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Publications of Francois M. Lutzoni    :chronological  combined  bibtex listing:

Books

  1. Pagel, M. and Lutzoni, F., Accounting for phylogenetic uncertainty in comparative studies of evolution and adaptation, in Biological Evolution and Statistical Physics, edited by M. Laessig and A. Valleriani (2002), pp. 151-164, Springer Verlag, Berlin, Germany
  2. Kranner, I., and Lutzoni, F., Evolutionary consequences of transition to a lichen symbiotic state and physiological adaptation to oxidative damage associated with poikilohydry, in Plant response to environmental stresses: From phytohormones to genome reorganization., edited by H. R. Lerner (1999), pp. 591-698, Marcel Dekker, New York
  3. Lutzoni, F., Lichens, in Encyclopedia of Evolution, edited by M. Pagel, vol. 2 (2002), pp. 618-622, Oxford University Press, Oxford, UK
  4. Taylor, J. W., Spatafora, J., O’Donnell, K., Lutzoni, F., James, T., Hibbett, D. S., Geiser, D., Bruns, T. D. and Blackwell, M., The Fungi, in Assembling the Tree of Life, edited by J. Cracraft and M. J. Donoghue (2004), pp. 171-194, Oxford University Press, Oxford, UK

Papers Published

  1. Haridas, S; Albert, R; Binder, M; Bloem, J; LaButti, K; Salamov, A; Andreopoulos, B; Baker, SE; Barry, K; Bills, G; Bluhm, BH; Cannon, C; Castanera, R; Culley, DE; Daum, C; Ezra, D; González, JB; Henrissat, B; Kuo, A; Liang, C; Lipzen, A; Lutzoni, F; Magnuson, J; Mondo, SJ; Nolan, M; Ohm, RA; Pangilinan, J; Park, H-J; Ramírez, L; Alfaro, M; Sun, H; Tritt, A; Yoshinaga, Y; Zwiers, L-H; Turgeon, BG; Goodwin, SB; Spatafora, JW; Crous, PW; Grigoriev, IV, 101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens., Studies in mycology, vol. 96 (June, 2020), pp. 141-153 [doi]  [abs]
  2. Oono, R; Lefèvre, E; Simha, A; Lutzoni, F, A comparison of the community diversity of foliar fungal endophytes between seedling and adult loblolly pines (Pinus taeda)., Fungal biology, vol. 119 no. 10 (October, 2015), pp. 917-928, ISSN 1878-6146 [doi]  [abs]
  3. Spatafora, JW; Sung, GH; Johnson, D; O’Rourke, B; Serdani, M; Spotts, R; Lutzoni, F; Hofstetter, V; Aptroot, A; Roux, C; Miller, A; Geiser, D; Hafellner, J; Hestmark, G; Arnold, AE; Büdel, B; Rauhut, A; Untereiner, WA; Cole, MS; Scheidegger, C; Schultz, M; Sipman, H; Schoch, C, A five-gene phylogeny of Pezizomycotina, Mycologia, vol. 98 no. 6 (2006), pp. 1020-1030, ISSN 0027-5514 [doi]  [abs]
  4. Spatafora, JW; Sung, G-H; Johnson, D; Hesse, C; O'Rourke, B; Serdani, M; Spotts, R; Lutzoni, F; Hofstetter, V; Miadlikowska, J; Reeb, V; Gueidan, C; Fraker, E; Lumbsch, T; Lücking, R; Schmitt, I; Hosaka, K; Aptroot, A; Roux, C; Miller, AN; Geiser, DM; Hafellner, J; Hestmark, G; Arnold, AE; Büdel, B; Rauhut, A; Hewitt, D; Untereiner, WA; Cole, MS; Scheidegger, C; Schultz, M; Sipman, H; Schoch, CL, A five-gene phylogeny of Pezizomycotina., Mycologia, vol. 98 no. 6 (November, 2006), pp. 1018-1028, ISSN 0027-5514 [doi]  [abs]
  5. Lutzoni, FM; Brodo, IM, A generic redelimitation of the Ionaspis-Hymenelia complex (lichenized ascomycotina), Systematic Botany, vol. 20 no. 3 (January, 1995), pp. 224-258, JSTOR [doi]
  6. Hibbett, DS; Binder, M; Bischoff, JF; Blackwell, M; Cannon, PF; Eriksson, O; Huhndorf, S; James, T; Kirk, PM; Lücking, R; Lumbsch, T; Lutzoni, F; Matheny, PB; McLaughlin, DJ; Powell, MJ; Redhead, S; Schoch, CL; Spatafora, JW; Stalpers, JA; Vilgalys, R; Aime, MC; Aptroot, A; Bauer, R; Begerow, D; Benny, GL; Castlebury, LA; Crous, PW; Dai, YC; Gams, W; Geiser, DM; Griffith, GW; Gueidan, C; Hawksworth, DL; Hestmark, G; Hosaka, K; Humber, RA; Hyde, K; Koljalg, U; Kurtzman, CP; Larsson, KH; Lichtward, R; Longcore, J; Miadlikowska, J; Miller, A; Monclavo, JM; Mozley Standridge, S; Oberwinkler, F; Parmasto, E; Reeb, V; Rogers, JD; Roux, C; Ryvarden, L; Sampaio, JP; Schuessler, A; Sugiyama, J; Thorn, RG; Tibell, L; Untereiner, WA; Walker, C; Wang, Z; Weir, A; Weiss, M; White, M; Winka, K; Yao, YJ; Zhang, N, A higher-level phylogenetic classification of the Fungi, Mycological Research, vol. 111 no. Pt 5 (2007), pp. 509-547, ISSN 0953-7562 [doi]  [abs]
