| Duke Herbarium : Publications since January 2023
List all publications in the database. :chronological by author bibtex listing:
- Marqués-Gálvez, JE; Pandharikar, G; Basso, V; Kohler, A; Lackus, ND; Barry, K; Keymanesh, K; Johnson, J; Singan, V; Grigoriev, IV; Vilgalys, R; Martin, F; Veneault-Fourrey, C, Populus MYC2 orchestrates root transcriptional reprogramming of defence pathway to impair Laccaria bicolor ectomycorrhizal development.,
The New phytologist, vol. 242 no. 2
(April, 2024),
pp. 658-674 [doi] [abs]
- Lofgren, L; Nguyen, NH; Kennedy, P; Pérez-Pazos, E; Fletcher, J; Liao, H-L; Wang, H; Zhang, K; Ruytinx, J; Smith, AH; Ke, Y-H; Cotter, HVT; Engwall, E; Hameed, KM; Vilgalys, R; Branco, S, Suillus: an emerging model for the study of ectomycorrhizal ecology and evolution.,
The New phytologist
(April, 2024) [doi] [abs]
- U'Ren, JM; Oita, S; Lutzoni, F; Miadlikowska, J; Ball, B; Carbone, I; May, G; Zimmerman, NB; Valle, D; Trouet, V; Arnold, AE, Environmental drivers and cryptic biodiversity hotspots define endophytes in Earth's largest terrestrial biome.,
Current biology : CB, vol. 34 no. 5
(March, 2024),
pp. 1148-1156.e7 [doi] [abs]
- U'Ren, JM; Oita, S; Lutzoni, F; Miadlikowska, J; Ball, B; Carbone, I; May, G; Zimmerman, NB; Valle, D; Trouet, V; Arnold, AE, Environmental drivers and cryptic biodiversity hotspots define endophytes in Earth's largest terrestrial biome.,
Current biology : CB, vol. 34 no. 5
(March, 2024),
pp. 1148-1156.e7 [doi] [abs]
- Swenie, RA; Looney, BP; Ke, Y-H; Alejandro Rojas, J; Cubeta, MA; Langer, GJ; Vilgalys, R; Brandon Matheny, P, PacBio high-throughput multi-locus sequencing reveals high genetic diversity in mushroom-forming fungi.,
Molecular ecology resources, vol. 24 no. 1
(January, 2024),
pp. e13885 [doi] [abs]
- Magain, N; Miadlikowska, J; Goffinet, B; Goward, T; Pardo-De la Hoz, CJ; Jüriado, I; Simon, A; Mercado-Díaz, JA; Barlow, T; Moncada, B; Lücking, R; Spielmann, A; Canez, L; Wang, LS; Nelson, P; Wheeler, T; Lutzoni, F; Sérusiaux, E, High species richness in the lichen genus Peltigera (Ascomycota, Lecanoromycetes): 34 species in the dolichorhizoid and scabrosoid clades of section Polydactylon, including 24 new to science,
Persoonia: Molecular Phylogeny and Evolution of Fungi, vol. 51
(December, 2023),
pp. 1-88 [doi] [abs]
- Zhang, K; Wang, H; Tappero, R; Bhatnagar, JM; Vilgalys, R; Barry, K; Keymanesh, K; Tejomurthula, S; Grigoriev, IV; Kew, WR; Eder, EK; Nicora, CD; Liao, H-L, Ectomycorrhizal fungi enhance pine growth by stimulating iron-dependent mechanisms with trade-offs in symbiotic performance.,
The New phytologist
(December, 2023) [doi] [abs]
- Magain, N; Miadlikowska, J; Goffinet, B; Goward, T; Pardo-De la Hoz, CJ; Jüriado, I; Simon, A; Mercado-Díaz, JA; Barlow, T; Moncada, B; Lücking, R; Spielmann, A; Canez, L; Wang, LS; Nelson, P; Wheeler, T; Lutzoni, F; Sérusiaux, E, High species richness in the lichen genus Peltigera (Ascomycota, Lecanoromycetes): 34 species in the dolichorhizoid and scabrosoid clades of section Polydactylon, including 24 new to science,
Persoonia: Molecular Phylogeny and Evolution of Fungi, vol. 51
(December, 2023),
pp. 1-88 [doi] [abs]
- Piatkowski, B; Weston, DJ; Aguero, B; Duffy, A; Imwattana, K; Healey, AL; Schmutz, J; Shaw, AJ, Divergent selection and climate adaptation fuel genomic differentiation between sister species of Sphagnum (peat moss).,
