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Publications of John Harer    :recent first  alphabetical  combined  bibtex listing:

Books

  1. Penner, R. C. and Harer, J. L., Combinatorics of train tracks, pp. xii+216, 1992, Princeton University Press, Princeton, NJ [MR94b:57018]
  2. Edelsbrunner, H; Harer, J, Computational Topology - an Introduction. (2010), American Mathematical Society, ISBN 978-0-8218-4925-5 (http://www.ams.org/bookstore-getitem/item=mbk-69.)  [abs]

Papers Published

  1. Harer, John, Representing elements of pi1(M3) by fibred knots, Math. Proc. Cambridge Philos. Soc., vol. 92, no. 1, pp. 133--138, 1982 [MR83j:57005]
  2. Harer, John, The homology of the mapping class group and its connection to surface bundles over surfaces, Four-manifold theory (Durham, N.H., 1982), pp. 311--314, 1984, Amer. Math. Soc., Providence, RI [MR86c:57010]
  3. Harer, John L., Stability of the homology of the mapping class groups of orientable surfaces, Ann. of Math. (2), vol. 121, no. 2, pp. 215--249, 1985 [MR87f:57009]
  4. Geometry and topology, Proceedings of the special year held at the University of Maryland, College Park, Md., 1983/84, edited by Alexander, J. and Harer, J., pp. vi+292, 1985, Springer-Verlag, Berlin [MR87a:57003]
  5. Harer, John and Kas, Arnold and Kirby, Robion, Handlebody decompositions of complex surfaces, Mem. Amer. Math. Soc., vol. 62, no. 350, pp. iv+102, 1986 [MR88e:57030]
  6. Harer, John L., The cohomology of the moduli space of curves, Theory of moduli (Montecatini Terme, 1985), pp. 138--221, 1988, Springer, Berlin [MR90a:32026]
  7. Harer, John, The third homology group of the moduli space of curves, Duke Math. J., vol. 63, no. 1, pp. 25--55, 1991 [MR92d:57012]
  8. Harer, John L., The rational Picard group of the moduli space of Riemann surfaces with spin structure, Mapping class groups and moduli spaces of Riemann surfaces (Gottingen, 1991/Seattle, WA, 1991), pp. 107--136, 1993, Amer. Math. Soc., Providence, RI [MR94h:14008]
  9. Harer, J, On handlebody structures for hypersurfaces in ℂ3 and ℂP3, Mathematische Annalen, vol. 238 no. 1 (February, 1978), pp. 51-58, Springer Nature, ISSN 0025-5831 [MR80d:57020], [doi]
  10. Casson, AJ; Harer, JL, Some homology lens spaces which bound rational homology balls, Pacific Journal of Mathematics, vol. 96 no. 1 (January, 1981), pp. 23-36, Mathematical Sciences Publishers [MR83h:57013], [doi]  [abs]
  11. HARER, J, How to construct all fibered knots and links, Topology, vol. 21 no. 3 (1982), pp. 263-280, Elsevier BV, ISSN 0040-9383 [MR83e:57007], [doi]
  12. Harer, J, Representing elements of π1 M3 by fibred knots, Mathematical Proceedings of the Cambridge Philosophical Society, vol. 92 no. 01 (July, 1982), pp. 133-133, Cambridge University Press (CUP) [doi]
  13. HARER, JL, The second homology group of the mapping class group of an orientable surface, Invent.Math., vol. 72 (1983), pp. 221-239 [doi]
  14. Harer, J, The second homology group of the mapping class group of an orientable surface, Inventiones Mathematicae, vol. 72 no. 2 (June, 1983), pp. 221-239, Springer Nature, ISSN 0020-9910 [MR84g:57006], [doi]
  15. HARER, J, The virtual cohomological dimension of the mapping class group of an orientable surface, Invent. Math., vol. 84 no. 1 (1986), pp. 157-176, Springer Nature, ISSN 0020-9910 [MR87c:32030], [doi]
