Publications of Paul S. Manos    :chronological  alphabetical  combined  bibtex listing:

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Papers Published

  1. Crowl, AA; Fritsch, PW; Tiley, GP; Lynch, NP; Ranney, TG; Ashrafi, H; Manos, PS, A first complete phylogenomic hypothesis for diploid blueberries (Vaccinium section Cyanococcus)., Am J Bot, vol. 109 no. 10 (October, 2022), pp. 1596-1606 [doi]  [abs].
  2. Zhou, B-F; Yuan, S; Crowl, AA; Liang, Y-Y; Shi, Y; Chen, X-Y; An, Q-Q; Kang, M; Manos, PS; Wang, B, Phylogenomic analyses highlight innovation and introgression in the continental radiations of Fagaceae across the Northern Hemisphere., Nature Communications, vol. 13 no. 1 (March, 2022), pp. 1320 [doi]  [abs].
  3. Manos, PS; Hipp, AL, An updated infrageneric classification of the north american oaks (Quercus subgenus quercus): Review of the contribution of phylogenomic data to biogeography and species diversity, Forests, vol. 12 no. 6 (June, 2021) [doi]  [abs].
  4. Crowl, AA; Manos, PS; McVay, JD; Lemmon, AR; Lemmon, EM; Hipp, AL, Uncovering the genomic signature of ancient introgression between white oak lineages (Quercus)., The New Phytologist, vol. 226 no. 4 (May, 2020), pp. 1158-1170 [doi]  [abs].
  5. Hipp, AL; Manos, PS; Hahn, M; Avishai, M; Bodénès, C; Cavender-Bares, J; Crowl, AA; Deng, M; Denk, T; Fitz-Gibbon, S; Gailing, O; González-Elizondo, MS; González-Rodríguez, A; Grimm, GW; Jiang, X-L; Kremer, A; Lesur, I; McVay, JD; Plomion, C; Rodríguez-Correa, H; Schulze, E-D; Simeone, MC; Sork, VL; Valencia-Avalos, S, Genomic landscape of the global oak phylogeny., The New Phytologist, vol. 226 no. 4 (May, 2020), pp. 1198-1212 [doi]  [abs].
  6. Hipp, AL; Manos, PS; Cavender-Bares, J, ASCENT OF THE OAKS, Scientific American, vol. 323 no. 2 (2020), pp. 42-49 .
  7. Denk, T; Hill, RS; Simeone, MC; Cannon, C; Dettmann, ME; Manos, PS, Comment on "Eocene Fagaceae from Patagonia and Gondwanan legacy in Asian rainforests"., Science (New York, N.Y.), vol. 366 no. 6467 (November, 2019), pp. eaaz2189 [doi]  [abs].
  8. One Thousand Plant Transcriptomes Initiative,, One thousand plant transcriptomes and the phylogenomics of green plants., Nature, vol. 574 no. 7780 (October, 2019), pp. 679-685 [doi]  [abs].
  9. Hipp, AL; Whittemore, AT; Garner, M; Hahn, M; Fitzek, E; Guichoux, E; Cavender-Bares, J; Gugger, PF; Manos, PS; Pearse, IS; Cannon, CH, Genomic Identity of White Oak Species in an Eastern North American Syngameon, Annals of the Missouri Botanical Garden, vol. 104 no. 3 (October, 2019), pp. 455-477 [doi]  [abs].
  10. Cavender-Bares, J; Kothari, S; Meireles, JE; Kaproth, MA; Manos, PS; Hipp, AL, The role of diversification in community assembly of the oaks (Quercus L.) across the continental U.S., American Journal of Botany, vol. 105 no. 3 (March, 2018), pp. 565-586 [doi]  [abs].
  11. Meireles, JE; Manos, PS, Pervasive migration across rainforest and sandy coastal plain Aechmea nudicaulis (Bromeliaceae) populations despite contrasting environmental conditions., Molecular Ecology, vol. 27 no. 5 (March, 2018), pp. 1261-1272 [doi]  [abs].
  12. Harnik, PG; Maherali, H; Miller, JH; Manos, PS, Geographic range velocity and its association with phylogeny and life history traits in North American woody plants., Ecology and Evolution, vol. 8 no. 5 (March, 2018), pp. 2632-2644 [doi]  [abs].
