Publications of Barbara R. Shaw

Journal Articles

  1. Xu, Z; Shaw, BR, "Synthesis, Hydrolysis, and Protonation-Promoted Intramolecular Reductive Breakdown of Potential NRTIs: Stavudine α-P-Borano-γ-P-N-l-tryptophanyltriphosphates.", Molecules (Basel, Switzerland)January,, 2015, 20(10), 18808-18826 [doi] [abs].

  2. Shaw, BR, "Versatility of borane nucleic acids mimics for coding, decoding and modulating genetic information.", Nucleic acids symposium series (2004)January,, 2007(51), 117 [doi] [abs].

  3. Li, P; Shaw, BR, "Synthesis of nucleoside boranophosphoramidate prodrugs conjugated with amino acids.", The Journal of organic chemistryMarch,, 2005, 70(6), 2171-2183 (In Press.) [15760202], [doi] [abs].

  4. Dobrikov, MI; Shaw, BR, "Affinity of (alpha-P-borano)-NTP analogs to rabbit muscle pyruvate kinase.", Nucleosides, nucleotides & nucleic acidsJanuary,, 2005, 24(5-7), 983-987 (In Press.) [16248077], [doi] [abs].

  5. Wang, JX; Sergueev, DS; Shaw, BR, "The effect of a single boranophosphate substitution with defined configuration on the thermal stability and conformation of a DNA duplex.", Nucleosides, nucleotides & nucleic acidsJanuary,, 2005, 24(5-7), 951-955 (In Press.) [16248070], [doi] [abs].

  6. Wang, JX; Shaw, BR, "Synthesis of 5-(1-propynyl)-2'-deoxyuridine 5'-(alpha-P-borano)triphosphate and kinetic characterization as a substrate for mmlv reverse transcriptase.", Nucleosides, nucleotides & nucleic acidsJanuary,, 2005, 24(5-7), 947-950 (In Press.) [16248069], [doi] [abs].

  7. Wan, J; Shaw, BR, "Incorporation of ribonucleoside 5'-(alpha-P-borano)triphosphates into a 20-mer RNA by T7 RNA polymerase.", Nucleosides, nucleotides & nucleic acidsJanuary,, 2005, 24(5-7), 943-946 (In Press.) [16248068], [doi] [abs].

  8. Li, P; Shaw, BR, "Model synthesis of nucleoside boranophosphoramidate with amino acid for prodrug purpose.", Nucleosides, nucleotides & nucleic acidsJanuary,, 2005, 24(5-7), 675-678 (In Press.) [16248012], [doi] [abs].

  9. Khan, S; Dobrikov, M; Shaw, BR, ""Synthesis of 5-ethynyl-2'-deoxyuridine-5'-boranomonophosphate as a Potential Thymidylate Synthase Inhibitor"", Nucleosides, Nucleotides and Nucleic Acids, 2004, 24(222), 1047-1049 (In Press.) [16248089], [doi] [abs].

  10. Hall, AHS; Wan, J; Shaughnessy, EE; Ramsay Shaw, B; Alexander, KA, "RNA interference using boranophosphate siRNAs: structure-activity relationships.", Nucleic Acids Res, 2004, 32(20), 5991-6000 [Gateway.cgi], [doi] [abs].

  11. Li, P; Shaw, BR, ""Convenient Synthesis of Nucleoside Borane Diphosphate Analogues: Deoxy-and Ribonucleoside 5'-P -Boranodiphosphates"", J. Organic Chem., 2004, 69(2), 7051-7057.

  12. Shaw, BR; Dobrikov, M; Wang, X; Wan, J; He, K; Lin, J-L; Li, P; Rait, V; Sergueeva, ZA; Sergueev, D, "Reading, writing, and modulating genetic information with boranophosphate mimics of nucleotides, DNA, and RNA.", Annals of the New York Academy of SciencesDecember,, 2003, 1002(12-29), 12-29 [14751819], [doi] [abs].

  13. Li, P; Dobrikov, M; Liu, H; Shaw, BR, "Synthesis of acyclothymidine triphosphate and alpha-P-boranotriphosphate and their substrate properties with retroviral reverse transcriptase.", Organic lettersJuly,, 2003, 5(14), 2401-2403 [12841740], [doi] [abs].

  14. Dobrikov, MI; Sergueeva, ZA; Shaw, BR, "Incorporation of (alpha-P-borano)-2',3'-dideoxycytidine 5'-triphosphate into DNA by drug-resistant MMLV reverse transcriptase and Taq DNA polymerase.", Nucleosides, nucleotides & nucleic acidsMay,, 2003, 22(5-8), 1651-1655 [14565487], [doi] [abs].

  15. Wang, X; Dobrikov, M; Sergueev, D; Shaw, BR, "RNase H activation by stereoregular boranophosphate oligonucleotide.", Nucleosides, nucleotides & nucleic acidsMay,, 2003, 22(5-8), 1151-1153 [14565367], [doi] [abs].

  16. Li, P; Shaw, BR, "One-pot synthesis of an AZT boranophosphate conjugated with tyrosine: a potential prodrug candidate.", Nucleosides, nucleotides & nucleic acidsMay,, 2003, 22(5-8), 699-701 [14565257], [doi] [abs].

