Publications of Jolanta M. Miadlikowska

Papers Published

  1. U'Ren, JM; Oita, S; Lutzoni, F; Miadlikowska, J; Ball, B; Carbone, I; May, G; Zimmerman, NB; Valle, D; Trouet, V; Arnold, AE, Environmental drivers and cryptic biodiversity hotspots define endophytes in Earth's largest terrestrial biome., Current biology : CB, vol. 34 no. 5 (March, 2024), pp. 1148-1156.e7
  2. Medeiros, ID; Ibáñez, A; Arnold, AE; Hedderson, TA; Miadlikowska, J; Flakus, A; Carbone, I; LaGreca, S; Magain, N; Mazur, E; Castillo, RV; Geml, J; Kaup, M; Maggs-Kölling, G; Oita, S; Sathiya Seelan, JS; Terlova, E; Hom, EFY; Lewis, LA; Lutzoni, F, Eco-phylogenetic study of Trebouxia in southern Africa reveals interbiome connectivity and potential endemism in a green algal lichen photobiont, American Journal of Botany (January, 2024)
  3. Magain, N; Miadlikowska, J; Goffinet, B; Goward, T; Pardo-De la Hoz, CJ; Jüriado, I; Simon, A; Mercado-Díaz, JA; Barlow, T; Moncada, B; Lücking, R; Spielmann, A; Canez, L; Wang, LS; Nelson, P; Wheeler, T; Lutzoni, F; Sérusiaux, E, High species richness in the lichen genus Peltigera (Ascomycota, Lecanoromycetes): 34 species in the dolichorhizoid and scabrosoid clades of section Polydactylon, including 24 new to science, Persoonia: Molecular Phylogeny and Evolution of Fungi, vol. 51 (December, 2023), pp. 1-88
  4. Miadlikowska, J; Magain, N; Medeiros, ID; Pardo-De La Hoz, CJ; Carbone, I; Lagreca, S; Barlow, T; Myllys, L; Schmull, M; Lutzoni, F, Towards a nomenclatural clarification of the Peltigera ponojensis/monticola clade including metagenomic sequencing of type material and the introduction of P. globulata Miadl. & Magain sp. nov., Lichenologist, vol. 55 no. 5 (September, 2023), pp. 315-324
  5. Pardo-De la Hoz, CJ; Magain, N; Piatkowski, B; Cornet, L; Dal Forno, M; Carbone, I; Miadlikowska, J; Lutzoni, F, Ancient Rapid Radiation Explains Most Conflicts Among Gene Trees and Well-Supported Phylogenomic Trees of Nostocalean Cyanobacteria., Systematic biology, vol. 72 no. 3 (June, 2023), pp. 694-712
  6. McMullin, RT; Miadlikowska, J, Two rare Peltigera species new to the Canadian Arctic, P. islandica and P. lyngei, Plant and Fungal Systematics, vol. 67 no. 1 (July, 2022), pp. 17-23
  7. Franco, MEE; Wisecaver, JH; Arnold, AE; Ju, Y-M; Slot, JC; Ahrendt, S; Moore, LP; Eastman, KE; Scott, K; Konkel, Z; Mondo, SJ; Kuo, A; Hayes, RD; Haridas, S; Andreopoulos, B; Riley, R; LaButti, K; Pangilinan, J; Lipzen, A; Amirebrahimi, M; Yan, J; Adam, C; Keymanesh, K; Ng, V; Louie, K; Northen, T; Drula, E; Henrissat, B; Hsieh, H-M; Youens-Clark, K; Lutzoni, F; Miadlikowska, J; Eastwood, DC; Hamelin, RC; Grigoriev, IV; U'Ren, JM, Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes., The New phytologist, vol. 233 no. 3 (February, 2022), pp. 1317-1330
  8. Pardo-De la Hoz, CJ; Medeiros, ID; Gibert, JP; Chagnon, P-L; Magain, N; Miadlikowska, J; Lutzoni, F, Phylogenetic structure of specialization: A new approach that integrates partner availability and phylogenetic diversity to quantify biotic specialization in ecological networks., Ecology and evolution, vol. 12 no. 3 (February, 2022), pp. e8649
