Publications of Xiaobai Sun

Journal articles or Book chapters PUBLISHED

  1. Fu, W; Sharma, S; Abadi, E; Iliopoulos, A-S; Wang, Q; Lo, JY; Sun, X; Segars, WP; Samei, E, Corrections to "iPhantom: A Framework for Automated Creation of Individualized Computational Phantoms and its Application to CT Organ Dosimetry"., IEEE J Biomed Health Inform, vol. 26 no. 1 (January, 2022), pp. 478
  2. Fu, W; Sharma, S; Abadi, E; Iliopoulos, A-S; Wang, Q; Lo, JY; Sun, X; Segars, WP; Samei, E, iPhantom: A Framework for Automated Creation of Individualized Computational Phantoms and Its Application to CT Organ Dosimetry., IEEE J Biomed Health Inform, vol. 25 no. 8 (August, 2021), pp. 3061-3072
  3. Floros, D; Pitsianis, N; Sun, X, Fast Graphlet Transform of Sparse Graphs, 2020 IEEE High Performance Extreme Computing Conference, HPEC 2020 (September, 2020)
  4. Floros, D; Liu, T; Pitsianis, N; Sun, X, Using Graphlet Spectrograms for Temporal Pattern Analysis of Virus-Research Collaboration Networks., ArXiv (September, 2020)
  5. Pitsianis, N; Iliopoulos, AS; Floros, D; Sun, X, Spaceland embedding of sparse stochastic graphs, 2019 IEEE High Performance Extreme Computing Conference, HPEC 2019 (September, 2019)
  6. Dubey, A; Iliopoulos, A-S; Sun, X; Yin, F-F; Ren, L, Iterative inversion of deformation vector fields with feedback control., Med Phys, vol. 45 no. 7 (July, 2018), pp. 3147-3160
  7. Zhang, B; Huang, J; Pitsianis, NP; Sun, X, RECFMM: Recursive Parallelization of the Adaptive Fast Multipole Method for Coulomb and Screened Coulomb Interactions, Communications in Computational Physics, vol. 20 no. 2 (August, 2016), pp. 534-550, Global Science Press
  8. Zhang, B; Peng, B; Huang, J; Pitsianis, NP; Sun, X; Lu, B, Parallel AFMPB solver with automatic surface meshing for calculation of molecular solvation free energy, Computer Physics Communications, vol. 190 (May, 2015), pp. 173-181
  9. Hu, J; Gallo, O; Pulli, K; Sun, X, HDR Deghosting: How to deal with saturation?, Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition (November, 2013), pp. 1163-1170, IEEE, ISSN 1063-6919
  10. Iliopoulos, AS; Hu, J; Pitsianis, N; Sun, X; Gehm, M; Brady, D, Big snapshot stitching with scarce overlap, 2013 IEEE High Performance Extreme Computing Conference, HPEC 2013 (January, 2013), IEEE
  11. Zhang, B; Lu, B; Cheng, X; Huang, J; Pitsianis, NP; Sun, X; McCammon, JA, Mathematical and numerical aspects of the adaptive fast multipole Poisson-Boltzmann solver, Communications in Computational Physics, vol. 13 no. 1 (January, 2013), pp. 107-128, ISSN 1815-2406
  12. Sismanis, N; Pitsianis, N; Sun, X, Parallel search of k-nearest neighbors with synchronous operations, 2012 IEEE Conference on High Performance Extreme Computing, HPEC 2012 (December, 2012), IEEE
  13. Zhang, Y; Liu, J; Kultursay, E; Kandemir, M; Pitsianis, N; Sun, X, Automatic parallel code generation for NuFFT data translation on multicores, Journal of Circuits, Systems and Computers, vol. 21 no. 2 (April, 2012), pp. 1240004-1240004, World Scientific Pub Co Pte Lt, ISSN 0218-1266
  14. Zhang, B; Huang, J; Pitsianis, NP; Sun, X, A Fourier-series-based kernel-independent fast multipole method, Journal of Computational Physics, vol. 230 no. 15 (January, 2011), pp. 5807-5821, Elsevier BV, ISSN 0021-9991