  7. Hodkinson, BP; Lutzoni, F, A microbiotic survey of lichen-associated bacteria reveals a new lineage from the Rhizobiales, Symbiosis, vol. 49 no. 3 (January, 2009), pp. 163-180, Springer Nature, ISSN 0334-5114 [doi]  [abs]
  8. Arnold, AE; Carbone, I; Lutzoni, F; May, G, A multidimensional study of endophytic fungal diversity, IMA Fungus, vol. 2 no. 1 (June, 2011), pp. 2-4
  9. Miadlikowska, J; Kauff, F; Högnabba, F; Oliver, JC; Molnár, K; Fraker, E; Gaya, E; Hafellner, J; Hofstetter, V; Gueidan, C; Otálora, MAG; Hodkinson, B; Kukwa, M; Lücking, R; Björk, C; Sipman, HJM; Burgaz, AR; Thell, A; Passo, A; Myllys, L; Goward, T; Fernández-Brime, S; Hestmark, G; Lendemer, J; Lumbsch, HT; Schmull, M; Schoch, CL; Sérusiaux, E; Maddison, DR; Arnold, AE; Lutzoni, F; Stenroos, S, A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families., Molecular phylogenetics and evolution, vol. 79 (October, 2014), pp. 132-168, ISSN 1055-7903 [doi]  [abs]
  10. Arnold, AE; Miadlikowska, J; Higgins, KL; Sarvate, SD; Gugger, P; Way, A; Hofstetter, V; Kauff, F; Lutzoni, F, A phylogenetic estimation of trophic transition networks for ascomycetous fungi: are lichens cradles of symbiotrophic fungal diversification?, Systematic biology, vol. 58 no. 3 (June, 2009), pp. 283-297 [20525584], [doi]  [abs]
  11. Gueidan, C; Villaseñor, CR; de Hoog, GS; Gorbushina, AA; Untereiner, WA; Lutzoni, F, A rock-inhabiting ancestor for mutualistic and pathogen-rich fungal lineages., Studies in mycology, vol. 61 (January, 2008), pp. 111-119, ISSN 0166-0616 [19287533], [doi]  [abs]
  12. Lutzoni, F; Pagel, M, Accelerated evolution as a consequence of transitions to mutualism., Proceedings of the National Academy of Sciences of the United States of America, vol. 94 no. 21 (October, 1997), pp. 11422-11427, ISSN 0027-8424 [11038586], [doi]  [abs]
  13. Gaya, E; Redelings, BD; Navarro-Rosinés, P; Llimona, X; De Cáceres, M; Lutzoni, F, Align or not to align? Resolving species complexes within the Caloplaca saxicola group as a case study., Mycologia, vol. 103 no. 2 (March, 2011), pp. 361-378, ISSN 0027-5514 [dtl], [doi]  [abs]
  14. Gueidan, C; Ruibal Villasenor, C; de Hoog, S; Gorbushina, A; Untereiner, WA; Lutzoni, F, An extremotolerant rock-inhabiting ancestor for mutualistic and pathogen-rich fungal lineages, Studies in Mycology, vol. 61 (2008), pp. 111-119
  15. Pardo-De la Hoz, CJ; Magain, N; Piatkowski, B; Cornet, L; Dal Forno, M; Carbone, I; Miadlikowska, J; Lutzoni, F, Ancient Rapid Radiation Explains Most Conflicts Among Gene Trees and Well-Supported Phylogenomic Trees of Nostocalean Cyanobacteria., Systematic biology, vol. 72 no. 3 (June, 2023), pp. 694-712 [doi]  [abs]
  16. Liwa, L; Miadlikowska, J; Redelings, BD; Molnar, K; Lutzoni, F, Are widespread morphospecies from the Lecanora dispersa group (lichen-forming Ascomycota) monophyletic?, Bryologist, vol. 115 no. 2 (June, 2012), pp. 265-277, American Bryological and Lichenological Society, ISSN 0007-2745 [doi]  [abs]
  17. Lutzoni, F; Kauff, F; Cox, CJ; McLaughlin, D; Celio, G; Dentinger, B; Padamsee, M; Hibbett, D; James, TY; Baloch, E; Grube, M; Reeb, V; Hofstetter, V; Schoch, C; Arnold, AE; Miadlikowska, J; Spatafora, J; Johnson, D; Hambleton, S; Crockett, M; Shoemaker, R; Sung, G-H; Lücking, R; Lumbsch, T; O'Donnell, K; Binder, M; Diederich, P; Ertz, D; Gueidan, C; Hansen, K; Harris, RC; Hosaka, K; Lim, Y-W; Matheny, B; Nishida, H; Pfister, D; Rogers, J; Rossman, A; Schmitt, I; Sipman, H; Stone, J; Sugiyama, J; Yahr, R; Vilgalys, R, Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits., American journal of botany, vol. 91 no. 10 (October, 2004), pp. 1446-1480, ISSN 0002-9122 [21652303], [doi]  [abs]
  18. O'Brien, HE; Miadlikowska, J; Lutzoni, F, Assessing host specialization in symbiotic cyanobacteria associated with four closely related species of the lichen fungus Peltigera, European Journal of Phycology, vol. 40 no. 4 (November, 2005), pp. 363-378, Informa UK Limited, ISSN 0967-0262 [doi]  [abs]
