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Publications of Joshua Socolar    :chronological  alphabetical  by type  bibtex listing:

  1. Hann, CT; Socolar, JES; Steinhardt, PJ, Local growth of icosahedral quasicrystalline tilings, Physical Review B, vol. 94 no. 1 (July, 2016) [1604.02479v1], [doi]  [abs]
  2. Marcoux, C; Socolar, JES, Sparse phonon modes of a limit-periodic structure, Physical Review B - Condensed Matter and Materials Physics, vol. 93 no. 17 (May, 2016), American Physical Society, ISSN 0163-1829 [PhysRevB.93.174102], [doi]  [abs]
  3. Fu, L; Steinhardt, W; Zhao, H; Socolar, JE; Charbonneau, P, Hard sphere packings within cylinders., Soft Matter, vol. 12 no. 9 (March, 2016), pp. 2505-2514, ISSN 1744-683X [doi]  [abs]
  4. Marcoux, C; Byington, TW; Qian, Z; Charbonneau, P; Socolar, JES, Erratum: Emergence of limit-periodic order in tiling models [Phys. Rev. E 90 , 012136 (2014)], Physical review. E, vol. 93 no. 2 (February, 2016), ISSN 2470-0045 [doi]
  5. Yang, Y; Fu, L; Marcoux, C; Socolar, JE; Charbonneau, P; Yellen, BB, Phase transformations in binary colloidal monolayers., Soft Matter, vol. 11 no. 12 (March, 2015), pp. 2404-2415, ISSN 1744-683X [doi]  [abs]
  6. Sun, M; Cheng, X; Socolar, JE, Regulatory logic and pattern formation in the early sea urchin embryo., Journal of Theoretical Biology, vol. 363 (December, 2014), pp. 80-92, ISSN 0022-5193 [doi]  [abs]
  7. Y. Yang, L. Fu, C. Marcoux, J. E. S. Socolar, P. Charbonneau, B. B. Yellen, Martensitic transformations in binary colloidal monolayers, PNAS (October, 2014)
  8. Marcoux, C; Byington, TW; Qian, Z; Charbonneau, P; Socolar, JE, Emergence of limit-periodic order in tiling models., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 90 no. 1 (July, 2014), pp. 012136, American Physical Society, ISSN 1539-3755 [PhysRevE.90.012136], [doi]  [abs]
  9. Cheng, X; Lyons, DC; Socolar, JE; McClay, DR, Delayed transition to new cell fates during cellular reprogramming., Developmental Biology, vol. 391 no. 2 (April, 2014), pp. 147-157, ISSN 0012-1606 [S001216061400222X], [doi]  [abs]
  10. Sun, M; Cheng, X; Socolar, JE, Causal structure of oscillations in gene regulatory networks: Boolean analysis of ordinary differential equation attractors., Chaos, vol. 23 no. 2 (June, 2013), pp. 025104 [23822502], [doi]  [abs]
  11. Cheng, X; Sun, M; Socolar, JE, Autonomous Boolean modelling of developmental gene regulatory networks., Journal of the Royal Society Interface, vol. 10 no. 78 (January, 2013), pp. 20120574 [23034351], [doi]  [abs]
  12. Byington, T; Socolar, JES, Hierarchical freezing of limit-periodic structure, Physical Review E (November, 2012)
  13. Gong, X; Socolar, JE, Quantifying the complexity of random Boolean networks., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 85 no. 6 Pt 2 (2012), pp. 066107 [23005162], [doi]  [abs]
  14. Khalil, KS; Sagastegui, A; Li, Y; Tahir, MA; Socolar, JE; Wiley, BJ; Yellen, BB, Binary colloidal structures assembled through Ising interactions., Nature Communications, vol. 3 (April, 2012), pp. 794 [22531179], [doi]  [abs]
  15. Durrett, R; Gleeson, JP; Lloyd, AL; Mucha, PJ; Shi, F; Sivakoff, D; Socolar, JE; Varghese, C, Graph fission in an evolving voter model., Proceedings of the National Academy of Sciences of USA, vol. 109 no. 10 (2012), pp. 3682-3687 [22355142], [doi]  [abs]
  16. Byington, TW; Socolar, JE, Hierarchical freezing in a lattice model., Physical Review Letters, vol. 108 no. 4 (January, 2012), pp. 045701 [22400863], [doi]  [abs]
  17. Sun, M; Socolar, JES, Comparison of autonomous Boolean network dynamics and ODE models, Chaos (2012)
  18. Socolar, JES; Taylor, JM, Forcing Nonperiodicity with a Single Tile, The Mathematical Intelligencer, vol. 34 no. 1 (Spring, 2012), pp. 18-28, ISSN 0343-6993 [doi]  [abs]
