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Center for Biomolecular and Tissue Engineering : Publications since January 2023

List all publications in the database.    :recent first  alphabetical  combined  bibtex listing:

Barr, Roger C.

  1. DiPersio, D.A. and Barr, R.C., Evaluation of the fan method of adaptive sampling on human electrocardiograms, Med. Biol. Eng. Comput. (UK), vol. 23 no. 5 , pp. 401 - 10  [abs]
  2. Plonsey, R. and Barr, R.C. and Witkowski, F.X., One-dimensional model of cardiac defibrillation, Med. Biol. Eng. Comput. (UK), vol. 29 no. 5 , pp. 465 - 9  [abs]
  3. Di Persio, D.A. and Barr, R.C., A prototype inverse solution in one-dimension to find the origin of excitation, strand radius, intracellular resistivity, or distance from the surface, IEEE Trans. Biomed. Eng. (USA), vol. BME-34 no. 9 , pp. 681 - 91  [abs]
  4. Hersh, L.T. and Barr, R.C. and Spach, M.S., An analysis of transfer coefficients calculated directly from epicardial and body surface potential measurements in the intact dog, IEEE Trans. Biomed. Eng. (USA), vol. BME-25 no. 5 , pp. 446 - 61  [abs]
  5. Mossop, B.J. and Barr, R.C. and Zaharoff, D.A. and Fan Yuan, Electric fields within cells as a function of membrane resistivity-a model study, IEEE Trans. Nanobiosc. (USA), vol. 3 no. 3 , pp. 225 - 31 [TNB.2004.833703]  [abs]

Chilkoti, Ashutosh

  1. J. W. Pyhtila and H. W. Ma and A. J. Simnick and A. Chilkoti and A. Wax, Analysis of long range correlations due to coherent light scattering from in-vitro cell arrays using angle-resolved low coherence interferometry, Journal Of Biomedical Optics, vol. 11 no. 3 (2006), ISSN 1083-3668  [abs]
  2. Ozer, I; Slezak, A; Sirohi, P; Li, X; Zakharov, N; Yao, Y; Everitt, JI; Spasojevic, I; Craig, SL; Collier, JH; Campbell, JE; D'Alessio, DA; Chilkoti, A, An injectable PEG-like conjugate forms a subcutaneous depot and enables sustained delivery of a peptide drug., Biomaterials, vol. 294 (March, 2023), pp. 121985 [doi]  [abs]
  3. Dai, Y; Farag, M; Lee, D; Zeng, X; Kim, K; Son, H-I; Guo, X; Su, J; Peterson, N; Mohammed, J; Ney, M; Shapiro, DM; Pappu, RV; Chilkoti, A; You, L, Programmable synthetic biomolecular condensates for cellular control., Nature chemical biology, vol. 19 no. 4 (April, 2023), pp. 518-528 [doi]  [abs]
  4. Heggestad, JT; Britton, RJ; Kinnamon, DS; Liu, J; Anderson, JG; Joh, DY; Quinn, Z; Fontes, CM; Hucknall, AM; Parks, R; Sempowski, GD; Denny, TN; Burke, TW; Haynes, BF; Woods, CW; Chilkoti, A, COVID-19 Diagnosis and SARS-CoV-2 Strain Identification by a Rapid, Multiplexed, Point-of-Care Antibody Microarray., Anal Chem, vol. 95 no. 13 (April, 2023), pp. 5610-5617 [doi]  [abs]
  5. Dai, Y; Chamberlayne, CF; Messina, MS; Chang, CJ; Zare, RN; You, L; Chilkoti, A, Interface of biomolecular condensates modulates redox reactions., Chem, vol. 9 no. 6 (June, 2023), pp. 1594-1609 [doi]  [abs]
  6. Burrow, DT; Heggestad, JT; Kinnamon, DS; Chilkoti, A, Engineering Innovative Interfaces for Point-of-Care Diagnostics., Current opinion in colloid & interface science (June, 2023), pp. 101718 [doi]  [abs]
  7. Kinnamon, DS; Heggestad, JT; Liu, J; Nguyen, T; Ly, V; Hucknall, AM; Fontes, CM; Britton, RJ; Cai, J-P; Chan, JF-W; Yuen, K-Y; Le, T; Chilkoti, A, Environmentally Resilient Microfluidic Point-of-Care Immunoassay Enables Rapid Diagnosis of Talaromycosis., ACS Sens, vol. 8 no. 6 (June, 2023), pp. 2228-2236 [doi]  [abs]
  8. Vahabi, H; Liu, J; Dai, Y; Joh, DY; Britton, R; Heggestad, J; Kinnamon, D; Rajput, S; Chilkoti, A, A gravity-driven droplet fluidic point-of-care test., Device, vol. 1 no. 1 (July, 2023), pp. 100009 [doi]  [abs]
  9. Semeniak, D; Cruz, DF; Chilkoti, A; Mikkelsen, MH, Plasmonic Fluorescence Enhancement in Diagnostics for Clinical Tests at Point-of-Care: A Review of Recent Technologies., Advanced materials (Deerfield Beach, Fla.), vol. 35 no. 34 (August, 2023), pp. e2107986 [doi]  [abs]
  10. Lazar, KM; Shetty, S; Chilkoti, A; Collier, JH, Immune-active polymeric materials for the treatment of inflammatory diseases, Current Opinion in Colloid and Interface Science, vol. 67 (October, 2023) [doi]  [abs]
  11. Sethi, V; Cohen-Gerassi, D; Meir, S; Ney, M; Shmidov, Y; Koren, G; Adler-Abramovich, L; Chilkoti, A; Beck, R, Modulating hierarchical self-assembly in thermoresponsive intrinsically disordered proteins through high-temperature incubation time., Scientific reports, vol. 13 no. 1 (December, 2023), pp. 21688 [doi]  [abs]
  12. Subramaniam, S; Akay, M; Anastasio, MA; Bailey, V; Boas, D; Bonato, P; Chilkoti, A; Cochran, JR; Colvin, V; Desai, TA; Duncan, JS; Epstein, FH; Fraley, S; Giachelli, C; Grande-Allen, KJ; Green, J; Guo, XE; Hilton, IB; Humphrey, JD; Johnson, CR; Karniadakis, G; King, MR; Kirsch, RF; Kumar, S; Laurencin, CT; Li, S; Lieber, RL; Lovell, N; Mali, P; Margulies, SS; Meaney, DF; Ogle, B; Palsson, B; A Peppas, N; Perreault, EJ; Rabbitt, R; Setton, LA; Shea, LD; Shroff, SG; Shung, K; Tolias, AS; van der Meulen, MCH; Varghese, S; Vunjak-Novakovic, G; White, JA; Winslow, R; Zhang, J; Zhang, K; Zukoski, C; Miller, MI, Grand Challenges at the Interface of Engineering and Medicine., IEEE Open J Eng Med Biol, vol. 5 (2024), pp. 1-13 [doi]  [abs]
  13. Deshpande, S; Yang, Y; Zauscher, S; Chilkoti, A, Enzymatic Synthesis of Aptamer-Polynucleotide Nanoparticles with High Anticancer Drug Loading for Targeted Delivery., Biomacromolecules, vol. 25 no. 1 (January, 2024), pp. 155-164 [doi]  [abs]
  14. Strader, RL; Shmidov, Y; Chilkoti, A, Encoding Structure in Intrinsically Disordered Protein Biomaterials., Accounts of chemical research, vol. 57 no. 3 (February, 2024), pp. 302-311 [doi]  [abs]
  15. Albarghouthi, FM; Semeniak, D; Khanani, I; Doherty, JL; Smith, BN; Salfity, M; MacFarlane, Q; Karappur, A; Noyce, SG; Williams, NX; Joh, DY; Andrews, JB; Chilkoti, A; Franklin, AD, Addressing Signal Drift and Screening for Detection of Biomarkers with Carbon Nanotube Transistors., ACS nano (February, 2024) [doi]  [abs]
  16. Li, Z; Shen, Q; Usher, ET; Anderson, AP; Iburg, M; Lin, R; Zimmer, B; Meyer, MD; Holehouse, AS; You, L; Chilkoti, A; Dai, Y; Lu, GJ, Phase transition of GvpU regulates gas vesicle clustering in bacteria., Nature microbiology, vol. 9 no. 4 (April, 2024), pp. 1021-1035 [doi]  [abs]
  17. Walter, V; Schmatko, T; Muller, P; Schroder, AP; MacEwan, SR; Chilkoti, A; Marques, CM, Negative lipid membranes enhance the adsorption of TAT-decorated elastin-like polypeptide micelles., Biophysical journal, vol. 123 no. 7 (April, 2024), pp. 901-908 [doi]  [abs]