  19. O'Brien, HE; Miadlikowska, J; Lutzoni, F, Assessing population structure and host specialization in lichenized cyanobacteria., The New phytologist, vol. 198 no. 2 (April, 2013), pp. 557-566 [23406441], [doi]  [abs]
  20. O'Brien, HE; Miadlikowska, J; Lutzoni, F, Assessing reproductive isolation in highly diverse communities of the lichen-forming fungal genus peltigera., Evolution; international journal of organic evolution, vol. 63 no. 8 (August, 2009), pp. 2076-2086 [19453383], [doi]  [abs]
  21. Alfaro, ME; Zoller, S; Lutzoni, F, Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence., Molecular biology and evolution, vol. 20 no. 2 (February, 2003), pp. 255-266 [doi]  [abs]
  22. Lu, J; Magain, N; Miadlikowska, J; Coyle, JR; Truong, C; Lutzoni, F, Bioclimatic factors at an intrabiome scale are more limiting than cyanobiont availability for the lichen-forming genus Peltigera., American journal of botany, vol. 105 no. 7 (July, 2018), pp. 1198-1211 [doi]  [abs]
  23. Flakus, A; Etayo, J; Miadlikowska, J; Lutzoni, F; Kukwa, M; Matura, N; Rodriguez-Flakus, P, Biodiversity assessment of ascomycetes inhabiting Lobariella lichens in Andean cloud forests led to one new family, three new genera and 13 new species of lichenicolous fungi, Plant and Fungal Systematics, vol. 64 no. 2 (December, 2019), pp. 283-344 [doi]  [abs]
  24. Darnajoux, R; Zhang, X; McRose, DL; Miadlikowska, J; Lutzoni, F; Kraepiel, AML; Bellenger, J-P, Biological nitrogen fixation by alternative nitrogenases in boreal cyanolichens: importance of molybdenum availability and implications for current biological nitrogen fixation estimates., The New phytologist, vol. 213 no. 2 (January, 2017), pp. 680-689 [doi]  [abs]
  25. Oita, S; Ibáñez, A; Lutzoni, F; Miadlikowska, J; Geml, J; Lewis, LA; Hom, EFY; Carbone, I; U'Ren, JM; Arnold, AE, Climate and seasonality drive the richness and composition of tropical fungal endophytes at a landscape scale., Communications biology, vol. 4 no. 1 (March, 2021), pp. 313 [doi]  [abs]
  26. U'Ren, J; Lutzoni, F; Miadlikowska, J; Arnold, AE, Community analysis reveals close affinities between endophytic and endolichenic fungi in mosses and lichens, Microbial Ecology, vol. 60 no. 2 (2010), pp. 340-353, ISSN 0095-3628 [doi]  [abs]
  27. Geml, J; Arnold, AE; Semenova-Nelsen, TA; Nouhra, ER; Drechsler-Santos, ER; Góes-Neto, A; Morgado, LN; Ódor, P; Hegyi, B; Oriol, G; Ibáñez, A; Tedersoo, L; Lutzoni, F, Community dynamics of soil-borne fungal communities along elevation gradients in neotropical and palaeotropical forests., Molecular ecology, vol. 31 no. 7 (April, 2022), pp. 2044-2060 [doi]  [abs]
  28. Alfaro, ME; Zoller, S; Lutzoni, F, Comparative performance of the bootstrap and Bayesian MCMC sampling in assessing phylogenetic confidence: a simulation study, AMERICAN ZOOLOGIST, vol. 41 no. 6 (2001), pp. 1379-1379, ISSN 0003-1569 [Gateway.cgi]
  29. Chen, K-H; Liao, H-L; Arnold, AE; Korotkin, HB; Wu, SH; Matheny, PB; Lutzoni, F, Comparative transcriptomics of fungal endophytes in co-culture with their moss host Dicranum scoparium reveals fungal trophic lability and moss unchanged to slightly increased growth rates., The New phytologist, vol. 234 no. 5 (June, 2022), pp. 1832-1847 [doi]  [abs]
  30. Joneson, S; Lutzoni, F, Compatibility and thigmotropism in the lichen symbiosis: A reappraisal, Symbiosis, vol. 47 no. 2 (January, 2009), pp. 109-115, Springer Nature, ISSN 0334-5114 [doi]  [abs]
  31. Magain, N; Miadlikowska, J; Mueller, O; Gajdeczka, M; Truong, C; Salamov, AA; Dubchak, I; Grigoriev, IV; Goffinet, B; Sérusiaux, E; Lutzoni, F, Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon., Molecular phylogenetics and evolution, vol. 117 (December, 2017), pp. 10-29 [doi]  [abs]
  32. Lutzoni, F; Nowak, MD; Alfaro, ME; Reeb, V; Miadlikowska, J; Krug, M; Arnold, AE; Lewis, LA; Swofford, DL; Hibbett, D; Hilu, K; James, TY; Quandt, D; Magallón, S, Contemporaneous radiations of fungi and plants linked to symbiosis., Nature communications, vol. 9 no. 1 (December, 2018), pp. 5451 [doi]  [abs]