  16. Harer, J; Zagier, D, The Euler characteristic of the moduli space of curves, Inventiones Mathematicae, vol. 85 no. 3 (1986), pp. 457-485, ISSN 0020-9910 [MR87i:32031], [doi]
  17. HARER, J; KAS, A; KIRBY, R, HANDLEBODY STRUCTURES FOR COMPLEX-SURFACES, Memoirs of the American Mathematical Society, vol. 62 no. 350 (July, 1986), pp. 1-102
  18. Harer, J; Zagier, D, The Euler characteristic of the moduli space of curves, Inventiones Mathematicae, vol. 85 no. 3 (October, 1986), pp. 457-485, ISSN 1435-9855 [doi]  [abs]
  19. Harer, JL, Stability of the homology of the moduli spaces of Riemann surfaces with spin structure, Mathematische Annalen, vol. 287 no. 1 (March, 1990), pp. 323-334, Springer Nature, ISSN 0025-5831 [MR91e:57002], [doi]
  20. Harer, J, The third homology group of the moduli space of curves, Duke Mathematical Journal, vol. 63 no. 1 (January, 1991), pp. 25-55, Duke University Press [doi]
  21. Edelsbrunner, H; Harer, J; Zomorodian, A, Hierarchical Morse complexes for piecewise linear 2-manifolds, Proceedings of the Annual Symposium on Computational Geometry (January, 2001), pp. 70-79  [abs]
  22. Agarwal, PK; Collins, AD; Harer, JL, Minimal trap design, Proceedings Ieee International Conference on Robotics and Automation, vol. 3 (January, 2001), pp. 2243-2248, IEEE [doi]  [abs]
  23. Goulden, IP; Harer, JL; Jackson, DM, A geometric parametrization for the virtual euler characteristics of the moduli spaces of real and complex algebraic curves, Transactions of the American Mathematical Society, vol. 353 no. 11 (December, 2001), pp. 4405-4427, ISSN 0002-9947 [MR1851176]  [abs]
  24. with H. Edelsbrunner., Jacobi sets of multiple Morse functions., Foundations of Computational Mathematics, Minneapolis, eds. F. Cucker, R. DeVore, P. Olver and E. Sueli, Cambridge Univ. Press, England, (2002), pp. 37-57  [abs]
  25. Edelsbrunner, H; Harer, J; Zomorodian, A, Hierarchical Morse-Smale complexes for piecewise linear 2-manifolds, Discrete & Computational Geometry, vol. 30 no. 1 (January, 2003), pp. 87-107, Springer Nature, ISSN 0179-5376 [doi]  [abs]
  26. with Edelsbrunner, H; Harer, J; Natarajan, V; Pascucci, V, Morse-Smale complexes for piecewise linear 3-manifolds, Proceedings of the Annual Symposium on Computational Geometry (July, 2003), pp. 361-370  [abs]
  27. Cole-McLaughlin, K; Edelsbrunner, H; Harer, J; Natarajan, V; Pascucci, V, Loops in Reeb graphs of 2-manifolds, Proceedings of the Annual Symposium on Computational Geometry (July, 2003), pp. 344-350  [abs]
  28. with Collins, AD; Agarwal, PK; Harer, JL, HPRM: A hierarchical PRM, Proceedings Ieee International Conference on Robotics and Automation, vol. 3 (December, 2003), pp. 4433-4438  [abs]
  29. with Cole-McLaughlin, K; Edelsbrunner, H; Harer, J; Natarajan, V; Pascucci, V, Loops in Reeb graphs of 2-manifolds, Discrete & Computational Geometry, vol. 32 no. 2 (January, 2004), pp. 231-244, Springer Nature [doi]  [abs]
  30. with Edelsbrunner, H; Harer, J; Mascarenhas, A; Pascucci, V, Time-varying Reeb graphs for continuous space-time data, Proceedings of the Annual Symposium on Computational Geometry (September, 2004), pp. 366-372  [abs]
  31. with Agarwal, PK; Edelsbrunner, H; Harer, J; Wang, Y, Extreme elevation on a 2-manifold, Proceedings of the Annual Symposium on Computational Geometry (September, 2004), pp. 357-365  [abs]