  17. Dobrikov, MI; Grady, KM; Shaw, BR, "Introduction of the alpha-P-borano-group into deoxynucleoside triphosphates increases their selectivity to HIV-1 reverse transcriptase relative to DNA polymerases.", Nucleosides, nucleotides & nucleic acidsMarch,, 2003, 22(3), 275-282 [12816386], [doi] [abs].

  18. Li, P; Shaw, BR, "Synthesis of nucleoside 3',5'-cyclic boranophosphorothioate, a new type of cyclic nucleotide.", Chemical communications (Cambridge, England)December,, 2002(23), 2890-2891 [12478798], [doi] [abs].

  19. Li, P; Shaw, BR, "Synthesis of prodrug candidates: conjugates of amino acid with nucleoside boranophosphate.", Organic lettersJune,, 2002, 4(12), 2009-2012 [12049504], [doi] [abs].

  20. Astriab-Fisher, A; Sergueev, D; Fisher, M; Shaw, BR; Juliano, RL, "Conjugates of antisense oligonucleotides with the Tat and antennapedia cell-penetrating peptides: effects on cellular uptake, binding to target sequences, and biologic actions.", Pharmaceutical researchJune,, 2002, 19(6), 744-754 [Gateway.cgi], [doi] [abs].

  21. Fisher, AA; Ye, D; Sergueev, DS; Fisher, MH; Shaw, BR; Juliano, RL, "Evaluating the specificity of antisense oligonucleotide conjugates. A DNA array analysis.", The Journal of biological chemistryJune,, 2002, 277(25), 22980-22984 [Gateway.cgi], [doi] [abs].

  22. Lato, SM; Ozerova, NDS; He, K; Sergueeva, Z; Shaw, BR; Burke, DH, "Boron-containing aptamers to ATP.", Nucleic acids researchMarch,, 2002, 30(6), 1401-1407 [Gateway.cgi], [doi] [abs].

  23. Crow, SDG; Bailly, C; Garbay Jaureguiberry, C; Roques, B; Ramsay Shaw, B; Waring, MJ, "DNA Sequence Recognition by the Antitumor Drug Ditercalinium", Biochemistry, 2002, 4(27), 8672-8682.

  24. Summers, JS; Shaw, BR, "Boranophosphates as mimics of natural phosphodiesters in DNA.", Current medicinal chemistryAugust,, 2001, 8(10), 1147-1155 [11472233], [doi] [abs].

  25. Lin, J; Shaw, BR, "Synthesis of a novel nucleic acid mimic: P-boranomethylphosphonate.", Nucleosides, nucleotides & nucleic acidsApril,, 2001, 20(4-7), 1325-1328 [11563014], [doi] [abs].

  26. Sergueeva, ZA; Sergueev, DS; Shaw, BR, "Borane-amine complexes--versatile reagents in the chemistry of nucleic acids and their analogs.", Nucleosides, nucleotides & nucleic acidsApril,, 2001, 20(4-7), 941-945 [11563150], [doi] [abs].

  27. Sergueev, DS; Sergueeva, ZA; Shaw, BR, "Synthesis of oligonucleoside boranophosphates via an H-phosphonate method without nucleobase protection.", Nucleosides, nucleotides & nucleic acidsApril,, 2001, 20(4-7), 789-795 [11563117], [doi] [abs].

  28. Lin, J; Shaw, BR, "Synthesis of new classes of boron-containing nucleotides.", Nucleosides, nucleotides & nucleic acidsApril,, 2001, 20(4-7), 587-596 [11563076], [doi] [abs].

  29. He, K; Shaw, BR, "Synthesis and separation of diastereomers of uridine 2',3'-cyclic boranophosphate.", Bioorganic & medicinal chemistry lettersMarch,, 2001, 11(5), 615-617 [11266154], [doi] [abs].

  30. Lin, J; He, K; Shaw, BR, "Novel 3',5'-cyclic nucleotide analogue: adenosine 3',5'-cyclic boranomonophosphate.", Organic lettersMarch,, 2001, 3(6), 795-797 [11263884], [doi] [abs].

  31. Summers, JS; Hoogstraten, CG; Britt, RD; Base, K; Shaw, BR; Riberio, AA; Crumbliss, AL, "Enhancement of the 1H and 31P NMR Resonances of Methylphosphite and Methylethylphosphate Anions by Selected Metal Complexes", Inorg. Chem., 2001, 40, 6547.

  32. Lin, JL; Porter, KW; Ramsay Shaw, B, "Synthesis and Properties of Novel Triphosphate Analogues: Ribonucleoside and Deoxyribonucleoside (α-P-borano, α-P-thio)triphosphates", Nucleosides, Nucleotides, and Nucleic Acids, 2001, 20(4-7), 1019-1023 [11562950], [doi] [abs].

  33. Lin, J; Shaw, BR, "Synthesis of a novel triphosphate analogue: Nucleoside α-P-borano, α-P-thiotriphosphate", Chemical CommunicationsNovember,, 2000(21), 2115-2116, Royal Society of Chemistry (RSC) [Gateway.cgi], [doi] [abs].