  19. Cheng, X; Sun, M; Socolar, JES, Autonomous Boolean modelling of developmental gene regulatory networks, J. Royal Soc. Interface, vol. 10 no. 78 (January, 2013), pp. 20120574 [23034351], [doi]  [abs]
  20. Socolar, JE, Local action, global impact: forcing nonperiodicity with a single structural unit., Chaos, vol. 21 no. 4 (December, 2011), pp. 041106 [22225336], [doi]  [abs]
  21. Socolar, JES; Taylor, JM, An aperiodic hexagonal tile, Journal of Combinatorial Theory, Series A, vol. 118 no. 8 (2011), pp. 2207-2231, Academic Press, Inc., Orlando, FL, USA, ISSN 0097-3165 [doi]  [abs]
  22. Cavalcante, HL; Gauthier, DJ; Socolar, JE; Zhang, R, On the origin of chaos in autonomous Boolean networks., Philosophical Transactions A, vol. 368 no. 1911 (January, 2010), pp. 495-513, ISSN 1364-503X [20008414], [doi]  [abs]
  23. Sevim, V; Gong, X; Socolar, JES, Reliability of transcriptional cycles and the yeast cell-cycle oscillator., PLoS computational biology, vol. 6 no. 7 (2010), pp. e1000842, ISSN 1553-7358 [20628620], [doi]  [abs]
  24. Zhang, R; de S Cavalcante, HL; Gao, Z; Gauthier, DJ; Socolar, JE; Adams, MM; Lathrop, DP, Boolean chaos., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 80 no. 4 Pt 2 (October, 2009), pp. 045202 [19905381], [doi]  [abs]
  25. Norrell, J; Socolar, JE, Boolean modeling of collective effects in complex networks., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 79 no. 6 (2009), pp. nihpa131303 [19649269], [doi]  [abs]
  26. Orlando, DA; Lin, CY; Bernard, A; Wang, JY; Socolar, JE; Iversen, ES; Hartemink, AJ; Haase, SB, Global control of cell-cycle transcription by coupled CDK and network oscillators., Nature, vol. 453 no. 7197 (June, 2008), pp. 944-947 [18463633], [doi]  [abs]
  27. Socolar, JES, Time-Delay Control for Discrete Maps (May, 2008), pp. 29-45 [doi]  [abs]
  28. D.A. Orlando, C.Y. Lin, A. Bernard, J.Y. Wang, J.E.S. Socolar, E.S. Iversen, A.J. Hartemink, and S.B. Haase, Global control of cell-cycle transcription by coupled CDK and network oscillators, Nature (May 7, 2008) [doi]
  29. Tighe, BP; Socolar, JE, Nonlinear elastic stress response in granular packings., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 77 no. 3 Pt 1 (March, 2008), pp. 031303, ISSN 1539-3755 [18517366], [doi]  [abs]
  30. Ribeiro, AS; Kauffman, SA; Lloyd-Price, J; Samuelsson, B; Socolar, JE, Mutual information in random Boolean models of regulatory networks., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 77 no. 1 Pt 1 (2008), pp. 011901, ISSN 1539-3755 [18351870], [doi]  [abs]
  31. J.E.S. Socolar, Time-delay control for discrete maps, in Handbook of Chaos Control, edited by E. Scholl and H. G. Schuster (December, 2007), Wiley-VCH Verlag GmbH [html]  [abs]
  32. Norrell, J; Samuelsson, B; Socolar, JE, Attractors in continuous and Boolean networks., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 76 no. 4 Pt 2 (October, 2007), pp. 046122, ISSN 1539-3755 [17995075], [doi]  [abs]
  33. Berger, CM; Cain, JW; Socolar, JE; Gauthier, DJ, Control of electrical alternans in simulations of paced myocardium using extended time-delay autosynchronization., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 76 no. 4 Pt 1 (October, 2007), pp. 041917, ISSN 1539-3755 (Selected for Virtual Journal of Biological Physics Research.) [17995036], [doi]  [abs]
  34. Shreim, A; Grassberger, P; Nadler, W; Samuelsson, B; Socolar, JE; Paczuski, M, Network analysis of the state space of discrete dynamical systems., Physical Review Letters, vol. 98 no. 19 (May, 2007), pp. 198701, ISSN 0031-9007 [17677672], [doi]  [abs]
  35. Socolar, JES, Erratum: The hexagonal parquet tiling, k-isohedral monotiles with arbitrarily large k (The Mathematical Intelligencer 29:2 (33-38)), The Mathematical Intelligencer, vol. 29 no. 4 (2007), pp. 6-, ISSN 0343-6993 [doi]