  9. Crous, PW; Hernández-Restrepo, M; Schumacher, RK; Cowan, DA; Maggs-Kölling, G; Marais, E; Wingfield, MJ; Yilmaz, N; Adan, OCG; Akulov, A; Duarte, EÁ; Berraf-Tebbal, A; Bulgakov, TS; Carnegie, AJ; de Beer, ZW; Decock, C; Dijksterhuis, J; Duong, TA; Eichmeier, A; Hien, LT; Houbraken, JAMP; Khanh, TN; Liem, NV; Lombard, L; Lutzoni, FM; Miadlikowska, JM; Nel, WJ; Pascoe, IG; Roets, F; Roux, J; Samson, RA; Shen, M; Spetik, M; Thangavel, R; Thanh, HM; Thao, LD; van Nieuwenhuijzen, EJ; Zhang, JQ; Zhang, Y; Zhao, LL; Groenewald, JZ, New and Interesting Fungi. 4., Fungal systematics and evolution, vol. 7 (June, 2021), pp. 255-343
  10. Oita, S; Ibáñez, A; Lutzoni, F; Miadlikowska, J; Geml, J; Lewis, LA; Hom, EFY; Carbone, I; U'Ren, JM; Arnold, AE, Climate and seasonality drive the richness and composition of tropical fungal endophytes at a landscape scale., Communications biology, vol. 4 no. 1 (March, 2021), pp. 313
  11. Stone, DF; Mccune, B; Pardo-De La Hoz, CJ; Magain, N; Miadlikowska, J, Sinuicella denisonii, a new genus and species in the Peltigeraceae from western North America, Lichenologist, vol. 53 no. 2 (March, 2021), pp. 185-192
  12. Medeiros, ID; Mazur, E; Miadlikowska, J; Flakus, A; Rodriguez-Flakus, P; Pardo-De la Hoz, CJ; Cieślak, E; Śliwa, L; Lutzoni, F, Turnover of Lecanoroid Mycobionts and Their Trebouxia Photobionts Along an Elevation Gradient in Bolivia Highlights the Role of Environment in Structuring the Lichen Symbiosis., Frontiers in microbiology, vol. 12 (January, 2021), pp. 774839
  13. McCune, B; Arup, U; Breuss, O; Di Meglio, E; Di Meglio, J; Esslinger, TL; Miadlikowska, J; Miller, AE; Rosentreter, R; Schultz, M; Sheard, J; Tønsberg, T; Walton, J, Biodiversity and ecology of lichens of Kenai Fjords National Park, Alaska, Plant and Fungal Systematics, vol. 65 no. 2 (December, 2020), pp. 586-619
  14. Miadlikowska, J; Magain, N; Buck, WR; Castillo, RV; Barlow, GT; Pardo-De la Hoz, CJ; LaGreca, S; Lutzoni, F, Peltigera hydrophila (Lecanoromycetes, Ascomycota), a new semi-aquatic cyanolichen species from Chile, Plant and Fungal Systematics, vol. 65 no. 1 (June, 2020), pp. 210-218
  15. Magain, N; Goffinet, B; Simon, A; Seelan, JSS; Medeiros, ID; Lutzoni, F; Miadlikowska, J, Peltigera serusiauxii (Lecanoromycetes, Ascomycota), a new species from Papua New Guinea and Malaysia, Plant and Fungal Systematics, vol. 65 no. 1 (June, 2020), pp. 139-146
  16. Magain, N; Spribille, T; Dimeglio, J; Nelson, PR; Miadlikowska, J; Sérusiaux, E, Phylogenetic evidence for an expanded circumscription of Gabura (Arctomiaceae), Lichenologist, vol. 52 no. 1 (January, 2020), pp. 3-15
  17. Flakus, A; Etayo, J; Miadlikowska, J; Lutzoni, F; Kukwa, M; Matura, N; Rodriguez-Flakus, P, Biodiversity assessment of ascomycetes inhabiting Lobariella lichens in Andean cloud forests led to one new family, three new genera and 13 new species of lichenicolous fungi, Plant and Fungal Systematics, vol. 64 no. 2 (December, 2019), pp. 283-344
  18. U'Ren, JM; Lutzoni, F; Miadlikowska, J; Zimmerman, NB; Carbone, I; May, G; Arnold, AE, Host availability drives distributions of fungal endophytes in the imperilled boreal realm., Nature ecology & evolution, vol. 3 no. 10 (October, 2019), pp. 1430-1437