  15. Zhang, B; Huang, J; Pitsianis, NP; Sun, X, Revision of FMM–Yukawa: An adaptive fast multipole method for screened Coulomb interactions, Computer Physics Communications, vol. 181 no. 12 (December, 2010), pp. 2206-2207, Elsevier BV
  16. Zhang, Y; Liu, J; Kultursay, E; Kandemir, M; Pitsianis, N; Sun, X, Scalable parallelization strategies to accelerate NuFFT data translation on multicores, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 6272 LNCS no. PART 2 (November, 2010), pp. 125-136, Springer Berlin Heidelberg, ISSN 0302-9743
  17. Zhang, Y; Deng, L; Yedlapalli, P; Muralidhara, SP; Zhao, H; Kandemir, M; Chakrabarti, C; Pitsianis, N; Sun, X, A special-purpose compiler for look-up table and code generation for function evaluation, Proceedings -Design, Automation and Test in Europe, DATE (June, 2010), pp. 1130-1135, ISSN 1530-1591
  18. Zhang, Y; Kandemir, M; Pitsianis, NP; Sun, X, Exploring parallelization strategies for NUFFT data translation, Embedded Systems Week 2009 - Proceedings of the 7th ACM International Conference on Embedded Software, EMSOFT '09 (December, 2009), pp. 187-196, ACM Press
  19. Kim, JS; Deng, L; Mangalagiri, P; Irick, K; Sobti, K; Kandemir, M; Narayanan, V; Chakrabarti, C; Pitsianis, N; Sun, X, An automated framework for accelerating numerical algorithms on reconfigurable platforms using algorithmic/architectural optimization, IEEE Transactions on Computers, vol. 58 no. 12 (December, 2009), pp. 1654-1667, Institute of Electrical and Electronics Engineers (IEEE), ISSN 0018-9340
  20. Papamakarios, G; Rizos, G; Pitsianis, NP; Sun, X, Fast computation of local correlation coefficients on graphics processing units, Proceedings of SPIE - The International Society for Optical Engineering, vol. 7444 (November, 2009), SPIE, ISSN 0277-786X
  21. Deng, L; Chakrabarti, C; Pitsianis, N; Sun, X, Automated optimization of look-up table implementation for function evaluation on FPGAs, Proceedings of SPIE - The International Society for Optical Engineering, vol. 7444 (November, 2009), SPIE, ISSN 0277-786X
  22. Portnoy, A; Pitsianis, N; Sun, X; Brady, D; Gibbons, R; Silver, A; Te Kolste, R; Chen, C; Dillon, T; Prather, D, Design and characterization of thin multiple aperture infrared cameras., Applied optics, vol. 48 no. 11 (April, 2009), pp. 2115-2126
  23. Wagadarikar, AA; Pitsianis, NP; Sun, X; Brady, DJ, Video rate spectral imaging using a coded aperture snapshot spectral imager., Optics express, vol. 17 no. 8 (April, 2009), pp. 6368-6388
  24. Sun, X; Pitsianis, NP; Bientinesi, P, Fast computation of local correlation coefficients, Proceedings of SPIE - The International Society for Optical Engineering, vol. 7074 (December, 2008), SPIE, ISSN 0277-786X
  25. Sun, X; Pitsianis, NP, Solving non-negative linear inverse problems with the NeAREst method, Proceedings of SPIE - The International Society for Optical Engineering, vol. 7074 (December, 2008), SPIE, ISSN 0277-786X
  26. Debroy, N; Pitsianis, NP; Sun, X, Accelerating nonuniform fast Fourier transform via reduction in memory access latency, Proceedings of SPIE - The International Society for Optical Engineering, vol. 7074 (December, 2008), SPIE, ISSN 0277-786X
  27. Wagadarikar, AA; Pitsianis, NP; Sun, X; Brady, DJ, Spectral image estimation for coded aperture snapshot spectral imagers, Proceedings of SPIE - The International Society for Optical Engineering, vol. 7076 (December, 2008), SPIE, ISSN 0277-786X
