
Papers Published

 L Fu, W Steinhardt, H Zhao, JE Socolar and P Charbonneau, Hard sphere packings within cylinders.,
Soft matter, vol. 12 no. 9
(February, 2016),
pp. 25052514 [doi] [abs]
.
 C Marcoux, TW Byington, Z Qian, P Charbonneau and JES Socolar, Erratum: Emergence of limitperiodic order in tiling models [Phys. Rev. E 90 , 012136 (2014)],
Physical Review E, vol. 93 no. 2
(February, 2016) [doi] .
 C Marcoux and JES Socolar, Sparse phonon modes of a limitperiodic structure
(January, 2016) [1601.06175v1] [abs]
.
 Y Yang, L Fu, C Marcoux, JE Socolar, P Charbonneau and BB Yellen, Phase transformations in binary colloidal monolayers.,
Soft matter, vol. 11 no. 12
(March, 2015),
pp. 24042415 [doi] [abs]
.
 M Sun, X Cheng and JE Socolar, Regulatory logic and pattern formation in the early sea urchin embryo.,
Journal of theoretical biology, vol. 363
(December, 2014),
pp. 8092 [doi] [abs]
.
 C Marcoux, TW Byington, Z Qian, P Charbonneau and JE Socolar, Emergence of limitperiodic order in tiling models.,
Physical review. E, Statistical, nonlinear, and soft matter physics, vol. 90 no. 1
(July, 2014),
pp. 012136, American Physical Society [PhysRevE.90.012136], [doi] [abs]
.
 X Cheng, DC Lyons, JE Socolar and DR McClay, Delayed transition to new cell fates during cellular reprogramming.,
Developmental biology, vol. 391 no. 2
(July, 2014),
pp. 147157 [S001216061400222X], [doi] [abs]
.
 M Sun, X Cheng and JE Socolar, Causal structure of oscillations in gene regulatory networks: Boolean analysis of ordinary differential equation attractors.,
Chaos, vol. 23 no. 2
(June, 2013),
pp. 025104 [23822502], [doi] [abs]
.
 X Cheng, M Sun and JE Socolar, Autonomous Boolean modelling of developmental gene regulatory networks.,
J R Soc Interface, vol. 10 no. 78
(January, 2013),
pp. 20120574 [23034351], [doi] [abs]
.
 T Byington and JES Socolar, Hierarchical freezing of limitperiodic structure,
Physical Review E
(November, 2012) .
 X Gong and JE Socolar, Quantifying the complexity of random Boolean networks.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 85 no. 6 Pt 2
(June, 2012),
pp. 066107 [23005162], [doi] [abs]
.
 R Durrett, JP Gleeson, AL Lloyd, PJ Mucha, F Shi, D Sivakoff, JE Socolar and C Varghese, Graph fission in an evolving voter model.,
Proc Natl Acad Sci U S A, vol. 109 no. 10
(March, 2012),
pp. 36823687 [22355142], [doi] [abs]
.
 TW Byington and JE Socolar, Hierarchical freezing in a lattice model.,
Phys Rev Lett, vol. 108 no. 4
(January, 2012),
pp. 045701 [22400863], [doi] [abs]
.
 M Sun and JES Socolar, Comparison of autonomous Boolean network dynamics and ODE models,
Chaos
(2012) .
 JES Socolar and JM Taylor, Forcing Nonperiodicity with a Single Tile,
Mathematical Intelligencer, vol. 34 no. 1
(Spring, 2012),
pp. 1828 [doi] [abs]
.
 X Cheng, M Sun and JES Socolar, Autonomous Boolean modelling of developmental gene regulatory networks,
J. Royal Soc. Interface, vol. 10 no. 78
(2012),
pp. 20120574 [23034351], [doi] [abs]
.
 KS Khalil, A Sagastegui, Y Li, MA Tahir, JE Socolar, BJ Wiley and BB Yellen, Binary colloidal structures assembled through Ising interactions.,
Nat Commun, vol. 3
(2012),
pp. 794 [22531179], [doi] [abs]
.