  13. Deng, M; Jiang, X-L; Hipp, AL; Manos, PS; Hahn, M, Phylogeny and biogeography of East Asian evergreen oaks (Quercus section Cyclobalanopsis; Fagaceae): Insights into the Cenozoic history of evergreen broad-leaved forests in subtropical Asia., Molecular Phylogenetics and Evolution, vol. 119 (February, 2018), pp. 170-181 [doi]  [abs].
  14. Hipp, AL; Manos, PS; González-Rodríguez, A; Hahn, M; Kaproth, M; McVay, JD; Avalos, SV; Cavender-Bares, J, Sympatric parallel diversification of major oak clades in the Americas and the origins of Mexican species diversity., The New Phytologist, vol. 217 no. 1 (January, 2018), pp. 439-452 [doi]  [abs].
  15. Hauser, DA; Keuter, A; McVay, JD; Hipp, AL; Manos, PS, The evolution and diversification of the red oaks of the California Floristic Province (Quercus section Lobatae, series Agrifoliae)., American Journal of Botany, vol. 104 no. 10 (October, 2017), pp. 1581-1595 [doi]  [abs].
  16. Fitz-Gibbon, S; Hipp, AL; Pham, KK; Manos, PS; Sork, VL, Phylogenomic inferences from reference-mapped and de novo assembled short-read sequence data using RADseq sequencing of California white oaks (Quercus section Quercus)., Genome, vol. 60 no. 9 (September, 2017), pp. 743-755 [doi]  [abs].
  17. Pham, KK; Hipp, AL; Manos, PS; Cronn, RC, A time and a place for everything: phylogenetic history and geography as joint predictors of oak plastome phylogeny., Genome, vol. 60 no. 9 (September, 2017), pp. 720-732 [doi]  [abs].
  18. McVay, JD; Hauser, D; Hipp, AL; Manos, PS, Phylogenomics reveals a complex evolutionary history of lobed-leaf white oaks in western North America., Genome, vol. 60 no. 9 (September, 2017), pp. 733-742 [doi]  [abs].
  19. McVay, JD; Hipp, AL; Manos, PS, A genetic legacy of introgression confounds phylogeny and biogeography in oaks., Proceedings of the Royal Society B: Biological Sciences, vol. 284 no. 1854 (May, 2017), pp. 20170300 [doi]  [abs].
  20. Yu, Y; Xiang, Q; Manos, PS; Soltis, DE; Soltis, PS; Song, B-H; Cheng, S; Liu, X; Wong, G, Whole-genome duplication and molecular evolution in Cornus L. (Cornaceae) - Insights from transcriptome sequences., Plos One, vol. 12 no. 2 (January, 2017), pp. e0171361 [doi]  [abs].
  21. Denk, T; Grimm, GW; Manos, PS; Deng, M; Hipp, AL, An Updated Infrageneric Classification of the Oaks: Review of Previous Taxonomic Schemes and Synthesis of Evolutionary Patterns, in Tree Physiology (2017), pp. 13-38, Springer International Publishing [doi] .
  22. Johnson, MG; Lang, K; Manos, P; Golet, GH; Schierenbeck, KA, Evidence for genetic erosion of a California native tree, Platanus racemosa, via recent, ongoing introgressive hybridization with an introduced ornamental species, Conservation Genetics, vol. 17 no. 3 (June, 2016), pp. 593-602, Springer Nature [doi]  [abs].
  23. Cavender-Bares, J; González-Rodríguez, A; Eaton, DAR; Hipp, AAL; Beulke, A; Manos, PS, Phylogeny and biogeography of the American live oaks (Quercus subsection Virentes): a genomic and population genetics approach., Molecular Ecology, vol. 24 no. 14 (July, 2015), pp. 3668-3687 [doi]  [abs].
  24. Manos, PS; Meireles, JE, Biogeographic analysis of the woody plants of the Southern Appalachians: Implications for the origins of a regional flora., Am J Bot, vol. 102 no. 5 (May, 2015), pp. 780-804 [repository], [doi]  [abs].
  25. Cavender-Bares, J., D. Eaton, A. Gonzalez-Rodriguez, A. Hipp, A. Beulke and P.S. Manos, Phylogeny and biogeography of the American live oaks (Quercus subsection Virentes): A genomic and population genetic approach, Molecular Ecology (2015) .