  19. Chagnon, PL; Magain, N; Miadlikowska, J; Lutzoni, F, Species diversification and phylogenetically constrained symbiont switching generated high modularity in the lichen genus Peltigera, Journal of Ecology, vol. 107 no. 4 (July, 2019), pp. 1645-1661
  20. Carbone, I; White, JB; Miadlikowska, J; Arnold, AE; Miller, MA; Magain, N; U'Ren, JM; Lutzoni, F, T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees., Microbiology resource announcements, vol. 8 no. 29 (July, 2019), pp. e00328-e00319
  21. Lutzoni, F; Nowak, MD; Alfaro, ME; Reeb, V; Miadlikowska, J; Krug, M; Arnold, AE; Lewis, LA; Swofford, DL; Hibbett, D; Hilu, K; James, TY; Quandt, D; Magallón, S, Contemporaneous radiations of fungi and plants linked to symbiosis., Nature communications, vol. 9 no. 1 (December, 2018), pp. 5451
  22. Miadlikowska, J; Magain, N; Pardo-De La Hoz, CJ; Niu, D; Goward, T; Sérusiaux, E; Lutzoni, F, Species in section Peltidea (aphthosa group) of the genus Peltigera remain cryptic after molecular phylogenetic revision, Plant and Fungal Systematics, vol. 63 no. 2 (December, 2018), pp. 45-64
  23. Hoz, CJPDL; Magain, N; Lutzoni, F; Goward, T; Restrepo, S; Miadlikowska, J, Contrasting Symbiotic Patterns in Two Closely Related Lineages of Trimembered Lichens of the Genus Peltigera, Frontiers in Microbiology, vol. 9 no. NOV (November, 2018), FRONTIERS MEDIA SA
  24. Magain, N; Truong, C; Goward, T; Niu, D; Goffinet, B; Sérusiaux, E; Vitikainen, O; Lutzoni, F; Miadlikowska, J, Species delimitation at a global scale reveals high species richness with complex biogeography and patterns of symbiont association in peltigera section peltigera (Lichenized ascomycota: Lecanoromycetes), Taxon, vol. 67 no. 5 (October, 2018), pp. 836-870, WILEY
  25. Lu, J; Magain, N; Miadlikowska, J; Coyle, JR; Truong, C; Lutzoni, F, Bioclimatic factors at an intrabiome scale are more limiting than cyanobiont availability for the lichen-forming genus Peltigera., American journal of botany, vol. 105 no. 7 (July, 2018), pp. 1198-1211
  26. Chagnon, PL; Magain, N; Miadlikowska, J; Lutzoni, F, Strong specificity and network modularity at a very fine phylogenetic scale in the lichen genus Peltigera., Oecologia, vol. 187 no. 3 (July, 2018), pp. 767-782, Springer Nature
  27. McCune, B; Arup, U; Breuss, O; Di Meglio, ED; Di Meglio, JD; Esslinger, TL; Magain, N; Miadlikowska, J; Miller, AE; Muggia, L; Nelson, PR; Rosentreter, R; Schultz, M; Sheard, JW; Tønsberg, T; Walton, J, Biodiversity and ecology of lichens of Katmai and Lake Clark National Parks and Preserves, Alaska, Mycosphere, vol. 9 no. 4 (January, 2018), pp. 859-930
  28. Magain, N; Miadlikowska, J; Mueller, O; Gajdeczka, M; Truong, C; Salamov, AA; Dubchak, I; Grigoriev, IV; Goffinet, B; Sérusiaux, E; Lutzoni, F, Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon., Molecular phylogenetics and evolution, vol. 117 (December, 2017), pp. 10-29
