Publications of Joshua Socolar    :recent first  alphabetical  combined  bibtex listing:

Papers Published
  1. Hann, CT; Socolar, JES; Steinhardt, PJ, Local growth of icosahedral quasicrystalline tilings, Physical Review B, vol. 94 no. 1 (July, 2016) [1604.02479v1], [doi] [abs] .
  2. Marcoux, C; Socolar, JES, Sparse phonon modes of a limit-periodic structure, Physical Review B - Condensed Matter and Materials Physics, vol. 93 no. 17 (May, 2016), American Physical Society [PhysRevB.93.174102], [doi] [abs] .
  3. Fu, L; Steinhardt, W; Zhao, H; Socolar, JE; Charbonneau, P, Hard sphere packings within cylinders., Soft Matter, vol. 12 no. 9 (March, 2016), pp. 2505-2514 [doi] [abs] .
  4. Marcoux, C; Byington, TW; Qian, Z; Charbonneau, P; Socolar, JES, Erratum: Emergence of limit-periodic order in tiling models [Phys. Rev. E 90 , 012136 (2014)], Physical review. E, vol. 93 no. 2 (February, 2016) [doi] .
  5. Yang, Y; Fu, L; Marcoux, C; Socolar, JE; Charbonneau, P; Yellen, BB, Phase transformations in binary colloidal monolayers., Soft Matter, vol. 11 no. 12 (March, 2015), pp. 2404-2415 [doi] [abs] .
  6. Sun, M; Cheng, X; Socolar, JE, Regulatory logic and pattern formation in the early sea urchin embryo., Journal of Theoretical Biology, vol. 363 (December, 2014), pp. 80-92 [doi] [abs] .
  7. Marcoux, C; Byington, TW; Qian, Z; Charbonneau, P; Socolar, JE, Emergence of limit-periodic order in tiling models., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 90 no. 1 (July, 2014), pp. 012136, American Physical Society [PhysRevE.90.012136], [doi] [abs] .
  8. Cheng, X; Lyons, DC; Socolar, JE; McClay, DR, Delayed transition to new cell fates during cellular reprogramming., Developmental Biology, vol. 391 no. 2 (July, 2014), pp. 147-157 [S001216061400222X], [doi] [abs] .
  9. Sun, M; Cheng, X; Socolar, JE, Causal structure of oscillations in gene regulatory networks: Boolean analysis of ordinary differential equation attractors., Chaos, vol. 23 no. 2 (June, 2013), pp. 025104 [23822502], [doi] [abs] .
  10. Cheng, X; Sun, M; Socolar, JE, Autonomous Boolean modelling of developmental gene regulatory networks., Journal of the Royal Society Interface, vol. 10 no. 78 (January, 2013), pp. 20120574 [23034351], [doi] [abs] .
  11. Byington, T; Socolar, JES, Hierarchical freezing of limit-periodic structure, Physical Review E (November, 2012) .
  12. Gong, X; Socolar, JE, Quantifying the complexity of random Boolean networks., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 85 no. 6 Pt 2 (June, 2012), pp. 066107 [23005162], [doi] [abs] .
  13. Khalil, KS; Sagastegui, A; Li, Y; Tahir, MA; Socolar, JE; Wiley, BJ; Yellen, BB, Binary colloidal structures assembled through Ising interactions., Nature Communications, vol. 3 (April, 2012), pp. 794 [22531179], [doi] [abs] .
  14. Durrett, R; Gleeson, JP; Lloyd, AL; Mucha, PJ; Shi, F; Sivakoff, D; Socolar, JE; Varghese, C, Graph fission in an evolving voter model., Proceedings of the National Academy of Sciences of USA, vol. 109 no. 10 (March, 2012), pp. 3682-3687 [22355142], [doi] [abs] .
  15. Byington, TW; Socolar, JE, Hierarchical freezing in a lattice model., Physical Review Letters, vol. 108 no. 4 (January, 2012), pp. 045701 [22400863], [doi] [abs] .