  34. Lin, J; Shaw, BR, "Synthesis of a boron analogue of glucose-conjugated nucleoside diphosphate: Nucleoside α-P-boranodiphosphoglucose", Tetrahedron LettersAugust,, 2000, 41(35), 6701-6704, Elsevier BV [Gateway.cgi], [doi] [abs].

  35. Astriab-Fisher, A; Sergueev, DS; Fisher, M; Shaw, BR; Juliano, RL, "Antisense inhibition of P-glycoprotein expression using peptide-oligonucleotide conjugates.", Biochemical pharmacologyJuly,, 2000, 60(1), 83-90 [Gateway.cgi], [doi] [abs].

  36. Lin, J; He, K; Shaw, BR, "Synthesis of boron-containing ADP and GDP analogues: Nucleoside 5'-(Pα- boranodiphosphates)", Helvetica Chimica ActaJanuary,, 2000, 83(7), 1392-1397, WILEY [Gateway.cgi], [doi] [abs].

  37. Sergueeva, ZA; Sergueev, DS; Ribeiro, AA; Summers, JS; Shaw, BR, "Individual isomers of dinucleoside boranophosphates as synthons for incorporation into oligonucleotides: Synthesis and configurational assignment", Helvetica Chimica ActaJanuary,, 2000, 83(7), 1377-1391, WILEY [Gateway.cgi], [doi] [abs].

  38. Ramsay Shaw, B; Sergueev, DS; Sergueeva, ZA; Porter, KW; Rait, VK; Summers, JS; He, K; Lin, JL, "Boronated Nucleic Acid Mimics: Antisense and DNA Chip Applications", Antisense and Nucleic Acid Drug Development, 2000, 10, 131-132.

  39. Sergueeva, ZA; Sergueev, DS; Ramsay Shaw, B, "Rapid and Selective Reduction of Amide Group by Borane-Amine Complexes in Acyl Protected Nucleosides", Nuclosides and Nucleotides, 2000, 19(1&2), 275-282.

  40. Lin, J; Shaw, BR, "Synthesis and properties of a novel phosphodiester analogue, nucleoside boranophosphorothioate", Chemical CommunicationsAugust,, 1999(16), 1517-1518, Royal Society of Chemistry (RSC) [Gateway.cgi], [doi] [abs].

  41. He, K; Sergueev, DS; Sergueeva, ZA; Shaw, BR, "Synthesis of diuridine 3',5'-boranophosphate: H-phosphonate approach", Tetrahedron LettersJune,, 1999, 40(25), 4601-4604, Elsevier BV [Gateway.cgi], [doi] [abs].

  42. Rait, V; Sergueev, D; Summers, J; He, K; Huang, F; Krzyzanowska, B; Shaw, BR, "Boranophosphate nucleic acids--a versatile DNA backbone.", Nucleosides & nucleotidesJune,, 1999, 18(6-7), 1379-1380 [10474223], [doi] [abs].

  43. He, K; Porter, KW; Hasan, A; Briley and, JD; Shaw, BR, "Synthesis of 5-substituted 2'-deoxycytidine 5'-(alpha-P-borano)triphosphates, their incorporationinto DNA and effects on exonuclease.", Nucleic acids researchApril,, 1999, 27(8), 1788-1794 [10101185], [doi] [abs].

  44. Sergueeva, ZA; Sergueev, DS; Shaw, BR, "Synthesis of dithymidine boranophosphates via stereospecific boronation of H-phosphonate diesters and assignment of their configuration", Tetrahedron LettersMarch,, 1999, 40(11), 2041-2044, Elsevier BV [Gateway.cgi], [doi] [abs].

  45. Rait, VK; Shaw, BR, "Boranophosphates support the RNase H cleavage of polyribonucleotides.", Antisense & nucleic acid drug developmentFebruary,, 1999, 9(1), 53-60 [10192289], [doi] [abs].

  46. K. He and B. Ramsay Shaw, "Diastereomers of 5'-O'adenosyl 3'-O-uridyl Boranophosphate [UpBH3)A]: Synthesis and Nuclease Resistant Property", Nucleic Acids Symposium Series No. 41, 1999, 99-100, Oxford University Press, Oxford, UK.

  47. Summers, JS; Roe, D; Boyle, PD; Colvin, M; Shaw, BR, "Structural Studies of a Borane-Modified Phosphate Diester Linkage: Ab Initio Calculations on the Dimethylboranophosphate Anion and the Single-Crystal X-ray Structure of Its Diisopropylammonium Salt.", Inorganic chemistryAugust,, 1998, 37(17), 4158-4159 [11670542], [doi].

  48. He, K; Hasan, A; Krzyzanowska, B; Shaw, BR, "Synthesis and Separation of Diastereomers of Ribonucleoside 5'-(alpha-P-Borano)triphosphates.", The Journal of organic chemistryAugust,, 1998, 63(17), 5769-5773 [11672174], [doi] [abs].