Craig, Stephen L

  1. Johnson, PN; Yao, Y; Huang, X; Kevlishvili, I; Schrettl, S; Weder, C; Kulik, HJ; Craig, SL, Metal identity effects in the fracture behavior of coordinatively crosslinked elastomers, POLYMER, vol. 285 (2023) [doi]  [abs]
  2. Craig, SL, Concluding remarks: Fundamentals, applications and future of mechanochemistry., Faraday discussions, vol. 241 (January, 2023), pp. 485-491 [doi]  [abs]
  3. Lloyd, EM; Vakil, JR; Yao, Y; Sottos, NR; Craig, SL, Covalent Mechanochemistry and Contemporary Polymer Network Chemistry: A Marriage in the Making., Journal of the American Chemical Society, vol. 145 no. 2 (January, 2023), pp. 751-768 [doi]  [abs]
  4. Ouchi, T; Bowser, BH; Kouznetsova, TB; Zheng, X; Craig, SL, Strain-triggered acidification in a double-network hydrogel enabled by multi-functional transduction of molecular mechanochemistry., Materials horizons, vol. 10 no. 2 (February, 2023), pp. 585-593 [doi]  [abs]
  5. Ozer, I; Slezak, A; Sirohi, P; Li, X; Zakharov, N; Yao, Y; Everitt, JI; Spasojevic, I; Craig, SL; Collier, JH; Campbell, JE; D'Alessio, DA; Chilkoti, A, An injectable PEG-like conjugate forms a subcutaneous depot and enables sustained delivery of a peptide drug., Biomaterials, vol. 294 (March, 2023), pp. 121985 [doi]  [abs]
  6. Ouchi, T; Wang, W; Silverstein, BE; Johnson, JA; Craig, SL, Effect of strand molecular length on mechanochemical transduction in elastomers probed with uniform force sensors, Polymer Chemistry, vol. 14 no. 14 (March, 2023), pp. 1646-1655 [doi]  [abs]
  7. Wang, S; Panyukov, S; Craig, SL; Rubinstein, M, Contribution of Unbroken Strands to the Fracture of Polymer Networks, Macromolecules, vol. 56 no. 6 (March, 2023), pp. 2309-2318 [doi]  [abs]
  8. Wakefield, H; Kevlishvili, I; Wentz, KE; Yao, Y; Kouznetsova, TB; Melvin, SJ; Ambrosius, EG; Herzog-Arbeitman, A; Siegler, MA; Johnson, JA; Craig, SL; Kulik, HJ; Klausen, RS, Synthesis and Ring-Opening Metathesis Polymerization of a Strained trans-Silacycloheptene and Single-Molecule Mechanics of Its Polymer., Journal of the American Chemical Society, vol. 145 no. 18 (May, 2023), pp. 10187-10196 [doi]  [abs]
  9. Wang, S; Hu, Y; Kouznetsova, TB; Sapir, L; Chen, D; Herzog-Arbeitman, A; Johnson, JA; Rubinstein, M; Craig, SL, Facile mechanochemical cycloreversion of polymer cross-linkers enhances tear resistance., Science (New York, N.Y.), vol. 380 no. 6651 (June, 2023), pp. 1248-1252 [doi]  [abs]
  10. Caballero, RM; González-Gamboa, I; Craig, SL; Steinmetz, NF, Linear and multivalent PEGylation of the tobacco mosaic virus and the effects on its biological properties, Frontiers in Virology, vol. 3 (June, 2023), Frontiers Media SA [doi]  [abs]
  11. Yu, Y; O'Neill, RT; Boulatov, R; Widenhoefer, RA; Craig, SL, Allosteric control of olefin isomerization kinetics via remote metal binding and its mechanochemical analysis., Nature communications, vol. 14 no. 1 (August, 2023), pp. 5074 [doi]  [abs]
  12. Duan, C; Zheng, X; Craig, SL; Widenhoefer, RA, Force-Modulated C-C Reductive Elimination from Nickel Bis(polyfluorophenyl) Complexes, Organometallics, vol. 42 no. 15 (August, 2023), pp. 1918-1926, American Chemical Society (ACS) [doi]  [abs]
  13. Wentz, KE; Yao, Y; Kevlishvili, I; Kouznetsova, TB; Mediavilla, BA; Kulik, HJ; Craig, SL; Klausen, RS, Systematic Investigation of Silicon Substitution on Single Macromolecule Mechanics, Macromolecules, vol. 56 no. 17 (September, 2023), pp. 6776-6782 [doi]  [abs]