  26. Hipp, AL; Eaton, DAR; Cavender-Bares, J; Fitzek, E; Nipper, R; Manos, PS, A framework phylogeny of the American oak clade based on sequenced RAD data., Plos One, vol. 9 no. 4 (January, 2014), pp. e93975 [doi]  [abs].
  27. Burge, DO; Hopkins, R; Tsai, Y-HE; Manos, PS, Limited hybridization across an edaphic disjunction between the gabbro-endemic shrub Ceanothus roderickii (Rhamnaceae) and the soil-generalist Ceanothus cuneatus., Am J Bot, vol. 100 no. 9 (September, 2013), pp. 1883-1895 [24018856], [doi]  [abs].
  28. Kremer, A; Abbott, AG; Carlson, JE; Manos, PS; Plomion, C; Sisco, P; Staton, ME; Ueno, S; Vendramin, GG, Genomics of Fagaceae, Tree Genetics & Genomes, vol. 8 no. 3 (June, 2012), pp. 583-610, Springer Nature [doi]  [abs].
  29. Burge, DO; Erwin, DM; Islam, MB; Kellermann, J; Kembel, SW; Wilken, DH; Manos, PS, Diversification of Ceanothus (Rhamnaceae) in the California Floristic province, International Journal of Plant Sciences, vol. 172 no. 9 (November, 2011), pp. 1137-1164, University of Chicago Press [doi]  [abs].
  30. Burge, DO; Manos, PS, Edaphic ecology and genetics of the gabbro-endemic shrub Ceanothus roderickii (Rhamnaceae)., Madroño, vol. 58 (2011), pp. 1-21 .
  31. Tsai, Y-HE; Manos, PS, Host density drives the postglacial migration of the tree parasite, Epifagus virginiana., Proceedings of the National Academy of Sciences of the United States of America, vol. 107 no. 39 (September, 2010), pp. 17035-17040 [20841421], [doi]  [abs].
  32. Stone, DE; Oh, S-H; Tripp, EA; G, LER; Manos, PS, Natural history, distribution, phylogenetic relationships, and conservation of Central American black walnuts (Juglans sect. Rhysocaryon), Journal Torrey Botanical Society, vol. 136 no. 1 (February, 2009), pp. 1-25, Torrey Botanical Society [doi]  [abs].
  33. Gugger, PF; McLachlan, JS; Manos, PS; Clark, JS, Inferring long-distance dispersal and topographic barriers during post-glacial colonization from the genetic structure of red maple (Acer rubrum L.) in New England, Journal of Biogeography, vol. 35 no. 9 (September, 2008), pp. 1665-1673, WILEY [doi]  [abs].
  34. Tripp, EA; Manos, PS, Is floral specialization an evolutionary dead-end? Pollination system transitions in Ruellia (Acanthaceae)., Evolution, vol. 62 no. 7 (July, 2008), pp. 1712-1737 [18410536], [doi]  [abs].
  35. Willson, CJ; Manos, PS; Jackson, RB, Hydraulic traits are influenced by phylogenetic history in the drought-resistant, invasive genus Juniperus (Cupressaceae)., American Journal of Botany, vol. 95 no. 3 (March, 2008), pp. 299-314 [21632355], [doi]  [abs].
  36. Manos, PS; Cannon, CH; Oh, SH, Phylogenetic relationships and taxonomic status of the paleoendemic Fagaceae of western North America: recognition of a new genus Notholithocarpus., Madroño, vol. 55 (2008), pp. 181-190 .
  37. Oh, SH; Manos, PS, Molecular phylogenetics and cupule evolution in Fagaceae as inferred from nuclear CRABS CLAW sequences, Taxon, vol. 57 no. 2 (2008), pp. 434-451  [abs].
  38. Douglas, NA; Manos, PS, Molecular phylogeny of Nyctaginaceae: taxonomy, biogeography, and characters associated with a radiation of xerophytic genera in North America., Am J Bot, vol. 94 no. 5 (May, 2007), pp. 856-872 [21636455], [doi]  [abs].
  39. Manos Soltis, PS; Soltis, DE; Manchester, SR; Oh, SH; Bell, CD; Dilcher, DL; Stone, DE, Phylogeny of extant and extinct Juglandaceae inferred from the integration of molecular and morphological data sets, Systematic Biology, vol. 56 no. 3 (2007), pp. 412-430 [17558964], [doi]  [abs].
