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Publications of Joshua Socolar    :chronological  alphabetical  by type  bibtex listing:

  1. Y Yang, L Fu, C Marcoux, JE Socolar, P Charbonneau and BB Yellen, Phase transformations in binary colloidal monolayers., Soft matter, vol. 11 no. 12 (March, 2015), pp. 2404-2415, ISSN 1744-683X [doi]  [abs]
  2. Y. Yang, L. Fu, C. Marcoux, P. Charbonneau, J.E.S. Socolar, B. B. Yellen, Phase transformations in binary colloidal monolayers, Soft Matter (February, 2015) [doi]  [abs]
  3. M Sun, X Cheng and JE Socolar, Regulatory logic and pattern formation in the early sea urchin embryo., Journal of theoretical biology, vol. 363 (December, 2014), pp. 80-92, ISSN 0022-5193 [doi]  [abs]
  4. Y. Yang, L. Fu, C. Marcoux, J. E. S. Socolar, P. Charbonneau, B. B. Yellen, Martensitic transformations in binary colloidal monolayers, PNAS (October, 2014)
  5. C Marcoux, TW Byington, Z Qian, P Charbonneau and JE Socolar, Emergence of limit-periodic order in tiling models., Physical review. E, Statistical, nonlinear, and soft matter physics, vol. 90 no. 1 (August, 2014), pp. 012136, American Physical Society, ISSN 1539-3755 [PhysRevE.90.012136], [doi]  [abs]
  6. X Cheng, DC Lyons, JE Socolar and DR McClay, Delayed transition to new cell fates during cellular reprogramming., Developmental biology, vol. 391 no. 2 (April, 2014), pp. 147-157, ISSN 0012-1606 [S001216061400222X], [doi]  [abs]
  7. M Sun, X Cheng and JE Socolar, Causal structure of oscillations in gene regulatory networks: Boolean analysis of ordinary differential equation attractors., Chaos, vol. 23 no. 2 (June, 2013), pp. 025104 [23822502], [doi]  [abs]
  8. M Sun and JES Socolar, Comparison of autonomous Boolean network dynamics and ODE models, Chaos (January, 2013)
  9. T Byington and JES Socolar, Hierarchical freezing of limit-periodic structure, Physical Review E (January, 2013)
  10. X Cheng, M Sun and JES Socolar, Autonomous Boolean modelling of developmental gene regulatory networks, J. Royal Soc. Interface, vol. 10 no. 78 (January, 2013), pp. 20120574 [23034351], [doi]  [abs]
  11. JES Socolar and PJ Steinhardt, Quasicrystals II: Unit Cell Structures, Phys. Rev. B, vol. 34 (1986), pp. 617-647 [doi]
  12. JES Socolar, Phason Strain in Quasicrystals, Journal de Physique, vol. C3 (1986), pp. 217-227
  13. GY Onoda, PJ Steinhardt, DP DiVincenzo and JES Socolar, Reply to Comment on PRL, Phys. Rev. Lett., vol. 62 no. 10 (1989), pp. 1210 [10039608], [doi]
  14. JES Socolar, Theory of Packings of Identical Hard Disks Generated by Ballistic Deposition, Europhys. Lett., vol. 18 (1992), pp. 39
  15. J Krug, JES Socolar and G Grinstein, Surface Fluctuations and Criticality in a Class of 1D Sandpile Models, Phys. Rev. A (RC), vol. 46 no. 8 (1992), pp. 4479, ISSN 1050-2947 [9908766]
  16. I Harrington and JES Socolar, Design and robustness of delayed feedback controllers for discrete systems, Phys. Rev. E, vol. 69 no. 5 1 (2004), pp. 56207, ISSN 1539-3755  [abs]
  17. O Beck, A Amann, E Schoell and JES Socolar, `Comparison of time-delayed feedback schemes for spatio-temporal control of chaos, Phys. Rev. E, vol. 66 no. 1 (2002), pp. 016213, ISSN 1539-3755 [doi]  [abs]
  18. DJ Gauthier and JES Socolar, Comment on Dynamic Control of Cardiac Alternans, Physical Review Letters, vol. 79 (January, 2013), pp. 4938
  19. X Cheng, M Sun and JE Socolar, Autonomous Boolean modelling of developmental gene regulatory networks., J R Soc Interface, vol. 10 no. 78 (November, 2012), pp. 20120574 [23034351], [doi]  [abs]
  20. X Gong and JE Socolar, Quantifying the complexity of random Boolean networks., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 85 no. 6 Pt 2 (2012), pp. 066107 [23005162], [doi]  [abs]
