
Papers Published
 Socolar, JES; Taylor, JM, An aperiodic hexagonal tile,
Journal of Combinatorial Theory, Series A, vol. 118 no. 8
(November, 2011),
pp. 22072231, Elsevier BV, Orlando, FL, USA, ISSN 00973165 [doi] [abs]
 Socolar, JES; Gauthier, DJ, Analysis and comparison of multipledelay schemes for controlling unstable fixed points of discrete maps,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 57 no. 6
(1998),
pp. 65896595, American Physical Society (APS) [doi] [abs]
 Otto, M; Bouchaud, JP; Claudin, P; Socolar, JES, Anisotropy in granular media: Classical elasticity and directedforce chain network,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 67 no. 3 1
(2003),
pp. 031302/1031302/24, ISSN 1063651X [0211015v2], [doi] [abs]
 Norrell, J; Samuelsson, B; Socolar, JES, Attractors in continuous and Boolean networks.,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 76 no. 4 Pt 2
(October, 2007),
pp. 046122, ISSN 15393755 [17995075], [doi] [abs]
 Cheng, X; Sun, M; Socolar, JES, Autonomous Boolean modelling of developmental gene regulatory networks,
Journal of the Royal Society, Interface, vol. 10 no. 78
(January, 2013),
pp. 20120574 [23034351], [doi] [abs]
 Cheng, X; Sun, M; Socolar, JES, Autonomous Boolean modelling of developmental gene regulatory networks.,
Journal of the Royal Society, Interface, vol. 10 no. 78
(January, 2013),
pp. 20120574 [23034351], [doi] [abs]
 Socolar, JES, Average stresses and force fluctuations in noncohesive granular materials,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 57 no. 3
(March, 1998),
pp. 32043215, AMERICAN PHYSICAL SOC [9710089v1], [doi] [abs]
 Khalil, KS; Sagastegui, A; Li, Y; Tahir, MA; Socolar, JES; Wiley, BJ; Yellen, BB, Binary colloidal structures assembled through Ising interactions.,
Nature Communications, vol. 3
(January, 2012),
pp. 794 [22531179], [doi] [abs]
 Zhang, R; de S Cavalcante, HLD; Gao, Z; Gauthier, DJ; Socolar, JES; Adams, MM; Lathrop, DP, Boolean chaos.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 80 no. 4 Pt 2
(October, 2009),
pp. 045202 [19905381], [doi] [abs]
 Norrell, J; Socolar, JE, Boolean modeling of collective effects in complex networks.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 79 no. 6
(2009),
pp. nihpa131303 [19649269], [doi] [abs]
 Sun, M; Cheng, X; Socolar, JES, Causal structure of oscillations in gene regulatory networks: Boolean analysis of ordinary differential equation attractors.,
Chaos, vol. 23 no. 2
(June, 2013),
pp. 025104 [23822502], [doi] [abs]
 J.E.S Socolar, Chaos,
in Encyclopedia of Physical Science and Technology, 3rd Edition, edited by R. Meyers
(2001), Academic Press (revision of article by R. Jensen.)
