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Publications of Anne D. Yoder    :chronological  alphabetical  combined  bibtex listing:

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Papers Published

  1. Tiley, GP; Crowl, AA; Almary, TOM; Luke, WRQ; Solofondranohatra, CL; Besnard, G; Lehmann, CER; Yoder, AD; Vorontsova, MS, Genetic variation in Loudetia simplex supports the presence of ancient grasslands in Madagascar, Plants People Planet, vol. 6 no. 2 (March, 2024), pp. 315-329 [doi]  [abs]
  2. Paietta, EN; Kraberger, S; Regney, M; Custer, JM; Ehmke, E; Yoder, AD; Varsani, A, Interspecies Papillomavirus Type Infection and a Novel Papillomavirus Type in Red Ruffed Lemurs (Varecia rubra)., Viruses, vol. 16 no. 1 (December, 2023), pp. 37 [doi]  [abs]
  3. Tiley, GP; Flouri, T; Jiao, X; Poelstra, JW; Xu, B; Zhu, T; Rannala, B; Yoder, AD; Yang, Z, Estimation of species divergence times in presence of cross-species gene flow., Systematic biology, vol. 72 no. 4 (August, 2023), pp. 820-836 [doi]  [abs]
  4. Paietta, EN; Kraberger, S; Custer, JM; Vargas, KL; Espy, C; Ehmke, E; Yoder, AD; Varsani, A, Characterization of Diverse Anelloviruses, Cressdnaviruses, and Bacteriophages in the Human Oral DNA Virome from North Carolina (USA)., Viruses, vol. 15 no. 9 (August, 2023), pp. 1821 [doi]  [abs]
  5. van Elst, T; Schüßler, D; Rakotondravony, R; Rovanirina, VST; Veillet, A; Hohenlohe, PA; Ratsimbazafy, JH; Rasoloarison, RM; Rasoloharijaona, S; Randrianambinina, B; Ramilison, ML; Yoder, AD; Louis, EE; Radespiel, U, Diversification processes in Gerp's mouse lemur demonstrate the importance of rivers and altitude as biogeographic barriers in Madagascar's humid rainforests., Ecology and evolution, vol. 13 no. 7 (July, 2023), pp. e10254 [doi]  [abs]
  6. Shao, Y; Zhou, L; Li, F; Zhao, L; Zhang, B-L; Shao, F; Chen, J-W; Chen, C-Y; Bi, X; Zhuang, X-L; Zhu, H-L; Hu, J; Sun, Z; Li, X; Wang, D; Rivas-González, I; Wang, S; Wang, Y-M; Chen, W; Li, G; Lu, H-M; Liu, Y; Kuderna, LFK; Farh, KK-H; Fan, P-F; Yu, L; Li, M; Liu, Z-J; Tiley, GP; Yoder, AD; Roos, C; Hayakawa, T; Marques-Bonet, T; Rogers, J; Stenson, PD; Cooper, DN; Schierup, MH; Yao, Y-G; Zhang, Y-P; Wang, W; Qi, X-G; Zhang, G; Wu, D-D, Phylogenomic analyses provide insights into primate evolution., Science (New York, N.Y.), vol. 380 no. 6648 (June, 2023), pp. 913-924 [doi]  [abs]
  7. Paietta, EN; Kraberger, S; Custer, JM; Vargas, KL; Van Doorslaer, K; Yoder, AD; Varsani, A, Identification of diverse papillomaviruses in captive black-and-white ruffed lemurs (Varecia variegata)., Archives of virology, vol. 168 no. 1 (December, 2022), pp. 13 [doi]  [abs]
  8. Teixeira, H; van Elst, T; Ramsay, MS; Rakotondravony, R; Salmona, J; Yoder, AD; Radespiel, U, Retraction: Teixeira et al. RADseq Data Suggest Occasional Hybridization between Microcebus murinus and M. ravelobensis in Northwestern Madagascar. Genes 2022, 13, 913., Genes, vol. 13 no. 11 (November, 2022), pp. 2146 [doi]  [abs]
  9. Tiley, GP; van Elst, T; Teixeira, H; Schüßler, D; Salmona, J; Blanco, MB; Ralison, JM; Randrianambinina, B; Rasoloarison, RM; Stahlke, AR; Hohenlohe, PA; Chikhi, L; Louis, EE; Radespiel, U; Yoder, AD, Population genomic structure in Goodman's mouse lemur reveals long-standing separation of Madagascar's Central Highlands and eastern rainforests., Molecular ecology, vol. 31 no. 19 (October, 2022), pp. 4901-4918 [doi]  [abs]
  10. Greene, LK; Andriambeloson, J-B; Rasoanaivo, HA; Yoder, AD; Blanco, MB, Variation in gut microbiome structure across the annual hibernation cycle in a wild primate., FEMS microbiology ecology, vol. 98 no. 7 (July, 2022), pp. fiac070 [doi]  [abs]
  11. Teixeira, H; van Elst, T; Ramsay, MS; Rakotondravony, R; Salmona, J; Yoder, AD; Radespiel, U, RADseq Data Suggest Occasional Hybridization between Microcebus murinus and M. ravelobensis in Northwestern Madagascar., Genes, vol. 13 no. 5 (May, 2022), pp. 913 [doi]  [abs]
  12. Blanco, MB; Greene, LK; Klopfer, PH; Lynch, D; Browning, J; Ehmke, EE; Yoder, AD, Body Mass and Tail Girth Predict Hibernation Expression in Captive Dwarf Lemurs., Physiological and biochemical zoology : PBZ, vol. 95 no. 2 (March, 2022), pp. 122-129 [doi]  [abs]
  13. Wu, D-D; Qi, X-G; Yu, L; Li, M; Liu, Z-J; Yoder, AD; Roos, C; Hayakawa, T; Rogers, J; Marques-Bonet, T; Su, B; Yao, Y-G; Zhang, Y-P; Zhang, G, Initiation of the Primate Genome Project., Zoological research, vol. 43 no. 2 (March, 2022), pp. 147-149 [doi]
  14. Lewin, HA; Richards, S; Lieberman Aiden, E; Allende, ML; Archibald, JM; Bálint, M; Barker, KB; Baumgartner, B; Belov, K; Bertorelle, G; Blaxter, ML; Cai, J; Caperello, ND; Carlson, K; Castilla-Rubio, JC; Chaw, S-M; Chen, L; Childers, AK; Coddington, JA; Conde, DA; Corominas, M; Crandall, KA; Crawford, AJ; DiPalma, F; Durbin, R; Ebenezer, TE; Edwards, SV; Fedrigo, O; Flicek, P; Formenti, G; Gibbs, RA; Gilbert, MTP; Goldstein, MM; Graves, JM; Greely, HT; Grigoriev, IV; Hackett, KJ; Hall, N; Haussler, D; Helgen, KM; Hogg, CJ; Isobe, S; Jakobsen, KS; Janke, A; Jarvis, ED; Johnson, WE; Jones, SJM; Karlsson, EK; Kersey, PJ; Kim, J-H; Kress, WJ; Kuraku, S; Lawniczak, MKN; Leebens-Mack, JH; Li, X; Lindblad-Toh, K; Liu, X; Lopez, JV; Marques-Bonet, T; Mazard, S; Mazet, JAK; Mazzoni, CJ; Myers, EW; O'Neill, RJ; Paez, S; Park, H; Robinson, GE; Roquet, C; Ryder, OA; Sabir, JSM; Shaffer, HB; Shank, TM; Sherkow, JS; Soltis, PS; Tang, B; Tedersoo, L; Uliano-Silva, M; Wang, K; Wei, X; Wetzer, R; Wilson, JL; Xu, X; Yang, H; Yoder, AD; Zhang, G, The Earth BioGenome Project 2020: Starting the clock., Proc Natl Acad Sci U S A, vol. 119 no. 4 (January, 2022), pp. e2115635118 [doi]
  15. Bergeron, LA; Besenbacher, S; Turner, T; Versoza, CJ; Wang, RJ; Price, AL; Armstrong, E; Riera, M; Carlson, J; Chen, H-Y; Hahn, MW; Harris, K; Kleppe, AS; López-Nandam, EH; Moorjani, P; Pfeifer, SP; Tiley, GP; Yoder, AD; Zhang, G; Schierup, MH, The Mutationathon highlights the importance of reaching standardization in estimates of pedigree-based germline mutation rates., eLife, vol. 11 (January, 2022), pp. e73577 [doi]  [abs]
  16. Greene, LK; Rambeloson, E; Rasoanaivo, HA; Foss, ED; Yoder, AD; Drea, CM; Blanco, MB, Gut Microbial Diversity and Ecological Specialization in Four Sympatric Lemur Species Under Lean Conditions, International Journal of Primatology, vol. 42 no. 6 (December, 2021), pp. 961-979 [doi]  [abs]