  28. Portnoy, AD; Pitsianis, NP; Sun, X; Brady, DJ, Multichannel sampling schemes for optical imaging systems., Applied optics, vol. 47 no. 10 (April, 2008), pp. B76-B85, ISSN 0003-6935
  29. Bao, Y; Bozkur, IN; Dayar, T; Sun, X; Trivedi, KS, Decompositional analysis of Kronecker structured Markov chains, Electronic Transactions on Numerical Analysis, vol. 31 (January, 2008), pp. 271-294, ISSN 1068-9613
  30. Sobti, K; Deng, L; Chakraharti, C; Pitsianis, N; Sun, X; Kim, J; Mangalagiri, P; Irick, K; Kandemir, M; Narayanan, V, Efficient function evaluations with lookup tables for structured matrix operations, IEEE Workshop on Signal Processing Systems, SiPS: Design and Implementation (December, 2007), pp. 463-468, IEEE, ISSN 1520-6130
  31. Kim, JS; Mangalagiri, P; Irick, K; Kandemir, M; Narayanan, V; Sobti, K; Deng, L; Chakrabarti, C; Pitsianis, N; Sun, X, TANOR: A tool for accelerating N-body simulations on reconfigurable platform, Proceedings - 2007 International Conference on Field Programmable Logic and Applications, FPL (December, 2007), pp. 68-73, IEEE
  32. Shankar, M; Pitsianis, N; Sun, X; Brady, D, Compressive measurements for video, Optics InfoBase Conference Papers (January, 2007)
  33. Pitsianis, NP; Brady, DJ; Sun, X, The MONTAGE least gradient image reconstruction, Optics InfoBase Conference Papers (January, 2007)
  34. Pitsianis, NP; Brady, DJ; Portnoy, A; Sun, X; Suleski, T; Fiddy, MA; Feldman, MR; Tekolste, RD, Compressive imaging sensors, Proceedings of SPIE - The International Society for Optical Engineering, vol. 6232 (September, 2006), SPIE, ISSN 0277-786X
  35. Chen, G; Xue, L; Kim, J; Sobti, K; Deng, L; Sun, X; Pitsianis, N; Chakrabarti, C; Kandemir, M; Vijaykrishnan, N, Geometric tiling for reducing power consumption in structured matrix operations, 2006 IEEE International Systems-on-Chip Conference, SOC (January, 2006), pp. 113-114, IEEE
  36. Brady, DJ; Gehm, ME; Pitsianis, N; Sun, X, Compressive sampling strategies for integrated microspectrometers, Proceedings of SPIE - The International Society for Optical Engineering, vol. 6232 (2006), pp. 62320, SPIE, ISSN 0277-786X
  37. Pitsianis, NP; Brady, DJ; Sun, X, Sensor-layer image compression based on the quantized cosine transform, Proceedings of SPIE - The International Society for Optical Engineering, vol. 5817 (November, 2005), pp. 250-257, ISSN 0277-786X
  38. Bao, Y; Sun, X; Trivedi, KS, A workload-based analysis of software aging, and rejuvenation, IEEE Transactions on Reliability, vol. 54 no. 3 (September, 2005), pp. 541-548, Institute of Electrical and Electronics Engineers (IEEE), ISSN 0018-9529
  39. Pitsianis, NP; Brady, DJ; Sun, X, The quantized cosine transform for sensor-layer image compression, Optics InfoBase Conference Papers (January, 2005)
  40. Pitsianis, NP; Brady, DJ; Sun, X, The quantized cosine transform for sensor-layer image compression, Optics InfoBase Conference Papers (January, 2005)
  41. Sun, X; Quintana-Ortí, ES, Spectral division methods for block generalized Schur decompositions, Mathematics of Computation, vol. 73 no. 248 (October, 2004), pp. 1827-1847, American Mathematical Society (AMS)
  42. Brady, DJ; Pitsianis, NP; Sun, X, Reference structure tomography., Journal of the Optical Society of America. A, Optics, image science, and vision, vol. 21 no. 7 (July, 2004), pp. 1140-1147, ISSN 1084-7529