  21. KS Khalil, A Sagastegui, Y Li, MA Tahir, JE Socolar, BJ Wiley and BB Yellen, Binary colloidal structures assembled through Ising interactions., Nat Commun, vol. 3 (April, 2012), pp. 794 [22531179], [doi]  [abs]
  22. TW Byington and JE Socolar, Hierarchical freezing in a lattice model., Phys Rev Lett, vol. 108 no. 4 (January, 2012), pp. 045701 [22400863], [doi]  [abs]
  23. R Durrett, JP Gleeson, AL Lloyd, PJ Mucha, F Shi, D Sivakoff, JE Socolar and C Varghese, Graph fission in an evolving voter model., Proc Natl Acad Sci U S A, vol. 109 no. 10 (2012), pp. 3682-3687 [22355142], [doi]  [abs]
  24. JES Socolar and JM Taylor, Forcing Nonperiodicity with a Single Tile, Mathematical Intelligencer, vol. 34 no. 1 (Spring, 2012), pp. 18-28, ISSN 0343-6993 [doi]  [abs]
  25. JE Socolar, Local action, global impact: forcing nonperiodicity with a single structural unit., Chaos, vol. 21 no. 4 (January, 2012), pp. 041106 [22225336], [doi]  [abs]
  26. JES Socolar and JM Taylor, An aperiodic hexagonal tile, Journal of Combinatorial Theory. Series A, vol. 118 no. 8 (November, 2011), pp. 2207-2231, Academic Press, Inc., Orlando, FL, USA, ISSN 0097-3165 [doi]  [abs]
  27. V Sevim, X Gong and JE Socolar, Reliability of transcriptional cycles and the yeast cell-cycle oscillator., PLoS Comput Biol, vol. 6 no. 7 (July, 2010), pp. e1000842, ISSN 1553-7358 [20628620], [doi]  [abs]
  28. HL Cavalcante, DJ Gauthier, JE Socolar and R Zhang, On the origin of chaos in autonomous Boolean networks., Philos Trans A Math Phys Eng Sci, vol. 368 no. 1911 (January, 2010), pp. 495-513, ISSN 1364-503X [20008414], [doi]  [abs]
  29. R Zhang, HL de S Cavalcante, Z Gao, DJ Gauthier, JE Socolar, MM Adams and DP Lathrop, Boolean chaos., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 80 no. 4 Pt 2 (November, 2009), pp. 045202 [19905381], [doi]  [abs]
  30. J Norrell and JE Socolar, Boolean modeling of collective effects in complex networks., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 79 no. 6 (2009), pp. nihpa131303 [19649269], [doi]  [abs]
  31. DA Orlando, CY Lin, A Bernard, JY Wang, JE Socolar, ES Iversen, AJ Hartemink and SB Haase, Global control of cell-cycle transcription by coupled CDK and network oscillators., Nature, vol. 453 no. 7197 (June, 2008), pp. 944-947 [18463633], [doi]  [abs]
  32. BP Tighe and JE Socolar, Nonlinear elastic stress response in granular packings., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 77 no. 3 Pt 1 (June, 2008), pp. 031303, ISSN 1539-3755 [18517366], [doi]  [abs]
  33. JES Socolar, Time-Delay Control for Discrete Maps (May, 2008), pp. 29-45 [doi]  [abs]
  34. D.A. Orlando, C.Y. Lin, A. Bernard, J.Y. Wang, J.E.S. Socolar, E.S. Iversen, A.J. Hartemink, and S.B. Haase, Global control of cell-cycle transcription by coupled CDK and network oscillators, Nature (May 7, 2008) [doi]
  35. AS Ribeiro, SA Kauffman, J Lloyd-Price, B Samuelsson and JE Socolar, Mutual information in random Boolean models of regulatory networks., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 77 no. 1 Pt 1 (2008), pp. 011901, ISSN 1539-3755 [18351870], [doi]  [abs]
  36. J.E.S. Socolar, Time-delay control for discrete maps, in Handbook of Chaos Control, edited by E. Scholl and H. G. Schuster (December, 2007), Wiley-VCH Verlag GmbH [html]  [abs]
  37. J Norrell, B Samuelsson and JE Socolar, Attractors in continuous and Boolean networks., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 76 no. 4 Pt 2 (November, 2007), pp. 046122, ISSN 1539-3755 [17995075], [doi]  [abs]