  17. Yoder, AD; Tiley, GP, The challenge and promise of estimating the de novo mutation rate from whole-genome comparisons among closely related individuals., Molecular ecology, vol. 30 no. 23 (December, 2021), pp. 6087-6100 [doi]  [abs]
  18. Andriambeloson, J-B; Blanco, MB; Andriantsalohimisantatra, A; Rivoharison, TV; Walker, N; Birkinshaw, C; Yoder, AD, Living in tiny fragments: a glimpse at the ecology of Goodman's mouse lemurs (Microcebus lehilahytsara) in the relic forest of Ankafobe, Central Highlands, Madagascar., Primates; journal of primatology, vol. 62 no. 6 (November, 2021), pp. 887-896 [doi]  [abs]
  19. Guevara, EE; Greene, LK; Blanco, MB; Farmer, C; Ranaivonasy, J; Ratsirarson, J; Mahefarisoa, KL; Rajaonarivelo, T; Rakotondrainibe, HH; Junge, RE; Williams, CV; Rambeloson, E; Rasoanaivo, HA; Rahalinarivo, V; Andrianandrianina, LH; Clayton, JB; Rothman, RS; Lawler, RR; Bradley, BJ; Yoder, AD, Molecular Adaptation to Folivory and the Conservation Implications for Madagascar’s Lemurs, Frontiers in Ecology and Evolution, vol. 9 (October, 2021) [doi]  [abs]
  20. Akkose, U; Kaya, VO; Lindsey-Boltz, L; Karagoz, Z; Brown, AD; Larsen, PA; Yoder, AD; Sancar, A; Adebali, O, Comparative analyses of two primate species diverged by more than 60 million years show different rates but similar distribution of genome-wide UV repair events., BMC genomics, vol. 22 no. 1 (August, 2021), pp. 600 [doi]  [abs]
  21. Campbell, CR; Tiley, GP; Poelstra, JW; Hunnicutt, KE; Larsen, PA; Lee, H-J; Thorne, JL; Dos Reis, M; Yoder, AD, Pedigree-based and phylogenetic methods support surprising patterns of mutation rate and spectrum in the gray mouse lemur., Heredity, vol. 127 no. 2 (August, 2021), pp. 233-244 [doi]  [abs]
  22. Marciniak, S; Mughal, MR; Godfrey, LR; Bankoff, RJ; Randrianatoandro, H; Crowley, BE; Bergey, CM; Muldoon, KM; Randrianasy, J; Raharivololona, BM; Schuster, SC; Malhi, RS; Yoder, AD; Louis, EE; Kistler, L; Perry, GH, Evolutionary and phylogenetic insights from a nuclear genome sequence of the extinct, giant, "subfossil" koala lemur Megaladapis edwardsi., Proceedings of the National Academy of Sciences of the United States of America, vol. 118 no. 26 (June, 2021), pp. e2022117118 [doi]  [abs]
  23. Guevara, EE; Webster, TH; Lawler, RR; Bradley, BJ; Greene, LK; Ranaivonasy, J; Ratsirarson, J; Harris, RA; Liu, Y; Murali, S; Raveendran, M; Hughes, DST; Muzny, DM; Yoder, AD; Worley, KC; Rogers, J, Comparative genomic analysis of sifakas (Propithecus) reveals selection for folivory and high heterozygosity despite endangered status., Science advances, vol. 7 no. 17 (April, 2021), pp. eabd2274 [doi]  [abs]
  24. Poelstra, JW; Salmona, J; Tiley, GP; Schüßler, D; Blanco, MB; Andriambeloson, JB; Bouchez, O; Campbell, CR; Etter, PD; Hohenlohe, PA; Hunnicutt, KE; Iribar, A; Johnson, EA; Kappeler, PM; Larsen, PA; Manzi, S; Ralison, JM; Randrianambinina, B; Rasoloarison, RM; Rasolofoson, DW; Stahlke, AR; Weisrock, DW; Williams, RC; Chikhi, L; Louis, EE; Radespiel, U; Yoder, AD, Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent., Systematic biology, vol. 70 no. 2 (February, 2021), pp. 203-218 [doi]  [abs]
  25. Poelstra, J; Montero, K; Lüdemann, J; Yang, Z; Rakotondranary, J; Hohenlohe, P; Stetter, N; Ganzhorn, J; Yoder, A, RADseq data reveal a lack of admixture in a mouse lemur contact zone contrary to previous microsatellite results, in bioRxiv, vol. 289 no. 1980 (2021), pp. 20220596 [doi]  [abs]
  26. Yoder, A; Tiley, G, Are pedigree-based mutation rates the Rosetta Stone of molecular ecology? Promises and pitfalls of whole genome comparisons among closely related individuals., in Authorea Preprints (2021) [doi]
  27. Tiley, GP; Poelstra, JW; Dos Reis, M; Yang, Z; Yoder, AD, Molecular Clocks without Rocks: New Solutions for Old Problems., Trends in genetics : TIG, vol. 36 no. 11 (November, 2020), pp. 845-856 [doi]  [abs]
  28. Blanco, MB; Greene, LK; Rasambainarivo, F; Toomey, E; Williams, RC; Andrianandrasana, L; Larsen, PA; Yoder, AD, Next-generation technologies applied to age-old challenges in Madagascar, Conservation Genetics, vol. 21 no. 5 (October, 2020), pp. 785-793 [doi]  [abs]
  29. Schüßler, D; Blanco, MB; Salmona, J; Poelstra, J; Andriambeloson, JB; Miller, A; Randrianambinina, B; Rasolofoson, DW; Mantilla-Contreras, J; Chikhi, L; Louis, EE; Yoder, AD; Radespiel, U, Ecology and morphology of mouse lemurs (Microcebus spp.) in a hotspot of microendemism in northeastern Madagascar, with the description of a new species., American journal of primatology, vol. 82 no. 9 (September, 2020), pp. e23180 [doi]  [abs]
  30. Kim, A; Rosenberg, NA; Degnan, JH, Probabilities of Unranked and Ranked Anomaly Zones under Birth-Death Models., Molecular biology and evolution, vol. 37 no. 5 (May, 2020), pp. 1480-1494 [doi]  [abs]
  31. Guevara, EE; Webster, TH; Lawler, RR; Bradley, BJ; Ranaivonasy, J; Ratsirarson, J; Harris, RA; Liu, Y; Murali, SC; Raveendran, M; Hughes, DST; Muzny, DM; Yoder, AD; Worley, KC; Rogers, J, Pervasive genomic evidence for adaptation to a leaf-based diet in sifakas (genus Propithecus), AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, vol. 171 (March, 2020), pp. 109-109, WILEY
  32. Williams, RC; Blanco, MB; Poelstra, JW; Hunnicutt, KE; Comeault, AA; Yoder, AD, Conservation genomic analysis reveals ancient introgression and declining levels of genetic diversity in Madagascar's hibernating dwarf lemurs., Heredity, vol. 124 no. 1 (January, 2020), pp. 236-251 [doi]  [abs]
  33. Hunnicutt, KE; Tiley, GP; Williams, RC; Larsen, PA; Blanco, MB; Rasoloarison, RM; Campbell, CR; Zhu, K; Weisrock, DW; Matsunami, H; Yoder, AD, Comparative Genomic Analysis of the Pheromone Receptor Class 1 Family (V1R) Reveals Extreme Complexity in Mouse Lemurs (Genus, Microcebus) and a Chromosomal Hotspot across Mammals., Genome Biol Evol, vol. 12 no. 1 (January, 2020), pp. 3562-3579 [doi]  [abs]
  34. Yoder, AD, Genomic Data Reveal Surprising Patterns of Lineage Diversification in Madagascar's Mouse Lemurs (Genus, Microcebus), FOLIA PRIMATOLOGICA, vol. 91 no. 3 (2020), pp. 243-244
  35. Akkose, U; Kaya, VO; Lindsey-Boltz, L; Karagoz, Z; Brown, A; Larsen, P; Yoder, A; Sancar, A; Adebali, O, Comparative analyses of two primate species diverged by more than 60 million years show different rates but similar distribution of genome-wide UV repair events, in bioRxiv (2020) [doi]