 Krug, J; Socolar, JE, Comment on "Scalings of growing selforganized surfaces",
Phys Rev Lett, vol. 68 no. 5
(1992),
pp. 722 [10045973], [doi]
 Gauthier, DJ; Socolar, JES, Comment on “Dynamic Control of Cardiac Alternans”,
Physical Review Letters, vol. 79 no. 24
(December, 1997),
pp. 4938, American Physical Society (APS) [doi] [abs]
 Sun, M; Socolar, JES, Comparison of autonomous Boolean network dynamics and ODE models,
Chaos
(2012)
 Beck, O; Amann, A; Schöll, E; Socolar, JES; Just, W, Comparison of timedelayed feedback schemes for spatiotemporal control of chaos in a reactiondiffusion system with global coupling,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 66 no. 1
(July, 2002),
pp. 016213/1016213/6, American Physical Society (APS), ISSN 15393755 [doi] [abs]
 Berger, CM; Cain, JW; Socolar, JES; Gauthier, DJ, Control of electrical alternans in simulations of paced myocardium using extended timedelay autosynchronization.,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 76 no. 4 Pt 1
(October, 2007),
pp. 041917, ISSN 15393755 (Selected for Virtual Journal of Biological Physics Research.) [17995036], [doi] [abs]
 Sukow, DW; Bleich, ME; Gauthier, DJ; Socolar, JES, Controlling chaos in a fast diode resonator using extended timedelay autosynchronization: Experimental observations and theoretical analysis.,
Chaos, vol. 7 no. 4
(1997),
pp. 560576 [12779682], [doi] [abs]
 Bleich, ME; Hochheiser, D; Moloney, JV; Socolar, JES, Controlling extended systems with spatially filtered, timedelayed feedback,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 55 no. 3
(1997),
pp. 21192126, American Physical Society (APS) [doi] [abs]
 Bleich, ME; Socolar, JES, Controlling spatiotemporal dynamics with timedelay feedback,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 54 no. 1
(1996),
pp. R17R20, American Physical Society (APS), ISSN 1063651X [9965164], [doi]
 BLEICH, MICHAELE; SOCOLAR, JOSHUAES, DELAYED FEEDBACK CONTROL OF A PACED EXCITABLE OSCILLATOR,
International Journal of Bifurcation and Chaos, vol. 10 no. 03
(2000),
pp. 603609, World Scientific Pub Co Pte Lt [doi] [abs]
 Cheng, X; Lyons, DC; Socolar, JES; McClay, DR, Delayed transition to new cell fates during cellular reprogramming.,
Developmental Biology, vol. 391 no. 2
(April, 2014),
pp. 147157, ISSN 00121606 [S001216061400222X], [doi] [abs]
 Harrington, I; Socolar, JES, Design and robustness of delayed feedback controllers for discrete systems,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 69 no. 5
(2004),
pp. 8, ISSN 15393755 [doi] [abs]
 Socolar, JES; Schaeffer, DG; Claudin, P, Directed force chain networks and stress response in static granular materials,
European Physical Journal E, vol. 7 no. 4
(2002),
pp. 353370 [0201242] [abs]
 Socolar, JES, Discrete models of force chain networks,
Discrete and Continuous Dynamical Systems Series B, vol. 3 no. 4
(January, 2003),
pp. 601618, American Institute of Mathematical Sciences (AIMS), ISSN 15313492 [0212162], [doi] [abs]
 Lubensky, TC; Socolar, JE; Steinhardt, PJ; Bancel, PA; Heiney, AP, Distortion and peak broadening in quasicrystal diffraction patterns.,
Phys Rev Lett, vol. 57 no. 12
(1986),
pp. 14401443 [10033450], [doi]
 Marcoux, C; Byington, TW; Qian, Z; Charbonneau, P; Socolar, JES, Emergence of limitperiodic order in tiling models.,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 90 no. 1