  40. Douglas, NA; Manos, PS, Nyctaginaceae phylogeny, classification, and characters associated with a radiation of xerophytic genera in North America, American Journal of Botany, vol. 94 no. 5 (2007), pp. 856-872 [21636455], [doi]  [abs].
  41. Soltis, DE; Morris, AB; McLachlan, JS; Manos, PS; Soltis, PS, Comparative phylogeography of unglaciated eastern North America., Molecular Ecology, vol. 15 no. 14 (December, 2006), pp. 4261-4293 [doi]  [abs].
  42. Whitson, M; Manos, PS, Untangling Physalis (Solanaceae) from the physaloids: A two-gene phylogeny of the physalinae, Systematic Botany, vol. 30 no. 1 (January, 2005), pp. 216-230, American Society of Plant Taxonomists [doi]  [abs].
  43. McLachlan, JS; Clark, JS; Manos, PS, Molecular indicators of tree migration capacity under rapid climate change, Ecology, vol. 86 no. 8 (January, 2005), pp. 2088-2098, WILEY [doi]  [abs].
  44. Devos, N; Oh, SH; Raspé, O; Jacquemart, AL; Manos, PS, Nuclear ribosomal DNA sequence variation and evolution of spotted marsh-orchids (Dactylorhiza maculata group), Molecular Phylogenetics and Evolution, vol. 36 no. 3 (2005), pp. 568-580 [doi]  [abs].
  45. Feng, Y; Oh, SH; Manos, PS, Phylogeny and historical biogeography of the genus Platanus as inferred from nuclear and chloroplast DNA, Systematic Botany, vol. 30 no. 4 (2005), pp. 786-799, American Society of Plant Taxonomists [doi]  [abs].
  46. Miller, RE; McDonald, JA; Manos, PS, Systematics of Ipomoea subgenus Quamoclit (Convolvulaceae) based on ITS sequence data and a Bayesian phylogenetic analysis., Am J Bot, vol. 91 no. 8 (August, 2004), pp. 1208-1218 [doi]  [abs].
  47. Jaramillo, MA; Manos, PS; Zimmer, EA, Phylogenetic relationships of the perianthless Piperales: Reconstructing the evolution of floral development, International Journal of Plant Sciences, vol. 165 no. 3 (January, 2004), pp. 403-416, University of Chicago Press [doi]  [abs].
  48. Li, RQ; Chen, ZD; Lu, AM; Soltis, DE; Soltis, PS; Manos, PS, Phylogenetic relationships in Fagales based on DNA sequences from three genomes, International Journal of Plant Sciences, vol. 165 no. 2 (January, 2004), pp. 311-324, University of Chicago Press [doi]  [abs].
  49. Williams, KJ; Kress, WJ; Manos, PS, The phylogeny, evolution, and classification of the genus Globba and tribe Globbeae (Zingiberaceae): appendages do matter., American Journal of Botany, vol. 91 no. 1 (January, 2004), pp. 100-114 [21653367], [doi]  [abs].
  50. Williams, KJ; Kress, WJ; Manos, PS, Appendages do matter: the phylogeny, evolution, and classification of the genus Globba and tribe Globbeae (Zingiberaceae), American Journal of Botany, vol. 91 no. 1 (2004), pp. 100-114 [21653367], [doi]  [abs].
  51. McDowell, T; Volovsek, M; Manos, P, Biogeography of Exostema (Rubiaceae) in the Caribbean region in light of molecular phylogenetic analyses, Systematic Botany, vol. 28 no. 2 (April, 2003), pp. 431-441  [abs].
  52. Cannon, CH; Manos, PS, Phylogeography of the Southeast Asian stone oaks (Lithocarpus), Journal of Biogeography, vol. 30 no. 2 (February, 2003), pp. 211-226, WILEY [doi]  [abs].
  53. Miller, RE; Buckley, TR; Manos, PS, An examination of the monophyly of morning glory taxa using Bayesian phylogenetic inference., Systematic Biology, vol. 51 no. 5 (October, 2002), pp. 740-753 [12396588], [doi]  [abs].
  54. Miller, RE; Buckley, TR; Manos, PS, Application of Baysian phylogenetic inference to the systematics of morning glories, Systematic Biology, vol. 51 no. 5 (2002), pp. 740-753 [12396588], [doi]  [abs].