Annals of botany, vol. 132 no. 3
(November, 2023),
pp. 499-512 [doi] [abs]
- Hay, NM; Windham, MD; Mandáková, T; Lysak, MA; Hendriks, KP; Mummenhoff, K; Lens, F; Pryer, KM; Bailey, CD, A Hyb-Seq phylogeny of Boechera and related genera using a combination of Angiosperms353 and Brassicaceae-specific bait sets.,
American journal of botany, vol. 110 no. 10
(October, 2023),
pp. e16226 [doi] [abs]
- Miadlikowska, J; Magain, N; Medeiros, ID; Pardo-De La Hoz, CJ; Carbone, I; Lagreca, S; Barlow, T; Myllys, L; Schmull, M; Lutzoni, F, Towards a nomenclatural clarification of the Peltigera ponojensis/monticola clade including metagenomic sequencing of type material and the introduction of P. globulata Miadl. & Magain sp. nov.,
Lichenologist, vol. 55 no. 5
(September, 2023),
pp. 315-324 [doi] [abs]
- Miadlikowska, J; Magain, N; Medeiros, ID; Pardo-De La Hoz, CJ; Carbone, I; Lagreca, S; Barlow, T; Myllys, L; Schmull, M; Lutzoni, F, Towards a nomenclatural clarification of the Peltigera ponojensis/monticola clade including metagenomic sequencing of type material and the introduction of P. globulata Miadl. & Magain sp. nov.,
Lichenologist, vol. 55 no. 5
(September, 2023),
pp. 315-324 [doi] [abs]
- Gryganskyi, AP; Golan, J; Muszewska, A; Idnurm, A; Dolatabadi, S; Mondo, SJ; Kutovenko, VB; Kutovenko, VO; Gajdeczka, MT; Anishchenko, IM; Pawlowska, J; Tran, NV; Ebersberger, I; Voigt, K; Wang, Y; Chang, Y; Pawlowska, TE; Heitman, J; Vilgalys, R; Bonito, G; Benny, GL; Smith, ME; Reynolds, N; James, TY; Grigoriev, IV; Spatafora, JW; Stajich, JE, Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned?,
Microorganisms, vol. 11 no. 7
(July, 2023),
pp. 1830 [doi] [abs]
- Hay, NM; Akinwuntan, JV; Cai, V; Windham, MD; Pryer, KM, Exploring Past and Future Distributions of the Rare Appalachian Oak Fern Using MaxEnt Modeling,
American Fern Journal, vol. 113 no. 2
(June, 2023),
pp. 109-125 [doi] [abs]
- Pardo-De la Hoz, CJ; Magain, N; Piatkowski, B; Cornet, L; Dal Forno, M; Carbone, I; Miadlikowska, J; Lutzoni, F, Ancient Rapid Radiation Explains Most Conflicts Among Gene Trees and Well-Supported Phylogenomic Trees of Nostocalean Cyanobacteria.,
Systematic biology, vol. 72 no. 3
(June, 2023),
pp. 694-712 [doi] [abs]
- Pardo-De la Hoz, CJ; Magain, N; Piatkowski, B; Cornet, L; Dal Forno, M; Carbone, I; Miadlikowska, J; Lutzoni, F, Ancient Rapid Radiation Explains Most Conflicts Among Gene Trees and Well-Supported Phylogenomic Trees of Nostocalean Cyanobacteria.,
Systematic biology, vol. 72 no. 3
(June, 2023),
pp. 694-712 [doi] [abs]
- Ke, Y-H; Branco, S; Bazzicalupo, AL; Nguyen, NH; Liao, H-L; Kennedy, P; Bruns, TD; Kuo, A; LaButti, K; Barry, K; Grigoriev, I; Vilgalys, R, Genomic determination of breeding systems and trans-specific evolution of HD MAT genes in suilloid fungi.,
Genetics, vol. 224 no. 2
(May, 2023),
pp. iyad069 [doi] [abs]
- Windham, MD; Picard, KT; Pryer, KM, An in-depth investigation of cryptic taxonomic diversity in the rare endemic mustard Draba maguirei.,
American journal of botany, vol. 110 no. 3
(March, 2023),
pp. 1-22 [doi] [abs]
