Publications of Li Ma    :chronological  alphabetical  combined  bibtex listing:

Papers Published

1. Liu, R; Li, M; Ma, L. "Efficient in-situ image and video compression through probabilistic image representation." Signal Processing 215 (February, 2024). [doi]  [abs]
2. Awaya, N; Ma, L. "Hidden Markov Pólya Trees for High-Dimensional Distributions." Journal of the American Statistical Association 119.545 (January, 2024): 189-201. [doi]  [abs]
3. Gorsky, S; Chan, C; Ma, L. "Coarsened Mixtures of Hierarchical Skew Normal Kernels for Flow and Mass Cytometry Analyses." Bayesian Analysis 19.2 (January, 2024): 439-463. [doi]  [abs]
4. Liu, L; Ma, L. "Spatial properties of Bayesian unsupervised trees." Proceedings of Machine Learning Research 247 (January, 2024): 3556-3581.  [abs]
5. LeBlanc, P; Ma, L. "Microbiome subcommunity learning with logistic-tree normal latent Dirichlet allocation.." Biometrics 79.3 (September, 2023): 2321-2332. [doi]  [abs]
6. Ji, Z; Ma, L. "Controlling taxa abundance improves metatranscriptomics differential analysis.." BMC Microbiol 23.1 (March, 2023): 60. [doi]  [abs]
7. Diaz, N; Karstens, L; Ma, L; Siddiqui, N. "Aging and the Female Urinary Microbiome: Associations Between Lactobacilli, Menopause, and Vaginal Estrogen Use." INTERNATIONAL UROGYNECOLOGY JOURNAL 34 (2023): S42-S42.
8. Vaughan, MH; Zemtsov, GE; Dahl, EM; Karstens, L; Ma, L; Siddiqui, NY. "Concordance of urinary microbiota detected by 16S ribosomal RNA amplicon sequencing vs expanded quantitative urine culture.." Am J Obstet Gynecol 227.5 (November, 2022): 773-775. [doi]
9. Li, M; Ma, L. "Learning Asymmetric and Local Features in Multi-Dimensional Data Through Wavelets With Recursive Partitioning.." IEEE transactions on pattern analysis and machine intelligence 44.11 (November, 2022): 7674-7687. [doi]  [abs]
10. Gorsky, S; Ma, L. "Rejoinder: 'Multi-scale Fisher's independence test for multivariate dependence'." Biometrika 109.3 (September, 2022): 605-609. [doi]
11. Mao, J; Ma, LI. "DIRICHLET-TREE MULTINOMIAL MIXTURES FOR CLUSTERING MICROBIOME COMPOSITIONS.." The annals of applied statistics 16.3 (September, 2022): 1476-1499. [doi]  [abs]
12. Gorsky, S; Ma, L. "Multi-scale Fisher's independence test for multivariate dependence.." Biometrika 109.3 (September, 2022): 569-587. [doi]  [abs]
13. Luo, K; Zhong, J; Safi, A; Hong, LK; Tewari, AK; Song, L; Reddy, TE; Ma, L; Crawford, GE; Hartemink, AJ. "Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data.." Genome Res 32.6 (June, 2022): 1183-1198. [doi]  [abs]
14. McNary, G; Dahl, E; Wang, Z; Karstens, L; Ma, L; Siddiqui, N. "Comparing the Urinary Microbiome in Women with Urgency Urinary Incontinence and Well-Matched Controls." INTERNATIONAL UROGYNECOLOGY JOURNAL 33.SUPPL 2 (2022): S218-S219.
15. Zemtsov, GE; Vaughan, MH; Dahl, EM; Karstens, L; Ma, L; Siddiqui, NY. "Concordance of Urinary Microbiota Detected by 16S rRNA Amplicon Sequencing Versus Expanded Quantitative Urine Culture." INTERNATIONAL UROGYNECOLOGY JOURNAL 33.SUPPL 2 (2022): S219-S220.