  49. Krzyzanowska, BK; He, K; Hasan, A; Shaw, BR, "A convenient synthesis of 2'-deoxyribonucleoside 5'-(α-P- borano)triphosphates", TetrahedronMay,, 1998, 54(20), 5119-5128, Elsevier BV [Gateway.cgi], [doi] [abs].

  50. Sergueev, DS; Ramsay Shaw, B, "H-Phosphate Approach for Solid-Phase Synthesis of Boranophosphate Oligodeoxyribonucleotides and their Characterization", J. Amer. Chem. Soc., 1998, 120(37), 9417-9427.

  51. Hasan, A; Tomasz, J; Shaw, BR, "Studies on base-boronated oligonucleotides. 2 (1). Incompatibility of DMT and cyanoborane groups during oligonucleotide synthesis.", Bioconjugate chemistryNovember,, 1997, 8(6), 813-818 [9404653], [doi] [abs].

  52. Li, H; Huang, F; Shaw, BR, "Conformational studies of dithymidine boranomonophosphate diastereoisomers.", Bioorganic & medicinal chemistryMay,, 1997, 5(5), 787-795 [9208090], [doi] [abs].

  53. Porter, KW; Briley, JD; Shaw, BR, "Direct PCR sequencing with boronated nucleotides.", Nucleic acids researchApril,, 1997, 25(8), 1611-1617 [9092670], [doi] [abs].

  54. Sergueev, D; Hasan, A; Ramaswamy, M; Shaw, BR, "Boranophosphate oligonucleotides: New synthetic approaches", Nucleosides and NucleotidesJanuary,, 1997, 16(7-9), 1533-1538, Informa UK Limited [Gateway.cgi], [doi] [abs].

  55. K. He, A. Hasan and B. Ramsay Shaw, "The Synthesis of Ribonucleoside 5'-O-(alpha-P-Boranotriphosphates), Separation of Diastereomers and Incorporation by RNA Polymerases", Nucleic Acids Symposium Series No. 36, 1997, 159, Oxford University Press.

  56. Porter, KW; Briley, JD; Ramsay Shaw, B, "One-Step PCR Sequencing with Boronated Nucleotides", Nucleic Acids Research, 1997, 25, 1611-1617.

  57. Peng, W; Shaw, BR, "Accelerated deamination of cytosine residues in UV-induced cyclobutane pyrimidine dimers leads to CC-->TT transitions.", BiochemistryAugust,, 1996, 35(31), 10172-10181 [8756482], [doi] [abs].

  58. Li, H; Hardin, C; Shaw, BR, "Hydrolysis of thymidine boranomonophosphate and stepwise deuterium substitution of the borane hydrogens. 31P and 11B NMR studies", Journal of the American Chemical SocietyJuly,, 1996, 118(28), 6606-6614, American Chemical Society (ACS) [Gateway.cgi], [doi] [abs].

  59. Gao, Q; Sood, A; Shaw, BR; Williams, LD, "2′-Deoxycytidine-N3-cyanoborane", Acta Crystallographica Section C: Crystal Structure CommunicationsJuly,, 1996, 52(7), 1823-1825, International Union of Crystallography (IUCr) [Gateway.cgi], [doi] [abs].

  60. Hasan, A; Li, H; Tomasz, J; Shaw, BR, "Base-boronated dinucleotides: synthesis and effect of N7-cyanoborane substitution on the base protons.", Nucleic acids researchJune,, 1996, 24(11), 2150-2157 [8668548], [doi] [abs].

  61. Singh, P; Zottola, M; Huang, S; Shaw, BR; Pedersen, LG, "2′-Deoxycytidine-N(3)-cyanoborane monohydrate", Acta Crystallographica Section C: Crystal Structure CommunicationsMarch,, 1996, 52(3), 693-696, International Union of Crystallography (IUCr) [Gateway.cgi], [doi] [abs].

  62. Li, H; Porter, K; Huang, F; Shaw, BR, "Boron-containing oligodeoxyribonucleotide 14mer duplexes: enzymatic synthesis and melting studies.", Nucleic acids researchNovember,, 1995, 23(21), 4495-4501 [7501475], [doi] [abs].

  63. Porter, KW; Tomasz, J; Huang, F; Sood, A; Shaw, BR, "N7-cyanoborane-2'-deoxyguanosine 5'-triphosphate is a good substrate for DNA polymerase.", BiochemistrySeptember,, 1995, 34(37), 11963-11969 [7547933], [doi] [abs].

  64. Rajendran, KG; Burnham, BS; Chen, SY; Sood, A; Spielvogel, BF; Shaw, BR; Hall, IH, "Anti-inflammatory and anti-osteoporotic activities of base-boronated nucleosides and phosphate-boronated nucleotides in rodents.", Journal of pharmaceutical sciencesOctober,, 1994, 83(10), 1391-1395 [Gateway.cgi], [doi] [abs].

  65. Chen, H; Shaw, BR, "Bisulfite induces tandem double CC-->TT mutations in double-stranded DNA. 2. Kinetics of cytosine deamination.", BiochemistryApril,, 1994, 33(14), 4121-4129 [8155629], [doi] [abs].