- Healey, AL; Piatkowski, B; Lovell, JT; Sreedasyam, A; Carey, SB; Mamidi, S; Shu, S; Plott, C; Jenkins, J; Lawrence, T; Aguero, B; Carrell, AA; Nieto-Lugilde, M; Talag, J; Duffy, A; Jawdy, S; Carter, KR; Boston, L-B; Jones, T; Jaramillo-Chico, J; Harkess, A; Barry, K; Keymanesh, K; Bauer, D; Grimwood, J; Gunter, L; Schmutz, J; Weston, DJ; Shaw, AJ, Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics.,
Nature plants, vol. 9 no. 2
(February, 2023),
pp. 238-254 [doi] [abs]
- Policelli, N; Hoeksema, JD; Moyano, J; Vilgalys, R; Vivelo, S; Bhatnagar, JM, Global pine tree invasions are linked to invasive root symbionts.,
The New phytologist, vol. 237 no. 1
(January, 2023),
pp. 16-21 [doi]
- Robinson, S. C., M. Nieto-Lugilde, A. M. Duffy, K. M. Munoz, B. Aguero, A. Merced, K. Hassel, K. I. Flatberg, & A. J. Shaw. 2023, The Sphagnum cuspidatum complex: phylogeny, specie delimitation, and morphology,
Biological Journal of the Linnean Society, vol. https://doi.org/10.1093/biolinnean/blad1
(2023)
- Piatkowski, B., D. J. Weston, B. Aguero, A. Duffy, K. Imwattana, A. L. Healey, J. Schmutz, & A. Jonathan Shaw, Divergent selection fuels genomic differentiation between incipient species of Sphagnum (peat moss),
Annals of Botany, vol. 132
(2023),
pp. 499–512
- Shaw, A. J., M. Nieto-Lugilde, B. Aguero, A. Duffy, B. T. Piatkowski, J. Jaramillo-Chico, S. Robinson, K. Hassel, K. I. Flatberg, D. J. Weston, S. Schuette, & K. A. Hicks, Sphagnum diabolicum sp. nov. and S. magniae sp. nov.; morphological variation and taxonomy of the “S. magellanicum complex”,
The Bryologist, vol. 126
(2023),
pp. 69-89
- Shaw, A. J., A. Duffy, M. Nieto-Lugilde, B. Aguero, S. Schuette, S. Robinson, J. Loveland, K. A. Hicks, D. Weston, B. Piatkowski, M. Kolton, J. Koska, & A. Healey, Clonality, local population structure, and gametophyte sex ratios in cryptic species of the Sphagnum magellanicum complex,
Annals of Botany, vol. 132
(2023),
pp. 77–94
- Wieczynski, D., Yoshimura, K., Denison, E., Geisen, S., DeBruyn, J., Shaw, A. J., Weston, D., Pelletier, D., Wilhelm, S., J-P., Gibert, Viral infections likely mediate microbial controls on ecosystem responses to global warming,
FEMS Microbiology Ecology
(2023)
- PB Matheny, JM Curtis, V Hofstetter, MC Aime, JM Moncalvo, ZW Ge, JC Slot, JF Ammirati, TJ Baroni, NL Bougher, KW Hughes, DJ Lodge, RW Kerrigan, MT Seidl, DK Aanen, M DeNitis, GM Daniele, DE Desjardin, BR Kropp, LL Norvell, A Parker, EC Vellinga, R Vilgalys, DS Hibbett, Major clades of Agaricales: a multilocus phylogenetic overview.,
Mycologia, United States, vol. 98 no. 6
(October, 2007),
pp. 982-95, ISSN 0027-5514 [abs]
- JM Moncalvo, RH Nilsson, B Koster, SM Dunham, T Bernauer, PB Matheny, TM Porter, S Margaritescu, M Weiss, S Garnica, E Danell, G Langer, E Langer, E Larsson, KH Larsson, R Vilgalys, The cantharelloid clade: dealing with incongruent gene trees and phylogenetic reconstruction methods.,
Mycologia, United States, vol. 98 no. 6
(October, 2007),
pp. 937-48, ISSN 0027-5514 [abs]
- TY James, PM Letcher, JE Longcore, SE Mozley-Standridge, D Porter, MJ Powell, GW Griffith, R Vilgalys, A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota).,
Mycologia, United States, vol. 98 no. 6
(October, 2007),
pp. 860-71, ISSN 0027-5514 [abs]
- AE Arnold, DA Henk, RL Eells, F Lutzoni, R Vilgalys, Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR.,
Mycologia, United States, vol. 99 no. 2
(September, 2007),
pp. 185-206, ISSN 0027-5514 [abs]
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