  32. with Edelsbrunner, H; Harer, J; Natarajan, V; Pascucci, V, Local and global comparison of continuous functions, Ieee Visualization 2004 Proceedings, Vis 2004 (December, 2004), pp. 275-280, IEEE Comput. Soc [doi]  [abs]
  33. Cohen-Steiner, D; Edelsbrunner, H; Harer, J, Stability of persistence diagrams, Proceedings of the Annual Symposium on Computational Geometry (December, 2005), pp. 263-271, ACM Press [doi]  [abs]
  34. Agarwal, PK; Edelsbrunner, H; Harer, J; Wang, Y, Extreme elevation on a 2-manifold, Discrete & Computational Geometry, vol. 36 no. 4 (January, 2006), pp. 553-572, Springer Nature, ISSN 0179-5376 [doi]  [abs]
  35. Bendich, P; Cohen-Steiner, D; Edelsbrunner, H; Harer, J; Morozov, D, Inferring local homology from sampled stratified spaces, Annual Symposium on Foundations of Computer Science (Proceedings) (2007), pp. 536-546, ISBN 978-0-7695-3010-9 [doi]
  36. Cohen-Steiner, D; Edelsbrunner, H; Harer, J, Stability of persistence diagrams, Discrete & Computational Geometry, vol. 37 no. 1 (January, 2007), pp. 103-120, Springer Nature, ISSN 0179-5376 [doi]  [abs] [author's comments]
  37. Czumaj, A; Sohler, C, Testing Expansion in Bounded-Degree Graphs, 48th Annual Ieee Symposium on Foundations of Computer Science (Focs'07) (October, 2007), pp. 536-546, IEEE, ISBN 9780769530109 [doi]
  38. Attali, D; Edelsbrunner, H; Harer, J; Mileyko, Y, Alpha-beta witness complexes, Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 4619 LNCS (December, 2007), pp. 386-397, ISSN 0302-9743  [abs]
  39. Bendice, P; Cohen-Steiner, D; Edelsbrunner, H; Harer, J; Morozov, D, Inferring local homology from sampled stratified spaces, Annual Symposium on Foundations of Computer Science (Proceedings) (December, 2007), pp. 536-546, IEEE, ISSN 0272-5428 [available here], [doi]  [abs]
  40. Edelsbrunner, H; Harer, J, Persistent homology - a survey, edited by Goodman, JE; Pach, J; Pollack, R, Surveys on Discrete and Computational Geometry: Twenty Years Later, vol. 453 (January, 2008), pp. 257-+, AMER MATHEMATICAL SOC, ISBN 978-0-8218-4239-3 [pdf]  [abs]
  41. Edelsbrunner, H; Harer, J; Mascarenhas, A; Pascucci, V; Snoeyink, J, Time-varying Reeb graphs for continuous space-time data, Computational Geometry, vol. 41 no. 3 (November, 2008), pp. 149-166, Elsevier BV, ISSN 0925-7721 [doi]  [abs]
  42. Edelsbrunner, H; Harer, J; Patel, AK, Reeb spaces of piecewise linear mappings, Proceedings of the Annual Symposium on Computational Geometry (December, 2008), pp. 242-250, ACM Press [doi]  [abs]
  43. Cohen-Steiner, D; Edelsbrunner, H; Harer, J; Morozov, D, Persistent homology for kernels, images, and cokernels, Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms (2009), pp. 1011-1020 [available here]  [abs]
  44. Fink, T; Ahnert, S; Bar On, R; Harer, J, Exact dynamics of Boolean networks with connectivity one, PRL (2009)  [abs]
  45. Cohen-Steiner, D; Edelsbrunner, H; Harer, J, Extending persistence using poincaré and lefschetz duality (Foundations of Computational Mathematics DOI 10.1007/s10208-008-9027-z), Foundations of Computational Mathematics, vol. 9 no. 1 (February, 2009), pp. 133-134, Springer Nature, ISSN 1615-3375 [doi]
  46. Cohen-Steiner, D; Edelsbrunner, H; Harer, J, Extending persistence using poincaré and lefschetz duality, Foundations of Computational Mathematics, vol. 9 no. 1 (February, 2009), pp. 79-103, Springer Nature, ISSN 1615-3375 [doi]  [abs]