  33. Hoz, CJPDL; Magain, N; Lutzoni, F; Goward, T; Restrepo, S; Miadlikowska, J, Contrasting Symbiotic Patterns in Two Closely Related Lineages of Trimembered Lichens of the Genus Peltigera, Frontiers in Microbiology, vol. 9 no. NOV (November, 2018), FRONTIERS MEDIA SA [doi]  [abs]
  34. Reeb, V; Lutzoni, F; Roux, C, Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory., Molecular phylogenetics and evolution, vol. 32 no. 3 (September, 2004), pp. 1036-1060, ISSN 1055-7903 [15288074], [doi]  [abs]
  35. Medeiros, ID; Lutzoni, F, Contribution to a modern treatment of Graphidaceae biodiversity in South Africa: genera of tribe Graphideae with hyaline ascospores, Lichenologist, vol. 54 no. 5 (September, 2022), pp. 253-270 [doi]  [abs]
  36. U'Ren, JM; Miadlikowska, J; Zimmerman, NB; Lutzoni, F; Stajich, JE; Arnold, AE, Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota)., Molecular phylogenetics and evolution, vol. 98 (May, 2016), pp. 210-232 [doi]  [abs]
  37. Gazis, R; Miadlikowska, J; Lutzoni, F; Arnold, AE; Chaverri, P, Culture-based study of endophytes associated with rubber trees in Peru reveals a new class of Pezizomycotina: Xylonomycetes., Molecular phylogenetics and evolution, vol. 65 no. 1 (October, 2012), pp. 294-304, ISSN 1055-7903 [doi]  [abs]
  38. Amtoft, A; Lutzoni, F; Miadlikowska, J, Dermatocarpon (Verrucariaceae) in the Ozark Highlands, North America, Bryologist, vol. 111 no. 1 (March, 2008), pp. 1-40, American Bryological and Lichenological Society, ISSN 0007-2745 [doi]  [abs]
  39. Darnajoux, R; Lutzoni, F; Miadlikowska, J; Bellenger, J-P, Determination of elemental baseline using peltigeralean lichens from Northeastern Canada (Québec): Initial data collection for long term monitoring of the impact of global climate change on boreal and subarctic area in Canada., The Science of the total environment, vol. 533 (November, 2015), pp. 1-7, ISSN 0048-9697 [doi]  [abs]
  40. Chen, K-H; Liao, H-L; Bellenger, J-P; Lutzoni, F, Differential gene expression associated with fungal trophic shifts along the senescence gradient of the moss Dicranum scoparium., Environmental microbiology, vol. 21 no. 7 (July, 2019), pp. 2273-2289 [doi]  [abs]
  41. Otálora, MAG; Aragón, G; Molina, MC; Martínez, I; Lutzoni, F, Disentangling the Collema-Leptogium complex through a molecular phylogenetic study of the Collemataceae (Peltigerales, lichen-forming Ascomycota)., Mycologia, vol. 102 no. 2 (March, 2010), pp. 279-290, ISSN 0027-5514 [doi]  [abs]
  42. Arnold, AE; Lutzoni, F, Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots?, Ecology, vol. 88 no. 3 (March, 2007), pp. 541-549, ISSN 0012-9658 [17503580], [doi]  [abs]
  43. Arnold, AE; Henk, DA; Eells, RL; Lutzoni, F; Vilgalys, R, Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR., Mycologia, vol. 99 no. 2 (March, 2007), pp. 185-206, ISSN 0027-5514 [17682771], [doi]  [abs]
  44. Rydholm, C; Dyer, PS; Lutzoni, F, DNA sequence characterization and molecular evolution of MAT1 and MAT2 mating-type loci of the self-compatible ascomycete mold Neosartorya fischeri., Eukaryotic cell, vol. 6 no. 5 (May, 2007), pp. 868-874, ISSN 1535-9778 [17384199], [doi]  [abs]
  45. Franco, MEE; Wisecaver, JH; Arnold, AE; Ju, Y-M; Slot, JC; Ahrendt, S; Moore, LP; Eastman, KE; Scott, K; Konkel, Z; Mondo, SJ; Kuo, A; Hayes, RD; Haridas, S; Andreopoulos, B; Riley, R; LaButti, K; Pangilinan, J; Lipzen, A; Amirebrahimi, M; Yan, J; Adam, C; Keymanesh, K; Ng, V; Louie, K; Northen, T; Drula, E; Henrissat, B; Hsieh, H-M; Youens-Clark, K; Lutzoni, F; Miadlikowska, J; Eastwood, DC; Hamelin, RC; Grigoriev, IV; U'Ren, JM, Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes., The New phytologist, vol. 233 no. 3 (February, 2022), pp. 1317-1330 [doi]  [abs]
  46. U'Ren, JM; Oita, S; Lutzoni, F; Miadlikowska, J; Ball, B; Carbone, I; May, G; Zimmerman, NB; Valle, D; Trouet, V; Arnold, AE, Environmental drivers and cryptic biodiversity hotspots define endophytes in Earth's largest terrestrial biome., Current biology : CB, vol. 34 no. 5 (March, 2024), pp. 1148-1156.e7 [doi]  [abs]