  29. Heiđmarsson, S; Gueidan, C; Miadlikowska, J; Lutzoni, F, Multi-locus phylogeny supports the placement of endocarpon pulvinatum within staurothele s. Str. (lichenised ascomycetes, eurotiomycetes, verrucariaceae), Phytotaxa, vol. 306 no. 1 (May, 2017), pp. 37-48, MAGNOLIA PRESS
  30. Carbone, I; White, JB; Miadlikowska, J; Arnold, AE; Miller, MA; Kauff, F; U'Ren, JM; May, G; Lutzoni, F, T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life., Bioinformatics (Oxford, England), vol. 33 no. 8 (April, 2017), pp. 1160-1168
  31. Darnajoux, R; Zhang, X; McRose, DL; Miadlikowska, J; Lutzoni, F; Kraepiel, AML; Bellenger, J-P, Biological nitrogen fixation by alternative nitrogenases in boreal cyanolichens: importance of molybdenum availability and implications for current biological nitrogen fixation estimates., The New phytologist, vol. 213 no. 2 (January, 2017), pp. 680-689
  32. Magain, N; Miadlikowska, J; Goffinet, B; Sérusiaux, E; Lutzoni, F, Macroevolution of Specificity in Cyanolichens of the Genus Peltigera Section Polydactylon (Lecanoromycetes, Ascomycota)., Systematic biology, vol. 66 no. 1 (January, 2017), pp. 74-99
  33. Gryganskyi, A. P., Humber, R. A., Miadlikowska, J., Smith, M., Wu, S., Rubinstein, N., Voigt, K., Walter, G., Anihchenko, I. M., Vilgalys, R., Molecular Phylogeny of Entomophthoralean Fungi., Molecular Phylogenetics and Evolution, vol. 65 (2017), pp. 682-694
  34. Miadlikowska, J. and Lutzoni, F., Phylogenetic classification of peltigeralean fungi (Peltigerales, Ascomycota) based on ribosomal RNA small and large subunits., American Journal of Botany, vol. 91 (2017), pp. 449–464
  35. Hestmark, G; Lutzoni, F; Miadlikowska, J, Photobiont associations in co-occurring umbilicate lichens with contrasting modes of reproduction in coastal Norway, Lichenologist, vol. 48 no. 5 (September, 2016), pp. 545-557, Cambridge University Press (CUP)
  36. van Nieuwenhuijzen, EJ; Miadlikowska, JM; Houbraken, JAMP; Adan, OCG; Lutzoni, FM; Samson, RA, Wood staining fungi revealed taxonomic novelties in Pezizomycotina: New order Superstratomycetales and new species Cyanodermella oleoligni., Studies in mycology, vol. 85 (September, 2016), pp. 107-124
  37. Manoharan-Basil, SS; Miadlikowska, J; Goward, T; Andrésson, ÓS; Miao, VPW, Peltigera islandica, a new cyanolichen species in section Peltigera ('P. canina group'), Lichenologist, vol. 48 no. 5 (September, 2016), pp. 451-467, Cambridge University Press (CUP)
  38. Chagnon, P-L; U'Ren, JM; Miadlikowska, J; Lutzoni, F; Arnold, AE, Erratum to: Interaction type influences ecological network structure more than local abiotic conditions: evidence from endophytic and endolichenic fungi at a continental scale., Oecologia, vol. 181 no. 2 (June, 2016), pp. 633, Springer Nature
  39. U'Ren, JM; Miadlikowska, J; Zimmerman, NB; Lutzoni, F; Stajich, JE; Arnold, AE, Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota)., Molecular phylogenetics and evolution, vol. 98 (May, 2016), pp. 210-232
  40. Chagnon, P-L; U'Ren, JM; Miadlikowska, J; Lutzoni, F; Arnold, AE, Interaction type influences ecological network structure more than local abiotic conditions: evidence from endophytic and endolichenic fungi at a continental scale., Oecologia, vol. 180 no. 1 (January, 2016), pp. 181-191
