and a hierarchical decomposition,
Methods and Applications of Analysis, vol. 20 no. 4
(2013),
pp. 383404(Special issue dedicated to Stan Osher's 70th birthday.)
[doi] .
 E, W; Lu, J, Stability and the continuum limit of the spinpolarized ThomasFermiDiracvon Weizsäcker model,
Journal of Mathematical Physics, vol. 53 no. 11
(November, 2012),
pp. 115615115615 [doi] .
 Lin, L; Lu, J; Ying, L; E, W, Optimized local basis set for Kohn–Sham density functional theory,
Journal of Computational Physics, vol. 231 no. 13
(May, 2012),
pp. 45154529 [doi] .
 Lin, L; Lu, J; Ying, L; E, W, Adaptive local basis set for Kohn–Sham density functional theory in a discontinuous Galerkin framework I: Total energy calculation,
Journal of Computational Physics, vol. 231 no. 4
(February, 2012),
pp. 21402154 [doi] .
 E, W; Lu, J, The KohnSham equation for deformed crystals,
Memoirs of the American Mathematical Society, vol. 221 no. 1040
(2012),
pp. 11 [doi] .
 Lu, J; Yang, X, Convergence of frozen Gaussian approximation for highfrequency wave propagation,
Communications on Pure and Applied Mathematics, vol. 65 no. 6
(2012),
pp. 759789 [doi] [abs]
.
 Lu, J; Yang, X, Frozen gaussian approximation for general linear strictly hyperbolic systems: Formulation and eulerian methods,
Multiscale Modeling & Simulation, vol. 10 no. 2
(2012),
pp. 451472 [doi] [abs]
.
 Schütte, C; Noé, F; Lu, J; Sarich, M; VandenEijnden, E, Markov state models based on milestoning,
The Journal of Chemical Physics, vol. 134 no. 20
(May, 2011),
pp. 204105204105 [doi] .
 Lin, L; Lu, J; Ying, L, Fast construction of hierarchical matrix representation from matrix–vector multiplication,
Journal of Computational Physics, vol. 230 no. 10
(May, 2011),
pp. 40714087 [doi] [abs]
.
 Daubechies, I; Lu, J; Wu, HT, Synchrosqueezed wavelet transforms: An empirical mode decompositionlike tool,
Applied and Computational Harmonic Analysis, vol. 30 no. 2
(March, 2011),
pp. 243261 [doi] [abs]
.
 Lin, L; Yang, C; Meza, JC; Lu, J; Ying, L; E, W, SelInvAn Algorithm for Selected Inversion of a Sparse Symmetric Matrix,
Acm Transactions on Mathematical Software, vol. 37 no. 4
(February, 2011),
pp. 119 [doi] .
 E, W; Lu, J, The Electronic Structure of Smoothly Deformed Crystals: Wannier Functions and the Cauchy–Born Rule,
Archive for Rational Mechanics and Analysis, vol. 199 no. 2
(February, 2011),
pp. 407433 [doi] .
 Lin, L; Yang, C; Lu, J; Ying, L; E, W, A Fast Parallel Algorithm for Selected Inversion of Structured Sparse Matrices with Application to 2D Electronic Structure Calculations,
Siam Journal on Scientific Computing, vol. 33 no. 3
(January, 2011),
pp. 13291351 [doi] .
 E, W; Lu, J; Yang, X, Effective Maxwell equations from timedependent density functional theory,
Acta Math. Sin., vol. 32
(2011),
pp. 339339 .
 Lu, J; Yang, X, Frozen Gaussian approximation for high frequency wave propagation,
Communications in Mathematical Sciences, vol. 9 no. 3
(2011),
pp. 663683 [doi] [abs]
.
 E, W; Lu, J, Multiscale modeling,
Scholarpedia, vol. 6
(2011),
pp. 11527 [Multiscale_modeling] .
 E, W; Lu, J, Electronic structure of smoothly deformed crystals: Cauchyborn rule for the nonlinear tightbinding model,
Communications on Pure and Applied Mathematics, vol. 63 no. 11
(November, 2010),
pp. 14321468 [doi] .
 E, W; Li, T; Lu, J, Localized bases of eigensubspaces and operator compression.,
Proceedings of the National Academy of Sciences of the United States of America, vol. 107 no. 4
(January, 2010),
pp. 12731278 [doi] [abs]
.
 GarcíaCervera, CJ; Lu, J; Xuan, Y; E, W, Linearscaling subspaceiteration algorithm with optimally localized nonorthogonal wave functions for KohnSham density functional theory,
Physical Review B, vol. 79 no. 11
(March, 2009),
pp. 115110 [doi] .
 Lin, L; Lu, J; Car, R; E, W, Multipole representation of the Fermi operator with application to the electronic structure analysis of metallic systems,
Physical Review B, vol. 79 no. 11
(March, 2009),
pp. 115133 [doi] .
 Lin, L; Lu, J; Ying, L; Car, R; E, W, Fast algorithm for extracting the diagonal of the inverse matrix with application to the electronic structure analysis of metallic systems,
Commun. Math. Sci., vol. 7
(2009),
pp. 755777 .
 Lin, L; Lu, J; Ying, L; E, W, Polebased approximation of the FermiDirac function,
Chin. Ann. Math. Ser. B, vol. 30
(2009),
pp. 729742 .
 GarciaCervera, CJ; Ren, W; Lu, J; E, W, Sequential multiscale modelling using sparse representation,
Commun. Comput. Phys., vol. 4
(2008),
pp. 10251033 .
 E, W; Lu, J, The Elastic Continuum Limit of the Tight Binding Model*,
Chinese Annals of Mathematics  Series B, vol. 28 no. 6
(December, 2007),
pp. 665676 [doi] .
 E, W; GarcíaCervera, CJ; Lu, J, A sublinear scaling algorithm for computing the electronic structure of materials,
Communications in Mathematical Sciences, vol. 5 no. 4
(2007),
pp. 9991026 [doi] .
 E, W; Lu, J, Seamless multiscale modeling via dynamics on fiber bundles,
Communications in Mathematical Sciences, vol. 5 no. 3
(2007),
pp. 649663 [doi] .
 E, W; Lu, J, The continuum limit and QMcontinuum approximation of quantum mechanical models of solids,
Communications in Mathematical Sciences, vol. 5 no. 3
(2007),
pp. 679696 [doi] .
 E, W; Lu, J; Yang, JZ, Uniform accuracy of the quasicontinuum method,
Physical Review B, vol. 74 no. 21
(December, 2006),
pp. 214115 [doi] .