  66. Moyer, R; Briley, D; Johnsen, A; Stewart, U; Shaw, BR, "Echinomycin, a bis-intercalating agent, induces C-->T mutations via cytosine deamination.", Mutation researchAugust,, 1993, 288(2), 291-300 [7688090], [doi] [abs].

  67. Frederico, LA; Kunkel, TA; Shaw, BR, "Cytosine deamination in mismatched base pairs.", BiochemistryJuly,, 1993, 32(26), 6523-6530 [8329382], [doi] [abs].

  68. Chen, H; Shaw, BR, "Kinetics of bisulfite-induced cytosine deamination in single-stranded DNA.", BiochemistryApril,, 1993, 32(14), 3535-3539 [8466898], [doi] [abs].

  69. Hall, IH; Burnham, BS; Rajendran, KG; Chen, SY; Sood, A; Spielvogel, BF; Shaw, BR, "Hypolipidemic activity of boronated nucleosides and nucleotides in rodents.", Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapieJanuary,, 1993, 47(2-3), 79-87 [Gateway.cgi], [doi] [abs].

  70. Sood, A; Shaw, BR; Spielvogel, BF; Hall, ES; Chi, LK; Hall, IH, "The synthesis and anti-neoplastic activity of N2-isobutyryl-2'-deoxyguanosine-N7-cyanoborane derivatives.", Die PharmazieNovember,, 1992, 47(11), 833-838 [Gateway.cgi] [abs].

  71. Hall, IH; Hall, ES; Chi, LK; Shaw, BR; Sood, A; Spielvogel, BF, "Antineoplastic activity of boron-containing thymidine nucleosides in Tmolt3 leukemic cells.", Anticancer researchJuly,, 1992, 12(4), 1091-1097 [Gateway.cgi] [abs].

  72. MacPhail, RA; Williams, LD; Jones, DA; Shaw, BR, "Variable temperature infrared spectroscopy of cytosine-guanine base pairs: tautomerism versus polarization.", Journal of biomolecular structure & dynamicsApril,, 1992, 9(5), 881-898 [1524704], [doi] [abs].

  73. Sood, A; Spielvogel, BF; Shaw, BR; Carlton, LD; Burnham, BS; Hall, ES; Hall, IH, "The synthesis and antineoplastic activity of 2'-deoxy-nucleoside-cyanoboranes in murine and human culture cells.", Anticancer researchMarch,, 1992, 12(2), 335-343 [Gateway.cgi] [abs].

  74. Tomasz, J; Ramsay Shaw, B; Porter, K; Spielvogel, BF; Sood, A, "5'-P-Borane-Substituted Thymidine Monophosphate and Triphosphate", Angewandte Chemie, 1992, 31, 1371-1375.

  75. Spielvogel, BF; Sood, A; Shaw, BR; Hall, IH, "From boron analogues of amino acids to boronated dna: Potential new pharmaceuticals and neutron capture agents", Pure and Applied ChemistryJanuary,, 1991, 63(3), 415-418, WALTER DE GRUYTER GMBH [Gateway.cgi], [doi] [abs].

  76. Frederico, LA; Kunkel, TA; Shaw, BR, "A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy.", BiochemistryMarch,, 1990, 29(10), 2532-2537 [2185829], [doi] [abs].

  77. Sood, A; Ramsay Shaw, B; Spielvogel, BF, "Boron-Containing Nucleic Acids. 2.1 Synthesis of Oligodeoxynucleoside Boranophosphates", Journal of the American Chemical SocietyJanuary,, 1990, 112(24), 9000-9001, American Chemical Society (ACS) [Gateway.cgi], [doi].

  78. Dean Williams, L; Ramsay Shaw, B; Gupta Williams, N, "In a Model C:G Base Pair, One Amino Group Rotates and the Other Does Not", Journal of the American Chemical SocietyJanuary,, 1990, 112(2), 829-833, American Chemical Society (ACS) [Gateway.cgi], [doi] [abs].

  79. Sowers, LC; Sedwick, WD; Shaw, BR, "Hydrolysis of N3-methyl-2'-deoxycytidine: model compound for reactivity of protonated cytosine residues in DNA.", Mutation researchNovember,, 1989, 215(1), 131-138 [Gateway.cgi], [doi] [abs].

  80. Williams, NG; Williams, LD; Shaw, BR, "Dimers, trimers, and tetramers of cytosine with guanine", Journal of the American Chemical SocietyJanuary,, 1989, 111(18), 7205-7209, American Chemical Society (ACS) [Gateway.cgi], [doi] [abs].

  81. Sood, A; Spielvogel, BF; Shaw, BR, "Boron-containing nucleic acids: Synthesis of cyanoborane adducts of 2'-deoxynucleosides", Journal of the American Chemical SocietyJanuary,, 1989, 111(26), 9234-9235, American Chemical Society (ACS) [Gateway.cgi], [doi].

  82. Sowers, LC; Shaw, BR; Sedwick, WD, "Base stacking and molecular polarizability: effect of a methyl group in the 5-position of pyrimidines.", Biochemical and biophysical research communicationsOctober,, 1987, 148(2), 790-794 [3689373], [doi] [abs].