 JE Socolar, Local action, global impact: forcing nonperiodicity with a single structural unit.,
Chaos, vol. 21 no. 4
(December, 2011),
pp. 041106 [22225336], [doi] [abs]
.
 JES Socolar and JM Taylor, An aperiodic hexagonal tile,
Journal of Combinatorial Theory. Series A, vol. 118 no. 8
(2011),
pp. 22072231, Academic Press, Inc. [doi] [abs]
.
 HL Cavalcante, DJ Gauthier, JE Socolar and R Zhang, On the origin of chaos in autonomous Boolean networks.,
Philos Trans A Math Phys Eng Sci, vol. 368 no. 1911
(January, 2010),
pp. 495513 [20008414], [doi] [abs]
.
 V Sevim, X Gong and JE Socolar, Reliability of transcriptional cycles and the yeast cellcycle oscillator.,
PLoS Comput Biol, vol. 6 no. 7
(2010),
pp. e1000842 [20628620], [doi] [abs]
.
 R Zhang, HL de S Cavalcante, Z Gao, DJ Gauthier, JE Socolar, MM Adams and DP Lathrop, Boolean chaos.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 80 no. 4 Pt 2
(October, 2009),
pp. 045202 [19905381], [doi] [abs]
.
 J Norrell and JE Socolar, Boolean modeling of collective effects in complex networks.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 79 no. 6
(June, 2009),
pp. nihpa131303 [19649269], [doi] [abs]
.
 DA Orlando, CY Lin, A Bernard, JY Wang, JE Socolar, ES Iversen, AJ Hartemink and SB Haase, Global control of cellcycle transcription by coupled CDK and network oscillators.,
Nature, vol. 453 no. 7197
(June, 2008),
pp. 944947 [18463633], [doi] [abs]
.
 JES Socolar, TimeDelay Control for Discrete Maps,
scopus
(May, 2008),
pp. 2945 [doi] [abs]
.
 D.A. Orlando, C.Y. Lin, A. Bernard, J.Y. Wang, J.E.S. Socolar, E.S. Iversen, A.J. Hartemink, and S.B. Haase, Global control of cellcycle transcription by coupled CDK and network oscillators,
Nature
(May, 2008) [doi] .
 BP Tighe and JE Socolar, Nonlinear elastic stress response in granular packings.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 77 no. 3 Pt 1
(March, 2008),
pp. 031303 [18517366], [doi] [abs]
.
 AS Ribeiro, SA Kauffman, J LloydPrice, B Samuelsson and JE Socolar, Mutual information in random Boolean models of regulatory networks.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 77 no. 1 Pt 1
(January, 2008),
pp. 011901 [18351870], [doi] [abs]
.
 J.E.S. Socolar, Timedelay control for discrete maps,
in Handbook of Chaos Control, edited by E. Scholl and H. G. Schuster
(December, 2007), WileyVCH Verlag GmbH [html] [abs]
.
 J Norrell, B Samuelsson and JE Socolar, Attractors in continuous and Boolean networks.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 76 no. 4 Pt 2
(October, 2007),
pp. 046122 [17995075], [doi] [abs]
.
 CM Berger, JW Cain, JE Socolar and DJ Gauthier, Control of electrical alternans in simulations of paced myocardium using extended timedelay autosynchronization.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 76 no. 4 Pt 1
(October, 2007),
pp. 041917(Selected for Virtual Journal of Biological Physics Research.)
[17995036], [doi] [abs]
.
 A Shreim, P Grassberger, W Nadler, B Samuelsson, JE Socolar and M Paczuski, Network analysis of the state space of discrete dynamical systems.,
Phys Rev Lett, vol. 98 no. 19
(May, 2007),
pp. 198701 [17677672], [doi] [abs]
.