  47. Chagnon, P-L; U'Ren, JM; Miadlikowska, J; Lutzoni, F; Arnold, AE, Erratum to: Interaction type influences ecological network structure more than local abiotic conditions: evidence from endophytic and endolichenic fungi at a continental scale., Oecologia, vol. 181 no. 2 (June, 2016), pp. 633, Springer Nature [doi]
  48. Lutzoni, , Erratum: (American Journal of Botany (October 2004) 91:10 (1450)), American Journal of Botany, vol. 92 no. 1 (January, 2005), pp. i, ISSN 0002-9122
  49. O'Donnell, K; Lutzoni, FM; Ward, TJ; Benny, GL, Erratum: Evolutionary relationships among mucoralean fungi (zygomycota): Evidence for family polyphyly on a large scale (Mycologia (2001) 93:2), Mycologia, vol. 93 no. 4 (January, 2002), pp. 814, ISSN 0027-5514 [doi]
  50. Geiser, DM; Gueidan Miadlikowska, J; Kauff, F; Hofstetter, V; Fraker, E; Schoch, CL; Tibell, L; Untereiner, WA; Aptroot, A; Lutzoni, F, Eurotiomycetes: Eurotiomycetidae and Chaetothyriomycetidae, Mycologia, vol. 98 no. 6 (2006), pp. 1055-1066, ISSN 0027-5514 [doi]  [abs]
  51. Geiser, DM; Gueidan, C; Miadlikowska, J; Lutzoni, F; Kauff, F; Hofstetter, V; Fraker, E; Schoch, CL; Tibell, L; Untereiner, WA; Aptroot, A, Eurotiomycetes: Eurotiomycetidae and Chaetothyriomycetidae., Mycologia, vol. 98 no. 6 (November, 2006), pp. 1053-1064, ISSN 0027-5514 [doi]  [abs]
  52. Paoletti, M; Rydholm, C; Schwier, E; Anderson, MJ; Szakacs, G; Lutzoni, F; Debeaupuis, JP; Latgé, JP; Denning, DW; Dyer, PS, Evidence for sexuality in the opportunistic fungal pathogen Aspergillus fumigatus., Current Biology, vol. 15 no. 13 (2005), pp. 1242-1248 [doi]  [abs]
  53. Reeb, V; Haugen, P; Bhattacharya, D; Lutzoni, F, Evolution of Pleopsidium (lichenized Ascomycota) S943 group I introns and the phylogeography of an intron-encoded putative homing endonuclease., Journal of molecular evolution, vol. 64 no. 3 (March, 2007), pp. 285-298, ISSN 0022-2844 [17294323], [doi]  [abs]
  54. O'Donnell, K; Lutzoni, FM; Ward, TJ; Benny, GL, Evolutionary relationships among mucoralean fungi (Zygomycota): Evidence for family polyphyly on a large scale, Mycologia, vol. 93 no. 2 (January, 2001), pp. 286-296, JSTOR, ISSN 0027-5514 [doi]  [abs]
  55. Fernández-Brime, S; Llimona, X; Molnar, K; Stenroos, S; Högnabba, F; Björk, C; Lutzoni, F; Gaya, E, Expansion of the Stictidaceae by the addition of the saxicolous lichen-forming genus Ingvariella., Mycologia, vol. 103 no. 4 (July, 2011), pp. 755-763, ISSN 0027-5514 [doi]  [abs]
  56. Cornet, L; Magain, N; Baurain, D; Lutzoni, F, Exploring syntenic conservation across genomes for phylogenetic studies of organisms subjected to horizontal gene transfers: A case study with Cyanobacteria and cyanolichens., Molecular phylogenetics and evolution, vol. 162 (September, 2021), pp. 107100 [doi]  [abs]
  57. Geml, J; Kauff, F; Brochmann, C; Lutzoni, F; Laursen, GA; Redhead, SA; Taylor, DL, Frequent circumarctic and rare transequatorial dispersals in the lichenised agaric genus Lichenomphalia (Hygrophoraceae, Basidiomycota)., Fungal biology, vol. 116 no. 3 (March, 2012), pp. 388-400, ISSN 1878-6146 [doi]  [abs]
  58. Arnold, AE; Lutzoni, F, From the leaf to the landscape: Endophyte diversity and interactions at small and large spatial scales, PHYTOPATHOLOGY, vol. 96 no. 6 (June, 2006), pp. S136-S137, AMER PHYTOPATHOLOGICAL SOC, ISSN 0031-949X [Gateway.cgi]
  59. Joneson, S; Armaleo, D; Lutzoni, F, Fungal and algal gene expression in early developmental stages of lichen-symbiosis., Mycologia, vol. 103 no. 2 (March, 2011), pp. 291-306, ISSN 0027-5514 [20943535], [doi]  [abs]
  60. Gueidan, C; Savić, S; Thüs, H; Roux, C; Keller, C; Tibell, L; Prieto, M; Heiomarsson, S; Breuss, O; Orange, A; Fröberg, L; Wynns, AA; Navarro-Rosinés, P; Krzewicka, B; Pykälä, J; Grube, M; Lutzoni, F, Generic classification of the Verrucariaceae (Ascomycota) based on molecular and morphological evidence: Recent progress and remaining challenges, Taxon, vol. 58 no. 1 (January, 2009), pp. 184-208, ISSN 0040-0262 [doi]  [abs]
  61. Zoller, S; Lutzoni, F; Scheidegger, C, Genetic variability within and among populations of the threatened foliose lichen Lobaria pulmonaria (L.), Molecular Ecology, vol. 8 (1999), pp. 2049-2060, Hoffm. in Switzerland.