  47. Edelsbrunner, H; Harer, J, The persistent Morse complex segmentation of a 3-manifold, in 3D Physiological Human Workshop, 2009, Lecture Notes Comp. Sci., edited by N. Magnenat-Thalmann, Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 5903 LNCS (December, 2009), pp. 36-50, Springer Berlin Heidelberg, ISSN 0302-9743 [doi]  [abs]
  48. Iyer-Pascuzzi, AS; Symonova, O; Mileyko, Y; Hao, Y; Belcher, H; Harer, J; Weitz, JS; Benfey, PN, Imaging and analysis platform for automatic phenotyping and trait ranking of plant root systems., Plant Physiology, vol. 152 no. 3 (March, 2010), pp. 1148-1157 [20107024], [doi]  [abs]
  49. Cohen-Steiner, D; Edelsbrunner, H; Harer, J; Mileyko, Y, Lipschitz functions have Lp-stable persistence, Foundations of Computational Mathematics, vol. 10 no. 2 (April, 2010), pp. 127-139, Springer Nature, ISSN 1615-3375 [available here], [doi]  [abs]
  50. Bini, G; Harer, J, Euler characteristics of moduli spaces of curves, Journal of the European Mathematical Society (2011), pp. 487-512, European Mathematical Publishing House [doi]
  51. Anjali S. Iyer-Pascuzzi, Christopher N. Topp, Jill T. Anderson, Cheng-Ruei Lee, Olga Symonova, Yuriy Mileyko, Taras Galkovsky, Ying Zheng, Randy Clark, Leon Kochian, Herbert Edelsbrunner, Joshua S. Weitz, Thomas Mitchell-Olds, John Harer and Philip N. Benfey, Quantitative Genetic Analysis of Root System Architecture in Rice Plant and Animal Genomes, XX Genome Conference (2011)
  52. Bendich, P; Harer, J, Persistent Intersection Homology, Foundations of Computational Mathematics, vol. 11 no. 3 (June, 2011), pp. 305-336, Springer Nature, ISSN 1615-3375 [doi]  [abs]
  53. Bendich, P; Galkovskyi, T; Harer, J, Improving homology estimates with random walks, Inverse Problems, vol. 27 no. 12 (December, 2011), pp. 124002-124002, IOP Publishing, ISSN 0266-5611 [doi]  [abs]
  54. Mileyko, Y; Mukherjee, S; Harer, J, Probability measures on the space of persistence diagrams, Inverse Problems, vol. 27 no. 12 (December, 2011), pp. 124007-124007, IOP Publishing, ISSN 0266-5611 [doi]  [abs] [author's comments]
  55. Munch, E; Shapiro, M; Harer, J, Failure filtrations for fenced sensor networks, International Journal of Robotics Research, vol. 31 no. 9 (2012), pp. 1044-1056, ISSN 0278-3649 [1109.6535v1], [doi]  [abs]
  56. Bendich, P; Harer, J; Harer, J, Persistent Homology Enhanced Dimension Reduction, Foundations of Computational Mathematics (2012)
  57. Michael Jenista, , Realizing Boolean Dynamics in Switching Networks, Siam Journal of Applied Dynamical Systems (2012), pp. 12  [abs]
  58. Galkovskyi, T; Mileyko, Y; Bucksch, A; Moore, B; Symonova, O; Price, CA; Topp, CN; Iyer-Pascuzzi, AS; Zurek, PR; Fang, S; Harer, J; Benfey, PN; Weitz, JS, GiA Roots: software for the high throughput analysis of plant root system architecture., Bmc Plant Biology, vol. 12 no. 116 (January, 2012), pp. 116 [22834569], [doi]  [abs]
  59. Turner, K; Mileyko, Y; Mukherjee, S; Harer, J, Fréchet Means for Distributions of Persistence diagrams (June, 2012) [1206.2790v2]  [abs]
  60. Munch, E; Shapiro, M; Harer, J, Failure filtrations for fenced sensor networks, International Journal of Robotics Research, vol. 31 no. 9 (August, 2012), pp. 1044-1056, SAGE Publications [1109.6535v1], [doi]  [abs]