(July, 2014),
pp. 012136, American Physical Society, ISSN 15393755 [PhysRevE.90.012136], [doi] [abs]
 Socolar, JES; Schaeffer, DG; Claudin, P, Erratum to: Directed force chain networks and stress response in static granular materials,
The European Physical Journal. E, Soft Matter, vol. 8 no. 4
(July, 2002),
pp. 453453, Springer Nature [doi]
 Marcoux, C; Byington, TW; Qian, Z; Charbonneau, P; Socolar, JES, Erratum: Emergence of limitperiodic order in tiling models (Physical Review E  Statistical, Nonlinear, and Soft Matter Physics (2014) 90 (012136)),
Physical Review. E, vol. 93 no. 2
(February, 2016), American Physical Society (APS), ISSN 24700045 [doi]
 Socolar, JES, Erratum: The hexagonal parquet tiling, kisohedral monotiles with arbitrarily large k (The Mathematical Intelligencer 29:2 (3338)),
The Mathematical Intelligencer, vol. 29 no. 4
(September, 2007),
pp. 6, Springer Nature, ISSN 03436993 [doi]
 Socolar, JES, Evolution in a spatially structured population subject to rare epidemics,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 63 no. 4
(January, 2001),
pp. 419081419088 [doi] [abs]
 Samuelsson, B; Socolar, JES, Exhaustive percolation on random networks,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 74 no. 3
(October, 2006),
pp. 031912, American Physical Society (APS), ISSN 15393755 [e036113], [doi] [abs]
 Socolar, JE; Wright, DC, Explanation of peak shapes observed in diffraction from icosahedral quasicrystals.,
Phys Rev Lett, vol. 59 no. 2
(1987),
pp. 221224 [10035483], [doi]
 Egolf, DA; Socolar, JES, Failure of linear control in noisy coupled map lattices,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 57 no. 5
(January, 1998),
pp. 52715275, American Physical Society (APS) [doi] [abs]
 Sexton, MG; Socolar, JE; Schaeffer, DG, Force distribution in a scalar model for noncohesive granular material.,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 60 no. 2 Pt B
(August, 1999),
pp. 19992008, ISSN 1063651X [11969992] [abs]
 Tighe, BP; Socolar, JES; Schaeffer, DG; Mitchener, WG; Huber, ML, Force distributions in a triangular lattice of rigid bars.,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 72 no. 3 Pt 1
(September, 2005),
pp. 031306, ISSN 15393755 [16241425], [doi] [abs]
 Socolar, JES; Taylor, JM, Forcing Nonperiodicity with a Single Tile,
The Mathematical Intelligencer, vol. 34 no. 1
(Spring, 2012),
pp. 1828, Springer Nature, ISSN 03436993 [doi] [abs]
 Rutkowski, DM; Marcoux, C; Socolar, JES; Hall, CK, Formation of limitperiodic structures by quadrupole particles confined to a triangular lattice,
Physical Review. E, vol. 95 no. 1
(January, 2017), American Physical Society (APS) [doi] [abs]
 D.A. Orlando, C.Y. Lin, A. Bernard, J.Y. Wang, J.E.S. Socolar, E.S. Iversen, A.J. Hartemink, and S.B. Haase, Global control of cellcycle transcription by coupled CDK and network oscillators,
Nature
(May 7, 2008) [doi]
 Orlando, DA; Lin, CY; Bernard, A; Wang, JY; Socolar, JES; Iversen, ES; Hartemink, AJ; Haase, SB, Global control of cellcycle transcription by coupled CDK and network oscillators.,
Nature, vol. 453 no. 7197
(June, 2008),
pp. 944947 [18463633], [doi] [abs]
 Durrett, R; Gleeson, JP; Lloyd, AL; Mucha, PJ; Shi, F; Sivakoff, D; Socolar, JES; Varghese, C, Graph fission in an evolving voter model.,
Proc Natl Acad Sci U S A, vol. 109 no. 10