  36. Greene, LK; Bornbusch, SL; McKenney, EA; Harris, RL; Gorvetzian, SR; Yoder, AD; Drea, CM, The importance of scale in comparative microbiome research: New insights from the gut and glands of captive and wild lemurs., American journal of primatology, vol. 81 no. 10-11 (October, 2019), pp. e22974 [doi]  [abs]
  37. Li, G; Figueiró, HV; Eizirik, E; Murphy, WJ, Recombination-Aware Phylogenomics Reveals the Structured Genomic Landscape of Hybridizing Cat Species., Molecular biology and evolution, vol. 36 no. 10 (October, 2019), pp. 2111-2126 [doi]  [abs]
  38. Nouls, JC; Virgincar, RS; Culbert, AG; Morand, N; Bobbert, DW; Yoder, AD; Schopler, RS; Bashir, MR; Badea, A; Hochgeschwender, U; Driehuys, B, Applications of 3D printing in small animal magnetic resonance imaging., J Med Imaging (Bellingham), vol. 6 no. 2 (April, 2019), pp. 021605 [doi]  [abs]
  39. Campbell, CR; Poelstra, JW; Yoder, AD, What is Speciation Genomics? The roles of ecology, gene flow, and genomic architecture in the formation of species, Biological Journal of the Linnean Society, vol. 124 no. 4 (August, 2018), pp. 561-583, Oxford University Press (OUP) [doi]  [abs]
  40. Blanco, MB; Dausmann, KH; Faherty, SL; Yoder, AD, Tropical heterothermy is "cool": The expression of daily torpor and hibernation in primates., Evolutionary anthropology, vol. 27 no. 4 (July, 2018), pp. 147-161 [doi]  [abs]
  41. Reis, MD; Gunnell, GF; Barba-Montoya, J; Wilkins, A; Yang, Z; Yoder, AD, Using Phylogenomic Data to Explore the Effects of Relaxed Clocks and Calibration Strategies on Divergence Time Estimation: Primates as a Test Case., Systematic biology, vol. 67 no. 4 (July, 2018), pp. 594-615 [doi]  [abs]
  42. McKenney, EA; Maslanka, M; Rodrigo, A; Yoder, AD, Bamboo Specialists from Two Mammalian Orders (Primates, Carnivora) Share a High Number of Low-Abundance Gut Microbes., Microbial ecology, vol. 76 no. 1 (July, 2018), pp. 272-284 [doi]  [abs]
  43. Yoder, AD; Poelstra, JW; Tiley, GP; Williams, RC, Neutral Theory Is the Foundation of Conservation Genetics., Molecular biology and evolution, vol. 35 no. 6 (June, 2018), pp. 1322-1326 [doi]  [abs]
  44. McKenney, EA; Koelle, K; Dunn, RR; Yoder, AD, The ecosystem services of animal microbiomes., Molecular ecology, vol. 27 no. 8 (April, 2018), pp. 2164-2172 [doi]  [abs]
  45. Guevara, EE; Webster, TH; Ranaivonasy, J; Ratsirarson, J; Lawler, RR; Bradley, BJ; Harris, RA; Liu, Y; Murali, SC; Raveendran, M; St Hughes, D; Muzny, DM; Yoder, AD; Worley, KC; Rogers, J, Evolutionary genomics of Verreaux's sifaka (Propithecus verreauxi), AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, vol. 165 (April, 2018), pp. 108-109, WILEY
  46. Larsen, PA; Hunnicutt, KE; Larsen, RJ; Yoder, AD; Saunders, AM, Warning SINEs: Alu elements, evolution of the human brain, and the spectrum of neurological disease., Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, vol. 26 no. 1-2 (March, 2018), pp. 93-111 [doi]  [abs]
  47. Faherty, SL; Villanueva-Cañas, JL; Blanco, MB; Albà, MM; Yoder, AD, Transcriptomics in the wild: Hibernation physiology in free-ranging dwarf lemurs., Molecular ecology, vol. 27 no. 3 (February, 2018), pp. 709-722 [doi]  [abs]
  48. McKenney, EA; O'Connell, TM; Rodrigo, A; Yoder, AD, Feeding strategy shapes gut metagenomic enrichment and functional specialization in captive lemurs., Gut microbes, vol. 9 no. 3 (January, 2018), pp. 202-217 [doi]  [abs]
  49. Larsen, PA; Harris, RA; Liu, Y; Murali, SC; Campbell, CR; Brown, AD; Sullivan, BA; Shelton, J; Brown, SJ; Raveendran, M; Dudchenko, O; Machol, I; Durand, NC; Shamim, MS; Aiden, EL; Muzny, DM; Gibbs, RA; Yoder, AD; Rogers, J; Worley, KC, Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus)., BMC Biol, vol. 15 no. 1 (November, 2017), pp. 110 [doi]  [abs]
  50. Larsen, PA; Lutz, MW; Hunnicutt, KE; Mihovilovic, M; Saunders, AM; Yoder, AD; Roses, AD, The Alu neurodegeneration hypothesis: A primate-specific mechanism for neuronal transcription noise, mitochondrial dysfunction, and manifestation of neurodegenerative disease., Alzheimers Dement, vol. 13 no. 7 (July, 2017), pp. 828-838 [doi]  [abs]
  51. Faherty, SL; Campbell, CR; Hilbig, SA; Yoder, AD, The effect of body mass and diet composition on torpor patterns in a Malagasy primate (Microcebus murinus)., Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology, vol. 187 no. 4 (May, 2017), pp. 677-688 [doi]  [abs]
  52. McCluskey, K; Boundy-Mills, K; Dye, G; Ehmke, E; Gunnell, GF; Kiaris, H; Polihronakis Richmond, M; Yoder, AD; Zeigler, DR; Zehr, S; Grotewold, E, The challenges faced by living stock collections in the USA., eLife, vol. 6 (March, 2017), pp. e24611 [doi]  [abs]
  53. McKenney, EA; Greene, LK; Drea, CM; Yoder, AD, Down for the count: Cryptosporidium infection depletes the gut microbiome in Coquerel's sifakas., Microbial ecology in health and disease, vol. 28 no. 1 (January, 2017), pp. 1335165 [doi]  [abs]
  54. Nunziata, SO; Wallenhorst, P; Barrett, MA; Junge, RE; Yoder, AD; Weisrock, DW, Population and Conservation Genetics in an Endangered Lemur, Indri indri, Across Three Forest Reserves in Madagascar, International Journal of Primatology, vol. 37 no. 6 (December, 2016), pp. 688-702, Springer Nature [doi]  [abs]
  55. Blanco, MB; Dausmann, KH; Faherty, SL; Klopfer, P; Krystal, AD; Schopler, R; Yoder, AD, Hibernation in a primate: does sleep occur?, R Soc Open Sci, vol. 3 no. 8 (August, 2016), pp. 160282 [doi]  [abs]
  56. Faherty, SL; Villanueva-Cañas, JL; Klopfer, PH; Albà, MM; Yoder, AD, Gene Expression Profiling in the Hibernating Primate, Cheirogaleus Medius., Genome biology and evolution, vol. 8 no. 8 (August, 2016), pp. 2413-2426 [doi]  [abs]
  57. Yoder, AD; Campbell, CR; Blanco, MB; Dos Reis, M; Ganzhorn, JU; Goodman, SM; Hunnicutt, KE; Larsen, PA; Kappeler, PM; Rasoloarison, RM; Ralison, JM; Swofford, DL; Weisrock, DW, Geogenetic patterns in mouse lemurs (genus Microcebus) reveal the ghosts of Madagascar's forests past., in IN THE LIGHT OF EVOLUTION, VOL X: COMPARATIVE PHYLOGEOGRAPHY, Proceedings of the National Academy of Sciences of the United States of America, vol. 113 no. 29 (July, 2016), pp. 8049-8056 [doi]  [abs]
