Department of Mathematics
 Search | Help | Login | pdf version | printable version

Math @ Duke





.......................

.......................

Webpage

Mathematics Grad: All Publications (in the database)

List most recent publications in the database.    :chronological  alphabetical  combined listing:
%% Aguado, Alex   
@misc{fds208064,
   Author = {Alejandro Aguado},
   Title = {A short note on mapping cylinders},
   Journal = {arXiv:1206.1277v2 [math.AT]},
   Year = {2012},
   Month = {June},
   Key = {fds208064}
}

@misc{fds204392,
   Author = {Alejandro Aguado},
   Title = {On the cardinality of the Kuratowski family},
   Journal = {Mathematics Magazine (Problem 1888)},
   Volume = {85 (1) & 86 (1)},
   Year = {2012},
   Month = {February},
   url = {http://www.jstor.org/stable/10.4169/math.mag.85.1.61},
   Key = {fds204392}
}

@misc{fds208066,
   Author = {Alejandro Aguado},
   Title = {On group designs and the social golfer problem},
   Year = {2012},
   Key = {fds208066}
}

@article{fds146627,
   Author = {Alejandro Aguado and Saad I. El-Zanati},
   Title = {On σ-labeling the union of three cycles.},
   Journal = {Journal of Combinatorial Mathematics and Combinatorial
             Computing},
   Volume = {64},
   Pages = {33-48},
   Year = {2008},
   MRNUMBER = {MR2389065},
   url = {http://www.ams.org/mathscinet-getitem?mr=2389065},
   Key = {fds146627}
}

@article{fds146626,
   Author = {Alejandro Aguado and Saad I. El-Zanati and et al.},
   Title = {On ρ-labeling the union of three cycles},
   Journal = {The Australasian Journal of Combinatorics},
   Volume = {37},
   Pages = {155-170},
   Year = {2007},
   MRNUMBER = {MR2284379 (2007k:05190)},
   url = {http://www.ams.org/mathscinet-getitem?mr=2284379},
   Key = {fds146626}
}

@misc{fds146628,
   Author = {Alejandro Aguado},
   Title = {Cantor Sets, Antoine's Necklace and p-Adic
             Numbers},
   Series = {Undergraduate Thesis (unpublished)},
   Publisher = {22 figures, 48 pages},
   Year = {2006},
   Key = {fds146628}
}

@article{fds146625,
   Author = {Alejandro Aguado},
   Title = {A 10 days solution to the social golfer problem},
   Series = {Math games: Social Golfer problem},
   Publisher = {MAA Online},
   Editor = {Ed Pegg Jr.},
   Year = {2004},
   url = {http://www.maa.org/editorial/mathgames/mathgames_08_14_07.html},
   Key = {fds146625}
}


%% Ambrose, David M.   
@article{fds10435,
   Author = {David M. Ambrose},
   Title = {Well-posedness of vortex sheets with surface
             tension},
   Journal = {SIAM J. Math. Analysis},
   Key = {fds10435}
}


%% An, Chen   
@article{fds355088,
   Author = {An, C},
   Title = {ℓ-torsion in class groups of certain families of
             D4-quartic fields},
   Journal = {Journal De Theorie Des Nombres De Bordeaux},
   Volume = {32},
   Number = {1},
   Pages = {1-23},
   Publisher = {Universite de Bordeaux},
   Editor = {Wood, M},
   Year = {2020},
   Month = {August},
   Key = {fds355088}
}