(2012),
pp. 36823687 [22355142], [doi] [abs]
 Onoda, GY; Steinhardt, PJ; DiVincenzo, DP; Socolar, JE, Growing perfect quasicrystals.,
Phys Rev Lett, vol. 60 no. 25
(1988),
pp. 26532656 [10038414], [doi]
 J.E.S. Socolar, Growth Rules for Quasicrystals,
in Quasicrystals: The State of the Art, edited by D. DiVincenzo and P. Steinhardt
(1991), World Scientific, Singapore
 Fu, L; Steinhardt, W; Zhao, H; Socolar, JES; Charbonneau, P, Hard sphere packings within cylinders.,
Soft Matter, vol. 12 no. 9
(March, 2016),
pp. 25052514, ISSN 1744683X [doi] [abs]
 Byington, TW; Socolar, JES, Hierarchical freezing in a lattice model.,
Phys Rev Lett, vol. 108 no. 4
(January, 2012),
pp. 045701 [22400863], [doi] [abs]
 Byington, T; Socolar, JES, Hierarchical freezing of limitperiodic structure,
Physical Review E
(November, 2012)
 Oğuz, EC; Socolar, JES; Steinhardt, PJ; Torquato, S, Hyperuniformity and antihyperuniformity in onedimensional substitution tilings.,
Acta Crystallographica. Section A, Foundations and Advances, vol. 75 no. Pt 1
(January, 2019),
pp. 313 [doi] [abs]
 Oǧuz, EC; Socolar, JES; Steinhardt, PJ; Torquato, S, Hyperuniformity of quasicrystals,
Physical Review B, vol. 95 no. 5
(February, 2017), American Physical Society (APS) [doi] [abs]
 Harrington, I; Socolar, JE, Limitation on stabilizing plane waves via timedelay feedback.,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 64 no. 5 Pt 2
(November, 2001),
pp. 056206, ISSN 15393755 [11736053], [doi] [abs]
 Socolar, JES, Local action, global impact: forcing nonperiodicity with a single structural unit.,
Chaos, vol. 21 no. 4
(December, 2011),
pp. 041106 [22225336], [doi] [abs]
 Hann, CT; Socolar, JES; Steinhardt, PJ, Local growth of icosahedral quasicrystalline tilings,
Physical Review B, vol. 94 no. 1
(July, 2016), American Physical Society (APS) [1604.02479v1], [doi] [abs]
 J.E.S. Socolar, Locality Constraints and 2D Quasicrystals,
in Quasicrystals  Adriatico Anniversary Research Conference, edited by M.V. Jaric and S. Lundqvist
(1989), World Scientific, Singapore
 Socolar, JES; Lubensky, TC; Kane, CL, Mechanical graphene,
New Journal of Physics, vol. 19 no. 2
(February, 2017),
pp. 025003025003, IOP Publishing [doi]
 Dealy, S; Kauffman, S; Socolar, J, Modeling pathways of differentiation in genetic regulatory networks with Boolean networks,
Complexity, vol. 11 no. 1
(September, 2005),
pp. 5260, WILEY, ISSN 10762787 [doi] [abs]
 Ribeiro, AS; Kauffman, SA; LloydPrice, J; Samuelsson, B; Socolar, JES, Mutual information in random Boolean models of regulatory networks.,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 77 no. 1 Pt 1
(2008),
pp. 011901, ISSN 15393755 [18351870], [doi] [abs]
 Shreim, A; Grassberger, P; Nadler, W; Samuelsson, B; Socolar, JES; Paczuski, M, Network analysis of the state space of discrete dynamical systems.,
Physical Review Letters, vol. 98 no. 19
(May, 2007),
pp. 198701, ISSN 00319007 [17677672], [doi] [abs]
 Foster, DV; Kauffman, SA; Socolar, JES, Network growth models and genetic regulatory networks.,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 73 no. 3 Pt 1
(2006),
pp. 031912, ISSN 15393755 [16605563], [doi] [abs]
 J.E.S. Socolar, Nonlinear Dynamical Systems,
in Complex Systems Science and Biomedicine, edited by Deisboeck and Kresh
(February, 2006), Kluwer [author's comments]