  38. CM Berger, JW Cain, JE Socolar and DJ Gauthier, Control of electrical alternans in simulations of paced myocardium using extended time-delay autosynchronization., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 76 no. 4 Pt 1 (November, 2007), pp. 041917, ISSN 1539-3755 (Selected for Virtual Journal of Biological Physics Research.) [17995036], [doi]  [abs]
  39. A Shreim, P Grassberger, W Nadler, B Samuelsson, JE Socolar and M Paczuski, Network analysis of the state space of discrete dynamical systems., Phys Rev Lett, vol. 98 no. 19 (August, 2007), pp. 198701, ISSN 0031-9007 [17677672], [doi]  [abs]
  40. JES Socolar, Erratum: The hexagonal parquet tiling, k-isohedral monotiles with arbitrarily large k (The Mathematical Intelligencer 29:2 (33-38)), Mathematical Intelligencer, vol. 29 no. 4 (2007), pp. 6-, ISSN 0343-6993 [doi]
  41. JES Socolar, The hexagonal parquet tiling k-isohedral monotiles with arbitrarily large k, Mathematical Intelligencer, vol. 29 no. 2 (2007), pp. 33-38, ISSN 0343-6993 [pdf], [doi]  [abs] [author's comments]
  42. DV Foster, SA Kauffman and JE Socolar, Network growth models and genetic regulatory networks., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 73 no. 3 Pt 1 (2006), pp. 031912, ISSN 1539-3755 [16605563], [doi]  [abs]
  43. J.E.S. Socolar, Nonlinear Dynamical Systems, in Complex Systems Science and Biomedicine, edited by Deisboeck and Kresh (February, 2006), Kluwer  [author's comments]
  44. B Samuelsson and JES Socolar, Exhaustive percolation on random networks, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 74 no. 3 (2006), pp. 031912, ISSN 1539-3755 [e036113], [doi]  [abs]
  45. BP Tighe, JE Socolar, DG Schaeffer, WG Mitchener and ML Huber, Force distributions in a triangular lattice of rigid bars., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 72 no. 3 Pt 1 (October, 2005), pp. 031306, ISSN 1539-3755 [16241425], [doi]  [abs]
  46. S Dealy, S Kauffman and J Socolar, Modeling pathways of differentiation in genetic regulatory networks with Boolean networks, Complexity, vol. 11 no. 1 (2005), pp. 52-60, ISSN 1076-2787 [doi]  [abs]
  47. I Harrington and JES Socolar, Design and robustness of delayed feedback controllers for discrete systems, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 69 no. 5 1 (2004), pp. 056207-1-056207-8, ISSN 1539-3755  [abs]
  48. JES Socolar, Discrete models of force chain networks, Discrete and Continuous Dynamical Systems - Series B, vol. 3 no. 4 (November, 2003), pp. 601-618, ISSN 1531-3492 [0212162]  [abs]
  49. P Hövel and JE Socolar, Stability domains for time-delay feedback control with latency., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 68 no. 3 Pt 2 (2003), pp. 036206, ISSN 1539-3755 [14524867], [doi]  [abs]
  50. M Otto, JP Bouchaud, P Claudin and JE Socolar, Anisotropy in granular media: classical elasticity and directed-force chain network., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 67 no. 3 Pt 1 (April, 2003), pp. 031302, ISSN 1539-3755 [12689059], [doi]  [abs]
  51. JE Socolar and SA Kauffman, Scaling in ordered and critical random boolean networks., Phys Rev Lett, vol. 90 no. 6 (March, 2003), pp. 068702, ISSN 0031-9007 [12633339], [doi]  [abs]
  52. JES Socolar, DG Schaeffer and P Claudin, Directed force chain networks and stress response in static granular materials, European Physical Journal E, vol. 7 no. 4 (December, 2002), pp. 353-370 [0201242]  [abs]
  53. M Otto, J-P Bouchaud, P Claudin and JES Socolar, Anisotropy in granular media: classical elasticity and directed force chain network, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 67 no. 3 1 (November, 2002), pp. 031302/1-031302/24, ISSN 1063-651X [0211015v2], [doi]  [abs]