%% Arya, Shreya   
@article{fds371223,
   Author = {Arya, S and Boissonnat, J-D and Dutta, K and Lotz,
             M},
   Title = {Dimensionality reduction for k-distance applied to
             persistent homology},
   Journal = {Journal of Applied and Computational Topology},
   Volume = {5},
   Number = {4},
   Pages = {671-691},
   Publisher = {Springer Science and Business Media LLC},
   Year = {2021},
   Month = {December},
   url = {http://dx.doi.org/10.1007/s41468-021-00079-x},
   Abstract = {<jats:title>Abstract</jats:title><jats:p>Given a set
             <jats:italic>P</jats:italic> of <jats:italic>n</jats:italic>
             points and a constant <jats:italic>k</jats:italic>, we are
             interested in computing the persistent homology of the Čech
             filtration of <jats:italic>P</jats:italic> for the
             <jats:italic>k</jats:italic>-distance, and investigate the
             effectiveness of dimensionality reduction for this problem,
             answering an open question of Sheehy (The persistent
             homology of distance functions under random projection. In
             Cheng, Devillers (eds), 30th Annual Symposium on
             Computational Geometry, SOCG’14, Kyoto, Japan, June
             08–11, p 328, ACM, 2014). We show that
             <jats:italic>any</jats:italic> linear transformation that
             preserves pairwise distances up to a <jats:inline-formula><jats:alternatives><jats:tex-math>$$(1\pm
             {\varepsilon })$$</jats:tex-math>?? <mml:mrow>
             <mml:mo>(</mml:mo> <mml:mn>1</mml:mn> <mml:mo>±</mml:mo>
             <mml:mi>ε</mml:mi> <mml:mo>)</mml:mo> </mml:mrow>
             </mml:math></jats:alternatives></jats:inline-formula>
             multiplicative factor, must preserve the persistent homology
             of the Čech filtration up to a factor of
             <jats:inline-formula><jats:alternatives><jats:tex-math>$$(1-{\varepsilon
             })^{-1}$$</jats:tex-math>?? <mml:msup> <mml:mrow>
             <mml:mo>(</mml:mo> <mml:mn>1</mml:mn> <mml:mo>-</mml:mo>
             <mml:mi>ε</mml:mi> <mml:mo>)</mml:mo> </mml:mrow>
             <mml:mrow> <mml:mo>-</mml:mo> <mml:mn>1</mml:mn> </mml:mrow>
             </mml:msup> </mml:math></jats:alternatives></jats:inline-formula>.
             Our results also show that the Vietoris-Rips and Delaunay
             filtrations for the <jats:italic>k</jats:italic>-distance,
             as well as the Čech filtration for the approximate
             <jats:italic>k</jats:italic>-distance of Buchet et al. [J
             Comput Geom, 58:70–96, 2016] are preserved up to a
             <jats:inline-formula><jats:alternatives><jats:tex-math>$$(1\pm
             {\varepsilon })$$</jats:tex-math>?? <mml:mrow>
             <mml:mo>(</mml:mo> <mml:mn>1</mml:mn> <mml:mo>±</mml:mo>
             <mml:mi>ε</mml:mi> <mml:mo>)</mml:mo> </mml:mrow>
             </mml:math></jats:alternatives></jats:inline-formula>
             factor. We also prove extensions of our main theorem, for
             point sets (<jats:italic>i</jats:italic>) lying in a region
             of bounded Gaussian width or (<jats:italic>ii</jats:italic>)
             on a low-dimensional submanifold, obtaining embeddings
             having the dimension bounds of Lotz (Proc R Soc A Math Phys
             Eng Sci, 475(2230):20190081, 2019) and Clarkson (Tighter
             bounds for random projections of manifolds. In Teillaud (ed)
             Proceedings of the 24th ACM Symposium on Computational Geom-
             etry, College Park, MD, USA, June 9–11, pp 39–48, ACM,
             2008) respectively. Our results also work in the
             <jats:italic>terminal dimensionality reduction</jats:italic>
             setting, where the distance of any point in the original
             ambient space, to any point in <jats:italic>P</jats:italic>,
             needs to be approximately preserved. </jats:p>},
   Doi = {10.1007/s41468-021-00079-x},
   Key = {fds371223}
}


%% Beckman, Erin   
@article{fds343710,
   Author = {Beckman, E and Frank, N and Jiang, Y and Junge, M and Tang,
             S},
   Title = {The frog model on trees with drift},
   Journal = {Electronic Communications in Probability},
   Volume = {24},
   Publisher = {Institute of Mathematical Statistics},
   Year = {2019},
   Month = {January},
   url = {http://dx.doi.org/10.1214/19-ECP235},
   Abstract = {© 2019, Institute of Mathematical Statistics. All rights
             reserved. We provide a uniform upper bound on the minimal
             drift so that the one-per-site frog model on a d-ary tree is
             recurrent. To do this, we introduce a subprocess that
             couples across trees with different degrees. Finding
             couplings for frog models on nested sequences of graphs is
             known to be difficult. The upper bound comes from combining
             the coupling with a new, simpler proof that the frog model
             on a binary tree is recurrent when the drift is sufficiently
             strong. Additionally, we describe a coupling between frog
             models on trees for which the degree of the smaller tree
             divides that of the larger one. This implies that the
             critical drift has a limit as d tends to infinity along
             certain subsequences.},
   Doi = {10.1214/19-ECP235},
   Key = {fds343710}
}