  61. Topp, ; CN, ; Iyer-Pascuzzi, AS; Anderson, JT; Lee, C-R; Zurek, PR; Symonova, O; Zheng, Y; Bucksch, A; Milyeko, Y; Galkovskyi, T; Moore, BT; Harer, J; Edelsbrunner, H; Mitchell-Olds, T; Weitz, JS; Benfey, PN, 3-dimensional phenotyping of growing root systems and QTL mapping identifies core regions of the rice genome controlling root architecture, PNAS, vol. 110 (2013), pp. E1695-1704
  62. Christopher N Topp, Anjali S Iyer-Pascuzzi, Jill T Anderson, Cheng-Ruei Lee, Paul R Zurek, Olga Symonova, Ying Zheng, Alexander Bucksch, Yuriy Milyeko, Taras Galkovskyi, Brad Moore, John Harer, Herbert Edelsbrunner, Thomas Mitchell Olds, Joshua S Weitz, Philip N Benfey, 3-dimensional phenotyping of growing root systems combined with QTL mapping identifies core regions of the rice genome controlling root architecture, PNAS (2013) (http://www.pnas.org/content/early/2013/04/10/1304354110.abstract.)  [abs]
  63. Topp, CN; Iyer-Pascuzzi, AS; Anderson, JT; Lee, C-R; Zurek, PR; Symonova, O; Zheng, Y; Bucksch, A; Mileyko, Y; Galkovskyi, T; Moore, BT; Harer, J; Edelsbrunner, H; Mitchell-Olds, T; Weitz, JS; Benfey, PN, 3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture., Proceedings of the National Academy of Sciences of the United States of America, vol. 110 no. 18 (April, 2013), pp. E1695-E1704 [23580618], [doi]  [abs]
  64. Deckard, A; Anafi, RC; Hogenesch, JB; Haase, SB; Harer, J, Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data., Bioinformatics (Oxford, England), vol. 29 no. 24 (December, 2013), pp. 3174-3180 [doi]  [abs]
  65. Perea, JA; Harer, J, Sliding Windows and Persistence: An Application of Topological Methods to Signal Analysis, Foundations of Computational Mathematics, vol. 15 no. 3 (2014), pp. 799-838, ISSN 1615-3375 (http://arxiv.org/abs/1307.6188.) [doi]  [abs]
  66. Elizabeth Munch, Paul Bendich, Katharine Turner, Sayan Mukherjee, Jonathan Mattingly, John Harer, Probabilistic Fréchet Means and Statistics on Vineyards (2014) (http://arxiv.org/abs/1307.6530.)  [abs]
  67. Turner, K; Mileyko, Y; Mukherjee, S; Harer, J, Fréchet Means for Distributions of Persistence Diagrams, Discrete & Computational Geometry, vol. 52 no. 1 (January, 2014), pp. 44-70, Springer Nature, ISSN 0179-5376 [arXiv:1206.2790], [doi]  [abs]
  68. Bristow, SL; Leman, AR; Simmons Kovacs, LA; Deckard, A; Harer, J; Haase, SB, Checkpoints couple transcription network oscillator dynamics to cell-cycle progression., Genome Biology, vol. 15 no. 9 (September, 2014), pp. 446 [doi]  [abs]
  69. Farr, RS; Harer, JL; Fink, TMA, Easily repairable networks: reconnecting nodes after damage., Physical Review Letters, vol. 113 no. 13 (September, 2014), pp. 138701, ISSN 0031-9007 [doi]  [abs]
  70. Munch, E; Turner, K; Bendich, P; Mukherjee, S; Mattingly, J; Harer, J, Probabilistic Fréchet means for time varying persistence diagrams, Electronic Journal of Statistics, vol. 9 no. 1 (January, 2015), pp. 1173-1204, Institute of Mathematical Statistics [1307.6530v3], [doi]  [abs]
  71. Rouse, D; Watkins, A; Porter, D; Harer, J; Bendich, P; Strawn, N; Munch, E; Desena, J; Clarke, J; Gilbert, J; Chin, S; Newman, A, Feature-aided multiple hypothesis tracking using topological and statistical behavior classifiers, Smart Structures and Materials 2005: Active Materials: Behavior and Mechanics, vol. 9474 (January, 2015), SPIE, ISSN 10.1117/12.2179555, ISBN 9781628415902 [doi]  [abs]
  72. Perea, JA; Harer, J, Sliding Windows and Persistence: An Application of Topological Methods to Signal Analysis, Foundations of Computational Mathematics, vol. 15 no. 3 (June, 2015), pp. 799-838, Springer Nature [1307.6188v2], [doi]  [abs]