  36. Socolar, JES, The hexagonal parquet tiling k-isohedral monotiles with arbitrarily large k, The Mathematical Intelligencer, vol. 29 no. 2 (2007), pp. 33-38, ISSN 0343-6993 [pdf], [doi]  [abs] [author's comments]
  37. Foster, DV; Kauffman, SA; Socolar, JE, Network growth models and genetic regulatory networks., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 73 no. 3 Pt 1 (2006), pp. 031912, ISSN 1539-3755 [16605563], [doi]  [abs]
  38. J.E.S. Socolar, Nonlinear Dynamical Systems, in Complex Systems Science and Biomedicine, edited by Deisboeck and Kresh (February, 2006), Kluwer  [author's comments]
  39. Samuelsson, B; Socolar, JES, Exhaustive percolation on random networks, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 74 no. 3 (2006), pp. 031912, ISSN 1539-3755 [e036113], [doi]  [abs]
  40. Tighe, BP; Socolar, JE; Schaeffer, DG; Mitchener, WG; Huber, ML, Force distributions in a triangular lattice of rigid bars., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 72 no. 3 Pt 1 (September, 2005), pp. 031306, ISSN 1539-3755 [16241425], [doi]  [abs]
  41. Dealy, S; Kauffman, S; Socolar, J, Modeling pathways of differentiation in genetic regulatory networks with Boolean networks, Complexity, vol. 11 no. 1 (2005), pp. 52-60, ISSN 1076-2787 [doi]  [abs]
  42. Harrington, I; Socolar, JES, Design and robustness of delayed feedback controllers for discrete systems, Phys. Rev. E, vol. 69 no. 5 1 (2004), pp. 56207, ISSN 1539-3755  [abs]
  43. Harrington, I; Socolar, JES, Design and robustness of delayed feedback controllers for discrete systems, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 69 no. 5 1 (2004), pp. 056207-1-056207-8, ISSN 1539-3755  [abs]
  44. Hövel, P; Socolar, JE, Stability domains for time-delay feedback control with latency., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 68 no. 3 Pt 2 (2003), pp. 036206, ISSN 1539-3755 [14524867], [doi]  [abs]
  45. Socolar, JE; Kauffman, SA, Scaling in ordered and critical random boolean networks., Physical Review Letters, vol. 90 no. 6 (February, 2003), pp. 068702, ISSN 0031-9007 [12633339], [doi]  [abs]
  46. Hövel, P; Socolar, JES, Stability domains for time-delay feedback control with latency, Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 68 no. 3 2 (2003), pp. 362061-362067  [abs]
  47. Otto, M; Bouchaud, JP; Claudin, P; Socolar, JES, Anisotropy in granular media: Classical elasticity and directed-force chain network, Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 67 no. 3 1 (2003), pp. 031302/1-031302/24, ISSN 1063-651X [0211015v2], [doi]  [abs]
  48. Socolar, JES, Discrete models of force chain networks, Discrete and Continuous Dynamical Systems - Series B, vol. 3 no. 4 (2003), pp. 601-618, ISSN 1531-3492 [0212162]  [abs]
  49. Socolar, JES; Schaeffer, DG; Claudin, P, Erratum: Directed force chain networks and stress response in static granular materials (The European Physical Journal E (2002) 7 (353-370)), European Physical Journal E, vol. 8 no. 4 (2002), pp. 453-
  50. Socolar, JES; Schaeffer, DG; Claudin, P, Directed force chain networks and stress response in static granular materials, European Physical Journal E, vol. 7 no. 4 (2002), pp. 353-370 [0201242]  [abs]
  51. Beck, O; Amann, A; Schöll, E; Socolar, JES; Just, W, Comparison of time-delayed feedback schemes for spatiotemporal control of chaos in a reaction-diffusion system with global coupling, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 66 no. 1 (2002), pp. 016213/1-016213/6, ISSN 1539-3755 [doi]  [abs]
  52. Harrington, I; Socolar, JE, Limitation on stabilizing plane waves via time-delay feedback., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 64 no. 5 Pt 2 (November, 2001), pp. 056206, ISSN 1539-3755 [11736053], [doi]  [abs]
  53. J.E.S Socolar, Chaos, in Encyclopedia of Physical Science and Technology, 3rd Edition, edited by R. Meyers (2001), Academic Press (revision of article by R. Jensen.)