  62. Oono, R; Lutzoni, F; Arnold, AE; Kaye, L; U'Ren, JM; May, G; Carbone, I, Genetic variation in horizontally transmitted fungal endophytes of pine needles reveals population structure in cryptic species., American journal of botany, vol. 101 no. 8 (August, 2014), pp. 1362-1374, ISSN 0002-9122 [doi]  [abs]
  63. Zoller, S; Lutzoni, F; Scheidegger, C, Genetic variation within and among populations of the threatened lichen Lobaria pulmonaria in Switzerland and implications for its conservation., Molecular ecology, vol. 8 no. 12 (December, 1999), pp. 2049-2059, ISSN 0962-1083 [doi]  [abs]
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  131. Zoller, S; Lutzoni, F, Slow algae, fast fungi: exceptionally high nucleotide substitution rate differences between lichenized fungi Omphalina and their symbiotic green algae Coccomyxa., Molecular phylogenetics and evolution, vol. 29 no. 3 (December, 2003), pp. 629-640, ISSN 1055-7903 [14615198], [doi]  [abs]
  132. Magain, N; Truong, C; Goward, T; Niu, D; Goffinet, B; Sérusiaux, E; Vitikainen, O; Lutzoni, F; Miadlikowska, J, Species delimitation at a global scale reveals high species richness with complex biogeography and patterns of symbiont association in peltigera section peltigera (Lichenized ascomycota: Lecanoromycetes), Taxon, vol. 67 no. 5 (October, 2018), pp. 836-870, WILEY [doi]  [abs]
  133. Chagnon, PL; Magain, N; Miadlikowska, J; Lutzoni, F, Species diversification and phylogenetically constrained symbiont switching generated high modularity in the lichen genus Peltigera, Journal of Ecology, vol. 107 no. 4 (July, 2019), pp. 1645-1661 [doi]  [abs]
  134. Miadlikowska, J; Magain, N; Pardo-De La Hoz, CJ; Niu, D; Goward, T; Sérusiaux, E; Lutzoni, F, Species in section Peltidea (aphthosa group) of the genus Peltigera remain cryptic after molecular phylogenetic revision, Plant and Fungal Systematics, vol. 63 no. 2 (December, 2018), pp. 45-64 [doi]  [abs]
  135. Korotkin, HB; Swenie, RA; Miettinen, O; Budke, JM; Chen, K-H; Lutzoni, F; Smith, ME; Matheny, PB, Stable isotope analyses reveal previously unknown trophic mode diversity in the Hymenochaetales., American journal of botany, vol. 105 no. 11 (November, 2018), pp. 1869-1887 [doi]  [abs]
  136. Chagnon, PL; Magain, N; Miadlikowska, J; Lutzoni, F, Strong specificity and network modularity at a very fine phylogenetic scale in the lichen genus Peltigera., Oecologia, vol. 187 no. 3 (July, 2018), pp. 767-782, Springer Nature [doi]  [abs]
  137. Fernández, FA; Miller, AN; Huhndorf, SM; Lutzoni, FM; Zoller, S, Systematics of the genus Chaetosphaeria and its allied genera: morphological and phylogenetic diversity in north temperate and neotropical taxa., Mycologia, vol. 98 no. 1 (January, 2006), pp. 121-130, ISSN 0027-5514 [doi]  [abs]
  138. Carbone, I; White, JB; Miadlikowska, J; Arnold, AE; Miller, MA; Magain, N; U'Ren, JM; Lutzoni, F, T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees., Microbiology resource announcements, vol. 8 no. 29 (July, 2019), pp. e00328-e00319 [doi]  [abs]
  139. Carbone, I; White, JB; Miadlikowska, J; Arnold, AE; Miller, MA; Kauff, F; U'Ren, JM; May, G; Lutzoni, F, T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life., Bioinformatics (Oxford, England), vol. 33 no. 8 (April, 2017), pp. 1160-1168 [doi]  [abs]
  140. Fernández, FA; Lutzoni, FM; Huhndorf, SM, Teleomorph-anamorph connections: The new pyrenomycetous genus Carpoligna and its Pleurothecium anamorph, Mycologia, vol. 91 no. 2 (January, 1999), pp. 251-262, JSTOR [doi]  [abs]