@article{fds339575,
   Author = {Beckman, E and Dinan, E and Durrett, R and Huo, R and Junge,
             M},
   Title = {Asymptotic behavior of the brownian frog
             model},
   Journal = {Electronic Journal of Probability},
   Volume = {23},
   Publisher = {Institute of Mathematical Statistics},
   Year = {2018},
   Month = {January},
   url = {http://dx.doi.org/10.1214/18-EJP215},
   Abstract = {© 2018, University of Washington. All rights reserved. We
             introduce an extension of the frog model to Euclidean space
             and prove properties for the spread of active particles. Fix
             r>0 and place a particle at each point x of a unit intensity
             Poisson point process P⊆ℝd−B(0,r). Around each point
             in P, put a ball of radius r. A particle at the origin
             performs Brownian motion. When it hits the ball around x for
             some x ∈ P, new particles begin independent Brownian
             motions from the centers of the balls in the cluster
             containing x. Subsequent visits to the cluster do nothing.
             This waking process continues indefinitely. For r smaller
             than the critical threshold of continuum percolation, we
             show that the set of activated points in P approximates a
             linearly expanding ball. Moreover, in any fixed ball the set
             of active particles converges to a unit intensity Poisson
             point process.},
   Doi = {10.1214/18-EJP215},
   Key = {fds339575}
}

@article{fds340893,
   Author = {Cristali, I and Ranjan, V and Steinberg, J and Beckman, E and Durrett,
             R and Junge, M and Nolen, J},
   Title = {Block size in geometric(P)-biased permutations},
   Journal = {Electronic Communications in Probability},
   Volume = {23},
   Year = {2018},
   Month = {January},
   url = {http://dx.doi.org/10.1214/18-ECP182},
   Abstract = {© 2018, University of Washington. All rights reserved. Fix
             a probability distribution p = (p1, p2, …) on the positive
             integers. The first block in a p-biased permutation can be
             visualized in terms of raindrops that land at each positive
             integer j with probability pj. It is the first point K so
             that all sites in [1, K] are wet and all sites in (K, ∞)
             are dry. For the geometric distribution pj = p(1 − p)j−1
             we show that p log K converges in probability to an explicit
             constant as p tends to 0. Additionally, we prove that if p
             has a stretch exponential distribution, then K is infinite
             with positive probability.},
   Doi = {10.1214/18-ECP182},
   Key = {fds340893}
}


%% Belov, Sergey   
@article{fds31885,
   Author = {Sergei Belov and Alexei Rybkin},
   Title = {On the existence of WKB-type asymptotics for the generalized
             eigenvectors of discrete string operators},
   Journal = {Bull. London Math. Soc.},
   Volume = {36},
   Number = {2},
   Pages = {241-251},
   Year = {2004},
   MRNUMBER = {2026899},
   url = {http://www.ams.org/mathscinet-getitem?mr=2026899},
   Key = {fds31885}
}

@article{fds31887,
   Author = {S.M. Belov and N.B. Avdonina and Z. Felfli and M. Marletta and A. Z.
             Msezane and S.N. Naboko},
   Title = {Semiclassical approach to Regge poles trajectories
             calculations for nonsingular potentials: Thomas-Fermi
             type},
   Journal = {J. Phys. A},
   Volume = {37},
   Number = {27},
   Pages = {6943–6954},
   Year = {2004},
   MRNUMBER = {2078324},
   url = {http://www.ams.org/mathscinet-getitem?mr=2078324},
   Key = {fds31887}
}

@article{fds31884,
   Author = {S.M. Belov and A.V. Rybkin},
   Title = {Higher order trace formulas of the Buslaev-Faddeev type for
             the half-line Schrodinger operator with long-range
             potentials},
   Journal = {J. Math. Phys.},
   Volume = {44},
   Number = {7},
   Pages = {2748–2761},
   Year = {2003},
   MRNUMBER = {1982789},
   url = {http://www.ams.org/mathscinet-getitem?mr=1982789},
   Key = {fds31884}
}