  14. Ritter, VC; McDonald, SM; Dobrynin, AV; Craig, SL; Becker, ML, Mechanochromism and Strain-Induced Crystallization in Thiol-yne-Derived Stereoelastomers., Advanced materials (Deerfield Beach, Fla.), vol. 35 no. 41 (October, 2023), pp. e2302163 [doi]  [abs]
  15. Zhao, J; Bobylev, EO; Lundberg, DJ; Oldenhuis, NJ; Wang, H; Kevlishvili, I; Craig, SL; Kulik, HJ; Li, X; Johnson, JA, Polymer Networks with Cubic, Mixed Pd(II) and Pt(II) M6L12 Metal-Organic Cage Junctions: Synthesis and Stress Relaxation Behavior., Journal of the American Chemical Society, vol. 145 no. 40 (October, 2023), pp. 21879-21885 [doi]  [abs]
  16. Beech, HK; Wang, S; Sen, D; Rota, D; Kouznetsova, TB; Arora, A; Rubinstein, M; Craig, SL; Olsen, BD, Reactivity-Guided Depercolation Processes Determine Fracture Behavior in End-Linked Polymer Networks., ACS macro letters, vol. 12 no. 12 (December, 2023), pp. 1685-1691 [doi]  [abs]
  17. Horst, M; Meisner, J; Yang, J; Kouznetsova, TB; Craig, SL; Martínez, TJ; Xia, Y, Mechanochemistry of Pterodactylane., Journal of the American Chemical Society, vol. 146 no. 1 (January, 2024), pp. 884-891 [doi]  [abs]
  18. Barrat, JL; Del Gado, E; Egelhaaf, SU; Mao, X; Dijkstra, M; Pine, DJ; Kumar, SK; Bishop, K; Gang, O; Obermeyer, A; Papadakis, CM; Tsitsilianis, C; Smalyukh, II; Hourlier-Fargette, A; Andrieux, S; Drenckhan, W; Wagner, N; Murphy, RP; Weeks, ER; Cerbino, R; Han, Y; Cipelletti, L; Ramos, L; Poon, WCK; Richards, JA; Cohen, I; Furst, EM; Nelson, A; Craig, SL; Ganapathy, R; Sood, AK; Sciortino, F; Mungan, M; Sastry, S; Scheibner, C; Fruchart, M; Vitelli, V; Ridout, SA; Stern, M; Tah, I; Zhang, G; Liu, AJ; Osuji, CO; Xu, Y; Shewan, HM; Stokes, JR; Merkel, M; Ronceray, P; Rupprecht, JF; Matsarskaia, O; Schreiber, F; Roosen-Runge, F; Aubin-Tam, ME; Koenderink, GH; Espinosa-Marzal, RM; Yus, J; Kwon, J, Soft matter roadmap, JPhys Materials, vol. 7 no. 1 (January, 2024) [doi]  [abs]
  19. Hu, Y; Lin, Y; Craig, SL, Mechanically Triggered Polymer Deconstruction through Mechanoacid Generation and Catalytic Enol Ether Hydrolysis., Journal of the American Chemical Society, vol. 146 no. 5 (February, 2024), pp. 2876-2881 [doi]  [abs]
  20. Lin, Y; Kouznetsova, TB; Foret, AG; Craig, SL, Solvent Polarity Effects on the Mechanochemistry of Spiropyran Ring Opening., Journal of the American Chemical Society, vol. 146 no. 6 (February, 2024), pp. 3920-3925 [doi]  [abs]
  21. Wu, Z; Bayón, JL; Kouznetsova, TB; Ouchi, T; Barkovich, KJ; Hsu, SK; Craig, SL; Steinmetz, NF, Virus-like Particles Armored by an Endoskeleton., Nano letters, vol. 24 no. 10 (March, 2024), pp. 2989-2997 [doi]  [abs]
  22. Duan, C; Malek, JC; Craig, SL; Widenhoefer, RA, Modulating Transition Metal Reactivity with Force, ChemCatChem, vol. 16 no. 5 (March, 2024) [doi]  [abs]
  23. Wang, J; Kouznetsova, TB; Xia, J; Ángeles, FJ; de la Cruz, MO; Craig, SL, A polyelectrolyte handle for single-molecule force spectroscopy, Journal of Polymer Science, vol. 62 no. 7 (April, 2024), pp. 1277-1286 [doi]  [abs]
  24. Sun, Y; Neary, WJ; Huang, X; Kouznetsova, TB; Ouchi, T; Kevlishvili, I; Wang, K; Chen, Y; Kulik, HJ; Craig, SL; Moore, JS, A Thermally Stable SO2-Releasing Mechanophore: Facile Activation, Single-Event Spectroscopy, and Molecular Dynamic Simulations., Journal of the American Chemical Society (April, 2024) [doi]  [abs]
  25. Hu, Y; Wang, L; Kevlishvili, I; Wang, S; Chiou, C-Y; Shieh, P; Lin, Y; Kulik, HJ; Johnson, JA; Craig, SL, Self-Amplified HF Release and Polymer Deconstruction Cascades Triggered by Mechanical Force., Journal of the American Chemical Society, vol. 146 no. 14 (April, 2024), pp. 10115-10123 [doi]  [abs]