  83. Sowers, LC; Shaw, BR; Veigl, ML; Sedwick, WD, "DNA base modification: ionized base pairs and mutagenesis.", Mutation researchApril,, 1987, 177(2), 201-218 [Gateway.cgi], [doi] [abs].

  84. Williams, LD; Chawla, B; Shaw, BR, "The hydrogen bonding of cytosine with guanine: calorimetric and 1H-nmr analysis of the molecular interactions of nucleic acid bases.", BiopolymersApril,, 1987, 26(4), 591-603 [Gateway.cgi], [doi].

  85. Williams, LD; Shaw, BR, "Protonated base pairs explain the ambiguous pairing properties of O6-methylguanine.", Proceedings of the National Academy of Sciences of the United States of AmericaApril,, 1987, 84(7), 1779-1783 [Gateway.cgi], [doi] [abs].

  86. Chambers, SAM; Ramsay Shaw, B, "Histone Modifications Accompanying the Onset of Developmental Commitment in the 16-Cell Stage Sea Urchin Embryo", Dev. Biol., 1987, 124, 523-531.

  87. Chambers, SA; Cognetti, G; Shaw, BR, "Diffusible factors are responsible for differences in nuclease sensitivity among chromatins originating from different cell types.", Experimental cell researchSeptember,, 1984, 154(1), 213-223 [Gateway.cgi], [doi] [abs].

  88. SOWERS, LC; SHAW, BR; SEDWICK, WD, "IONIZED BASE-PAIRS - A PROBABLE CONSEQUENCE OF MUTAGENIC ALKYLATION OF DNA", PROCEEDINGS OF THE AMERICAN ASSOCIATION FOR CANCER RESEARCHJanuary,, 1984, 25(MAR), 20-20, AMER ASSOC CANCER RESEARCH [Gateway.cgi].

  89. Richards, RG; Shaw, BR, "Temporal Changes in Nucleosome Populations during Sea Urchin Early Development", BiochemistryJanuary,, 1984, 23(9), 2095-2102, American Chemical Society (ACS) [Gateway.cgi], [doi] [abs].

  90. Chambers, SAM; Ramsay Shaw, B, "Levels of Histone H4 Diacetylation Decrease Dramatically During Sea Urchin Embryonic Development and Correlate with Cell Doubling Rate", J. Biol. Chem., 1984, 259(21), 13458-13463 [abs].

  91. Mold, DE; Weingart, J; Assaraf, J; Lubahn, DB; Kelner, DN; Shaw, BR; McCarty, KS, "Silver staining of histones in Triton-acid-urea gels.", Analytical biochemistryNovember,, 1983, 135(1), 44-47 [Gateway.cgi], [doi] [abs].

  92. Chambers, SAM; Vaughn, JP; Ramsay Shaw, B, "The Shortest Nucleosomal Repeat Lengths during Sea Urchin Development are Found in Two-Cell Embryos", Biochemistry, 1983, 22(24), 5626-5631 [Gateway.cgi], [doi] [abs].

  93. Graham, DG; Anthony, DC; Boekelheide, K; Maschmann, NA; Richards, RG; Wolfram, JW; Shaw, BR, "Studies of the molecular pathogenesis of hexane neuropathy. II. Evidence that pyrrole derivatization of lysyl residues leads to protein crosslinking.", Toxicology and applied pharmacologyJuly,, 1982, 64(3), 415-422 [Gateway.cgi], [doi].

  94. Richards, RG; Shaw, BR, "In Situ Protamine-Release of Acid Soluble Nuclear Proteins: A versatile Sample Preparation Methods For the Electrophoretic Analysis of Nucleosomal Proteins On Acid/Urea-Based Gels", Analyt. Biochem., 1982, 121, 69-82.

  95. Cognetti, G; Shaw, BR, "Structural differences in the chromatin from compartmentalized cells of the sea urchin embryo: differential nuclease accessibility of micromere chromatin.", Nucleic acids researchNovember,, 1981, 9(21), 5609-5621 [Gateway.cgi], [doi] [abs].

  96. Shaw, BR; Cognetti, G; Sholes, WM; Richards, RG, "Shift in nucleosome populations during embryogenesis: microheterogeneity in nucleosomes during development of the sea urchin embryo.", BiochemistryAugust,, 1981, 20(17), 4971-4978 [Gateway.cgi], [doi].

  97. Schmitz, KS; Shaw, BR, "Hydrodynamic evidence in support of spacer regions in chromatin.", Science (New York, N.Y.)August,, 1977, 197(4304), 661-663 [Gateway.cgi], [doi] [abs].

  98. Schmitz, KS; Ramsay Shaw, B, "Chromatin Conformation: A Systematic Analysis of Helical Parameters from Hydrodynamic Data", Biopolymers, 1977, 16, 2619-2633.

  99. Shaw, BR; Schmitz, KS, "Quasielastic light scattering by biopolymers. Conformation of chromatin multimers.", Biochemical and biophysical research communicationsNovember,, 1976, 73(2), 224-232 [Gateway.cgi], [doi].