  43. Bao, Y; Sun, X; Trivedi, KS, Adaptive Software Rejuvenation: Degradation Model and Rejuvenation Scheme, Proceedings of the International Conference on Dependable Systems and Networks (December, 2003), pp. 241-248, IEEE
  44. Sun, X; Quintana-Ortí, ES, The generalized Newton iteration for the matrix sign function, SIAM Journal on Scientific Computing, vol. 24 no. 2 (January, 2003), pp. 669-683, Society for Industrial & Applied Mathematics (SIAM), ISSN 1064-8275
  45. Sun, X; Bao, Y, A Kronecker product representation of the fast Gauss transform, SIAM Journal on Matrix Analysis and Applications, vol. 24 no. 3 (January, 2003), pp. 768-786, Society for Industrial & Applied Mathematics (SIAM)
  46. Pauca, VP; Rodriguez, AF; Sun, X; Trivedi, KS, A methodology towards automatic implementation of N-body algorithms, Applied Numerical Mathematics, vol. 40 no. 1-2 (January, 2002), pp. 3-21, Elsevier BV, ISSN 0168-9274
  47. Jin, W; Sun, X; Chase, JS, FASTSLIM: Prefetch-Safe Trace Reduction for I/O Cache Simulation, ACM Transactions on Modeling and Computer Simulation, vol. 11 no. 2 (April, 2001), pp. 125-160, Association for Computing Machinery (ACM), ISSN 1049-3301
  48. Quintana, ES; Quintana, G; Sun, X; Van de Geijn, R, A note on parallel matrix inversion, SIAM Journal on Scientific Computing, vol. 22 no. 5 (January, 2001), pp. 1762-1771, Society for Industrial & Applied Mathematics (SIAM), ISSN 1064-8275
  49. Sun, X; Pitsianis, NP, A matrix version of the fast multipole method, SIAM Review, vol. 43 no. 2 (January, 2001), pp. 289-300, Society for Industrial & Applied Mathematics (SIAM)
  50. Huss-Lederman, S; Quintana-ORTÍ, ES; Sun, X; Wu, YJY, Parallel spectral division using the matrix sign function for the generalized eigenproblem, International Journal of High Speed Computing, vol. 11 no. 1 (December, 2000), pp. 1-14, World Scientific Pub Co Pte Lt, ISSN 0129-0533
  51. Chu, MT; Pauca, VP; Plemmons, RJ; Sun, X, A mathematical framework for the linear reconstructor problem in adaptive optics, Linear Algebra and Its Applications, vol. 316 no. 1-3 (September, 2000), pp. 113-135, Elsevier BV
  52. Pauca, VP; Ellerbroek, BL; Plemmons, RJ; Sun, X, Structured matrix representations of two-parameter Hankel transforms in adaptive optics, Linear Algebra and Its Applications, vol. 316 no. 1-3 (September, 2000), pp. 29-43, Elsevier BV
  53. Ramakrishna, V; Ober, R; Sun, X; Steuernagel, O; Botina, J; Rabitz, H, Explicit generation of unitary transformations in a single atom or molecule, Physical Review A - Atomic, Molecular, and Optical Physics, vol. 61 no. 3 (January, 2000), pp. 321061-321066
  54. Bischof, CH; Lang, B; Xiaobai, S, Algorithm 807: The SBR toolbox - Software for successive band reduction, ACM Transactions on Mathematical Software, vol. 26 no. 4 (January, 2000), pp. 602-616, Association for Computing Machinery (ACM)
  55. Bischof, CH; Lang, B; Sun, X, A framework for symmetric band reduction, ACM Transactions on Mathematical Software, vol. 26 no. 4 (January, 2000), pp. 581-601, Association for Computing Machinery (ACM)
  56. Pauca, VP; Ellerbroek, BL; Pitsianis, NP; Plemmons, RJ; Sun, X, Performance modeling of adaptive-optics imaging systems using fast Hankel transforms, Proceedings of SPIE - The International Society for Optical Engineering, vol. 3461 (December, 1998), pp. 339-347, SPIE