Derbyshire, Emily R.

  1. Ong, HW; Truong, A; Kwarcinski, F; de Silva, C; Avalani, K; Havener, TM; Chirgwin, M; Galal, KA; Willis, C; Krämer, A; Liu, S; Knapp, S; Derbyshire, ER; Zutshi, R; Drewry, DH, Discovery of potent Plasmodium falciparum protein kinase 6 (PfPK6) inhibitors with a type II inhibitor pharmacophore., European journal of medicinal chemistry, vol. 249 (March, 2023), pp. 115043 [doi]  [abs]
  2. Keeler, AM; D'Ambrosio, HK; Ganley, JG; Derbyshire, ER, Characterization of Unexpected Self-Acylation Activity of Acyl Carrier Proteins in a Modular Type I Apicomplexan Polyketide Synthase., ACS chemical biology, vol. 18 no. 4 (April, 2023), pp. 785-793 [doi]  [abs]
  3. Mansfield, CR; Chirgwin, ME; Derbyshire, ER, Labeling strategies to track protozoan parasite proteome dynamics., Current opinion in chemical biology, vol. 75 (August, 2023), pp. 102316 [doi]  [abs]
  4. Viswanathan, NK; Chirgwin, ME; Gibbs, J; Kalaj, BN; Durham, S; Tran, J; Gomez, M; Lazaro, H; Chen, M; Mansfield, CR; Derbyshire, ER; Eagon, S, Synthesis and activity of β-carboline antimalarials targeting the Plasmodium falciparum heat shock 90 protein., Bioorganic & medicinal chemistry letters, vol. 92 (August, 2023), pp. 129410 [doi]  [abs]
  5. D'Ambrosio, HK; Keeler, AM; Derbyshire, ER, Examination of Secondary Metabolite Biosynthesis in Apicomplexa., Chembiochem : a European journal of chemical biology, vol. 24 no. 17 (September, 2023), pp. e202300263 [doi]  [abs]
  6. Keeler, AM; Petruzziello, PE; Boger, EG; D'Ambrosio, HK; Derbyshire, ER, Exploring the Chain Release Mechanism from an Atypical Apicomplexan Polyketide Synthase., Biochemistry, vol. 62 no. 17 (September, 2023), pp. 2677-2688 [doi]  [abs]
  7. Ong, HW; de Silva, C; Avalani, K; Kwarcinski, F; Mansfield, CR; Chirgwin, M; Truong, A; Derbyshire, ER; Zutshi, R; Drewry, DH, Characterization of 2,4-Dianilinopyrimidines Against Five P. falciparum Kinases PfARK1, PfARK3, PfNEK3, PfPK9, and PfPKB., ACS medicinal chemistry letters, vol. 14 no. 12 (December, 2023), pp. 1774-1784 [doi]  [abs]
  8. Schroeder, EA; Toro-Moreno, M; Raphemot, R; Sylvester, K; Colón, IC; Derbyshire, ER, Toxoplasma and Plasmodium associate with host Arfs during infection., edited by Blader, IJ, mSphere, vol. 9 no. 3 (March, 2024), pp. e0077023, American Society for Microbiology [doi]  [abs]
  9. Mansfield, CR; Quan, B; Chirgwin, ME; Eduful, B; Hughes, PF; Neveu, G; Sylvester, K; Ryan, DH; Kafsack, BFC; Haystead, TAJ; Leahy, JW; Fitzgerald, MC; Derbyshire, ER, Selective targeting of Plasmodium falciparum Hsp90 disrupts the 26S proteasome., Cell Chem Biol (March, 2024), pp. S2451-9456(24)00082-5 [doi]  [abs]

Dewhirst, Mark W.

