| Research Interests for John Harer
Research Interests: Computational Topology, Computational Geometry, Computational Biology, Algorithms
Professor Harer's primary research is in the use of geometric, combinatorial and computational techniques to study a variety of problems in shape recognition, image segmentation, protein structure, root architecture and systems biology. - Keywords:
- Algorithms, Automatic Data Processing, Biomass, Chromosome Mapping, Crosses, Genetic, Genome, Plant, Genotype, Image Processing, Computer-Assisted, Imaging, Three-Dimensional, Inbreeding, Models, Biological, Multivariate Analysis, Oryza sativa, Phenotype, Plant Roots, Principal Component Analysis, Quantitative Trait Loci, Quantitative Trait, Heritable, Recombination, Genetic, Reproducibility of Results, Software, Workflow
- Current projects:
- Systems Biology
- Computational Topology
- Statistical Topology
- Self-Healing Networks
- Network Inference
- Areas of Interest:
- Computational Biology
Computational Topology Networks Algorithms
- Recent Publications
- Motta, FC; McGoff, K; Moseley, RC; Cho, C-Y; Kelliher, CM; Smith, LM; Ortiz, MS; Leman, AR; Campione, SA; Devos, N; Chaorattanakawee, S; Uthaimongkol, N; Kuntawunginn, W; Thongpiam, C; Thamnurak, C; Arsanok, M; Wojnarski, M; Vanchayangkul, P; Boonyalai, N; Smith, PL; Spring, MD; Jongsakul, K; Chuang, I; Harer, J; Haase, SB, The parasite intraerythrocytic cycle and human circadian cycle are coupled during malaria infection.,
Proceedings of the National Academy of Sciences of the United States of America, vol. 120 no. 24
(June, 2023),
pp. e2216522120 [doi] [abs]
- Motta, FC; McGoff, KA; Deckard, A; Wolfe, CR; Bonsignori, M; Moody, MA; Cavanaugh, K; Denny, TN; Harer, J; Haase, SB, Assessment of Simulated Surveillance Testing and Quarantine in a SARS-CoV-2-Vaccinated Population of Students on a University Campus.,
JAMA Health Forum, vol. 2 no. 10
(October, 2021),
pp. e213035 [doi] [abs]
- Smith, AD; Bendich, P; Harer, J, PERSISTENT OBSTRUCTION THEORY FOR A MODEL CATEGORY OF MEASURES WITH APPLICATIONS TO DATA MERGING,
Transactions of the American Mathematical Society Series B, vol. 8 no. 1
(February, 2021),
pp. 1-38 [doi] [abs]
- Denny, TN; Andrews, L; Bonsignori, M; Cavanaugh, K; Datto, MB; Deckard, A; DeMarco, CT; DeNaeyer, N; Epling, CA; Gurley, T; Haase, SB; Hallberg, C; Harer, J; Kneifel, CL; Lee, MJ; Louzao, R; Moody, MA; Moore, Z; Polage, CR; Puglin, J; Spotts, PH; Vaughn, JA; Wolfe, CR, Implementation of a Pooled Surveillance Testing Program for Asymptomatic SARS-CoV-2 Infections on a College Campus - Duke University, Durham, North Carolina, August 2-October 11, 2020.,
MMWR Morb Mortal Wkly Rep, vol. 69 no. 46
(November, 2020),
pp. 1743-1747 [doi] [abs]
- Smith, LM; Motta, FC; Chopra, G; Moch, JK; Nerem, RR; Cummins, B; Roche, KE; Kelliher, CM; Leman, AR; Harer, J; Gedeon, T; Waters, NC; Haase, SB, An intrinsic oscillator drives the blood stage cycle of the malaria parasite Plasmodium falciparum.,
Science (New York, N.Y.), vol. 368 no. 6492
(May, 2020),
pp. 754-759 [doi] [abs]
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