  57. Quintana-Ortí, G; Sun, X; Bischof, CH, A BLAS-3 version of the QR factorization with column pivoting, SIAM Journal on Scientific Computing, vol. 19 no. 5 (January, 1998), pp. 1486-1494, Society for Industrial & Applied Mathematics (SIAM), ISSN 1064-8275
  58. Bischof, CH; Sun, X, On tridiagonalizing and diagonalizing symmetric matrices with repeated eigenvalues, SIAM Journal on Matrix Analysis and Applications, vol. 17 no. 4 (January, 1996), pp. 869-885, Society for Industrial & Applied Mathematics (SIAM)
  59. Bischof, C; Sun, X; Lang, B, Parallel tridiagonalization through two-step band reduction, Proceedings of the Scalable High-Performance Computing Conference (December, 1994), pp. 23-27
  60. Bischof, C; Huss-Lederman, S; Sun, X; Tsao, A; Turnbull, T, Parallel performance of a symmetric eigensolver based on the invariant subspace decomposition approach, Proceedings of the Scalable High-Performance Computing Conference (December, 1994), pp. 32-39

Papers Published

  1. Pitsianis, N; Floros, D; Liu, T; Sun, X, Parallel Clustering with Resolution Variation, 2023 IEEE High Performance Extreme Computing Conference, HPEC 2023 (January, 2023), ISBN 9798350308600
  2. Floros, D; Liu, T; Pitsianis, N; Sun, X, Fast Graph Algorithms for Superpixel Segmentation, 2022 IEEE High Performance Extreme Computing Conference, HPEC 2022 (January, 2022), ISBN 9781665497862
  3. Liu, T; Floros, D; Pitsianis, N; Sun, X, Digraph Clustering by the BlueRed Method, 2021 IEEE High Performance Extreme Computing Conference, HPEC 2021 (January, 2021), ISBN 9781665423694
  4. Campton, C; Sun, X, Auxiliary maximum likelihood estimation for noisy point cloud registration, 2019 IEEE High Performance Extreme Computing Conference, HPEC 2019 (September, 2019), ISBN 9781728150208
  5. Floros, D; Liu, T; Pitsianis, N; Sun, X, Sparse Dual of the Density Peaks Algorithm for Cluster Analysis of High-dimensional Data, 2018 IEEE High Performance Extreme Computing Conference, HPEC 2018 (November, 2018), ISBN 9781538659892
  6. Liu, T; Qian, Y; Chen, X; Sun, X, Damping Effect on PageRank Distribution, 2018 IEEE High Performance Extreme Computing Conference, HPEC 2018 (November, 2018), ISBN 9781538659892
  7. Xian, Y; Sun, X; Liao, W; Zhang, Y; Nowacek, D; Nolte, L, Intrinsic structure study of whale vocalizations, OCEANS 2016 MTS/IEEE Monterey, OCE 2016 (November, 2016), IEEE, ISBN 9781509015375
  8. Nathan, R; Anthonio, B; Lu, SL; Naeimi, H; Sorin, DJ; Sun, X, Recycled Error Bits: Energy-Efficient Architectural Support for Floating Point Accuracy, International Conference for High Performance Computing, Networking, Storage and Analysis, SC, vol. 2015-January no. January (January, 2014), pp. 117-127, IEEE, ISSN 2167-4329
  9. Shankar, M; Pitsianis, N; Sun, X; Brady, D, Compressive measurements for video, Optics InfoBase Conference Papers (January, 2007), ISBN 9781557528469
  10. Pitsianis, NP; Brady, DJ; Sun, X, The MONTAGE least gradient image reconstruction, Optics InfoBase Conference Papers (January, 2007), ISBN 9781557528384
  11. Pitsianis, NP; Brady, DJ; Sun, X, The quantized cosine transform for sensor-layer image compression, Optics InfoBase Conference Papers (January, 2005), ISBN 9781557527899
  12. Bischof, C; Huss-Lederman, S; Sun, X; Tsao, A, The PRISM project: Infrastructure and algorithms for parallel eigensolvers, Proceedings of Scalable Parallel Libraries Conference, SPLC 1993 (January, 1993), pp. 123-131, ISBN 9780818649806