  1. Engler, M.J. and Dewhirst, M.W. and Winget, J.M. and Oleson, J.R., Automated temperature scanning for hyperthermia treatment monitoring, Int. J. Radiat. Oncol. Biol. Phys. (UK), vol. 13 no. 9 , pp. 1377 - 82  [abs]
  2. Samulski, T.V. and Grant, W.J. and Oleson, J.R. and Leopold, K.A. and Dewhirst, M.W. and Vallario, P. and Blivin, J., Clinical experience with a multi-element ultrasonic hyperthermia system: analysis of treatment temperatures, Int. J. Hyperth. (UK), vol. 6 no. 5 , pp. 909 - 22  [abs]
  3. Thrall, D.E. and Rosner, G.L. and Azuma, C. and Larue, S.M. and Case, B.C. and Samulski, T. and Dewhirst, M.W., Using units of CEM 43°C T90, local hyperthermia thermal dose can be delivered as prescribed, Int. J. Hyperth. (UK), vol. 16 no. 5 , pp. 415 - 28 [026567300416712]  [abs]
  4. Vujaskovic, Z. and Rosen, E.L. and Blackwell, K.L. and Jones, E.L. and Brizel, D.M. and Prosnitz, L.R. and Samulski, T.V. and Dewhirst, M.W., Ultrasound guided pO2 measurement of breast cancer reoxygenation after neoadjuvant chemotherapy and hyperthermia treatment, Int. J. Hyperth. (UK), vol. 19 no. 5 , pp. 498 - 506 [0265673031000121517]  [abs]
  5. Kong, G. and Dewhirst, M.W., Hyperthermia and liposomes, Int. J. Hyperth. (UK), vol. 15 no. 5 , pp. 345 - 70 [026567399285558]  [abs]
  6. Thrall, D.E. and Larue, S.M. and Powers, B.E. and Page, R.L. and Johnson, J. and George, S.L. and Kornegay, J.N. and McEntee, M.C. and Levesque, D.C. and Smith, M. and Case, B.C. and Dewhirst, M.W. and Gillette, E.L., Use of whole body hyperthermia as a method to heat inaccessible tumours uniformly: a phase III trial in canine brain masses, Int. J. Hyperth. (UK), vol. 15 no. 5 , pp. 383 - 98 [026567399285576]  [abs]
  7. Prescott, D.M. and Charles, H.C. and Sostman, H.D. and Page, R.L. and Thrall, D.E. and Moore, D. and Oleson, J.R. and Dewhirst, M.W., Manipulation of intra- and extracellular pH in spontaneous canine tumours by use of hyperglycaemia [hyperthermia efficacy improvement], Int. J. Hyperth. (UK), vol. 9 no. 5 , pp. 745 - 54  [abs]

Fitzgerald, Michael C.

  1. Robison, ATR; Sturrock, GR; Zaengle-Barone, JM; Wiebelhaus, N; Dharani, A; Williams, IG; Fitzgerald, MC; Franz, KJ, Analysis of copper-induced protein precipitation across the E. coli proteome., Metallomics : integrated biometal science, vol. 15 no. 1 (January, 2023), pp. mfac098 [doi]  [abs]
  2. Bailey, MA; Tang, Y; Park, H-J; Fitzgerald, MC, Comparative Analysis of Protein Folding Stability-Based Profiling Methods for Characterization of Biological Phenotypes., Journal of the American Society for Mass Spectrometry, vol. 34 no. 3 (March, 2023), pp. 383-393 [doi]  [abs]
  3. Quan, B; Bailey, MA; Mantyh, J; Hsu, DS; Fitzgerald, MC, Protein Folding Stability Profiling of Colorectal Cancer Chemoresistance Identifies Functionally Relevant Biomarkers., Journal of proteome research, vol. 22 no. 6 (June, 2023), pp. 1923-1935 [doi]  [abs]
  4. Bailey, MA; Martyr, JG; Hargrove, AE; Fitzgerald, MC, Stability-Based Proteomics for Investigation of Structured RNA-Protein Interactions., Analytical chemistry (February, 2024) [doi]  [abs]
  5. Mansfield, CR; Quan, B; Chirgwin, ME; Eduful, B; Hughes, PF; Neveu, G; Sylvester, K; Ryan, DH; Kafsack, BFC; Haystead, TAJ; Leahy, JW; Fitzgerald, MC; Derbyshire, ER, Selective targeting of Plasmodium falciparum Hsp90 disrupts the 26S proteasome., Cell Chem Biol (March, 2024) [doi]  [abs]

Gordan, Raluca M.

  1. Mielko, Z; Zhang, Y; Sahay, H; Liu, Y; Schaich, MA; Schnable, B; Morrison, AM; Burdinski, D; Adar, S; Pufall, M; Van Houten, B; Gordân, R; Afek, A, UV irradiation remodels the specificity landscape of transcription factors., Proc Natl Acad Sci U S A, vol. 120 no. 11 (March, 2023), pp. e2217422120 [doi]  [abs]
  2. Glasscock, CJ; Pecoraro, R; McHugh, R; Doyle, LA; Chen, W; Boivin, O; Lonnquist, B; Na, E; Politanska, Y; Haddox, HK; Cox, D; Norn, C; Coventry, B; Goreshnik, I; Vafeados, D; Lee, GR; Gordan, R; Stoddard, BL; DiMaio, F; Baker, D, Computational design of sequence-specific DNA-binding proteins., bioRxiv (September, 2023) [doi]  [abs]
  3. Horton, CA; Alexandari, AM; Hayes, MGB; Marklund, E; Schaepe, JM; Aditham, AK; Shah, N; Suzuki, PH; Shrikumar, A; Afek, A; Greenleaf, WJ; Gordân, R; Zeitlinger, J; Kundaje, A; Fordyce, PM, Short tandem repeats bind transcription factors to tune eukaryotic gene expression., Science, vol. 381 no. 6664 (September, 2023), pp. eadd1250 [doi]  [abs]
  4. Martin, V; Zhuang, F; Zhang, Y; Pinheiro, K; Gordân, R, High-throughput data and modeling reveal insights into the mechanisms of cooperative DNA-binding by transcription factor proteins., Nucleic acids research, vol. 51 no. 21 (November, 2023), pp. 11600-11612 [doi]  [abs]
  5. Duan, M; Song, S; Wasserman, H; Lee, P-H; Liu, KJ; Gordân, R; He, Y; Mao, P, High UV damage and low repair, but not cytosine deamination, stimulate mutation hotspots at ETS binding sites in melanoma., Proc Natl Acad Sci U S A, vol. 121 no. 4 (January, 2024), pp. e2310854121 [doi]  [abs]

Guilak, Farshid

  1. Flahiff, C.M. and Narmoneva, D.A. and Huebner, J.L. and Kraus, V.B. and Guilak, F. and Setton, L.A., Osmotic loading to determine the intrinsic material properties of guinea pig knee cartilage, J. Biomech. (UK), vol. 35 no. 9 , pp. 1285 - 90 [S0021-9290(02)00079-9]  [abs]