  16. Sun, M; Socolar, JES, Comparison of autonomous Boolean network dynamics and ODE models, Chaos (2012) .
  17. Socolar, JES; Taylor, JM, Forcing Nonperiodicity with a Single Tile, The Mathematical Intelligencer, vol. 34 no. 1 (Spring, 2012), pp. 18-28 [doi] [abs] .
  18. Cheng, X; Sun, M; Socolar, JES, Autonomous Boolean modelling of developmental gene regulatory networks, J. Royal Soc. Interface, vol. 10 no. 78 (2012), pp. 20120574 [23034351], [doi] [abs] .
  19. Socolar, JE, Local action, global impact: forcing nonperiodicity with a single structural unit., Chaos, vol. 21 no. 4 (December, 2011), pp. 041106 [22225336], [doi] [abs] .
  20. Socolar, JES; Taylor, JM, An aperiodic hexagonal tile, Journal of Combinatorial Theory, Series A, vol. 118 no. 8 (2011), pp. 2207-2231, Academic Press, Inc. [doi] [abs] .
  21. Cavalcante, HL; Gauthier, DJ; Socolar, JE; Zhang, R, On the origin of chaos in autonomous Boolean networks., Philosophical Transactions A, vol. 368 no. 1911 (January, 2010), pp. 495-513 [20008414], [doi] [abs] .
  22. Sevim, V; Gong, X; Socolar, JES, Reliability of transcriptional cycles and the yeast cell-cycle oscillator., PLoS computational biology, vol. 6 no. 7 (2010), pp. e1000842 [20628620], [doi] [abs] .
  23. Zhang, R; de S Cavalcante, HL; Gao, Z; Gauthier, DJ; Socolar, JE; Adams, MM; Lathrop, DP, Boolean chaos., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 80 no. 4 Pt 2 (October, 2009), pp. 045202 [19905381], [doi] [abs] .
  24. Norrell, J; Socolar, JE, Boolean modeling of collective effects in complex networks., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 79 no. 6 (June, 2009), pp. nihpa131303 [19649269], [doi] [abs] .
  25. Orlando, DA; Lin, CY; Bernard, A; Wang, JY; Socolar, JE; Iversen, ES; Hartemink, AJ; Haase, SB, Global control of cell-cycle transcription by coupled CDK and network oscillators., Nature, vol. 453 no. 7197 (June, 2008), pp. 944-947 [18463633], [doi] [abs] .
  26. Socolar, JES, Time-Delay Control for Discrete Maps (May, 2008), pp. 29-45 [doi] [abs] .
  27. D.A. Orlando, C.Y. Lin, A. Bernard, J.Y. Wang, J.E.S. Socolar, E.S. Iversen, A.J. Hartemink, and S.B. Haase, Global control of cell-cycle transcription by coupled CDK and network oscillators, Nature (May, 2008) [doi] .
  28. Tighe, BP; Socolar, JE, Nonlinear elastic stress response in granular packings., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 77 no. 3 Pt 1 (March, 2008), pp. 031303 [18517366], [doi] [abs] .
  29. Ribeiro, AS; Kauffman, SA; Lloyd-Price, J; Samuelsson, B; Socolar, JE, Mutual information in random Boolean models of regulatory networks., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 77 no. 1 Pt 1 (January, 2008), pp. 011901 [18351870], [doi] [abs] .
  30. J.E.S. Socolar, Time-delay control for discrete maps, in Handbook of Chaos Control, edited by E. Scholl and H. G. Schuster (December, 2007), Wiley-VCH Verlag GmbH [html] [abs] .
  31. Norrell, J; Samuelsson, B; Socolar, JE, Attractors in continuous and Boolean networks., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 76 no. 4 Pt 2 (October, 2007), pp. 046122 [17995075], [doi] [abs] .
  32. Berger, CM; Cain, JW; Socolar, JE; Gauthier, DJ, Control of electrical alternans in simulations of paced myocardium using extended time-delay autosynchronization., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 76 no. 4 Pt 1 (October, 2007), pp. 041917(Selected for Virtual Journal of Biological Physics Research.) [17995036], [doi] [abs] .
  33. Shreim, A; Grassberger, P; Nadler, W; Samuelsson, B; Socolar, JE; Paczuski, M, Network analysis of the state space of discrete dynamical systems., Physical Review Letters, vol. 98 no. 19 (May, 2007), pp. 198701 [17677672], [doi] [abs] .