  100. Ramsay Shaw, B; Schmitz, KS, "Reanalysis of Histone-Induced Conformational Changes in DNA Determined by Quasielastic Light Scattering", Biopolymers, 1976, 15, 2313-2315.

  101. Shaw, BR; Herman, TM; Kovacic, RT; Beaudreau, GS; Van Holde, KE, "Analysis of the Subunit Structure in Chicken Erythrocyte Chromatin", Proc. Nat. Acad. Sci., USA, 1976, 503-507.

  102. K.E. Van Holde, B.R. Shaw, D. Lohr, T.M. Herman and R.T. Kovacik, "Subunit Structure of Chromatins", 1975, 57-72, Proc. of the 10th Annual Fed. Eur. Biochem. Soc. Conf..

  103. Shaw, BR; Schurr, JM, "The Association Reaction of Collagen Model Polypeptides (Pro-Pro-Gly)n", Biopolymers, 1975, 14(9), 1951-1985, WILEY [doi] [abs].

  104. Van Holde, KE; Saharrabuddhe, CG; Shaw, BR; van Bruggen, EFJ; Amberg, AC, "Electron Microscopy of Chromatin Subunit Particles", Biochem. Biophys. Res. Commun., 1974, 60, 1365-1370.

  105. Van Holde, KE; Saharasbuddhe, CG; Shaw, BR, "A Model for Particulate Structure in Chromatin", Nucleic Acids Res., 1974, 1, 1579-1586.

  106. Shaw, B; Corden, JL; Sahasrabuddhe, CG; Van Holde, KE, "Chromatographic Separation of Chromatin Subunits", Biochem. Biophys. Res. Commun., 1974, 61, 1193-2000.

Chapter in Book

  1. B. Shaw, M. Dobrikov, D. Sergueev, Z. Sergueev, J. Wan, X. Wang, K. He, K. Porter, P. Li, and J. Lin, ""Reading, Writing, and Modulating Genetic Information with Boranophosphate Mimics of Nucleotides, DNA, and RNA"", in Therapeutic Oligonucleotides: Antisense, RNAi, Triple Helix, DNA Decoys, and DNA Chips, edited by Y.S. Cho-Chung, A.M. Gewirtz and C.A. Stein , 2004, 1002, 12-29.

  2. Barbara Ramsay Shaw, Mikhail Dobrikov, Dmitri Sergueev, Zinaida Sergueeva, Jing Wan, Xin Wang, Kaizhang He, Kenneth Porter, Ping Li and Jin-Lai Lin, "Reading, Writing, and Modulating Genetic Information with Boranophosphate Mimics of Nucleotides, DNA and RNA", in Therapeutic Oligonucleotides: Antisense, RNAi, Triple Helix, DNA Decoys, and DNA Chips, edited by Y.S. Cho-Chung, A.M. Gewirtz, and C.A. Stein , 2003, 1002(12-29), Annals of the New York Academy of Sciences (ANNALS ONLINE, www.annalsnyas.org.).

  3. B. Ramsay Shaw, J. Wan, X. Wang, M. Dodrikov, K. He, K. Porter, J.-L. Lin, V. Rait, D. Sergueev, and Z. Sergueeva, "Reading and Writing Genetic Information with Boranophosphate (Borane Phosphate) Mimics of Nucleotides, DNA and RNA", in Chemistry of Nucleic Acid Components, Collection Symposium Series, edited by Z. Tocik and M. Hocek , 2002, 5, 169-180, Academy of Sciences of the Czech Republic, Prague.

  4. B. Ramsay Shaw, D.S. Sergueev, K. He, K. Porter, J. Summers, Z. Sergueeva and V. Rait, "Boranophosphate Backbone: A Mimic of Phosphodiesters, Phosphorothioates, and Methylphosphonates", in Methods of Enzymology 313, Part A. Antisense Technology, edited by Phillips, M.I. , 2000, 226-257, Academic Press, Orlando, FL.

  5. J. Hughes, A. Astriab, J. Yoo, S. Alahari, E. Liang, D. Sergueev, B.R. Shaw, and R.L. Juliano, "In vitro Transport & Delivery of Oligonucleotides", in Methods in Enzymology 313, Part A, Antisense Technology, edited by Phillips, M.I. , 2000, 342-348, Academic Press, Orlando, FL.

  6. Z.A. Sergueeva, D.A. Sergueev, A.A. Ribeiro, J.S. Summers, B. Ramsay Shaw, "Individual Isomers of Dinucleoside Boranophosphates as Synthons for Incorporation into Oligonucleotides. Synthesis and Configurati8onal Assignment", in Perspectives in Nucleoside and Nucleic Acid Chemistry, edited by M. Bolkan Kisakurek and Helmut Rosemeyer , 2000, 109-124, Verlag Helvetica Chimica Acta, Zurich.

  7. J.L. Lin, K. He, and B. Ramsay Shaw, "Synthesis of Boron-containing ADP and GDP Analogues: Nucleoside 5'-(alpha-P-Borano)diphosphates", in Perspectives in Nucleoside and Nucleic Acid Chemistry, edited by M. Volkan Kisakurek and Helmut Rosemeyer , 2000, 125-130, Verlag Helvetica Chimica Acta, Zurish.