  58. Hotaling, S; Foley, ME; Lawrence, NM; Bocanegra, J; Blanco, MB; Rasoloarison, R; Kappeler, PM; Barrett, MA; Yoder, AD; Weisrock, DW, Species discovery and validation in a cryptic radiation of endangered primates: coalescent-based species delimitation in Madagascar's mouse lemurs., Molecular ecology, vol. 25 no. 9 (May, 2016), pp. 2029-2045, ISSN 0962-1083 [doi]  [abs]
  59. Federman, S; Dornburg, A; Daly, DC; Downie, A; Perry, GH; Yoder, AD; Sargis, EJ; Richard, AF; Donoghue, MJ; Baden, AL, Implications of lemuriform extinctions for the Malagasy flora., Proceedings of the National Academy of Sciences of the United States of America, vol. 113 no. 18 (May, 2016), pp. 5041-5046, ISSN 0027-8424 [doi]  [abs]
  60. Larsen, PA; Hayes, CE; Williams, CV; Junge, RE; Razafindramanana, J; Mass, V; Rakotondrainibe, H; Yoder, AD, Blood transcriptomes reveal novel parasitic zoonoses circulating in Madagascar's lemurs., Biology letters, vol. 12 no. 1 (January, 2016), pp. 20150829, ISSN 1744-9561 [doi]  [abs]
  61. Pabijan, M; Brown, JL; Chan, LM; Rakotondravony, HA; Raselimanana, AP; Yoder, AD; Glaw, F; Vences, M, Phylogeography of the arid-adapted Malagasy bullfrog, Laliostoma labrosum, influenced by past connectivity and habitat stability., Molecular phylogenetics and evolution, vol. 92 (November, 2015), pp. 11-24, ISSN 1055-7903 [doi]  [abs]
  62. Copenhaver, GP; Barsh, GS, A Decad(e) of Reasons to Contribute to a PLOS Community-Run Journal, PLOS Genetics, vol. 11 no. 10 (October, 2015), pp. e1005557-e1005557, Public Library of Science (PLoS) [repository], [doi]
  63. Blair, C; Campbell, CR; Yoder, AD, Assessing the utility of whole genome amplified DNA for next-generation molecular ecology., Molecular ecology resources, vol. 15 no. 5 (September, 2015), pp. 1079-1090, ISSN 1755-098X [doi]  [abs]
  64. Faherty, SL; Campbell, CR; Larsen, PL; Yoder, AD, Evaluating whole transcriptome amplification for gene profiling experiments using RNA-Seq, BMC Biotechnology, vol. 15 (July, 2015), pp. 65, BioMed Central [doi]  [abs]
  65. Perry, G; Kistler, L; Godfrey, LR; Crowley, BE; Muldoon, KM; Malhi, R; Schuster, S; Miller, W; Yoder, AD; Louis, EE, Nuclear genome sequences from the extinct subfossil lemurs Palaeopropithecus ingens and Megaladapis edwardsi, AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, vol. 156 (March, 2015), pp. 251-251, WILEY-BLACKWELL, ISSN 0002-9483 [Gateway.cgi]
  66. Brown, JL; Yoder, AD, Shifting ranges and conservation challenges for lemurs in the face of climate change, Ecology and Evolution, vol. 5 no. 6 (March, 2015), pp. 1131-1142 [doi]  [abs]
  67. Blair, C; Noonan, BP; Brown, JL; Raselimanana, AP; Vences, M; Yoder, AD, Multilocus phylogenetic and geospatial analyses illuminate diversification patterns and the biogeographic history of Malagasy endemic plated lizards (Gerrhosauridae: Zonosaurinae)., Journal of evolutionary biology, vol. 28 no. 2 (February, 2015), pp. 481-492, ISSN 1010-061X [doi]  [abs]
  68. Kistler, L; Ratan, A; Godfrey, LR; Crowley, BE; Hughes, CE; Lei, R; Cui, Y; Wood, ML; Muldoon, KM; Andriamialison, H; McGraw, JJ; Tomsho, LP; Schuster, SC; Miller, W; Louis, EE; Yoder, AD; Malhi, RS; Perry, GH, Comparative and population mitogenomic analyses of Madagascar's extinct, giant 'subfossil' lemurs., Journal of human evolution, vol. 79 (February, 2015), pp. 45-54, Elsevier BV, ISSN 0047-2484 [doi]  [abs]
  69. McKenney, EA; Rodrigo, A; Yoder, AD, Patterns of gut bacterial colonization in three primate species., PloS one, vol. 10 no. 5 (January, 2015), pp. e0124618 [doi]  [abs]
  70. McKenney, EA; Williamson, L; Yoder, AD; Rawls, JF; Bilbo, SD; Parker, W, Alteration of the rat cecal microbiome during colonization with the helminth Hymenolepis diminuta., Gut Microbes, vol. 6 no. 3 (2015), pp. 182-193, ISSN 1949-0976 [doi]  [abs]
  71. Brown, JL; Yoder, AD, Shifting ranges and conservation challenges for lemurs in the face of climate change, Ecology and Evolution, vol. 5 no. 6 (2015), pp. n/a-n/a, ISSN 2045-7758 [1418], [doi]  [abs]
  72. Shi, JJ; Chan, LM; Peel, AJ; Lai, R; Yoder, AD; Goodman, SM, A deep divergence time between sister species of eidolon (Pteropodidae) with evidence for widespread Panmixia, Acta Chiropterologica, vol. 16 no. 2 (December, 2014), pp. 279-292, Museum and Institute of Zoology at the Polish Academy of Sciences, ISSN 1508-1109 [doi]  [abs]
  73. Larsen, PA; Hayes, CE; Wilkins, MA; Gomard, Y; Sookhareea, R; Yoder, AD; Goodman, SM, Population genetics of the Mauritian flying fox, Pteropus Niger, Acta Chiropterologica, vol. 16 no. 2 (December, 2014), pp. 293-300, Museum and Institute of Zoology at the Polish Academy of Sciences, ISSN 1508-1109 [doi]  [abs]
  74. Larsen, PA; Campbell, CR; Yoder, AD, Next-generation approaches to advancing eco-immunogenomic research in critically endangered primates., Molecular ecology resources, vol. 14 no. 6 (November, 2014), pp. 1198-1209, ISSN 1755-098X [doi]  [abs]
  75. Brown, JL; Cameron, A; Yoder, AD; Vences, M, A necessarily complex model to explain the biogeography of the amphibians and reptiles of Madagascar., Nature communications, vol. 5 (October, 2014), pp. 5046 [doi]  [abs]
  76. Martin, SL; Yoder, AD, Theme and variations: heterothermy in mammals., Integrative and comparative biology, vol. 54 no. 3 (September, 2014), pp. 439-442, ISSN 1540-7063 [doi]  [abs]
  77. Villanueva-Cañas, JL; Faherty, SL; Yoder, AD; Albà, MM, Comparative genomics of mammalian hibernators using gene networks., Integrative and comparative biology, vol. 54 no. 3 (September, 2014), pp. 452-462, ISSN 1540-7063 [doi]  [abs]
  78. Katzourakis, A; Aiewsakun, P; Jia, H; Wolfe, ND; LeBreton, M; Yoder, AD; Switzer, WM, Discovery of prosimian and afrotherian foamy viruses and potential cross species transmissions amidst stable and ancient mammalian co-evolution., Retrovirology, vol. 11 (August, 2014), pp. 61 [doi]  [abs]
  79. Larsen, PA; Heilman, AM; Yoder, AD, The utility of PacBio circular consensus sequencing for characterizing complex gene families in non-model organisms., BMC genomics, vol. 15 (August, 2014), pp. 720 [doi]  [abs]
  80. Nowak, MD; Haller, BC; Yoder, AD, The founding of Mauritian endemic coffee trees by a synchronous long-distance dispersal event., Journal of evolutionary biology, vol. 27 no. 6 (June, 2014), pp. 1229-1239, ISSN 1010-061X [doi]  [abs]