  141. Gaya, E; Fernández-Brime, S; Vargas, R; Lachlan, RF; Gueidan, C; Ramírez-Mejía, M; Lutzoni, F, The adaptive radiation of lichen-forming Teloschistaceae is associated with sunscreening pigments and a bark-to-rock substrate shift., Proceedings of the National Academy of Sciences of the United States of America, vol. 112 no. 37 (September, 2015), pp. 11600-11605, ISSN 0027-8424 [doi]  [abs]
  142. Schoch, CL; Sung, G-H; López-Giráldez, F; Townsend, JP; Miadlikowska, J; Hofstetter, V; Robbertse, B; Matheny, PB; Kauff, F; Wang, Z; Gueidan, C; Andrie, RM; Trippe, K; Ciufetti, LM; Wynns, A; Fraker, E; Hodkinson, BP; Bonito, G; Groenewald, JZ; Arzanlou, M; de Hoog, GS; Crous, PW; Hewitt, D; Pfister, DH; Peterson, K; Gryzenhout, M; Wingfield, MJ; Aptroot, A; Suh, S-O; Blackwell, M; Hillis, DM; Griffith, GW; Castlebury, LA; Rossman, AY; Lumbsch, HT; Lücking, R; Büdel, B; Rauhut, A; Diederich, P; Ertz, D; Geiser, DM; Hosaka, K; Inderbitzin, P; Kohlmeyer, J; Volkmann-Kohlmeyer, B; Mostert, L; O'Donnell, K; Sipman, H; Rogers, JD; Shoemaker, RA; Sugiyama, J; Summerbell, RC; Untereiner, W; Johnston, PR; Stenroos, S; Zuccaro, A; Dyer, PS; Crittenden, PD; Cole, MS; Hansen, K; Trappe, JM; Yahr, R; Lutzoni, F; Spatafora, JW, The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits., Systematic biology, vol. 58 no. 2 (April, 2009), pp. 224-239, ISSN 1063-5157 [doi]  [abs]
  143. Haugen, P; Reeb, V; Lutzoni, F; Bhattacharya, D, The evolution of homing endonuclease genes and group I introns in nuclear rDNA., Molecular biology and evolution, vol. 21 no. 1 (January, 2004), pp. 129-140 [doi]  [abs]
  144. Haugen, P; Reeb, V; Lutzoni, F; Bhattacharya, D, The evolution of homing endonuclease genes and group I introns in nuclear rDNA., Molecular Biology and Evolution, vol. 21 no. 1 (2004), pp. 105-116 [doi]  [abs]
  145. McDonald, T; Miadlikowska, J; Lutzoni, F, The lichen genus Sticta in the Great Smoky Mountains: A phylogenetic study of morphological, chemical, and molecular data, Bryologist, vol. 106 no. 1 (January, 2003), pp. 61-79, American Bryological and Lichenological Society [doi]  [abs]
  146. Armaleo, D; Müller, O; Lutzoni, F; Andrésson, ÓS; Blanc, G; Bode, HB; Collart, FR; Dal Grande, F; Dietrich, F; Grigoriev, IV; Joneson, S; Kuo, A; Larsen, PE; Logsdon, JM; Lopez, D; Martin, F; May, SP; McDonald, TR; Merchant, SS; Miao, V; Morin, E; Oono, R; Pellegrini, M; Rubinstein, N; Sanchez-Puerta, MV; Savelkoul, E; Schmitt, I; Slot, JC; Soanes, D; Szövényi, P; Talbot, NJ; Veneault-Fourrey, C; Xavier, BB, The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata., BMC Genomics, vol. 20 no. 1 (July, 2019), pp. 605 [doi]  [abs]
  147. McLaughlin, DJ; Hibbett, DS; Lutzoni, F; Spatafora, JW; Vilgalys, R, The search for the fungal tree of life., Trends in microbiology, vol. 17 no. 11 (November, 2009), pp. 488-497, ISSN 0966-842X [doi]  [abs]
  148. Barker, FK; Lutzoni, FM, The utility of the incongruence length difference test., Systematic biology, vol. 51 no. 4 (August, 2002), pp. 625-637 [doi]
  149. Ertz, D; Miadlikowska, J; Lutzoni, F; Dessein, S; Raspé, O; Vigneron, N; Hofstetter, V; Diederich, P, Towards a new classification of the Arthoniales (Ascomycota) based on a three-gene phylogeny focussing on the genus Opegrapha., Mycological research., vol. 113 no. Pt 1 (January, 2009), pp. 141-152, ISSN 0953-7562 [doi]  [abs]
  150. Miadlikowska, J; Magain, N; Medeiros, ID; Pardo-De La Hoz, CJ; Carbone, I; Lagreca, S; Barlow, T; Myllys, L; Schmull, M; Lutzoni, F, Towards a nomenclatural clarification of the Peltigera ponojensis/monticola clade including metagenomic sequencing of type material and the introduction of P. globulata Miadl. & Magain sp. nov., Lichenologist, vol. 55 no. 5 (September, 2023), pp. 315-324 [doi]  [abs]