  41. Magain, N., Sérusiaux, E., Zhurbenko, M. P., Lutzoni, F., Miadlikowska, J., Disentangling the Peltigera polydactylon species complex by recognizing two new taxa, P. polydactylon subsp. udeghe and P. seneca., Herzogia, vol. 29 (2016), pp. 514-528
  42. Divakar, PK; Crespo, A; Wedin, M; Leavitt, SD; Hawksworth, DL; Myllys, L; McCune, B; Randlane, T; Bjerke, JW; Ohmura, Y; Schmitt, I; Boluda, CG; Alors, D; Roca-Valiente, B; Del-Prado, R; Ruibal, C; Buaruang, K; Núñez-Zapata, J; Amo de Paz, G; Rico, VJ; Molina, MC; Elix, JA; Esslinger, TL; Tronstad, IKK; Lindgren, H; Ertz, D; Gueidan, C; Saag, L; Mark, K; Singh, G; Dal Grande, F; Parnmen, S; Beck, A; Benatti, MN; Blanchon, D; Candan, M; Clerc, P; Goward, T; Grube, M; Hodkinson, BP; Hur, J-S; Kantvilas, G; Kirika, PM; Lendemer, J; Mattsson, J-E; Messuti, MI; Miadlikowska, J; Nelsen, M; Ohlson, JI; Pérez-Ortega, S; Saag, A; Sipman, HJM; Sohrabi, M; Thell, A; Thor, G; Truong, C; Yahr, R; Upreti, DK; Cubas, P; Lumbsch, HT, Evolution of complex symbiotic relationships in a morphologically derived family of lichen-forming fungi., The New phytologist, vol. 208 no. 4 (December, 2015), pp. 1217-1226
  43. Darnajoux, R; Lutzoni, F; Miadlikowska, J; Bellenger, J-P, Determination of elemental baseline using peltigeralean lichens from Northeastern Canada (Québec): Initial data collection for long term monitoring of the impact of global climate change on boreal and subarctic area in Canada., The Science of the total environment, vol. 533 (November, 2015), pp. 1-7
  44. Chen, K-H; Miadlikowska, J; Molnár, K; Arnold, AE; U'Ren, JM; Gaya, E; Gueidan, C; Lutzoni, F, Phylogenetic analyses of eurotiomycetous endophytes reveal their close affinities to Chaetothyriales, Eurotiales, and a new order - Phaeomoniellales., Molecular phylogenetics and evolution, vol. 85 (April, 2015), pp. 117-130
  45. Gueidan, C; Hill, DJ; Miadlikowska, J; Lutzoni, F, Pezizomycotina: Lecanoromycetes (January, 2015), pp. 89-120, Springer Berlin Heidelberg
  46. Gueidan, C., Hill, D. J., Miadlikowska, J., Lutzoni, F., Chapter 4. Pezizomycotina:  Lecanoromycetes., in The Mycota, Systematics and Evolution , edited by D. J. McLaughlin and J. W. Spatafora, vol. VIIB (2015), pp. 89–120 , Springer Verlag,, Berlin, Germany
  47. Miadlikowska, J; Kauff, F; Högnabba, F; Oliver, JC; Molnár, K; Fraker, E; Gaya, E; Hafellner, J; Hofstetter, V; Gueidan, C; Otálora, MAG; Hodkinson, B; Kukwa, M; Lücking, R; Björk, C; Sipman, HJM; Burgaz, AR; Thell, A; Passo, A; Myllys, L; Goward, T; Fernández-Brime, S; Hestmark, G; Lendemer, J; Lumbsch, HT; Schmull, M; Schoch, CL; Sérusiaux, E; Maddison, DR; Arnold, AE; Lutzoni, F; Stenroos, S, A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families., Molecular phylogenetics and evolution, vol. 79 (October, 2014), pp. 132-168
  48. U'Ren, JM; Riddle, JM; Monacell, JT; Carbone, I; Miadlikowska, J; Arnold, AE, Tissue storage and primer selection influence pyrosequencing-based inferences of diversity and community composition of endolichenic and endophytic fungi., Molecular ecology resources, vol. 14 no. 5 (September, 2014), pp. 1032-1048