  81. Zehr, SM; Taylor, JP; Roach, RG; Haring, D; Cameron, FH; Dean, M; Yoder, AD, Prosimian primate life history profiles generated from the new Duke Lemur Center Database (coming soon to a URL near you!), AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, vol. 153 (March, 2014), pp. 281-281, WILEY-BLACKWELL, ISSN 0002-9483 [Gateway.cgi]
  82. Blair, C; Heckman, KL; Russell, AL; Yoder, AD, Multilocus coalescent analyses reveal the demographic history and speciation patterns of mouse lemur sister species., BMC evolutionary biology, vol. 14 no. 1 (March, 2014), pp. 57 [doi]  [abs]
  83. Zehr, SM; Roach, RG; Haring, D; Taylor, J; Cameron, FH; Yoder, AD, Life history profiles for 27 strepsirrhine primate taxa generated using captive data from the Duke Lemur Center., Scientific data, vol. 1 (January, 2014), pp. 140019 [doi]  [abs]
  84. Yoder, AD; Larsen, PA, The molecular evolutionary dynamics of the vomeronasal receptor (class 1) genes in primates: a gene family on the verge of a functional breakdown., Frontiers in neuroanatomy, vol. 8 (January, 2014), pp. 153 [doi]  [abs]
  85. Jenkins, RKB; Tognelli, MF; Bowles, P; Cox, N; Brown, JL; Chan, L; Andreone, F; Andriamazava, A; Andriantsimanarilafy, RR; Anjeriniaina, M; Bora, P; Brady, LD; Hantalalaina, EF; Glaw, F; Griffiths, RA; Hilton-Taylor, C; Hoffmann, M; Katariya, V; Rabibisoa, NH; Rafanomezantsoa, J; Rakotomalala, D; Rakotondravony, H; Rakotondrazafy, NA; Ralambonirainy, J; Ramanamanjato, J-B; Randriamahazo, H; Randrianantoandro, JC; Randrianasolo, HH; Randrianirina, JE; Randrianizahana, H; Raselimanana, AP; Rasolohery, A; Ratsoavina, FM; Raxworthy, CJ; Robsomanitrandrasana, E; Rollande, F; van Dijk, PP; Yoder, AD; Vences, M, Extinction risks and the conservation of Madagascar's reptiles., PloS one, vol. 9 no. 8 (January, 2014), pp. e100173 [doi]  [abs]
  86. Mckenney, EA; Rodrigo, A; Yoder, AD, Species-specific assembly of the gut microbiota in lemurs, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 54 (January, 2014), pp. E137-E137, OXFORD UNIV PRESS INC, ISSN 1540-7063 [Gateway.cgi]
  87. Yoder, AD, Gene flow happens., Evolutionary anthropology, vol. 23 no. 1 (January, 2014), pp. 15-17, ISSN 1060-1538 [doi]  [abs]
  88. Yoder, AD; Chan, LM; dos Reis, M; Larsen, PA; Campbell, CR; Rasoloarison, R; Barrett, M; Roos, C; Kappeler, P; Bielawski, J; Yang, Z, Molecular evolutionary characterization of a V1R subfamily unique to strepsirrhine primates., Genome biology and evolution, vol. 6 no. 1 (January, 2014), pp. 213-227 [24398377], [doi]  [abs]
  89. Shi, JJ; Chan, LM; Rakotomalala, Z; Heilman, AM; Goodman, SM; Yoder, AD, Latitude drives diversification in Madagascar's endemic dry forest rodent eliurus myoxinus (subfamily Nesomyinae), Biological Journal of the Linnean Society, vol. 110 no. 3 (November, 2013), pp. 500-517, ISSN 0024-4066 [doi]  [abs]
  90. Chan, LM; Archie, JW; Yoder, AD; Fitzgerald, LA, Erratum: Review of the systematic status of Sceloporus arenicolus Degenhardt and Jones, 1972 with an estimate of divergence time (Zootaxa (2013) 3664:3 (312-320)), Zootaxa, vol. 3686 no. 1 (July, 2013), pp. 99-100, MAGNOLIA PRESS, ISSN 1175-5326 [doi]
  91. Barrett, MA; Brown, JL; Yoder, AD, Conservation: Protection for trade of precious rosewood., Nature, vol. 499 no. 7456 (July, 2013), pp. 29, Springer Nature, ISSN 0028-0836 [doi]
  92. Rasoloarison, RM; Weisrock, DW; Yoder, AD; Rakotondravony, D; Kappeler, PM, Two New Species of Mouse Lemurs (Cheirogaleidae: Microcebus) from Eastern Madagascar, International Journal of Primatology, vol. 34 no. 3 (June, 2013), pp. 455-469, ISSN 0164-0291 [doi]  [abs]
  93. Yoder, AD, Evolution. Fossils versus clocks., Science (New York, N.Y.), vol. 339 no. 6120 (February, 2013), pp. 656-658 [23393254], [doi]
  94. Yoder, AD, The lemur revolution starts now: the genomic coming of age for a non-model organism., Molecular phylogenetics and evolution, vol. 66 no. 2 (February, 2013), pp. 442-452 [22982436], [doi]  [abs]
  95. Chan, LM; Archie, JW; Yoder, AD; Fitzgerald, LA, Review of the systematic status of Sceloporus arenicolus Degenhardt and Jones, 1972 with an estimate of divergence time., Zootaxa, vol. 3664 no. 3 (January, 2013), pp. 312-320, ISSN 1175-5326 [doi]  [abs]
  96. Blanco, MB; Dausmann, KH; Ranaivoarisoa, JF; Yoder, AD, Underground hibernation in a primate., Scientific reports, vol. 3 (January, 2013), pp. 1768 [23636180], [doi]  [abs]
  97. Barrett, M.A., Brown, J.L., Junge, R.E. and A.D. Yoder, Climate change, predictive modeling and lemur health: assessing impacts of changing climate on health and conservation in Madagascar, Biological Conservation, vol. 157 (2013), pp. 409-422
  98. A.D. Yoder, The lemur revolution starts now: the genomic coming of age of a non-model organism, Molecular Phylogenetics and Evolution, vol. 66 no. 2 (2013), pp. 442-452
  99. Krystal, AD; Schopler, B; Kobbe, S; Williams, C; Rakatondrainibe, H; Yoder, AD; Klopfer, P, The relationship of sleep with temperature and metabolic rate in a hibernating primate., PLoS One, vol. 8 no. 9 (2013), pp. e69914 [24023713], [doi]  [abs]
  100. Klopfer, PH; Krystal, A; Williams, C; Yoder, A, Neuroethology: Do hibernating primates sleep?, Nova Acta Leopoldina, vol. 111 no. 380 (2013), pp. 15-27
  101. Nowak, MD; Davis, AP; Yoder, AD, Sequence data from new plastid and nuclear cosii regions resolves early diverging lineages in coffea (Rubiaceae), Systematic Botany, vol. 37 no. 4 (October, 2012), pp. 995-1005, American Society of Plant Taxonomists, ISSN 0363-6445 [doi]  [abs]
  102. Chan, LM; Choi, D; Raselimanana, AP; Rakotondravony, HA; Yoder, AD, Defining spatial and temporal patterns of phylogeographic structure in Madagascar's iguanid lizards (genus Oplurus)., Molecular ecology, vol. 21 no. 15 (August, 2012), pp. 3839-3851 [22694729], [doi]  [abs]
  103. Weisrock, DW; Smith, SD; Chan, LM; Biebouw, K; Kappeler, PM; Yoder, AD, Concatenation and concordance in the reconstruction of mouse lemur phylogeny: an empirical demonstration of the effect of allele sampling in phylogenetics., Molecular biology and evolution, vol. 29 no. 6 (June, 2012), pp. 1615-1630, ISSN 0737-4038 [doi]  [abs]