  34. Socolar, JES, Erratum: The hexagonal parquet tiling, k-isohedral monotiles with arbitrarily large k (The Mathematical Intelligencer 29:2 (33-38)), The Mathematical Intelligencer, vol. 29 no. 4 (2007), pp. 6- [doi] .
  35. Socolar, JES, The hexagonal parquet tiling k-isohedral monotiles with arbitrarily large k, The Mathematical Intelligencer, vol. 29 no. 2 (2007), pp. 33-38 [pdf], [doi] [abs] .
  36. Foster, DV; Kauffman, SA; Socolar, JE, Network growth models and genetic regulatory networks., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 73 no. 3 Pt 1 (March, 2006), pp. 031912 [16605563], [doi] [abs] .
  37. J.E.S. Socolar, Nonlinear Dynamical Systems, in Complex Systems Science and Biomedicine, edited by Deisboeck and Kresh (February, 2006), Kluwer .
  38. Samuelsson, B; Socolar, JES, Exhaustive percolation on random networks, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 74 no. 3 (2006), pp. 031912 [e036113], [doi] [abs] .
  39. Tighe, BP; Socolar, JE; Schaeffer, DG; Mitchener, WG; Huber, ML, Force distributions in a triangular lattice of rigid bars., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 72 no. 3 Pt 1 (September, 2005), pp. 031306 [16241425], [doi] [abs] .
  40. Dealy, S; Kauffman, S; Socolar, J, Modeling pathways of differentiation in genetic regulatory networks with Boolean networks, Complexity, vol. 11 no. 1 (2005), pp. 52-60 [doi] [abs] .
  41. Harrington, I; Socolar, JES, Design and robustness of delayed feedback controllers for discrete systems, Phys. Rev. E, vol. 69 no. 5 1 (2004), pp. 56207 [abs] .
  42. Harrington, I; Socolar, JES, Design and robustness of delayed feedback controllers for discrete systems, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 69 no. 5 1 (2004), pp. 056207-1-056207-8 [abs] .
  43. Hövel, P; Socolar, JE, Stability domains for time-delay feedback control with latency., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 68 no. 3 Pt 2 (September, 2003), pp. 036206 [14524867], [doi] [abs] .
  44. Socolar, JE; Kauffman, SA, Scaling in ordered and critical random boolean networks., Physical Review Letters, vol. 90 no. 6 (February, 2003), pp. 068702 [12633339], [doi] [abs] .
  45. Hövel, P; Socolar, JES, Stability domains for time-delay feedback control with latency, Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 68 no. 3 2 (2003), pp. 362061-362067 [abs] .
  46. Otto, M; Bouchaud, JP; Claudin, P; Socolar, JES, Anisotropy in granular media: Classical elasticity and directed-force chain network, Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 67 no. 3 1 (2003), pp. 031302/1-031302/24 [0211015v2], [doi] [abs] .
  47. Socolar, JES, Discrete models of force chain networks, Discrete and Continuous Dynamical Systems - Series B, vol. 3 no. 4 (2003), pp. 601-618 [0212162] [abs] .
  48. Socolar, JES; Schaeffer, DG; Claudin, P, Erratum: Directed force chain networks and stress response in static granular materials (The European Physical Journal E (2002) 7 (353-370)), European Physical Journal E, vol. 8 no. 4 (2002), pp. 453- .
  49. Socolar, JES; Schaeffer, DG; Claudin, P, Directed force chain networks and stress response in static granular materials, European Physical Journal E, vol. 7 no. 4 (2002), pp. 353-370 [0201242] [abs] .
  50. Beck, O; Amann, A; Schöll, E; Socolar, JES; Just, W, Comparison of time-delayed feedback schemes for spatiotemporal control of chaos in a reaction-diffusion system with global coupling, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 66 no. 1 (2002), pp. 016213/1-016213/6 [doi] [abs] .
  51. Harrington, I; Socolar, JE, Limitation on stabilizing plane waves via time-delay feedback., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 64 no. 5 Pt 2 (November, 2001), pp. 056206 [11736053], [doi] [abs] .