16. Siddiqui, NY; Ma, L; Brubaker, L; Mao, J; Hoffman, C; Dahl, EM; Wang, Z; Karstens, L. "Updating Urinary Microbiome Analyses to Enhance Biologic Interpretation.." Front Cell Infect Microbiol 12 (2022): 789439. [doi]  [abs]
17. Vaughan, MH; Mao, J; Karstens, LA; Ma, L; Amundsen, CL; Schmader, KE; Siddiqui, NY. "The Urinary Microbiome in Postmenopausal Women with Recurrent Urinary Tract Infections.." J Urol 206.5 (November, 2021): 1222-1231. [doi]  [abs]
18. Giri, VK; Kegerreis, KG; Ren, Y; Bohannon, LM; Lobaugh-Jin, E; Messina, JA; Matthews, A; Mowery, YM; Sito, E; Lassiter, M; Saullo, JL; Jung, S-H; Ma, L; Greenberg, M; Andermann, TM; van den Brink, MRM; Peled, JU; Gomes, ALC; Choi, T; Gasparetto, CJ; Horwitz, ME; Long, GD; Lopez, RD; Rizzieri, DA; Sarantopoulos, S; Chao, NJ; Allen, DH; Sung, AD. "Chlorhexidine Gluconate Bathing Reduces the Incidence of Bloodstream Infections in Adults Undergoing Inpatient Hematopoietic Cell Transplantation.." Transplant Cell Ther 27.3 (March, 2021): 262.e1-262.e11. [doi]  [abs]
19. Ramalingam, S; Siamakpour-Reihani, S; Bohannan, L; Ren, Y; Sibley, A; Sheng, J; Ma, L; Nixon, AB; Lyu, J; Parker, DC; Bain, J; Muehlbauer, M; Ilkayeva, O; Kraus, VB; Huebner, JL; Spitzer, T; Brown, J; Peled, JU; van den Brink, M; Gomes, A; Choi, T; Gasparetto, C; Horwitz, M; Long, G; Lopez, R; Rizzieri, D; Sarantopoulos, S; Chao, N; Sung, AD. "A phase 2 trial of the somatostatin analog pasireotide to prevent GI toxicity and acute GVHD in allogeneic hematopoietic stem cell transplant.." PLoS One 16.6 (2021): e0252995. [doi]  [abs]
20. Mao, J; Chen, Y; Ma, L. "Bayesian Graphical Compositional Regression for Microbiome Data." Journal of the American Statistical Association 115.530 (April, 2020): 610-624. [doi]  [abs]
21. Christensen, J; Ma, L. "A Bayesian hierarchical model for related densities by using Pólya trees." Journal of the Royal Statistical Society Series B Statistical Methodology 82.1 (February, 2020): 127-153. [doi]  [abs]
22. Liu, R; Li, M; Ma, L. "CARP: Compression through Adaptive Recursive Partitioning for Multi-Dimensional Images." Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition (January, 2020): 14294-14302. [doi]  [abs]
23. Ma, L; Mao, J. "Fisher Exact Scanning for Dependency." Journal of the American Statistical Association 114.525 (January, 2019): 245-258. [doi]  [abs]
24. Soriano, J; Ma, L. "Mixture modeling on related samples by ψ-stick breaking and kernel perturbation." Bayesian Analysis 14.1 (January, 2019): 161-180. [doi]  [abs]
25. Ma, L; Soriano, J. "Analysis of Distributional Variation Through Graphical Multi-Scale Beta-Binomial Models." Journal of Computational and Graphical Statistics 27.3 (July, 2018): 529-541. [doi]  [abs]
26. Tang, Y; Ma, L; Nicolaes, DL. "A phylogenetic scan test on a dirichlet-tree multinomial model for microbiome data." Annals of Applied Statistics 12.1 (March, 2018): 1-26. [doi]  [abs]
27. Soriano, J; Ma, L. "Probabilistic multi-resolution scanning for two-sample differences." Journal of the Royal Statistical Society Series B Statistical Methodology 79.2 (March, 2017): 547-572. [doi]  [abs]
28. Ma, L; Soriano, J. "Efficient functional ANOVA through wavelet-domain Markov groves." Journal of the American Statistical Association 113.522 (2017): 802-818. [doi]  [abs]
29. Ma, L. "Recursive partitioning and multi-scale modeling on conditional densities." Electronic Journal of Statistics 11.1 (2017): 1297-1325. [doi]  [abs]
30. Ma, L. "Adaptive Shrinkage in Pólya Tree Type Models." Bayesian Analysis 12.3 (September, 2016): 779-805. [doi]
31. Ma, L. "Scalable Bayesian Model Averaging Through Local Information Propagation." Journal of the American Statistical Association 110.510 (April, 2015): 795-809. [doi]  [abs]
32. Ma, L. "Adaptive testing of conditional association through recursive mixture modeling." Journal of the American Statistical Association 108.504 (January, 2013): 1493-1505. [doi]  [abs]
33. Ma, L; Wong, WH; Owen, AB. "A sparse transmission disequilibrium test for haplotypes based on Bradley-Terry graphs.." Human heredity 73.1 (January, 2012): 52-61. [22398955], [doi]  [abs]
34. Ma, L; Wong, WH. "Coupling optional pólya trees and the two sample problem." Journal of the American Statistical Association 106.496 (December, 2011): 1553-1565. [doi]  [abs]
35. Ma, L; Stein, ML; Wang, M; Shelton, AO; Pfister, CA; Wilder, KJ. "A method for unbiased estimation of population abundance along curvy margins." Environmetrics 22.3 (May, 2011): 330-339. [doi]  [abs]
36. Ma, L; Mease, D; Russell, DM. "A four group cross-over design for measuring irreversible treatments on web search tasks." Proceedings of the Annual Hawaii International Conference on System Sciences (March, 2011). [doi]  [abs]
37. Ma, L; Assimes, TL; Asadi, NB; Iribarren, C; Quertermous, T; Wong, WH. "An "almost exhaustive" search-based sequential permutation method for detecting epistasis in disease association studies.." Genetic epidemiology 34.5 (July, 2010): 434-443. [doi]  [abs]
38. Wong, WH; Ma, L. "Optional Pólya tree and Bayesian inference." Annals of Statistics 38.3 (June, 2010): 1433-1459. [doi]  [abs]