@article{fds31883,
   Author = {N.B. Avdonina and S. Belov and Z. Felfli and A.Z. Msezane and S.N.
             Naboko},
   Title = {Semiclassical approach for calculating Regge-pole
             trajectories for singular potentials},
   Journal = {Phys. Rev. A (3)},
   Volume = {66},
   Number = {2},
   Pages = {022713},
   Year = {2002},
   MRNUMBER = {1955150},
   url = {http://link.aps.org/abstract/PRA/v66/e022713},
   Key = {fds31883}
}


%% Cain, John   
@misc{fds32393,
   Author = {D.G. Schaeffer and J.W. Cain and D.J. Gauthier and S.S. Kalb and W.
             Krassowska, R.A. Oliver and E.G. Tolkacheva and W.
             Ying},
   Title = {An ionically based mapping model with memory for cardiac
             restitution},
   Year = {2005},
   Month = {February},
   Key = {fds32393}
}

@article{fds38248,
   Author = {J.W. Cain and D.G. Schaeffer},
   Title = {Two-term asymptotic approximation of a cardiac restitution
             curve},
   Year = {2005},
   Key = {fds38248}
}

@misc{fds36954,
   Author = {J. Cain},
   Title = {Issues in the one-dimensional dynamics of a paced cardiac
             fiber},
   Journal = {Ph.D. Dissertation, Duke University},
   Year = {2005},
   Key = {fds36954}
}

@misc{fds26554,
   Author = {J.W. Cain and E.G. Tolkacheva and D.G. Schaeffer and D.J.
             Gauthier},
   Title = {Rate-dependent waveback velocity of cardiac action
             potentials in a one-dimensional cable},
   Journal = {International Conference for Mathematics in Biology and
             Medicine: Annual Meeting for the Society for Mathematical
             Biology},
   Year = {2004},
   Month = {July},
   Key = {fds26554}
}

@article{fds26048,
   Author = {D.G. Schaeffer and J.W. Cain and D.J. Gauthier and S.S. Kalb and W.
             Krassowska, R.A. Oliver and E.G. Tolkacheva},
   Title = {An ionically based mapping model with memory for cardiac
             restitution},
   Journal = {Bull. Math. Bio.},
   Year = {2004},
   Key = {fds26048}
}

@article{fds30212,
   Author = {J.W. Cain and E.G. Tolkacheva and D.G. Schaeffer and D.J.
             Gauthier},
   Title = {Rate-dependent propagation of cardiac action potentials in a
             one-dimensional fiber},
   Journal = {Phys. Rev. E.},
   Volume = {70},
   Number = {6},
   Pages = {061906},
   Year = {2004},
   Key = {fds30212}
}

@misc{fds26555,
   Author = {J.W. Cain},
   Title = {Simulating discordant alternans with a two-current
             model},
   Journal = {International School on Biomathematics, Bioengineering and
             Clinical Aspects of Blood Flow, MSRI},
   Year = {2002},
   Month = {August},
   Key = {fds26555}
}


%% Cao, Yu   
@article{fds344622,
   Author = {Cao, Y and Lu, J and Lu, Y},
   Title = {Exponential Decay of Rényi Divergence Under Fokker–Planck
             Equations},
   Journal = {Journal of Statistical Physics},
   Volume = {176},
   Number = {5},
   Pages = {1172-1184},
   Year = {2019},
   Month = {September},
   url = {http://dx.doi.org/10.1007/s10955-019-02339-8},
   Abstract = {© 2019, Springer Science+Business Media, LLC, part of
             Springer Nature. We prove the exponential convergence to the
             equilibrium, quantified by Rényi divergence, of the
             solution of the Fokker–Planck equation with drift given by
             the gradient of a strictly convex potential. This extends
             the classical exponential decay result on the relative
             entropy for the same equation.},
   Doi = {10.1007/s10955-019-02339-8},
   Key = {fds344622}
}