  8. B.S. Burnham, S.Y. Chen, K.G. Rajendran, A. Sood, B.F. Spielvogel, B. Ramsay Shaw, and I.H. Hall, "The Synthesis of Amine-Borane Adducts of Cyclohexylamine, Toludine, and 3'-Amino-dideoxynucleosides and Evaluation of their Pharmacological Activity", in Current Topics in the Chemistry of Boron, edited by G.W. Kabalka , 1994, 189-192, The Royal Society of Chemistry, Cambridge, U.K. (Proceedings of the Eighth International Meeting on Boron Chemistry.).

  9. B.F. Spielvogel, A. Sood, B. Ramsay Shaw and I.H. Hall, "Synthesis of Boron Analogues of Biomolecules as Potential New Pharmaceuticals", in Current Topics in the Chemistry of Boron, edited by G.W. Kabalka , 1994, 193-198, The Royal Society of Chemistry, Cambridge, U.K. (Proceedings of the Eighth International Meeting on Boron Chemistry.).

  10. B. Shaw, "Induced Deamination of Cytosine: Effect of Secondary Structure and Other Factors", in The State of the Art, edited by R.H. Sarma and M.H. Sarma , 1994, 2, 367-378, Adenine Press, NY.

  11. M. Zottola, L.G. Pedersen, P. Singh and B. Ramsay Shaw, "Borohydrides as Novel Hydrogen-Bond Acceptors", in Modeling the Hydrogen Bond, Proceedings from American Chemical Society Symposia Series No. 569, Computers in Chemistry, edited by D.A. Smith , 1994, 277-285, American Chemical Society, Washington, D.C..

  12. B. Ramsay Shaw, J. Madison, A. Sood, and B.F. Spielvogel, "Oligonucleoside Boranophosphate (Borane Phosphonate) Oligomers", in Protocols for Olgonucleotides and Analogs: Synthesis and Properties, Methods in Molecular Biology Series, edited by S. Agrawal , 1993, 20, 225-243, Humana Press, Inc., Clifton, N.J..

  13. B.F. Spielvogel, A. Sood, J. Tomasz, B.R. Shaw, S. Karthikeyan, W. Powell, B. Laster, R.M. Brugger and J. Coderre, "Boronated Peptides and Nucleic Acid Compounds for NCT", in Advances in Neutron Capture Therapy, edited by R.F. Barth and A.H. Soloway , 1993, 361-365, Plenum Press, NY.

  14. B.F. Spielvogel, A. Sood, W. Powell, J. Tomasz, K. Porter and B. Ramsay Shaw, "Chemical and Enzymatic Incorporation of Boron into DNA", in Advances in Neutron Capture Therapy, edited by R.F. Barth and A.H. Soloway , 1993, 389-393, Plenum Press, NY.

  15. B.F. Spielvogel, A.Sood, B. Ramsay Shaw, I.H. Hall, R.G. Fairchild, B.H. Laster and C. Gordon, "Boron Containing Nucleic Acids", in Progress in Neutron Capture Therapy for Cancer, edited by B.J. Allen , 1992, 211-213, Plenum Press.

  16. R. Ramsay Shaw and R.G. Richards, "Preparation and Analysis of Core Particles and Nucleosomes: A Convenient Method for Studying the Protein Composition of Nucleosomes Using Protamine-Release into Triton-Acid-Urea Gels", in Chromatin Structure and Function from Nucleosome to Nuclei, NATO Advanced Study Institutes Series, edited by C. Nicolini , 1979, 21a, 125-236, Plenum Press, NY.

  17. B. Ramsay and K.S. Schmitz, "Conformation of Polynucleosomes in Low Ionic Strength Solution", in Chromatin Structure and Function from Nucleosome to Nuclei, NATO Advanced study Institutes Series, edited by C. Nicolini , 1979, 21b, 427-440, Plenum Press, NY.

  18. R. Rill, B. Ramsay Shaw and K.E. Van Holde, "Isolation and Characterization of Chromatin Subunits", in Methods in Cell Biology, Chromatin and Chromosomal Protein Research III, edited by G. Stein, J. Stein and L.J. Kleinsmith , 1978, 18, 69-103, Academic Press.

  19. K.E. Van Holde, B. Ramsay Shaw, K. Tatchell, J. Pardon, D. Worchester, J. Wooley and B. Richards, "The Structural Subunits of Chromatin", in The Molecular Biology of the Mammalian Genetic Apparatus, edited by P.O.P. Ts'o , 1977, I, 239-254, Academic Press.

  20. B.R. Shaw, T.M. Herman, R.T. Kovacic and K.E. Van Holde, "Nucleoprotein Core Particles in Chromatin Subunits: Existence of a Complex of Eight Histones and 140 Nucleotide Pairs of DNA", in Molecular Mechanisms in the Control of Gene Expression, edited by D.P. Nierlich, W.J. Rutter and C.F. Fox , 1976, 13-20, Academic Press.