  54. MG Sexton, JE Socolar and DG Schaeffer, Force distribution in a scalar model for noncohesive granular material., Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 60 no. 2 Pt B (April, 2002), pp. 1999-2008, ISSN 1063-651X [11969992]  [abs]
  55. JES Socolar, DG Schaeffer and P Claudin, Erratum: Directed force chain networks and stress response in static granular materials (The European Physical Journal E (2002) 7 (353-370)), European Physical Journal E, vol. 8 no. 4 (2002), pp. 453-
  56. O Beck, A Amann, E Schöll, JES Socolar and W Just, Comparison of time-delayed feedback schemes for spatiotemporal control of chaos in a reaction-diffusion system with global coupling, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 66 no. 1 (2002), pp. 016213/1-016213/6, ISSN 1539-3755 [doi]  [abs]
  57. I Harrington and JE Socolar, Limitation on stabilizing plane waves via time-delay feedback., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 64 no. 5 Pt 2 (December, 2001), pp. 056206, ISSN 1539-3755 [11736053], [doi]  [abs]
  58. J.E.S Socolar, Chaos, in Encyclopedia of Physical Science and Technology, 3rd Edition, edited by R. Meyers (2001), Academic Press (revision of article by R. Jensen.)
  59. JES Socolar, S Richards and WG Wilson, Evolution in a spatially structured population subject to rare epidemics, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 63 no. 4 I (2001), pp. 419081-419088  [abs]
  60. SA Richards, WG Wilson and JE Socolar, Selection for intermediate mortality and reproduction rates in a spatially structured population., Proc Biol Sci, vol. 266 no. 1436 (February, 2000), pp. 2383-2388, ISSN 0962-8452 [10643082], [doi]  [abs]
  61. ME Bleich and JES Socolar, Delayed feedback control of a paced excitable oscillator, International Journal of Bifurcation and Chaos in Applied Sciences and Engineering, vol. 10 no. 3 (2000), pp. 603-609  [abs]
  62. GY Onoda, PJ Steinhardt, DP DiVincenzo and JE Socolar, Growing perfect quasicrystals., Phys Rev Lett, vol. 60 no. 25 (1988), pp. 2653-2656 [10038414], [doi]
  63. J Krug and JE Socolar, Comment on "Scalings of growing self-organized surfaces", Phys Rev Lett, vol. 68 no. 5 (1992), pp. 722 [10045973], [doi]
  64. G Onoda, PJ Steinhardt, D DiVincenzo and JE Socolar, Onoda etal. reply., Phys Rev Lett, vol. 62 no. 10 (February, 1999), pp. 1210 [10039608], [doi]
  65. TC Lubensky, JE Socolar, PJ Steinhardt, PA Bancel and AP Heiney, Distortion and peak broadening in quasicrystal diffraction patterns., Phys Rev Lett, vol. 57 no. 12 (1986), pp. 1440-1443 [10033450], [doi]
  66. JE Socolar and DC Wright, Explanation of peak shapes observed in diffraction from icosahedral quasicrystals., Phys Rev Lett, vol. 59 no. 2 (1987), pp. 221-224 [10035483], [doi]
  67. JE Socolar, G Grinstein and C Jayaprakash, On self-organized criticality in nonconserving systems., Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 47 no. 4 (1993), pp. 2366-2376, ISSN 1063-651X [9960267]
  68. G Grinstein, C Jayaprakash and JE Socolar, Scale invariance of nonconserved quantities in driven systems., Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 48 no. 2 (1993), pp. R643-R646, ISSN 1063-651X [9960763]
  69. DJ Gauthier, DW Sukow, HM Concannon and JE Socolar, Stabilizing unstable periodic orbits in a fast diode resonator using continuous time-delay autosynchronization., Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 50 no. 3 (1994), pp. 2343-2346, ISSN 1063-651X [9962244]
  70. JE Socolar, DW Sukow and DJ Gauthier, Stabilizing unstable periodic orbits in fast dynamical systems., Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 50 no. 4 (1994), pp. 3245-3248, ISSN 1063-651X [9962372]