 JES Socolar, Erratum: The hexagonal parquet tiling, kisohedral monotiles with arbitrarily large k (The Mathematical Intelligencer 29:2 (3338)),
Mathematical Intelligencer, vol. 29 no. 4
(2007),
pp. 6 [doi] .
 JES Socolar, The hexagonal parquet tiling kisohedral monotiles with arbitrarily large k,
Mathematical Intelligencer, vol. 29 no. 2
(2007),
pp. 3338 [pdf], [doi] [abs]
.
 DV Foster, SA Kauffman and JE Socolar, Network growth models and genetic regulatory networks.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 73 no. 3 Pt 1
(March, 2006),
pp. 031912 [16605563], [doi] [abs]
.
 J.E.S. Socolar, Nonlinear Dynamical Systems,
in Complex Systems Science and Biomedicine, edited by Deisboeck and Kresh
(February, 2006), Kluwer .
 B Samuelsson and JES Socolar, Exhaustive percolation on random networks,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 74 no. 3
(2006),
pp. 031912 [e036113], [doi] [abs]
.
 BP Tighe, JE Socolar, DG Schaeffer, WG Mitchener and ML Huber, Force distributions in a triangular lattice of rigid bars.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 72 no. 3 Pt 1
(September, 2005),
pp. 031306 [16241425], [doi] [abs]
.
 S Dealy, S Kauffman and J Socolar, Modeling pathways of differentiation in genetic regulatory networks with Boolean networks,
Complexity, vol. 11 no. 1
(2005),
pp. 5260 [doi] [abs]
.
 I Harrington and JES Socolar, Design and robustness of delayed feedback controllers for discrete systems,
Phys. Rev. E, vol. 69 no. 5 1
(2004),
pp. 56207 [abs]
.
 I Harrington and JES Socolar, Design and robustness of delayed feedback controllers for discrete systems,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 69 no. 5 1
(2004),
pp. 05620710562078 [abs]
.
 P Hövel and JE Socolar, Stability domains for timedelay feedback control with latency.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 68 no. 3 Pt 2
(September, 2003),
pp. 036206 [14524867], [doi] [abs]
.
 JE Socolar and SA Kauffman, Scaling in ordered and critical random boolean networks.,
Phys Rev Lett, vol. 90 no. 6
(February, 2003),
pp. 068702 [12633339], [doi] [abs]
.
 M Otto, JP Bouchaud, P Claudin and JES Socolar, Anisotropy in granular media: Classical elasticity and directedforce chain network,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 67 no. 3 1
(2003),
pp. 031302/1031302/24 [0211015v2], [doi] [abs]
.
 JES Socolar, Discrete models of force chain networks,
Discrete and Continuous Dynamical Systems  Series B, vol. 3 no. 4
(2003),
pp. 601618 [0212162] [abs]
.
 JES Socolar, DG Schaeffer and P Claudin, Erratum: Directed force chain networks and stress response in static granular materials (The European Physical Journal E (2002) 7 (353370)),
European Physical Journal E, vol. 8 no. 4
(2002),
pp. 453 .
 JES Socolar, DG Schaeffer and P Claudin, Directed force chain networks and stress response in static granular materials,
European Physical Journal E, vol. 7 no. 4
(2002),
pp. 353370 [0201242] [abs]
.
 O Beck, A Amann, E Schöll, JES Socolar and W Just, Comparison of timedelayed feedback schemes for spatiotemporal control of chaos in a reactiondiffusion system with global coupling,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 66 no. 1
(2002),
pp. 016213/1016213/6 [doi] [abs]
.
 I Harrington and JE Socolar, Limitation on stabilizing plane waves via timedelay feedback.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 64 no. 5 Pt 2
(November, 2001),
pp. 056206 [11736053], [doi] [abs]
.
 J.E.S Socolar, Chaos,
in Encyclopedia of Physical Science and Technology, 3rd Edition, edited by R. Meyers
(2001), Academic Press(revision of article by R. Jensen.)
.