  49. Miadlikowska, J; Richardson, D; Magain, N; Ball, B; Anderson, F; Cameron, R; Lendemer, J; Truong, C; Lutzoni, F, Phylogenetic placement, species delimitation, and cyanobiont identity of endangered aquatic Peltigera species (lichen-forming Ascomycota, Lecanoromycetes)., American journal of botany, vol. 101 no. 7 (July, 2014), pp. 1141-1156
  50. Darnajoux, R; Constantin, J; Miadlikowska, J; Lutzoni, F; Bellenger, J-P, Is vanadium a biometal for boreal cyanolichens?, The New phytologist, vol. 202 no. 3 (May, 2014), pp. 765-771
  51. O'Brien, HE; Miadlikowska, J; Lutzoni, F, Assessing population structure and host specialization in lichenized cyanobacteria., The New phytologist, vol. 198 no. 2 (April, 2013), pp. 557-566
  52. Gazis, R; Miadlikowska, J; Lutzoni, F; Arnold, AE; Chaverri, P, Culture-based study of endophytes associated with rubber trees in Peru reveals a new class of Pezizomycotina: Xylonomycetes., Molecular phylogenetics and evolution, vol. 65 no. 1 (October, 2012), pp. 294-304
  53. Liwa, L; Miadlikowska, J; Redelings, BD; Molnar, K; Lutzoni, F, Are widespread morphospecies from the Lecanora dispersa group (lichen-forming Ascomycota) monophyletic?, Bryologist, vol. 115 no. 2 (June, 2012), pp. 265-277, American Bryological and Lichenological Society
  54. U'Ren, JM; Lutzoni, F; Miadlikowska, J; Laetsch, AD; Arnold, AE, Host and geographic structure of endophytic and endolichenic fungi at a continental scale., American journal of botany, vol. 99 no. 5 (May, 2012), pp. 898-914
  55. Schmull, M; Miadlikowska, J; Pelzer, M; Stocker-Wörgötter, E; Hofstetter, V; Fraker, E; Hodkinson, BP; Reeb, V; Kukwa, M; Lumbsch, HT; Kauff, F; Lutzoni, F, Phylogenetic affiliations of members of the heterogeneous lichen-forming fungi of the genus Lecidea sensu Zahlbruckner (Lecanoromycetes, Ascomycota)., Mycologia, vol. 103 no. 5 (September, 2011), pp. 983-1003
  56. McCune, B; Schoch, C; Root, HT; Kageyama, SA; Miadlikowska, J, Geographic, climatic, and chemical differentiation in the Hypogymnia imshaugii species complex (Lecanoromycetes, Parmeliaceae) in North America, Bryologist, vol. 114 no. 3 (September, 2011), pp. 526-544, American Bryological and Lichenological Society
  57. Miadlikowska, J; Schoch, CL; Kageyama, SA; Molnar, K; Lutzoni, F; McCune, B, Hypogymnia phylogeny, including Cavernularia, reveals biogeographic structure, Bryologist, vol. 114 no. 2 (June, 2011), pp. 392-400, American Bryological and Lichenological Society
  58. Hestmark, G; Miadlikowska, J; Kauff, F; Fraker, E; Molnar, K; Lutzoni, F, Single origin and subsequent diversification of central Andean endemic Umbilicaria species., Mycologia, vol. 103 no. 1 (January, 2011), pp. 45-56
  59. Sliwa, L., Miadlikowska, J., Redelings, B. D., Molnar, K., Lutzoni, F., Are morphospecies from the Lecanora dispersa group (lichenized Lecanoromycetes, Pezizomycotina) monophyletic?, The Bryologist, vol. 115 (2011), pp. 265–277