  52. J.E.S Socolar, Chaos, in Encyclopedia of Physical Science and Technology, 3rd Edition, edited by R. Meyers (2001), Academic Press(revision of article by R. Jensen.) .
  53. Socolar, JES; Richards, S; Wilson, WG, Evolution in a spatially structured population subject to rare epidemics, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 63 no. 4 I (2001), pp. 419081-419088 [abs] .
  54. Bleich, ME; Socolar, JES, Delayed feedback control of a paced excitable oscillator, International Journal of Bifurcation and Chaos in Applied Sciences and Engineering, vol. 10 no. 3 (2000), pp. 603-609 [abs] .
  55. Richards, SA; Wilson, WG; Socolar, JE, Selection for intermediate mortality and reproduction rates in a spatially structured population., Proceedings of the Royal Society of London: Biological Sciences, vol. 266 no. 1436 (December, 1999), pp. 2383-2388 [10643082], [doi] [abs] .
  56. Sexton, MG; Socolar, JE; Schaeffer, DG, Force distribution in a scalar model for noncohesive granular material., Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 60 no. 2 Pt B (August, 1999), pp. 1999-2008 [11969992] [abs] .
  57. Egolf, DA; Socolar, JES, Failure of linear control in noisy coupled map lattices, Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 57 no. 5 SUPPL. A (1998), pp. 5271-5275 [abs] .
  58. Socolar, JES; Gauthier, DJ, Analysis and comparison of multiple-delay schemes for controlling unstable fixed points of discrete maps, Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 57 no. 6 (1998), pp. 6589-6595 [abs] .
  59. Sukow, DW; Bleich, ME; Gauthier, DJ; Socolar, JE, Controlling chaos in a fast diode resonator using extended time-delay autosynchronization: Experimental observations and theoretical analysis., Chaos, vol. 7 no. 4 (December, 1997), pp. 560-576 [12779682], [doi] [abs] .
  60. Bleich, ME; Hochheiser, D; Moloney, JV; Socolar, JES, Controlling extended systems with spatially filtered, time-delayed feedback, Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 55 no. 3 SUPPL. A (1997), pp. 2119-2126 [abs] .
  61. Gauthier, DJ; Socolar, JES, Comment on Dynamic Control of Cardiac Alternans, Physical Review Letters, vol. 79 (1997), pp. 4938 .
  62. Bleich, ME; Socolar, JE, Controlling spatiotemporal dynamics with time-delay feedback., Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 54 no. 1 (July, 1996), pp. R17-R20 [9965164] .
  63. Bleich, ME; Socolar, JES, Stability of periodic orbits controlled by time-delay feedback, Physics Letters, Section A: General, Atomic and Solid State Physics, vol. 210 no. 1-2 (1996), pp. 87-94 [abs] .
  64. Socolar, JE; Sukow, DW; Gauthier, DJ, Stabilizing unstable periodic orbits in fast dynamical systems., Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 50 no. 4 (October, 1994), pp. 3245-3248 [9962372] .
  65. Gauthier, DJ; Sukow, DW; Concannon, HM; Socolar, JE, Stabilizing unstable periodic orbits in a fast diode resonator using continuous time-delay autosynchronization., Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 50 no. 3 (September, 1994), pp. 2343-2346 [9962244] .
  66. Grinstein, G; Jayaprakash, C; Socolar, JE, Scale invariance of nonconserved quantities in driven systems., Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 48 no. 2 (August, 1993), pp. R643-R646 [9960763] .
  67. Socolar, JE; Grinstein, G; Jayaprakash, C, On self-organized criticality in nonconserving systems., Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 47 no. 4 (April, 1993), pp. 2366-2376 [9960267] .
  68. Krug, J; Socolar, JE; Grinstein, G, Surface fluctuations and criticality in a class of one-dimensional sandpile models., Physical Review A - Atomic, Molecular, and Optical Physics, vol. 46 no. 8 (October, 1992), pp. R4479-R4482 [9908766] .
  69. Krug, J; Socolar, JE, Comment on "Scalings of growing self-organized surfaces", Physical Review Letters, vol. 68 no. 5 (February, 1992), pp. 722 [10045973], [doi] .