Hargrove, Amanda

  1. Davila-Calderon, J; Li, M-L; Penumutchu, SR; Haddad, C; Malcolm, L; Hargrove, AE; Brewer, G; Tolbert, BS, Enterovirus Evolution Reveals the Mechanism of an RNA-Targeted Antiviral and Determinants of Viral Replication, in Cold Spring Harbor Laboratory, vol. 10 no. 7 (February, 2023), pp. eadg3060, American Association for the Advancement of Science (AAAS) [doi]  [abs]
  2. Bagnolini, G; Luu, TB; Hargrove, AE, Recognizing the power of machine learning and other computational methods to accelerate progress in small molecule targeting of RNA., RNA (New York, N.Y.), vol. 29 no. 4 (April, 2023), pp. 473-488, Cold Spring Harbor Laboratory [doi]  [abs]
  3. Vögele, J; Hymon, D; Martins, J; Ferner, J; Jonker, HRA; Hargrove, AE; Weigand, JE; Wacker, A; Schwalbe, H; Wöhnert, J; Duchardt-Ferner, E, High-resolution structure of stem-loop 4 from the 5'-UTR of SARS-CoV-2 solved by solution state NMR., Nucleic acids research, vol. 51 no. 20 (November, 2023), pp. 11318-11331 [doi]  [abs]
  4. Hymon, D; Martins, J; Richter, C; Sreeramulu, S; Wacker, A; Ferner, J; Patwardhan, NN; Hargrove, AE; Schwalbe, H, NMR 1H,19F-based screening of the four stem-looped structure 5_SL1-SL4 located in the 5'-untranslated region of SARS-CoV 2 RNA., RSC medicinal chemistry, vol. 15 no. 1 (January, 2024), pp. 165-177, Royal Society of Chemistry (RSC) [doi]  [abs]
  5. Bailey, MA; Martyr, JG; Hargrove, AE; Fitzgerald, MC, Stability-Based Proteomics for Investigation of Structured RNA-Protein Interactions., Analytical chemistry (February, 2024) [doi]  [abs]

Izatt, Joseph A.

  1. Changhuei Yang and McGuckin, L.E.L. and Simon, J.D. and Choma, M.A. and Applegate, B.E. and Izatt, J.A., Spectral triangulation molecular contrast optical coherence tomography with indocyanine green as the contrast agent, Opt. Lett. (USA), vol. 29 no. 17 (1), pp. 2016 - 18 [OL.29.002016]  [abs]
  2. Choma, M.A. and Sarunic, M.V. and Changhuei Yang and Izatt, J.A., Sensitivity advantage of swept source and Fourier domain optical coherence tomography, Opt. Express (USA), vol. 11 no. 18 (8)  [abs]
  3. Barton, J.K. and Welch, A.J. and Izatt, J.A., Investigating pulsed dye laser-blood vessel interaction with color Doppler optical coherence tomography, Opt. Express (USA), vol. 3 no. 6 (14)  [abs]
  4. Rollins, A.M. and Kulkarni, M.D. and Yazdanfar, S. and Ung-arunyawee, R. and Izatt, J.A., In vivo video rate optical coherence tomography, Opt. Express (USA), vol. 3 no. 6 (14)  [abs]
  5. Izatt, J.A. and Kulkami, M.D. and Yazdanfar, S. and Barton, J.K. and Welch, A.J., In vivo bidirectional color Doppler flow imaging of picoliter blood volumes using optical coherence tomography, Opt. Lett. (USA), vol. 22 no. 18 (15), pp. 1439 - 41  [abs]

Katz, David F.

  1. D. F. Katz and D. A. Slade and S. T. Nakajima, Analysis of pre-ovulatory changes in cervical mucus hydration and sperm penetrability, Advances In Contraception, vol. 13 no. 2-3 (1997), pp. 143 -- 151, ISSN 0267-4874  [abs]
  2. L. Fenster and D. F. Katz and A. J. Wyrobek and C. Pieper and D. M. Rempel and D. Oman and S. H. Swan, Effects of psychological stress on human semen quality, Journal Of Andrology, vol. 18 no. 2 (1997), pp. 194 -- 202, ISSN 0196-3635  [abs]
  3. A. J. Wyrobek and S. M. Schrader and S. D. Perreault and L. Fenster and G. Huszar and D. F. Katz and A. M. Osorio and V. Sublet and D. Evenson, Assessment of reproductive disorders and birth defects in communities near hazardous chemical sites .3. Guidelines for field studies of male reproductive disorders, Reproductive Toxicology, vol. 11 no. 2-3 (1997), pp. 243 -- 259, ISSN 0890-6238  [abs]
  4. G. R. Fulford and D. F. Katz and R. L. Powell, Swimming of spermatozoa in a linear viscoelastic fluid, Biorheology, vol. 35 no. 4-5 (1998), pp. 295 -- 309, ISSN 0006-355X  [abs]
  5. R. P. Amann and D. F. Katz, Reflections on CASA after 25 years, Journal Of Andrology, vol. 25 no. 3 (2004), pp. 317 -- 325, ISSN 0196-3635
  6. D. H. Owen and D. F. Katz, A review of the physical and chemical properties of human semen and the formulation of a semen simulant, Journal Of Andrology, vol. 26 no. 4 (2005), pp. 459 -- 469, ISSN 0196-3635  [abs]
  7. K. E. Braun and J. D. Boyer and M. H. Henderson and D. F. Katz and A. Wax, Label-free measurement of microbicidal gel thickness using low-coherence interferometry, Journal Of Biomedical Optics, vol. 11 no. 2 (2006), ISSN 1083-3668  [abs]

Lazarides, Anne A

  1. Lazarides, A.A. and Lance Kelly, K. and Jensen, T.R. and Schatz, G.C., Optical properties of metal nanoparticles and nanoparticle aggregates important in biosensors, THEOCHEM (Netherlands), vol. 529 (8), pp. 59 - 63, Vicksburg, MS, USA [S0166-1280(00)00532-7]  [abs]
  2. Lazarides, A.A. and Rabitz, H., On the relation between electronic structure and molecular dynamics, J. Chem. Phys. (USA), vol. 93 no. 6 (15), pp. 4192 - 210 [1.458752]  [abs]
  3. Lazarides, A.A. and Rabitz, H. and McCourt, F.R.W., A quantitative technique for revealing the usefulness of experimental data in refining a potential surface, J. Chem. Phys. (USA), vol. 101 no. 6 (15), pp. 4735 - 49 [1.467396]  [abs]

Setton, Lori A.