 Tighe, BP; Socolar, JES, Nonlinear elastic stress response in granular packings.,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 77 no. 3 Pt 1
(March, 2008),
pp. 031303, ISSN 15393755 [18517366], [doi] [abs]
 Mele, EJ; Socolar, J, Numerical integration of the time evolution operator: Excited‐state dynamics in conjugated molecules, Quantum Chemistry Symposium,
International Journal of Quantum Chemistry, vol. 26 no. 18 S
(1984),
pp. 347358, WILEY, ISSN 00207608 [Gateway.cgi], [doi] [abs]
 SOCOLAR, JES; GRINSTEIN, G; JAYAPRAKASH, C, ON SELFORGANIZED CRITICALITY IN NONCONSERVING SYSTEMS,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 47 no. 4
(1993),
pp. 23662376, AMERICAN PHYSICAL SOC, ISSN 1063651X [9960267], [doi]
 Cavalcante, HLDDS; Gauthier, DJ; Socolar, JES; Zhang, R, On the origin of chaos in autonomous Boolean networks.,
Philosophical Transactions. Series A, Mathematical, Physical, and Engineering Sciences, vol. 368 no. 1911
(January, 2010),
pp. 495513, ISSN 1364503X [20008414], [doi] [abs]
 Onoda, G; Steinhardt, PJ; DiVincenzo, D; Socolar, JE, Onoda etal. reply.,
Phys Rev Lett, vol. 62 no. 10
(March, 1989),
pp. 1210 [10039608], [doi]
 Pham, AT; Zhuang, Y; Detwiler, P; Socolar, JES; Charbonneau, P; Yellen, BB, Phase diagram and aggregation dynamics of a monolayer of paramagnetic colloids.,
Physical Review. E, vol. 95 no. 51
(May, 2017),
pp. 052607 [doi] [abs]
 Yang, Y; Fu, L; Marcoux, C; Socolar, JES; Charbonneau, P; Yellen, BB, Phase transformations in binary colloidal monolayers.,
Soft Matter, vol. 11 no. 12
(March, 2015),
pp. 24042415, ISSN 1744683X [doi] [abs]
 Socolar, JES, Phason Strain in Quasicrystals,
Journal de Physique, vol. C3
(1986),
pp. 217227
 Socolar, JE; Lubensky, TC; Steinhardt, PJ, Phonons, phasons, and dislocations in quasicrystals.,
Physical Review. B, Condensed Matter, vol. 34 no. 5
(1986),
pp. 33453360, ISSN 01631829 [9940073], [doi]
 Gong, X; Socolar, JES, Quantifying the complexity of random Boolean networks.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 85 no. 6 Pt 2
(2012),
pp. 066107 [23005162], [doi] [abs]
 Socolar, JE; Steinhardt, PJ; Levine, D, Quasicrystals with arbitrary orientational symmetry., Rapid Communication,
Physical Review. B, Condensed Matter, vol. 32 no. 8
(1985),
pp. 55475550, ISSN 01631829 [9937798]
 Socolar, JE; Steinhardt, PJ, Quasicrystals. II. Unitcell configurations.,
Physical Review. B, Condensed Matter, vol. 34 no. 2
(July, 1986),
pp. 617647, ISSN 01631829 [9939668]
 Sun, M; Cheng, X; Socolar, JES, Regulatory logic and pattern formation in the early sea urchin embryo.,
Journal of Theoretical Biology, vol. 363
(December, 2014),
pp. 8092, ISSN 00225193 [doi] [abs]
 Sevim, V; Gong, X; Socolar, JES, Reliability of transcriptional cycles and the yeast cellcycle oscillator.,
Plos Computational Biology, vol. 6 no. 7
(2010),
pp. e1000842, ISSN 15537358 [20628620], [doi] [abs]
 Grinstein, G; Jayaprakash, C; Socolar, JE, Scale invariance of nonconserved quantities in driven systems.,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 48 no. 2
(1993),
pp. R643R646, ISSN 1063651X [9960763]
 Socolar, JES; Kauffman, SA, Scaling in ordered and critical random boolean networks.,
Physical Review Letters, vol. 90 no. 6
(February, 2003),
pp. 068702, ISSN 00319007 [12633339], [doi] [abs]
 Richards, SA; Wilson, WG; Socolar, JE, Selection for intermediate mortality and reproduction rates in a spatially structured population.,