@article{fds343501,
   Author = {Cao, Y and Lu, J and Lu, Y},
   Title = {Gradient flow structure and exponential decay of the
             sandwiched Rényi divergence for primitive Lindblad
             equations with GNS-detailed balance},
   Journal = {Journal of Mathematical Physics},
   Volume = {60},
   Number = {5},
   Pages = {052202-052202},
   Publisher = {AIP Publishing},
   Year = {2019},
   Month = {May},
   url = {http://dx.doi.org/10.1063/1.5083065},
   Abstract = {© 2019 Author(s). We study the entropy production of the
             sandwiched Rényi divergence under the primitive Lindblad
             equation with Gel'fand-Naimark-Segal-detailed balance. We
             prove that the Lindblad equation can be identified as the
             gradient flow of the sandwiched Rényi divergence of any
             order α ∈ (0, ∞). This extends a previous result by
             Carlen and Maas [J. Funct. Anal. 273(5), 1810-1869 (2017)]
             for the quantum relative entropy (i.e., α = 1). Moreover,
             we show that the sandwiched Rényi divergence of any order
             α ∈ (0, ∞) decays exponentially fast under the time
             evolution of such a Lindblad equation.},
   Doi = {10.1063/1.5083065},
   Key = {fds343501}
}

@article{fds337049,
   Author = {Cao, Y and Lu, J},
   Title = {Stochastic dynamical low-rank approximation
             method},
   Journal = {Journal of Computational Physics},
   Volume = {372},
   Pages = {564-586},
   Publisher = {Elsevier BV},
   Year = {2018},
   Month = {November},
   url = {http://dx.doi.org/10.1016/j.jcp.2018.06.058},
   Abstract = {© 2018 Elsevier Inc. In this paper, we extend the dynamical
             low-rank approximation method to the space of finite signed
             measures. Under this framework, we derive stochastic
             low-rank dynamics for stochastic differential equations
             (SDEs) coming from classical stochastic dynamics or
             unraveling of Lindblad quantum master equations. We justify
             the proposed method by error analysis and also numerical
             examples for applications in solving high-dimensional SDE,
             stochastic Burgers' equation, and high-dimensional Lindblad
             equation.},
   Doi = {10.1016/j.jcp.2018.06.058},
   Key = {fds337049}
}

@article{fds337050,
   Author = {Cao, Y and Lu, J},
   Title = {Lindblad equation and its semiclassical limit of the
             Anderson-Holstein model},
   Journal = {Journal of Mathematical Physics},
   Volume = {58},
   Number = {12},
   Pages = {122105-122105},
   Publisher = {AIP Publishing},
   Year = {2017},
   Month = {December},
   url = {http://dx.doi.org/10.1063/1.4993431},
   Abstract = {© 2017 Author(s). For multi-level open quantum systems, the
             interaction between different levels could pose a challenge
             to understand the quantum system both analytically and
             numerically. In this work, we study the approximation of the
             dynamics of the Anderson-Holstein model, as a model of the
             multi-level open quantum system, by Redfield and Lindblad
             equations. Both equations have a desirable property that if
             the density operators for different levels are diagonal
             initially, they remain to be diagonal for any time. Thanks
             to this nice property, the semiclassical limit of both
             Redfield and Lindblad equations could be derived explicitly;
             the resulting classical master equations share similar
             structures of transport and hopping terms. The Redfield and
             Lindblad equations are also compared from the angle of time
             dependent perturbation theory.},
   Doi = {10.1063/1.4993431},
   Key = {fds337050}
}

@article{fds337051,
   Author = {Cao, Y and Lin, L and Zhou, X},
   Title = {Explore stochastic instabilities of periodic points by
             transition path theory},
   Journal = {Journal of Nonlinear Science},
   Volume = {26},
   Number = {3},
   Pages = {755-786},
   Publisher = {Springer Nature},
   Year = {2016},
   Month = {March},
   url = {http://dx.doi.org/10.1007/s00332-016-9289-6},
   Abstract = {© Springer Science+Business Media New York 2016. We
             consider the noise-induced transitions from a linearly
             stable periodic orbit consisting of T periodic points in
             randomly perturbed discrete logistic map. Traditional large
             deviation theory and asymptotic analysis at small noise
             limit cannot distinguish the quantitative difference in
             noise-induced stochastic instabilities among the T periodic
             points. To attack this problem, we generalize the transition
             path theory to the discrete-time continuous-space stochastic
             process. In our first criterion to quantify the relative
             instability among T periodic points, we use the distribution
             of the last passage location related to the transitions from
             the whole periodic orbit to a prescribed disjoint set. This
             distribution is related to individual contributions to the
             transition rate from each periodic points. The second
             criterion is based on the competency of the transition paths
             associated with each periodic point. Both criteria utilize
             the reactive probability current in the transition path
             theory. Our numerical results for the logistic map reveal
             the transition mechanism of escaping from the stable
             periodic orbit and identify which periodic point is more
             prone to lose stability so as to make successful transitions
             under random perturbations.},
   Doi = {10.1007/s00332-016-9289-6},
   Key = {fds337051}
}