  1. Flahiff, C.M. and Narmoneva, D.A. and Huebner, J.L. and Kraus, V.B. and Guilak, F. and Setton, L.A., Osmotic loading to determine the intrinsic material properties of guinea pig knee cartilage, J. Biomech. (UK), vol. 35 no. 9 , pp. 1285 - 90 [S0021-9290(02)00079-9]  [abs]
  2. M. L. Upton and A. Hennerbichler and B. Fermor and F. Guilak and J. B. Weinberg and L. A. Setton, Biaxial strain effects on cells from the inner and outer regions of the meniscus, Connective Tissue Research, vol. 47 no. 4 (2006), pp. 207 -- 214, ISSN 0300-8207  [abs]

Therien, Michael J.

  1. Lu, S; Smith, BN; Meikle, H; Therien, MJ; Franklin, AD, All-Carbon Thin-Film Transistors Using Water-Only Printing., Nano letters, vol. 23 no. 6 (March, 2023), pp. 2100-2106 [doi]  [abs]
  2. Liu, R; Zhu, J; Rawson, J; Pederson, LR; Cinnater, VL; Mansergh, JP; Therien, MJ, Synthesis and functionalization of electron-deficient perfluoroalkyl porphyrin building blocks for supermolecular systems, Journal of Porphyrins and Phthalocyanines, vol. 27 no. 5 (May, 2023), pp. 741-756 [doi]  [abs]
  3. Ko, C-H; Zhu, Q; Bullard, G; Tassinari, F; Morisue, M; Naaman, R; Therien, MJ, Electron Spin Polarization and Rectification Driven by Chiral Perylene Diimide-Based Nanodonuts., The journal of physical chemistry letters, vol. 14 no. 45 (November, 2023), pp. 10271-10277 [doi]  [abs]
  4. Mastrocinque, F; Bullard, G; Alatis, JA; Albro, JA; Nayak, A; Williams, NX; Kumbhar, A; Meikle, H; Widel, ZXW; Bai, Y; Harvey, AK; Atkin, JM; Waldeck, DH; Franklin, AD; Therien, MJ, Band gap opening of metallic single-walled carbon nanotubes via noncovalent symmetry breaking., Proceedings of the National Academy of Sciences of the United States of America, vol. 121 no. 12 (March, 2024), pp. e2317078121 [doi]  [abs]

Truskey, George A.

  1. Torgan, C.E. and Burge, S.S. and Collinsworth, A.M. and Truskey, G.A. and Kraus, W.E., Differentiation of mammalian skeletal muscle cells cultured on microcarrier beads in a rotating cell culture system, Med. Biol. Eng. Comput. (UK), vol. 38 no. 5 , pp. 583 - 90  [abs]