  73. Perea, JA; Deckard, A; Haase, SB; Harer, J, SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity in gene expression time series data., Bmc Bioinformatics, vol. 16 (August, 2015), pp. 257 [doi]  [abs]
  74. Bendich, P; Gasparovic, E; Harer, J; Izmailov, R; Ness, L, Multi-scale local shape analysis and feature selection in machine learning applications, Proceedings of the International Joint Conference on Neural Networks, vol. 2015-September (September, 2015), IEEE [doi]  [abs]
  75. Bendich, P; Gasparovic, E; Harer, J; Tralie, C, Geometric Models for Musical Audio Data, Proceedings of the 32st International Symposium on Computational Geometry (SOCG) (June, 2016)
  76. Bendich, P; Gasparovic, E; Harer, J; Tralie, C, Geometric models for musical audio data, Leibniz International Proceedings in Informatics, Lipics, vol. 51 (June, 2016), pp. 65.1-65.5, ISBN 9783959770095 [doi]  [abs]
  77. McGoff, KA; Guo, X; Deckard, A; Kelliher, CM; Leman, AR; Francey, LJ; Hogenesch, JB; Haase, SB; Harer, JL, The Local Edge Machine: inference of dynamic models of gene regulation., Genome Biology, vol. 17 no. 1 (October, 2016), pp. 214 [doi]  [abs]
  78. Bendich, P; Chin, SP; Clark, J; DeSena, J; Harer, J; Munch, E; Newman, A; Porter, D; Rouse, D; Strawn, N; Watkins, A, Topological and statistical behavior classifiers for tracking applications, Ieee Transactions on Aerospace and Electronic Systems, vol. 52 no. 6 (December, 2016), pp. 2644-2661, Institute of Electrical and Electronics Engineers (IEEE) [doi]  [abs]
  79. Hughes, ME; Abruzzi, KC; Allada, R; Anafi, R; Arpat, AB; Asher, G; Baldi, P; de Bekker, C; Bell-Pedersen, D; Blau, J; Brown, S; Ceriani, MF; Chen, Z; Chiu, JC; Cox, J; Crowell, AM; DeBruyne, JP; Dijk, D-J; DiTacchio, L; Doyle, FJ; Duffield, GE; Dunlap, JC; Eckel-Mahan, K; Esser, KA; FitzGerald, GA; Forger, DB; Francey, LJ; Fu, Y-H; Gachon, F; Gatfield, D; de Goede, P; Golden, SS; Green, C; Harer, J; Harmer, S; Haspel, J; Hastings, MH; Herzel, H; Herzog, ED; Hoffmann, C; Hong, C; Hughey, JJ; Hurley, JM; de la Iglesia, HO; Johnson, C; Kay, SA; Koike, N; Kornacker, K; Kramer, A; Lamia, K; Leise, T; Lewis, SA; Li, J; Li, X; Liu, AC; Loros, JJ; Martino, TA; Menet, JS; Merrow, M; Millar, AJ; Mockler, T; Naef, F; Nagoshi, E; Nitabach, MN; Olmedo, M; Nusinow, DA; Ptáček, LJ; Rand, D; Reddy, AB; Robles, MS; Roenneberg, T; Rosbash, M; Ruben, MD; Rund, SSC; Sancar, A; Sassone-Corsi, P; Sehgal, A; Sherrill-Mix, S; Skene, DJ; Storch, K-F; Takahashi, JS; Ueda, HR; Wang, H; Weitz, C; Westermark, PO; Wijnen, H; Xu, Y; Wu, G; Yoo, S-H; Young, M; Zhang, EE; Zielinski, T; Hogenesch, JB, Guidelines for Genome-Scale Analysis of Biological Rhythms., Journal of Biological Rhythms, vol. 32 no. 5 (October, 2017), pp. 380-393 [doi]  [abs]
  80. Tralie, CJ; Smith, A; Borggren, N; Hineman, J; Bendich, P; Zulch, P; Harer, J, Geometric cross-modal comparison of heterogeneous sensor data, 2018 Ieee Aerospace Conference (March, 2018), IEEE [doi]  [abs]
  81. Garagić, D; Peskoe, J; Liu, F; Claffey, MS; Bendich, P; Hineman, J; Borggren, N; Harer, J; Zulch, P; Rhodes, BJ, Upstream fusion of multiple sensing modalities using machine learning and topological analysis: An initial exploration, Ieee Aerospace Conference Proceedings, vol. 2018-March (June, 2018), pp. 1-8, IEEE, ISBN 9781538620144 [doi]  [abs]