  70. Socolar, JES, Theory of Packings of Identical Hard Disks Generated by Ballistic Deposition, Europhys. Lett., vol. 18 (1992), pp. 39 .
  71. J.E.S. Socolar, Growth Rules for Quasicrystals, in Quasicrystals: The State of the Art, edited by D. DiVincenzo and P. Steinhardt (1991), World Scientific, Singapore .
  72. J.E.S. Socolar, The Alternation Condition and 2D Quasicrystals, in Quasicrystals, Springer Series in Solid-State Sciences, edited by T. Fujiwara and T. Ogawa, vol. 93 (1990), Springer-Verlag, Berlin .
  73. Socolar, JES, Weak matching rules for quasicrystals, Communications in Mathematical Physics, vol. 129 no. 3 (1990), pp. 599-619 [doi] [abs] .
  74. Socolar, JE, Simple octagonal and dodecagonal quasicrystals., Physical Review B - Condensed Matter and Materials Physics, vol. 39 no. 15 (May, 1989), pp. 10519-10551 [9947860] .
  75. Onoda, G; Steinhardt, PJ; DiVincenzo, D; Socolar, JE, Onoda etal. reply., Physical Review Letters, vol. 62 no. 10 (March, 1989), pp. 1210 [10039608], [doi] .
  76. J.E.S. Socolar, Locality Constraints and 2D Quasicrystals, in Quasicrystals - Adriatico Anniversary Research Conference, edited by M.V. Jaric and S. Lundqvist (1989), World Scientific, Singapore .
  77. Onoda, GY; Steinhardt, PJ; DiVincenzo, DP; Socolar, JE, Growing perfect quasicrystals., Physical Review Letters, vol. 60 no. 25 (June, 1988), pp. 2653-2656 [10038414], [doi] .
  78. Socolar, JE; Wright, DC, Explanation of peak shapes observed in diffraction from icosahedral quasicrystals., Physical Review Letters, vol. 59 no. 2 (July, 1987), pp. 221-224 [10035483], [doi] .
  79. Lubensky, TC; Socolar, JE; Steinhardt, PJ; Bancel, PA; Heiney, AP, Distortion and peak broadening in quasicrystal diffraction patterns., Physical Review Letters, vol. 57 no. 12 (September, 1986), pp. 1440-1443 [10033450], [doi] .
  80. Socolar, JE; Lubensky, TC; Steinhardt, PJ, Phonons, phasons, and dislocations in quasicrystals., Physical Review B - Condensed Matter and Materials Physics, vol. 34 no. 5 (September, 1986), pp. 3345-3360 [9940073] .
  81. Socolar, JE; Steinhardt, PJ, Quasicrystals. II. Unit-cell configurations., Physical Review B - Condensed Matter and Materials Physics, vol. 34 no. 2 (July, 1986), pp. 617-647 [9939668] .
  82. Socolar, JES, Phason Strain in Quasicrystals, Journal de Physique, vol. C3 (1986), pp. 217-227 .
  83. Socolar, JE; Steinhardt, PJ; Levine, D, Quasicrystals with arbitrary orientational symmetry., Rapid Communication, Physical Review B - Condensed Matter and Materials Physics, vol. 32 no. 8 (October, 1985), pp. 5547-5550 [9937798] .
  84. MELE, E; SOCOLAR, J, NUMERICAL-INTEGRATION OF THE TIME EVOLUTION OPERATOR - EXCITED-STATE DYNAMICS IN CONJUGATED MOLECULES, Quantum Chemistry Symposium, International Journal of Quantum Chemistry, vol. 18 (1984), pp. 347-358 [Gateway.cgi] .
  85. Gollub, JP; Romer, EJ; Socolar, JE, Trajectory divergence for coupled relaxation oscillators: Measurements and models, Journal of Statistical Physics, vol. 23 no. 3 (1980), pp. 321-333 [doi] [abs] .
Papers Submitted
  1. Y. Yang, L. Fu, C. Marcoux, J. E. S. Socolar, P. Charbonneau, B. B. Yellen, Martensitic transformations in binary colloidal monolayers, PNAS (October, 2014) .