  104. Faherty, SL; Yoder, AD, Assessing gene expression profiles during seasonal thermoregulation in a hibernating primate, Cheirogaleus medius, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 52 (April, 2012), pp. E242-E242, OXFORD UNIV PRESS INC, ISSN 1540-7063 [Gateway.cgi]
  105. Perry, GH; Melsted, P; Marioni, JC; Wang, Y; Bainer, R; Pickrell, JK; Michelini, K; Zehr, S; Yoder, AD; Stephens, M; Pritchard, JK; Gilad, Y, Comparative RNA sequencing reveals substantial genetic variation in endangered primates., Genome research, vol. 22 no. 4 (April, 2012), pp. 602-610, ISSN 1088-9051 [doi]  [abs]
  106. Nowak, M.D., Davis, A.P. and A.D. Yoder, Sequence data from new plastid and nuclear COSII regions resolves early diverging lineages in Coffea (Rubiaceae), Systematic Botany, vol. 37 no. 4 (2012), pp. 995-1005
  107. Klopfer, P., Krystal. A., Williams, C. and A.D. Yoder, Neuroethology: do hibernating primates sleep?, Nova Acta Leopoldina, vol. 111 no. 380 (2012), pp. 15-27
  108. Barrett, MA; Brown, JL; Junge, RE; Yoder, AD, Climate change, predictive modeling and lemur health: assessing impacts of changing climate on health and conservation in Madagascar, Conservation Biology, vol. 157 (2012), pp. 409-422, Elsevier BV, ISSN 0006-3207 [doi]  [abs]
  109. Junge, RE; Barrett, MA; Yoder, AD, Effects of anthropogenic disturbance on indri (Indri indri) health in Madagascar., American journal of primatology, vol. 73 no. 7 (July, 2011), pp. 632-642, ISSN 0275-2565 [doi]  [abs]
  110. Chan, LM; Brown, JL; Yoder, AD, Integrating statistical genetic and geospatial methods brings new power to phylogeography., Molecular phylogenetics and evolution, vol. 59 no. 2 (May, 2011), pp. 523-537 [21352934], [doi]  [abs]
  111. Heilman, AM; Chan, LM; Rakotomalala, Z; Goodman, SM; Yoder, AD, A multilocus phylogeographic study of a rodent (Eliurus myoxinus) distributed throughout western Madagascar, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 51 (March, 2011), pp. E200-E200, OXFORD UNIV PRESS INC, ISSN 1540-7063 [Gateway.cgi]
  112. Chan, LM; Goodman, SM; Nowak, MD; Weisrock, DW; Yoder, AD, Increased population sampling confirms low genetic divergence among Pteropus (Chiroptera: Pteropodidae) fruit bats of Madagascar and other western Indian Ocean islands., PLoS currents, vol. 3 (March, 2011), pp. RRN1226 [21479256], [doi]  [abs]
  113. Nowak, MD; Davis, AP; Anthony, F; Yoder, AD, Expression and trans-specific polymorphism of self-incompatibility RNases in coffea (Rubiaceae)., PloS one, vol. 6 no. 6 (January, 2011), pp. e21019 [21731641], [doi]  [abs]
  114. Chan, L., Brown, J. and A.D. Yoder, Merging population genetics and geospatial analysis brings new power to phylogeography, Molecular Phylogenetics and Evolution, vol. 59 no. 2 (2011), pp. 523 – 537
  115. Weisrock, D.W., Smith, S.M., *Chan, L.M., Biebouw, K., Kappeler, P.M. and A.D. Yoder, Concatenation and concordance in the reconstruction of mouse lemur phylogeny: an empirical demonstration of the effect of allele sampling in phylogenetics, Molecular Biology and Evolution (2011)
  116. Klopfer, P., Krystal. A., Williams, C. and A.D. Yoder, Neuroethology: do hibernating primates sleep?, Nova Acta Leopoldina (2011)
  117. Perry, G.H., Melsted, P., Marioni, J.C., Wang, Y., Bainer, R., Pickrell, J.K., Michelini, K., Zehr, S., Yoder, A.D., Stephens, M., Pritchard, J.K., and Y. Gilad, Comparative RNS sequencing reveals substantial genetic variation in endangered primates, Genome Research (2011)
  118. Goodman, SM; Chan, LM; Nowak, MD; Yoder, AD, Phylogeny and biogeography of western Indian Ocean Rousettus (Chiroptera: Pteropodidae)., Journal of mammalogy, vol. 91 no. 3 (June, 2010), pp. 593-606, Oxford University Press (OUP), ISSN 0022-2372 [doi]  [abs]
  119. Barrett, MA; Brown, JL; Morikawa, MK; Labat, J-N; Yoder, AD, Conservation. CITES designation for endangered rosewood in Madagascar., Science (New York, N.Y.), vol. 328 no. 5982 (May, 2010), pp. 1109-1110 [20508116], [doi]
  120. Weisrock, DW; Rasoloarison, RM; Fiorentino, I; Ralison, JM; Goodman, SM; Kappeler, PM; Yoder, AD, Delimiting species without nuclear monophyly in Madagascar's mouse lemurs., PloS one, vol. 5 no. 3 (March, 2010), pp. e9883 [20360988], [doi]  [abs]
  121. Hickerson, MJ; Carstens, BC; Cavender-Bares, J; Crandall, KA; Graham, CH; Johnson, JB; Rissler, L; Victoriano, PF; Yoder, AD, Phylogeography's past, present, and future: 10 years after Avise, 2000., Molecular phylogenetics and evolution, vol. 54 no. 1 (January, 2010), pp. 291-301, ISSN 1055-7903 [doi]  [abs]
  122. O'Brien, J; Mariani, C; Olson, L; Russell, AL; Say, L; Yoder, AD; Hayden, TJ, Multiple colonisations of the western Indian Ocean by Pteropus fruit bats (Megachiroptera: Pteropodidae): the furthest islands were colonised first., Molecular phylogenetics and evolution, vol. 51 no. 2 (May, 2009), pp. 294-303, ISSN 1055-7903 [doi]  [abs]
  123. Raselimanana, AP; Noonan, B; Karanth, KP; Gauthier, J; Yoder, AD, Phylogeny and evolution of Malagasy plated lizards., Molecular phylogenetics and evolution, vol. 50 no. 2 (February, 2009), pp. 336-344, ISSN 1055-7903 [doi]  [abs]
  124. Groeneveld, LF; Weisrock, DW; Rasoloarison, RM; Yoder, AD; Kappeler, PM, Species delimitation in lemurs: multiple genetic loci reveal low levels of species diversity in the genus Cheirogaleus., BMC evolutionary biology, vol. 9 no. 1 (February, 2009), pp. 30, ISSN 1471-2148 [doi]  [abs]
  125. Noonan, BP; Yoder, AD, Anonymous nuclear markers for Malagasy plated lizards (Zonosaurus)., Molecular ecology resources, vol. 9 no. 1 (January, 2009), pp. 402-404, ISSN 1755-098X [21564662], [doi]  [abs]
  126. Horvath, JE; Weisrock, DW; Embry, SL; Fiorentino, I; Balhoff, JP; Kappeler, P; Wray, GA; Willard, HF; Yoder, AD, Development and application of a phylogenomic toolkit: resolving the evolutionary history of Madagascar's lemurs., Genome research, vol. 18 no. 3 (March, 2008), pp. 489-499, ISSN 1088-9051 [18245770], [doi]  [abs]
  127. Russell, AL; Goodman, SM; Fiorentino, I; Yoder, AD, Population genetic analysis of Myzopoda (Chiroptera: Myzopodidae) in Madagascar, Journal of Mammalogy, vol. 89 no. 1 (February, 2008), pp. 209-221, Oxford University Press (OUP), ISSN 0022-2372 [doi]  [abs]
  128. Riddle, B; Dawson, MN; Hadly, EA; Hafner, DJ; Hickerson, MJ; Mantooth, SJ; Yoder, AD, The role of molecular genetics in sculpting the future of integrative biogeography, Progress in Physical Geography, vol. 32 no. 2 (January, 2008), pp. 173-202, SAGE Publications, ISSN 0309-1333 [doi]  [abs]