  151. Green, MS; Ball, B; Lutzoni, F; Zi-Min, H; Lopez-Bautista, JM, TRENTEPOHLIALES (ULVOPHYCEAE, CHLOROPHYTA) FROM COASTAL SOUTH CAROLINA, JOURNAL OF PHYCOLOGY, vol. 48 (2012), pp. S15-S15, ISSN 0022-3646 [Gateway.cgi]
  152. Medeiros, ID; Mazur, E; Miadlikowska, J; Flakus, A; Rodriguez-Flakus, P; Pardo-De la Hoz, CJ; Cieślak, E; Śliwa, L; Lutzoni, F, Turnover of Lecanoroid Mycobionts and Their Trebouxia Photobionts Along an Elevation Gradient in Bolivia Highlights the Role of Environment in Structuring the Lichen Symbiosis., Frontiers in microbiology, vol. 12 (January, 2021), pp. 774839 [doi]  [abs]
  153. McDonald, TR; Gaya, E; Lutzoni, F, Twenty-five aposymbiotic cultures of lichenizing fungi available for experimental studies on symbiotic systems, Symbiosis, vol. 59 no. 3 (2013), pp. 165-171, Springer Nature, ISSN 0334-5114 [doi]  [abs]
  154. Gueidan, C; Roux, C; Lutzoni, F, Using a multigene analysis to assess generic delineation and character evolution in the Verrucariaceae (Verrucariales, Ascomycota)., Mycological Research, vol. 110 (2007), pp. 1147-1170
  155. Gueidan, C; Roux, C; Lutzoni, F, Using a multigene phylogenetic analysis to assess generic delineation and character evolution in Verrucariaceae (Verrucariales, Ascomycota)., Mycological research., vol. 111 no. Pt 10 (October, 2007), pp. 1145-1168, ISSN 0953-7562 [17981450], [doi]  [abs]
  156. Kauff, F; Cox, CJ; Lutzoni, F, WASABI: an automated sequence processing system for multigene phylogenies., Systematic biology, vol. 56 no. 3 (June, 2007), pp. 523-531, ISSN 1063-5157 [17562476], [doi]
  157. Bhattacharya, D; Lutzoni, F; Reeb, V; Simon, D; Nason, J; Fernandez, F, Widespread occurrence of spliceosomal introns in the rDNA genes of ascomycetes., Molecular biology and evolution, vol. 17 no. 12 (December, 2000), pp. 1971-1984, ISSN 0737-4038 [doi]  [abs]
  158. van Nieuwenhuijzen, EJ; Miadlikowska, JM; Houbraken, JAMP; Adan, OCG; Lutzoni, FM; Samson, RA, Wood staining fungi revealed taxonomic novelties in Pezizomycotina: New order Superstratomycetales and new species Cyanodermella oleoligni., Studies in mycology, vol. 85 (September, 2016), pp. 107-124 [doi]  [abs]

Papers Submitted

  1. Oono, R., Lutzoni, F., Arnold, A. E., Kaye, L., U’ren, J. M., May, G., Carbone, I., Genetic variation in horizontally transmitted symbionts of pine needles reveals population structure in cryptic species, American Naturalist (2014)
  2. Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., Gaya, E., Hafellner, J., Hofstetter, V., Gueidan, C., Kukwa, M., Lücking, M., Björk, C., Sipman, H. J. M., Burgaz, A. R., Thell, A., Passo, A., Myllys, L., Goward, T., Fernández-Brime, S., Hestmark, G., Lendemer, J., Lumbsch, H. T., Schmull, M., Schoch, C., Sérusiaux, E., Maddison, D. R., Arnold, A. E., Stenroos, S. and Lutzoni, F., Multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 312 genera and 66 families, Molecular Phylogenetics and Evolution (2014)

Book Chapters

  1. Lutzoni, F; Vilgalys, R, Integration of morphological and molecular data sets in estimating fungal phytogenies, Canadian Journal of Botany, vol. 73 no. S1 (December, 1995), pp. 649-659, Canadian Science Publishing, ISSN 0008-4026 [Gateway.cgi], [doi]  [abs]
  2. Magain, N; Miadlikowska, J; Goffinet, B; Sérusiaux, E; Lutzoni, F, Macroevolution of Specificity in Cyanolichens of the Genus Peltigera Section Polydactylon (Lecanoromycetes, Ascomycota)., Systematic biology, vol. 66 no. 1 (January, 2017), pp. 74-99 [doi]  [abs]

Book Reviews

  1. Lutzoni, F. [Review] Stefan Ekman in Opera Botanica 127, 148 pp., 1996., The corticolous and lignicolous species of Bacidia and Bacidina in North America, The Bryologist, vol. 102 (1999), pp. 165-166
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