  54. Socolar, JES; Richards, S; Wilson, WG, Evolution in a spatially structured population subject to rare epidemics, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 63 no. 4 I (2001), pp. 419081-419088  [abs]
  55. Bleich, ME; Socolar, JES, Delayed feedback control of a paced excitable oscillator, International Journal of Bifurcation and Chaos in Applied Sciences and Engineering, vol. 10 no. 3 (2000), pp. 603-609  [abs]
  56. Richards, SA; Wilson, WG; Socolar, JE, Selection for intermediate mortality and reproduction rates in a spatially structured population., Proceedings of the Royal Society of London: Biological Sciences, vol. 266 no. 1436 (December, 1999), pp. 2383-2388, ISSN 0962-8452 [10643082], [doi]  [abs]
  57. Sexton, MG; Socolar, JE; Schaeffer, DG, Force distribution in a scalar model for noncohesive granular material., Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 60 no. 2 Pt B (August, 1999), pp. 1999-2008, ISSN 1063-651X [11969992]  [abs]
  58. Egolf, DA; Socolar, JES, Failure of linear control in noisy coupled map lattices, Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 57 no. 5 SUPPL. A (1998), pp. 5271-5275  [abs]
  59. Socolar, JES; Gauthier, DJ, Analysis and comparison of multiple-delay schemes for controlling unstable fixed points of discrete maps, Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 57 no. 6 (1998), pp. 6589-6595  [abs]
  60. Sukow, DW; Bleich, ME; Gauthier, DJ; Socolar, JE, Controlling chaos in a fast diode resonator using extended time-delay autosynchronization: Experimental observations and theoretical analysis., Chaos, vol. 7 no. 4 (1997), pp. 560-576 [12779682], [doi]  [abs]
  61. Bleich, ME; Hochheiser, D; Moloney, JV; Socolar, JES, Controlling extended systems with spatially filtered, time-delayed feedback, Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 55 no. 3 SUPPL. A (1997), pp. 2119-2126  [abs]
  62. Gauthier, DJ; Socolar, JES, Comment on Dynamic Control of Cardiac Alternans, Physical Review Letters, vol. 79 (1997), pp. 4938
  63. Bleich, ME; Socolar, JE, Controlling spatiotemporal dynamics with time-delay feedback., Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 54 no. 1 (1996), pp. R17-R20, ISSN 1063-651X [9965164]
  64. Bleich, ME; Socolar, JES, Stability of periodic orbits controlled by time-delay feedback, Physics Letters, Section A: General, Atomic and Solid State Physics, vol. 210 no. 1-2 (1995), pp. 87-94  [abs]
  65. Socolar, JE; Sukow, DW; Gauthier, DJ, Stabilizing unstable periodic orbits in fast dynamical systems., Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 50 no. 4 (1994), pp. 3245-3248, ISSN 1063-651X [9962372]
  66. Gauthier, DJ; Sukow, DW; Concannon, HM; Socolar, JE, Stabilizing unstable periodic orbits in a fast diode resonator using continuous time-delay autosynchronization., Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 50 no. 3 (1994), pp. 2343-2346, ISSN 1063-651X [9962244]
  67. Grinstein, G; Jayaprakash, C; Socolar, JE, Scale invariance of nonconserved quantities in driven systems., Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 48 no. 2 (1993), pp. R643-R646, ISSN 1063-651X [9960763]
  68. Socolar, JE; Grinstein, G; Jayaprakash, C, On self-organized criticality in nonconserving systems., Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 47 no. 4 (1993), pp. 2366-2376, ISSN 1063-651X [9960267]