  55. Manos, PS; Miller, RE; Wilkin, P, Phylogenetic analysis of Ipomoea, Argyreia, Stictocardia, and Turbina suggests a generalized model of morphological evolution in morning glories, Systematic Botany, vol. 26 no. 3 (October, 2001), pp. 585-602  [abs].
  56. Jaramillo, MA; Manos, PS, Phylogeny and patterns of floral diversity in the genus Piper (Piperaceae)., Am J Bot, vol. 88 no. 4 (April, 2001), pp. 706-716 [11302858], [doi]  [abs].
  57. Manos, PS; Donoghue, MJ, Progress in Northern Hemisphere phytogeography: An introduction, International Journal of Plant Sciences, vol. 162 no. 6 SUPPL. (January, 2001), pp. S1-S2, University of Chicago Press [doi] .
  58. Manos, PS; Zhou, ZK; Cannon, CH, Systematics of Fagaceae: Phylogenetic tests of reproductive trait evolution, International Journal of Plant Sciences, vol. 162 no. 6 (January, 2001), pp. 1361-1379, University of Chicago Press [doi]  [abs].
  59. Krellwltz, EC; Kowallik, KV; Manos, PS, Molecular and morphological analyses of Bryopsis (Bryopsidales, Chlorophyta) from the western North Atlantic and Caribbean, Phycologia, vol. 40 no. 4 (January, 2001), pp. 330-339, International Phycological Society [doi]  [abs].
  60. Manos, PS; Stone, DE, Evolution, phylogeny, and systematics of the Juglandaceae, Annals of the Missouri Botanical Garden, vol. 88 no. 2 (January, 2001), pp. 231-269, JSTOR [doi]  [abs].
  61. Manos, PS; Stanford, AM, The historical biogeography of Fagaceae: Tracking the tertiary history of temperate and subtropical forests of the Northern Hemisphere, International Journal of Plant Sciences, vol. 162 no. 6 SUPPL. (January, 2001), pp. S77-S93, University of Chicago Press [doi]  [abs].
  62. Cannon, CH; Manos, PS, Combining and comparing morphometric shape descriptors with a molecular phylogeny: the case of fruit type evolution in Bornean Lithocarpus (Fagaceae), Systematic Biology, vol. 50 no. 6 (2001), pp. 1-21 [doi]  [abs].
  63. Manos, PS; Stanford, AM, The biogeography of Fagaceae: tracking the Tertiary history of temperate and subtropical forests of the Northern Hemisphere, International Journal of Plant Sciences, vol. 162 no. 6 SUPPL. (2001), pp. S77-S93  [abs].
  64. Cannon, CH; Manos, PS, The Bornean Lithocarpus Bl. section Synaedrys (Lindl.) Barnett (Fagaceae): Its circumscription and description of a new species, Botanical Journal of the Linnean Society, vol. 133 no. 3 (January, 2000), pp. 343-357, Oxford University Press (OUP) [doi]  [abs].
  65. Manos, PS; Doyle, JJ; Nixon, KC, Phylogeny, biogeography, and processes of molecular differentiation in Quercus subgenus Quercus (Fagaceae)., Molecular Phylogenetics and Evolution, vol. 12 no. 3 (August, 1999), pp. 333-349 [10413627], [doi]  [abs].
  66. Miller, RE; Rausher, MD; Manos, PS, Phylogenetic systematics of Ipomoea (Convolvulaceae) based on ITS and Waxy sequences, Systematic Botany, vol. 24 no. 2 (January, 1999), pp. 209-227, JSTOR [doi]  [abs].
  67. Manos, P; Steele, K, Phylogenetic analyses of "higher" Hamamelididae based on plastid sequence data., Am J Bot, vol. 84 no. 10 (October, 1997), pp. 1407 [doi]  [abs].
  68. Manos, P, Systematics of Nothofagus (Nothofagaceae) based on rDNA spacer sequences (ITS): taxonomic congruence with morphology and plastid sequences., Am J Bot, vol. 84 no. 8 (August, 1997), pp. 1137 [doi]  [abs].

Other

  1. P.S. Manos, Fagales, in Encyclopedia of Life Sciences (2001), Macmillan Reference Ltd. .