  129. Yoder, AD, Lemurs., Current biology : CB, vol. 17 no. 20 (October, 2007), pp. R866-R868, ISSN 0960-9822 [17956741], [doi]
  130. Heckman, KL; Mariani, CL; Rasoloarison, R; Yoder, AD, Multiple nuclear loci reveal patterns of incomplete lineage sorting and complex species history within western mouse lemurs (Microcebus)., Molecular phylogenetics and evolution, vol. 43 no. 2 (May, 2007), pp. 353-367, ISSN 1055-7903 [doi]  [abs]
  131. Naghibalhossaini, F; Yoder, AD; Tobi, M; Stanners, CP, Evolution of a tumorigenic property conferred by glycophosphatidyl-inositol membrane anchors of carcinoembryonic antigen gene family members during the primate radiation., Molecular biology of the cell, vol. 18 no. 4 (April, 2007), pp. 1366-1374, ISSN 1059-1524 [doi]  [abs]
  132. Russell, AL; Ranivo, J; Palkovacs, EP; Goodman, SM; Yoder, AD, Working at the interface of phylogenetics and population genetics: a biogeographical analysis of Triaenops spp. (Chiroptera: Hipposideridae)., Molecular ecology, vol. 16 no. 4 (February, 2007), pp. 839-851, ISSN 0962-1083 [repository], [doi]  [abs]
  133. Yoder, AD; Heckman, KL, Evolutionary origins of malagasy primates., AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY (January, 2007), pp. 254-254, WILEY-LISS, ISSN 0002-9483 [Gateway.cgi]
  134. Yoder, AD; Nowak, MD, Has vicariance or dispersal been the predominant biogeographic force in Madagascar? Only time will tell, Annual Review of Ecology, Evolution, and Systematics, vol. 37 no. 1 (December, 2006), pp. 405-431, ANNUAL REVIEWS, ISSN 1543-592X [doi]  [abs]
  135. Heckman, KL; Rasoazanabary, E; Machlin, E; Godfrey, LR; Yoder, AD, Incongruence between genetic and morphological diversity in Microcebus griseorufus of Beza Mahafaly., BMC evolutionary biology, vol. 6 (November, 2006), pp. 98, ISSN 1471-2148 [doi]  [abs]
  136. Goodman, SM; Cardiff, SG; Ranivo, J; Russell, AL; Yoder, AD, A new species of Emballonura (Chiroptera: Emballonuridae) from the dry regions of madagascar, American Museum Novitates no. 3538 (January, 2006), pp. 1-24, ISSN 0003-0082 [doi]  [abs]
  137. Goodman, S.M., Cardiff, S. G., Ranivo, J., Russell, A.L. and A.D. Yoder, A new species of Emballonura (Emballonuridae: Chiroptera) from the dry regions of Madagascar., American Museum Novitates, vol. No. 3538: (2006), pp. 1-24
  138. Tan, Y; Yoder, AD; Yamashita, N; Li, W-H, Evidence from opsin genes rejects nocturnality in ancestral primates., Proceedings of the National Academy of Sciences of the United States of America, vol. 102 no. 41 (October, 2005), pp. 14712-14716, ISSN 0027-8424 [doi]  [abs]
  139. Yoder, AD; Olson, LE; Hanley, C; Heckman, KL; Rasoloarison, R; Russell, AL; Ranivo, J; Soarimalala, V; Karanth, KP; Raselimanana, AP; Goodman, SM, A multidimensional approach for detecting species patterns in Malagasy vertebrates., in Systematics and the Origin of Species: On Ernst Mayr's 100th Anniversary, Proceedings of the National Academy of Sciences of the United States of America, vol. 102 Suppl 1 no. SUPPL. 1 (May, 2005), pp. 6587-6594, ISSN 0027-8424, ISBN 0309547601 [doi]  [abs]
  140. Karanth, KP; Delefosse, T; Rakotosamimanana, B; Parsons, TJ; Yoder, AD, Ancient DNA from giant extinct lemurs confirms single origin of Malagasy primates., Proceedings of the National Academy of Sciences of the United States of America, vol. 102 no. 14 (April, 2005), pp. 5090-5095 [doi]  [abs]
  141. Karanth, KP; Palkovacs, E; Gerlach, J; Glaberman, S; Hume, JP; Caccone, A; Yoder, AD, Native Seychelles tortoises or Aldabran imports? The importance of radiocarbon dating for ancient DNA studies, Amphibia Reptilia, vol. 26 no. 1 (March, 2005), pp. 116-121, BRILL [repository], [doi]
  142. Yoder, AD, The biogeography of Madagascar: where to turn when the fossils aren’t there., Paleontological Society Papers, vol. II (2005), pp. 129-139
  143. Olson, LE; Goodman, SM; Yoder, AD, Illumination of cryptic species boundaries in long-tailed shrew tenrecs (Mammalia: Tenrecidae; Microgale), with new insights into geographic variation and distributional constraints, Biological Journal of the Linnean Society, vol. 83 no. 1 (September, 2004), pp. 1-22, Oxford University Press (OUP) [doi]  [abs]
  144. Yoder, AD; Yang, Z, Divergence dates for Malagasy lemurs estimated from multiple gene loci: geological and evolutionary context., Molecular ecology, vol. 13 no. 4 (April, 2004), pp. 757-773 [doi]  [abs]
  145. Kunstman, KJ; Puffer, B; Korber, BT; Kuiken, C; Smith, UR; Kunstman, J; Stanton, J; Agy, M; Shibata, R; Yoder, AD; Pillai, S; Doms, RW; Marx, P; Wolinsky, SM, Structure and function of CC-chemokine receptor 5 homologues derived from representative primate species and subspecies of the taxonomic suborders Prosimii and Anthropoidea., Journal of virology, vol. 77 no. 22 (November, 2003), pp. 12310-12318 [doi]  [abs]
  146. Yang, Z; Yoder, AD, Comparison of likelihood and Bayesian methods for estimating divergence times using multiple gene Loci and calibration points, with application to a radiation of cute-looking mouse lemur species., Systematic biology, vol. 52 no. 5 (October, 2003), pp. 705-716 [doi]  [abs]
  147. Yoder, AD; Burns, MM; Zehr, S; Delefosse, T; Veron, G; Goodman, SM; Flynn, JJ, Single origin of Malagasy Carnivora from an African ancestor., Nature, vol. 421 no. 6924 (February, 2003), pp. 734-737 [doi]  [abs]
  148. Eriksson, T; Hibbs, MS; Yoder, AD; Delwiche, CF; Donoghue, MJ, The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of chloroplast DNA, International Journal of Plant Sciences, vol. 164 no. 2 (January, 2003), pp. 197-211, University of Chicago Press [doi]  [abs]
  149. Yoder, AD; Burns, MM; Génin, F, Molecular evidence of reproductive isolation in sympatric sibling species of mouse lemurs, International Journal of Primatology, vol. 23 no. 6 (December, 2002), pp. 1335-1343 [doi]  [abs]
  150. Olson, LE; Yoder, AD, Using secondary structure to identify ribosomal numts: cautionary examples from the human genome., Molecular biology and evolution, vol. 19 no. 1 (January, 2002), pp. 93-100, ISSN 0737-4038 [doi]  [abs]
  151. Yoder, AD, Ancient DNA from Megaladapis edwardsi., Folia primatologica; international journal of primatology, vol. 72 no. 6 (November, 2001), pp. 342-343 [doi]