 JES Socolar, S Richards and WG Wilson, Evolution in a spatially structured population subject to rare epidemics,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 63 no. 4 I
(2001),
pp. 419081419088 [abs]
.
 ME Bleich and JES Socolar, Delayed feedback control of a paced excitable oscillator,
International Journal of Bifurcation and Chaos in Applied Sciences and Engineering, vol. 10 no. 3
(2000),
pp. 603609 [abs]
.
 SA Richards, WG Wilson and JE Socolar, Selection for intermediate mortality and reproduction rates in a spatially structured population.,
Proc Biol Sci, vol. 266 no. 1436
(December, 1999),
pp. 23832388 [10643082], [doi] [abs]
.
 MG Sexton, JE Socolar and DG Schaeffer, Force distribution in a scalar model for noncohesive granular material.,
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 60 no. 2 Pt B
(August, 1999),
pp. 19992008 [11969992] [abs]
.
 DA Egolf and JES Socolar, Failure of linear control in noisy coupled map lattices,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 57 no. 5 SUPPL. A
(1998),
pp. 52715275 [abs]
.
 JES Socolar and DJ Gauthier, Analysis and comparison of multipledelay schemes for controlling unstable fixed points of discrete maps,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 57 no. 6
(1998),
pp. 65896595 [abs]
.
 DW Sukow, ME Bleich, DJ Gauthier and JE Socolar, Controlling chaos in a fast diode resonator using extended timedelay autosynchronization: Experimental observations and theoretical analysis.,
Chaos, vol. 7 no. 4
(December, 1997),
pp. 560576 [12779682], [doi] [abs]
.
 JES Socolar, Average stresses and force fluctuations in noncohesive granular
materials,
arxiv, vol. 57
(October, 1997),
pp. 3204 [9710089v1], [doi] [abs]
.
 ME Bleich, D Hochheiser, JV Moloney and JES Socolar, Controlling extended systems with spatially filtered, timedelayed feedback,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 55 no. 3 SUPPL. A
(1997),
pp. 21192126 [abs]
.
 DJ Gauthier and JES Socolar, Comment on Dynamic Control of Cardiac Alternans,
Physical Review Letters, vol. 79
(1997),
pp. 4938 .
 ME Bleich and JE Socolar, Controlling spatiotemporal dynamics with timedelay feedback.,
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 54 no. 1
(July, 1996),
pp. R17R20 [9965164] .
 ME Bleich and JES Socolar, Stability of periodic orbits controlled by timedelay feedback,
Physics Letters, Section A: General, Atomic and Solid State Physics, vol. 210 no. 12
(1996),
pp. 8794 [abs]
.
 JE Socolar, DW Sukow and DJ Gauthier, Stabilizing unstable periodic orbits in fast dynamical systems.,
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 50 no. 4
(October, 1994),
pp. 32453248 [9962372] .
 DJ Gauthier, DW Sukow, HM Concannon and JE Socolar, Stabilizing unstable periodic orbits in a fast diode resonator using continuous timedelay autosynchronization.,
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 50 no. 3
(September, 1994),
pp. 23432346 [9962244] .
 G Grinstein, C Jayaprakash and JE Socolar, Scale invariance of nonconserved quantities in driven systems.,
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 48 no. 2
(August, 1993),
pp. R643R646 [9960763] .
 JE Socolar, G Grinstein and C Jayaprakash, On selforganized criticality in nonconserving systems.,
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 47 no. 4
(April, 1993),
pp. 23662376 [9960267] .
 J Krug, JE Socolar and G Grinstein, Surface fluctuations and criticality in a class of onedimensional sandpile models.,
Phys Rev A, vol. 46 no. 8
(October, 1992),
pp. R4479R4482 [9908766] .
 J Krug and JE Socolar, Comment on "Scalings of growing selforganized surfaces",
Phys Rev Lett, vol. 68 no. 5
(February, 1992),
pp. 722 [10045973], [doi] .