Papers Accepted

  1. E. Munch, P. Bendich, K. Turner, S. Mukherjee, J. Mattingly and J. Harer, Probabilistic Frechet Means and Statistics on Vineyards, Foundations of Computational Math (2014)  [abs]

Papers Submitted

  1. Mehak Aziz, Siobhan M. Brady, David Orlando, Appu Kuruvilla, Scott Spillias, José R. Dinneny, Terri A. Long, John Harer, Uwe Ohler, Philip N. Benfey, Gene Expression Clustering Analysis: How to Choose the Best Parameters and Clustering Algorithm (2008)  [abs]
  2. P. Bendich and J. Harer, Elevation for singular spaces using persistent intersection homology (2009)
  3. J. Perea, A. Deckard, S. Haase and J. Harer, Applications of SWiPerS to the discovery of periodic genes (2013)
  4. Sara Bristow, Laura A. Simmons Kovacs, Anastasia Deckard, John Harer, Steven B. Haase, Checkpoint Pathways Couple the CDK-Independent Transcriptional Oscillations to Cell Cycle Progression (2013)  [abs]
  5. J. Perea, A. Deckard, S. Haase and J. Harer, Sliding Windows and 1-Persistence Scoring; Discovering Periodicity in Gene Expression Time Series Data, BMC Bioinformatics (2014)  [abs]
  6. K.A. McGoff, X. Guo, A. Deckard, A.R. Leman, C.M. Kelliher, S.B. Haase, and J.L. Harer, The Local Edge Machine: Inference of dynamic models of gene regulation, Nature Methods (2014)  [abs]
  7. P. Bendich, S. Chin, J. Clarke, J. deSena, J. Harer, E. Munch, A. Newman, D. Porter, D. Rouse, N. Strawn, and A. Watkins, Topological and Statistical Behavior Classifiers for Tracking Applications, IEEE Trans. on Aerospace and Electronic Systems (2014)  [abs]
  8. P. Bendich, Jacob Harer and John Harer, A Persistent Homology Based Geodesic Distance Estimator, Journal of Machine Learning Research (2014)  [author's comments]

Preprints

  1. John Harer, The Euler Characteristic of the Deligne-Mumford Compactification of the Moduli Space of Curves, 1996 , preprint 1996
  2. John Harer, Algorithms for Enumerating Triangulations and Other Maps in Surfaces, 1998 , preprint 1998
  3. John Harer, An Alternative Approach to Trap Design for Vibratory Bowl Feeders, 1998 , preprint 1998

Other

  1. with H. Edelsbrunner, Persistent Morse Complex Segmentation of a 3-Manifold, Raindrop Geomagic Technical Report, vol. 066 (2004)  [abs] [author's comments]

 

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