Proceedings of the Royal Society B: Biological Sciences, vol. 266 no. 1436
(December, 1999),
pp. 23832388, ISSN 09628452 [10643082], [doi] [abs]
 Socolar, JE, Simple octagonal and dodecagonal quasicrystals.,
Physical Review. B, Condensed Matter, vol. 39 no. 15
(1989),
pp. 1051910551, ISSN 01631829 [9947860]
 Marcoux, C; Socolar, JES, Sparse phonon modes of a limitperiodic structure,
Physical Review. B, Condensed Matter, vol. 93 no. 17
(May, 2016), American Physical Society, ISSN 01631829 [PhysRevB.93.174102], [doi] [abs]
 Hövel, P; Socolar, JES, Stability domains for timedelay feedback control with latency,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 68 no. 3 2
(2003),
pp. 362061362067 [abs]
 Hövel, P; Socolar, JES, Stability domains for timedelay feedback control with latency.,
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, vol. 68 no. 3 Pt 2
(2003),
pp. 036206, ISSN 15393755 [14524867], [doi] [abs]
 Bleich, ME; Socolar, JES, Stability of periodic orbits controlled by timedelay feedback,
Physics Letters A, vol. 210 no. 12
(1995),
pp. 8794, Elsevier BV [doi] [abs]
 Gauthier, DJ; Sukow, DW; Concannon, HM; Socolar, JE, Stabilizing unstable periodic orbits in a fast diode resonator using continuous timedelay autosynchronization.,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 50 no. 3
(1994),
pp. 23432346, ISSN 1063651X [9962244]
 Socolar, JE; Sukow, DW; Gauthier, DJ, Stabilizing unstable periodic orbits in fast dynamical systems.,
Physical Review E Statistical, Nonlinear, and Soft Matter Physics, vol. 50 no. 4
(1994),
pp. 32453248, ISSN 1063651X [9962372], [doi]
 Krug, J; Socolar, JE; Grinstein, G, Surface fluctuations and criticality in a class of onedimensional sandpile models.,
Physical Review A, vol. 46 no. 8
(October, 1992),
pp. R4479R4482, ISSN 10502947 [9908766]
 J.E.S. Socolar, The Alternation Condition and 2D Quasicrystals,
in Quasicrystals, Springer Series in SolidState Sciences, edited by T. Fujiwara and T. Ogawa, vol. 93
(1990), SpringerVerlag, Berlin
 Socolar, JES, The hexagonal parquet tiling kisohedral monotiles with arbitrarily large k,
The Mathematical Intelligencer, vol. 29 no. 2
(March, 2007),
pp. 3338, Springer Nature, ISSN 03436993 [pdf], [doi] [abs] [author's comments]
 Socolar, JES, Theory of Packings of Identical Hard Disks Generated by Ballistic Deposition,
Epl (Europhysics Letters), vol. 18 no. 1
(1992),
pp. 3944, IOP Publishing [doi]
 Socolar, JES, TimeDelay Control for Discrete Maps
(May, 2008),
pp. 2945, WileyVCH Verlag GmbH & Co. KGaA [doi] [abs]
 J.E.S. Socolar, Timedelay control for discrete maps,
in Handbook of Chaos Control, edited by E. Scholl and H. G. Schuster
(December, 2007), WileyVCH Verlag GmbH [html] [abs]
 Gollub, JP; Romer, EJ; Socolar, JE, Trajectory divergence for coupled relaxation oscillators: Measurements and models,
Journal of Statistical Physics, vol. 23 no. 3
(1980),
pp. 321333, Springer Nature, ISSN 00224715 [doi] [abs]
 Socolar, JES, Weak matching rules for quasicrystals,
Communications in Mathematical Physics, vol. 129 no. 3
(1990),
pp. 599619, Springer Nature, ISSN 00103616 [doi] [abs]
Papers Submitted
 Y. Yang, L. Fu, C. Marcoux, J. E. S. Socolar, P. Charbonneau, B. B. Yellen, Martensitic transformations in binary colloidal monolayers,
PNAS
(October, 2014)