 JES Socolar, Theory of Packings of Identical Hard Disks Generated by Ballistic Deposition,
Europhys. Lett., vol. 18
(1992),
pp. 39 .
 J.E.S. Socolar, Growth Rules for Quasicrystals,
in Quasicrystals: The State of the Art, edited by D. DiVincenzo and P. Steinhardt
(1991), World Scientific, Singapore .
 J.E.S. Socolar, The Alternation Condition and 2D Quasicrystals,
in Quasicrystals, Springer Series in SolidState Sciences, edited by T. Fujiwara and T. Ogawa, vol. 93
(1990), SpringerVerlag, Berlin .
 JES Socolar, Weak matching rules for quasicrystals,
Communications in Mathematical Physics, vol. 129 no. 3
(1990),
pp. 599619 [doi] [abs]
.
 JE Socolar, Simple octagonal and dodecagonal quasicrystals.,
Phys Rev B Condens Matter, vol. 39 no. 15
(May, 1989),
pp. 1051910551 [9947860] .
 G Onoda, PJ Steinhardt, D DiVincenzo and JE Socolar, Onoda etal. reply.,
Phys Rev Lett, vol. 62 no. 10
(March, 1989),
pp. 1210 [10039608], [doi] .
 J.E.S. Socolar, Locality Constraints and 2D Quasicrystals,
in Quasicrystals  Adriatico Anniversary Research Conference, edited by M.V. Jaric and S. Lundqvist
(1989), World Scientific, Singapore .
 GY Onoda, PJ Steinhardt, DP DiVincenzo and JE Socolar, Growing perfect quasicrystals.,
Phys Rev Lett, vol. 60 no. 25
(June, 1988),
pp. 26532656 [10038414], [doi] .
 JE Socolar and DC Wright, Explanation of peak shapes observed in diffraction from icosahedral quasicrystals.,
Phys Rev Lett, vol. 59 no. 2
(July, 1987),
pp. 221224 [10035483], [doi] .
 TC Lubensky, JE Socolar, PJ Steinhardt, PA Bancel and AP Heiney, Distortion and peak broadening in quasicrystal diffraction patterns.,
Phys Rev Lett, vol. 57 no. 12
(September, 1986),
pp. 14401443 [10033450], [doi] .
 JE Socolar, TC Lubensky and PJ Steinhardt, Phonons, phasons, and dislocations in quasicrystals.,
Phys Rev B Condens Matter, vol. 34 no. 5
(September, 1986),
pp. 33453360 [9940073] .
 JE Socolar and PJ Steinhardt, Quasicrystals. II. Unitcell configurations.,
Phys Rev B Condens Matter, vol. 34 no. 2
(July, 1986),
pp. 617647 [9939668] .
 JES Socolar, Phason Strain in Quasicrystals,
Journal de Physique, vol. C3
(1986),
pp. 217227 .
 JE Socolar, PJ Steinhardt and D Levine, Quasicrystals with arbitrary orientational symmetry., Rapid Communication,
Phys Rev B Condens Matter, vol. 32 no. 8
(October, 1985),
pp. 55475550 [9937798] .
 E MELE and J SOCOLAR, NUMERICALINTEGRATION OF THE TIME EVOLUTION OPERATOR  EXCITEDSTATE DYNAMICS IN CONJUGATED MOLECULES, Quantum Chemistry Symposium,
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, vol. 18
(1984),
pp. 347358 [Gateway.cgi] .
 JP Gollub, EJ Romer and JE Socolar, Trajectory divergence for coupled relaxation oscillators: Measurements and models,
Journal of Statistical Physics, vol. 23 no. 3
(1980),
pp. 321333 [doi] [abs]
.

Papers Submitted

 Y. Yang, L. Fu, C. Marcoux, J. E. S. Socolar, P. Charbonneau, B. B. Yellen, Martensitic transformations in binary colloidal monolayers,
PNAS
(October, 2014) .