Vo-Dinh, Tuan

  1. M. Panjehpour and D. Coppola and B. F. Overholt and T. Vo-dinh and S. Overholt, Photodynamic therapy of Barrett's esophagus: Ablation of Barrett's mucosa and reduction in p53 protein expression after treatment, Anticancer Research, vol. 28 no. 1B (2008), pp. 485 -- 489, ISSN 0250-7005  [abs]
  2. T. Vo-dinh, Nanobiosensing using plasmonic nanoprobes, Ieee Journal Of Selected Topics In Quantum Electronics, vol. 14 no. 1 (2008), pp. 198 -- 205, ISSN 1077-260X  [abs]
  3. Devadhasan, JP; Summers, AJ; Gu, J; Smith, S; Thomas, B; Fattahi, A; Helton, J; Pandit, SG; Gates-Hollingsworth, M; Hau, D; Pflughoeft, KJ; Montgomery, DC; Atta, S; Vo-Dinh, T; AuCoin, D; Zenhausern, F, Point-of-care vertical flow immunoassay system for ultra-sensitive multiplex biothreat-agent detection in biological fluids., Biosensors & bioelectronics, vol. 219 (January, 2023), pp. 114796 [doi]  [abs]
  4. Canning, AJ; Chen, X; Li, JQ; Jeck, WR; Wang, H-N; Vo-Dinh, T, miRNA probe integrated biosensor platform using bimetallic nanostars for amplification-free multiplexed detection of circulating colorectal cancer biomarkers in clinical samples., Biosens Bioelectron, vol. 220 (January, 2023), pp. 114855 [doi]  [abs]
  5. Atta, S; Vo-Dinh, T, Solution-Based Ultra-Sensitive Surface-Enhanced Raman Scattering Detection of the Toxin Bacterial Biomarker Pyocyanin in Biological Fluids Using Sharp-Branched Gold Nanostars., Analytical chemistry, vol. 95 no. 5 (February, 2023), pp. 2690-2697 [doi]  [abs]
  6. Cupil-Garcia, V; Li, JQ; Norton, SJ; Odion, RA; Strobbia, P; Menozzi, L; Ma, C; Hu, J; Zentella, R; Boyanov, MI; Finfrock, YZ; Gursoy, D; Douglas, DS; Yao, J; Sun, T-P; Kemner, KM; Vo-Dinh, T, Plasmonic nanorod probes' journey inside plant cells for in vivo SERS sensing and multimodal imaging., Nanoscale, vol. 15 no. 13 (March, 2023), pp. 6396-6407 [doi]  [abs]
  7. Atta, S; Canning, AJ; Odion, R; Wang, HN; Hau, D; Devadhasan, JP; Summers, AJ; Gates-Hollingsworth, MA; Pflughoeft, KJ; Gu, J; Montgomery, DC; AuCoin, DP; Zenhausern, F; Vo-Dinh, T, Sharp Branched Gold Nanostar-Based Lateral-Flow Immunoassay for Detection of Yersinia pestis, ACS Applied Nano Materials, vol. 6 no. 5 (March, 2023), pp. 3884-3892 [doi]  [abs]
  8. Atta, S; Vo-Dinh, T, Ultra-trace SERS detection of cocaine and heroin using bimetallic gold-silver nanostars (BGNS-Ag)., Analytica chimica acta, vol. 1251 (April, 2023), pp. 340956 [doi]  [abs]
  9. Atta, S; Vo-Dinh, T, A hybrid plasmonic nanoprobe using polyvinylpyrrolidone-capped bimetallic silver-gold nanostars for highly sensitive and reproducible solution-based SERS sensing., The Analyst, vol. 148 no. 8 (April, 2023), pp. 1786-1796 [doi]  [abs]
  10. Li, S; Anwar, IJ; Canning, AJ; Vo-Dinh, T; Kirk, AD; Xu, H, Xenorecognition and costimulation of porcine endothelium-derived extracellular vesicles in initiating human porcine-specific T cell immune responses., Am J Transplant, vol. 23 no. 7 (July, 2023), pp. 904-919 [doi]  [abs]
  11. Wang, H-N; Vo-Dinh, T, Cascade Amplified Plasmonics Molecular Biosensor for Sensitive Detection of Disease Biomarkers., Biosensors, vol. 13 no. 8 (July, 2023), pp. 774 [doi]  [abs]
  12. Srinivasan, ES; Liu, Y; Odion, RA; Chongsathidkiet, P; Wachsmuth, LP; Haskell-Mendoza, AP; Edwards, RM; Canning, AJ; Willoughby, G; Hinton, J; Norton, SJ; Lascola, CD; Maccarini, PF; Mariani, CL; Vo-Dinh, T; Fecci, PE, Gold Nanostars Obviate Limitations to Laser Interstitial Thermal Therapy (LITT) for the Treatment of Intracranial Tumors., Clin Cancer Res, vol. 29 no. 16 (August, 2023), pp. 3214-3224 [doi]  [abs]
  13. Atta, S; Li, JQ; Vo-Dinh, T, Multiplex SERS detection of polycyclic aromatic hydrocarbon (PAH) pollutants in water samples using gold nanostars and machine learning analysis., The Analyst, vol. 148 no. 20 (October, 2023), pp. 5105-5116 [doi]  [abs]
  14. Li, JQ; Neng-Wang, H; Canning, AJ; Gaona, A; Crawford, BM; Garman, KS; Vo-Dinh, T, Surface-Enhanced Raman Spectroscopy-Based Detection of Micro-RNA Biomarkers for Biomedical Diagnosis Using a Comparative Study of Interpretable Machine Learning Algorithms., Appl Spectrosc, vol. 78 no. 1 (January, 2024), pp. 84-98 [doi]  [abs]
  15. Atta, S; Canning, AJ; Vo-Dinh, T, Rapid SERS assay for determination of the opioid fentanyl using silver-coated sharply branched gold nanostars., Mikrochimica acta, vol. 191 no. 2 (January, 2024), pp. 110 [doi]  [abs]
  16. Vu, T; Klippel, P; Canning, AJ; Ma, C; Zhang, H; Kasatkina, LA; Tang, Y; Xia, J; Verkhusha, VV; Vo-Dinh, T; Jing, Y; Yao, J, On the Importance of Low-Frequency Signals in Functional and Molecular Photoacoustic Computed Tomography., IEEE transactions on medical imaging, vol. 43 no. 2 (February, 2024), pp. 771-783 [doi]  [abs]
  17. Atta, S; Canning, AJ; Vo-Dinh, T, A simple low-cost flexible plasmonic patch based on spiky gold nanostars for ultra-sensitive SERS sensing., The Analyst, vol. 149 no. 7 (March, 2024), pp. 2084-2096 [doi]  [abs]
  18. Atta, S; Zhao, Y; Li, JQ; Vo-Dinh, T, Dual-Modal Colorimetric and Surface-Enhanced Raman Scattering (SERS)-Based Lateral Flow Immunoassay for Ultrasensitive Detection of SARS-CoV-2 Using a Plasmonic Gold Nanocrown., Analytical chemistry, vol. 96 no. 12 (March, 2024), pp. 4783-4790 [doi]  [abs]
  19. Naquin, TD; Canning, AJ; Gu, Y; Chen, J; Naquin, CM; Xia, J; Lu, B; Yang, S; Koroza, A; Lin, K; Wang, H-N; Jeck, WR; Lee, LP; Vo-Dinh, T; Huang, TJ, Acoustic separation and concentration of exosomes for nucleotide detection: ASCENDx., Sci Adv, vol. 10 no. 10 (March, 2024), pp. eadm8597 [doi]  [abs]
  20. Canning, AJ; Vo-Dinh, T, Caged gold nanostars: a novel plasmonic nanoplatform with potential theranostic applications., Nanoscale (April, 2024) [doi]  [abs]

Zauscher, Stefan

  1. Young, MN; Sindoni, MJ; Lewis, AH; Zauscher, S; Grandl, J, The energetics of rapid cellular mechanotransduction., Proc Natl Acad Sci U S A, vol. 120 no. 8 (February, 2023), pp. e2215747120 [doi]  [abs]
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