  71. ME Bleich and JE Socolar, Controlling spatiotemporal dynamics with time-delay feedback., Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 54 no. 1 (1996), pp. R17-R20, ISSN 1063-651X [9965164]
  72. JE Socolar, PJ Steinhardt and D Levine, Quasicrystals with arbitrary orientational symmetry., Rapid Communication, Phys Rev B Condens Matter, vol. 32 no. 8 (1985), pp. 5547-5550, ISSN 0163-1829 [9937798]
  73. JE Socolar and PJ Steinhardt, Quasicrystals. II. Unit-cell configurations., Phys Rev B Condens Matter, vol. 34 no. 2 (February, 1999), pp. 617-647, ISSN 0163-1829 [9939668]
  74. JE Socolar, TC Lubensky and PJ Steinhardt, Phonons, phasons, and dislocations in quasicrystals., Phys Rev B Condens Matter, vol. 34 no. 5 (1986), pp. 3345-3360, ISSN 0163-1829 [9940073]
  75. JE Socolar, Simple octagonal and dodecagonal quasicrystals., Phys Rev B Condens Matter, vol. 39 no. 15 (1989), pp. 10519-10551, ISSN 0163-1829 [9947860]
  76. J Krug, JE Socolar and G Grinstein, Surface fluctuations and criticality in a class of one-dimensional sandpile models., Phys Rev A, vol. 46 no. 8 (January, 1999), pp. R4479-R4482, ISSN 1050-2947 [9908766]
  77. DA Egolf and JES Socolar, Failure of linear control in noisy coupled map lattices, Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 57 no. 5 SUPPL. A (1998), pp. 5271-5275  [abs]
  78. JES Socolar and DJ Gauthier, Analysis and comparison of multiple-delay schemes for controlling unstable fixed points of discrete maps, Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 57 no. 6 (1998), pp. 6589-6595  [abs]
  79. DW Sukow, ME Bleich, DJ Gauthier and JE Socolar, Controlling chaos in a fast diode resonator using extended time-delay autosynchronization: Experimental observations and theoretical analysis., Chaos, vol. 7 no. 4 (1997), pp. 560-576 [12779682], [doi]  [abs]
  80. JES Socolar, Average stresses and force fluctuations in non-cohesive granular materials, Phys. Rev. E, vol. 57 (October, 1997), pp. 3204 [9710089v1], [doi]  [abs]
  81. ME Bleich, D Hochheiser, JV Moloney and JES Socolar, Controlling extended systems with spatially filtered, time-delayed feedback, Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 55 no. 3 SUPPL. A (1997), pp. 2119-2126  [abs]
  82. ME Bleich and JES Socolar, Stability of periodic orbits controlled by time-delay feedback, Physics Letters, Section A: General, Atomic and Solid State Physics, vol. 210 no. 1-2 (1995), pp. 87-94  [abs]
  83. J.E.S. Socolar, Growth Rules for Quasicrystals, in Quasicrystals: The State of the Art, edited by D. DiVincenzo and P. Steinhardt (1991), World Scientific, Singapore
  84. J.E.S. Socolar, The Alternation Condition and 2D Quasicrystals, in Quasicrystals, Springer Series in Solid-State Sciences, edited by T. Fujiwara and T. Ogawa, vol. 93 (1990), Springer-Verlag, Berlin
  85. JES Socolar, Weak matching rules for quasicrystals, Communications in Mathematical Physics, vol. 129 no. 3 (1990), pp. 599-619, ISSN 0010-3616 [doi]  [abs]
  86. J.E.S. Socolar, Locality Constraints and 2D Quasicrystals, in Quasicrystals - Adriatico Anniversary Research Conference, edited by M.V. Jaric and S. Lundqvist (1989), World Scientific, Singapore
  87. E MELE and J SOCOLAR, NUMERICAL-INTEGRATION OF THE TIME EVOLUTION OPERATOR - EXCITED-STATE DYNAMICS IN CONJUGATED MOLECULES, Quantum Chemistry Symposium, INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, vol. 18 (1984), pp. 347-358, ISSN 0020-7608 [Gateway.cgi]
  88. JP Gollub, EJ Romer and JE Socolar, Trajectory divergence for coupled relaxation oscillators: Measurements and models, Journal of Statistical Physics, vol. 23 no. 3 (1980), pp. 321-333, ISSN 0022-4715 [doi]  [abs]