  69. Krug, J; Socolar, JE; Grinstein, G, Surface fluctuations and criticality in a class of one-dimensional sandpile models., Physical Review A - Atomic, Molecular, and Optical Physics, vol. 46 no. 8 (October, 1992), pp. R4479-R4482, ISSN 1050-2947 [9908766]
  70. Krug, J; Socolar, JE, Comment on "Scalings of growing self-organized surfaces", Physical Review Letters, vol. 68 no. 5 (1992), pp. 722 [10045973], [doi]
  71. Socolar, JES, Theory of Packings of Identical Hard Disks Generated by Ballistic Deposition, Europhys. Lett., vol. 18 (1992), pp. 39
  72. J.E.S. Socolar, Growth Rules for Quasicrystals, in Quasicrystals: The State of the Art, edited by D. DiVincenzo and P. Steinhardt (1991), World Scientific, Singapore
  73. J.E.S. Socolar, The Alternation Condition and 2D Quasicrystals, in Quasicrystals, Springer Series in Solid-State Sciences, edited by T. Fujiwara and T. Ogawa, vol. 93 (1990), Springer-Verlag, Berlin
  74. Socolar, JES, Weak matching rules for quasicrystals, Communications in Mathematical Physics, vol. 129 no. 3 (1990), pp. 599-619, ISSN 0010-3616 [doi]  [abs]
  75. Socolar, JE, Simple octagonal and dodecagonal quasicrystals., Physical Review B - Condensed Matter and Materials Physics, vol. 39 no. 15 (1989), pp. 10519-10551, ISSN 0163-1829 [9947860]
  76. Onoda, G; Steinhardt, PJ; DiVincenzo, D; Socolar, JE, Onoda etal. reply., Physical Review Letters, vol. 62 no. 10 (March, 1989), pp. 1210 [10039608], [doi]
  77. J.E.S. Socolar, Locality Constraints and 2D Quasicrystals, in Quasicrystals - Adriatico Anniversary Research Conference, edited by M.V. Jaric and S. Lundqvist (1989), World Scientific, Singapore
  78. Onoda, GY; Steinhardt, PJ; DiVincenzo, DP; Socolar, JE, Growing perfect quasicrystals., Physical Review Letters, vol. 60 no. 25 (1988), pp. 2653-2656 [10038414], [doi]
  79. Socolar, JE; Wright, DC, Explanation of peak shapes observed in diffraction from icosahedral quasicrystals., Physical Review Letters, vol. 59 no. 2 (1987), pp. 221-224 [10035483], [doi]
  80. Lubensky, TC; Socolar, JE; Steinhardt, PJ; Bancel, PA; Heiney, AP, Distortion and peak broadening in quasicrystal diffraction patterns., Physical Review Letters, vol. 57 no. 12 (1986), pp. 1440-1443 [10033450], [doi]
  81. Socolar, JE; Lubensky, TC; Steinhardt, PJ, Phonons, phasons, and dislocations in quasicrystals., Physical Review B - Condensed Matter and Materials Physics, vol. 34 no. 5 (1986), pp. 3345-3360, ISSN 0163-1829 [9940073]
  82. Socolar, JE; Steinhardt, PJ, Quasicrystals. II. Unit-cell configurations., Physical Review B - Condensed Matter and Materials Physics, vol. 34 no. 2 (July, 1986), pp. 617-647, ISSN 0163-1829 [9939668]
  83. Socolar, JES, Phason Strain in Quasicrystals, Journal de Physique, vol. C3 (1986), pp. 217-227
  84. Socolar, JE; Steinhardt, PJ; Levine, D, Quasicrystals with arbitrary orientational symmetry., Rapid Communication, Physical Review B - Condensed Matter and Materials Physics, vol. 32 no. 8 (1985), pp. 5547-5550, ISSN 0163-1829 [9937798]
  85. MELE, E; SOCOLAR, J, NUMERICAL-INTEGRATION OF THE TIME EVOLUTION OPERATOR - EXCITED-STATE DYNAMICS IN CONJUGATED MOLECULES, Quantum Chemistry Symposium, International Journal of Quantum Chemistry, vol. 18 (1984), pp. 347-358, ISSN 0020-7608 [Gateway.cgi]
  86. Gollub, JP; Romer, EJ; Socolar, JE, Trajectory divergence for coupled relaxation oscillators: Measurements and models, Journal of Statistical Physics, vol. 23 no. 3 (1980), pp. 321-333, ISSN 0022-4715 [doi]  [abs]