  60. Crespo, A; Kauff, F; Divakar, PK; del Prado, R; Pérez-Ortega, S; de Paz, GA; Ferencova, Z; Blanco, O; Roca-Valiente, B; Núñez-Zapata, J; Cubas, P; Argüello, A; Elix, JA; Esslinger, TL; Hawksworth, DL; Millanes, A; Molina, MC; Wedin, M; Ahti, T; Aptroot, A; Barreno, E; Bungartz, F; Calvelo, S; Candan, M; Cole, M; Ertz, D; Goffinet, B; Lindblom, L; Lücking, R; Lutzoni, F; Mattsson, JE; Messuti, MI; Miadlikowska, J; Piercey-Normore, M; Rico, VJ; Sipman, HJM; Schmitt, I; Spribille, T; Thell, A; Thor, G; Upreti, DK; Thorsten Lumbsch, H, Phylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence, Taxon, vol. 59 no. 6 (December, 2010), pp. 1735-1753
  61. U'Ren, J; Lutzoni, F; Miadlikowska, J; Arnold, AE, Community analysis reveals close affinities between endophytic and endolichenic fungi in mosses and lichens, Microbial Ecology, vol. 60 no. 2 (2010), pp. 340-353
  62. O'Brien, HE; Miadlikowska, J; Lutzoni, F, Assessing reproductive isolation in highly diverse communities of the lichen-forming fungal genus peltigera., Evolution; international journal of organic evolution, vol. 63 no. 8 (August, 2009), pp. 2076-2086
  63. Lutzoni, F; Miadlikowska, J, Lichens., Current biology : CB, vol. 19 no. 13 (July, 2009), pp. R502-R503
  64. Arnold, AE; Miadlikowska, J; Higgins, KL; Sarvate, SD; Gugger, P; Way, A; Hofstetter, V; Kauff, F; Lutzoni, F, A phylogenetic estimation of trophic transition networks for ascomycetous fungi: are lichens cradles of symbiotrophic fungal diversification?, Systematic biology, vol. 58 no. 3 (June, 2009), pp. 283-297
  65. Schoch, CL; Sung, G-H; López-Giráldez, F; Townsend, JP; Miadlikowska, J; Hofstetter, V; Robbertse, B; Matheny, PB; Kauff, F; Wang, Z; Gueidan, C; Andrie, RM; Trippe, K; Ciufetti, LM; Wynns, A; Fraker, E; Hodkinson, BP; Bonito, G; Groenewald, JZ; Arzanlou, M; de Hoog, GS; Crous, PW; Hewitt, D; Pfister, DH; Peterson, K; Gryzenhout, M; Wingfield, MJ; Aptroot, A; Suh, S-O; Blackwell, M; Hillis, DM; Griffith, GW; Castlebury, LA; Rossman, AY; Lumbsch, HT; Lücking, R; Büdel, B; Rauhut, A; Diederich, P; Ertz, D; Geiser, DM; Hosaka, K; Inderbitzin, P; Kohlmeyer, J; Volkmann-Kohlmeyer, B; Mostert, L; O'Donnell, K; Sipman, H; Rogers, JD; Shoemaker, RA; Sugiyama, J; Summerbell, RC; Untereiner, W; Johnston, PR; Stenroos, S; Zuccaro, A; Dyer, PS; Crittenden, PD; Cole, MS; Hansen, K; Trappe, JM; Yahr, R; Lutzoni, F; Spatafora, JW, The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits., Systematic biology, vol. 58 no. 2 (April, 2009), pp. 224-239
  66. Ertz, D; Miadlikowska, J; Lutzoni, F; Dessein, S; Raspé, O; Vigneron, N; Hofstetter, V; Diederich, P, Towards a new classification of the Arthoniales (Ascomycota) based on a three-gene phylogeny focussing on the genus Opegrapha., Mycological research., vol. 113 no. Pt 1 (January, 2009), pp. 141-152
  67. Sérusiaux, E., Goffinet, B., Miadlikowska, J., Vitikainen, O., Taxonomy, phylogeny, and biogeography of the lichen genus Peltigera in Papua New Guinea, Fungal Diversity, vol. 38 (2009), pp. 185-224
  68. Amtoft, A; Lutzoni, F; Miadlikowska, J, Dermatocarpon (Verrucariaceae) in the Ozark Highlands, North America, Bryologist, vol. 111 no. 1 (March, 2008), pp. 1-40, American Bryological and Lichenological Society
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