  152. Yoder, AD; Irwin, JA; Payseur, BA, Failure of the ILD to determine data combinability for slow loris phylogeny., Systematic biology, vol. 50 no. 3 (June, 2001), pp. 408-424, ISSN 1063-5157 [doi]  [abs]
  153. Yoder, AD; Rasoloarison, RM; Goodman, SM; Irwin, JA; Atsalis, S; Ravosa, MJ; Ganzhorn, JU, Remarkable species diversity in Malagasy mouse lemurs (primates, Microcebus)., Proceedings of the National Academy of Sciences of the United States of America, vol. 97 no. 21 (October, 2000), pp. 11325-11330, ISSN 0027-8424 [doi]  [abs]
  154. Yoder, AD; Irwin, JA; Goodman, SM; Rakotoarisoa, SV, Genetic tests of the taxonomic status of the ring-tailed lemur (Lemur catta) from the high mountain zone of the Andringitra Massif, Madagascar, Journal of Zoology, vol. 252 no. 1 (September, 2000), pp. 1-9, WILEY, ISSN 0952-8369 [doi]  [abs]
  155. Yoder, AD; Yang, Z, Estimation of primate speciation dates using local molecular clocks., Molecular biology and evolution, vol. 17 no. 7 (July, 2000), pp. 1081-1090, ISSN 0737-4038 [doi]  [abs]
  156. Yang, Z; Yoder, AD, Estimation of the transition/transversion rate bias and species sampling., Journal of molecular evolution, vol. 48 no. 3 (March, 1999), pp. 274-283, ISSN 0022-2844 [doi]  [abs]
  157. Yoder, AD; Irwin, JA, Phylogeny of the Lemuridae: Effects of character and taxon sampling on resolution of species relationships within Eulemur, Cladistics, vol. 15 no. 3 (January, 1999), pp. 351-361, WILEY [doi]  [abs]
  158. Yoder, A, An infinitude of connecting links, Trends in Ecology & Evolution, vol. 12 no. 3 (March, 1997), pp. 86-88, Elsevier BV, ISSN 0169-5347 [doi]
  159. Yoder, AD, Back to the future: A synthesis of strepsirrhine systematics, Evolutionary Anthropology, vol. 6 no. 1 (January, 1997), pp. 11-22, WILEY [doi]  [abs]
  160. Yoder, AD; Vilgalys, R; Ruvolo, M, Molecular evolutionary dynamics of cytochrome b in strepsirrhine primates: the phylogenetic significance of third-position transversions., Molecular biology and evolution, vol. 13 no. 10 (December, 1996), pp. 1339-1350, ISSN 0737-4038 [doi]  [abs]
  161. Yoder, AD; Cartmill, M; Ruvolo, M; Smith, K; Vilgalys, R, Ancient single origin for Malagasy primates., Proceedings of the National Academy of Sciences of the United States of America, vol. 93 no. 10 (May, 1996), pp. 5122-5126, ISSN 0027-8424 [doi]  [abs]
  162. Yoder, AD, Relative position of the Cheirogaleidae in strepsirhine phylogeny: a comparison of morphological and molecular methods and results., American journal of physical anthropology, vol. 94 no. 1 (May, 1994), pp. 25-46 [doi]  [abs]
  163. Cartmill, M; Yoder, AD, Molecules and morphology in Primate Systematics: An introduction, American Journal of Physical Anthropology, vol. 94 no. 1 (January, 1994), pp. 1-1, WILEY, ISSN 0002-9483 [Gateway.cgi], [doi]
  164. Yoder, AD, The applications and limitations of ontogenetic comparisons for phylogeny reconstruction: the case of the strepsirhine internal carotid artery, Journal of Human Evolution, vol. 23 no. 2 (January, 1992), pp. 183-196, Elsevier BV, ISSN 0047-2484 [doi]  [abs]
  165. Kay, RF; Thewissen, JGM; Yoder, AD, Cranial anatomy of Ignacius graybullianus and the affinities of the Plesiadapiformes, American Journal of Physical Anthropology, vol. 89 no. 4 (January, 1992), pp. 477-498, WILEY, ISSN 0002-9483 [doi]  [abs]
  166. YODER, AD, A COMPARISON OF CHARACTER ONTOGENY IN 2 STREPSIRHINE PRIMATES - APPLICATIONS AND LIMITATIONS FOR PHYLOGENETICS, AMERICAN ZOOLOGIST, vol. 31 no. 5 (January, 1991), pp. A62-A62, AMER SOC ZOOLOGISTS, ISSN 0003-1569 [Gateway.cgi]
  167. YODER, AD, A PHYLOGENETIC SYSTEMATIC STUDY OF THE TRUE LORISES, AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, vol. 78 no. 2 (February, 1989), pp. 327-327, WILEY-LISS, ISSN 0002-9483 [Gateway.cgi]

Book Chapters

  1. Yoder, AD; Weisrock, DW; Rasolorison, RM; Kappeler, PM, Cheirogaleid diversity and evolution: big questions about small primates, in . Evolutionary Biology and Ecology of the Cheirogaleidae, edited by Lehman, SL; Radespiel, L; Zimmermann, E (April, 2016), pp. 3-20, Cambridge University Press, ISBN 9781107075597 [doi]
  2. Karanth, K.P. and A.D. Yoder., Geographic origins of aDNA samples and prospects for aDNA studies in the tropics., in Molecular Markers, PCR, Bioinformatics and Ancient DNA – Technology, Troubleshooting And Applications, G. Dorado,ed. (2009), Science Publishers
  3. Yoder, AD; Heckman, K, Mouse lemur phylogeography revises a model of ecogeographic constraint in Madagascar, in Primate Biogeography: Progress and Prospects, J. Fleagle and S.M. Lehman, eds., edited by Fleagle, J; Lehman, SM (2006), pp. 255-268, Kluwer Press
  4. Yoder, AD; Olson, LE; Hanley, C; Heckman, KL; Rasoloarison, R; Russell, AL; Ranivo, J; Soarimalala, V; Praveen Karanth, K; Raselimanana, AP; Goodman, SM, A multidimensional approach for detecting species patterns in malagasy vertebrates, in Systematics and the Origin of Species: On Ernst Mayr's 100th Anniversary (October, 2005), pp. 203-228, National Academies Press, ISBN 9780309095365 [doi]  [abs]
  5. Yoder, AD, The phylogenetic position of genus Tarsius: whose side are you on?, in Tarsiers: Past, Present, and Future, edited by Wright, PC; Simons, EL; Gursjy, S (2003), pp. 161-175, Rutgers Universioty Press
  6. Yoder, AD, Phylogeny of the lemurs, in The Natural History of Madagascar, edited by Goodman, SM; Benstead, J (2003), pp. 1242-1247, University of Chicago Press
  7. Yoder, AD; Flynn, JJ, Origin of Malagasy Carnivora, in The Natural History of Madagascar, edited by Goodman, SM; Benstead, J (2003), pp. 1253-1256, University of Chicago Press
  8. Yoder, AD; Delefosse, T, Ancient DNA, in Yearbook of Science and Technology (2002), pp. 9-14, McGraw-Hill
  9. Yoder, AD; Rakotosamimanana, B; Parsons, TJ, Ancient DNA in subfossil lemurs: methodological challenges and their solutions, in New Directions in Lemur Studies, edited by Rasaminanana, HB; Rakotosamimanana, S; Goodman, S; Ganshorn, J (1999), pp. 1-17, Plenumn Press
  10. Yoder, AD, The use of phylogeny for reconstructing lemuriform biogeography, in Biogeographie de Madagascar, edited by Lourenco, WR (1996), pp. 245-258, Editions de l’ORSTROM

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