%% Cruz, Joshua   
@article{fds341431,
   Author = {Cruz, J and Giusti, C and Itskov, V and Kronholm,
             B},
   Title = {On Open and Closed Convex Codes},
   Journal = {Discrete & Computational Geometry},
   Volume = {61},
   Number = {2},
   Pages = {247-270},
   Publisher = {Springer Science and Business Media LLC},
   Year = {2019},
   Month = {March},
   url = {http://dx.doi.org/10.1007/s00454-018-00050-1},
   Doi = {10.1007/s00454-018-00050-1},
   Key = {fds341431}
}


%% Dai, Shu   
@article{fds150138,
   Author = {S. Dai and D. G. Schaeffer},
   Title = {Spectrum of a linearized amplitude equation for alternans in
             a cardiac fiber},
   Journal = {SIAM J. Appl. Math.},
   Year = {2008},
   Abstract = {Under rapid periodic pacing, cardiac cells typically undergo
             a period-doubling bifurcation in which action potentials of
             short and long duration alternate with one another. If these
             action potentials propagate in a fiber, the short-long
             alternation may suffer reversals of phase at various points
             along the fiber, a phenomenon called (spatially) discordant
             alternans. Either stationary or moving patterns are
             possible. Using a weak approximation, Echebarria and Karma
             proposed an equation to describe the spatiotemporal dynamics
             of small-amplitude alternans in a class of simple cardiac
             models, and they showed that an instability in this equation
             predicts the spontaneous formation of discordant alternans.
             To study the bifurcation, they computed the spectrum of the
             relevant linearized operator numerically, supplemented with
             partial analytical results. In the present paper we
             calculate this spectrum with purely analytical methods in
             two cases where a small parameter may be exploited: (i)
             small dispersion or (ii) a long fiber. From this analysis we
             estimate the parameter ranges in which the phase reversals
             of discordant alternans are stationary or
             moving.},
   Key = {fds150138}
}

@article{fds150136,
   Author = {S. Dai and D. G. Schaeffer},
   Title = {Bifurcations in a modulation equation for alternans in a
             cardiac fiber},
   Journal = {Math. Modelling and Num. Analysis},
   Year = {2008},
   Abstract = {While alternans in a single cardiac cell appears through a
             simple period-doubling bifurcation, in extended tissue the
             exact nature of the bifurcation is unclear. In particular,
             the phase of alternans can exhibit wave-like spatial
             dependence, either stationary or traveling, which is known
             as discordant alternans. We study these phenomena in simple
             cardiac models through a modulation equation proposed by
             Echebarria-Karma. As shown in our previous paper, the zero
             solution of their equation may lose stability, as the pacing
             rate is increased, through either a Hopf or steady-state
             bifurcation. Which bifurcation occurs first depends on
             parameters in the equation, and for one critical case both
             modes bifurcate together at a degenerate (codimension 2)
             bifurcation. For parameters close to the degenerate case, we
             investigate the competition between modes, both numerically
             and analytically. We find that at sufficiently rapid pacing
             (but assuming a 1:1 response is maintained), steady patterns
             always emerge as the only stable solution. However, in the
             parameter range where Hopf bifurcation occurs first, the
             evolution from periodic solution (just after the
             bifurcation) to the eventual standing wave solution occurs
             through an interesting series of secondary
             bifurcations.},
   Key = {fds150136}
}


%% Diaz, Humberto   
@article{fds299458,
   Author = {H. Diaz},
   Title = {The motive of a smooth Theta divisor},
   Year = {2015},
   Key = {fds299458}
}

@article{fds227122,
   Author = {H. Diaz},
   Title = {The motive of the Fano surface of lines},
   Year = {2015},
   Key = {fds227122}
}


%% Duncan, William   
@article{fds346636,
   Author = {Duncan, W and Best, J and Golubitsky, M and Nijhout, HF and Reed,
             M},
   Title = {Homeostasis despite instability.},
   Journal = {Mathematical Biosciences},
   Volume = {300},
   Pages = {130-137},
   Year = {2018},
   Month = {June},
   url = {http://dx.doi.org/10.1016/j.mbs.2018.03.025},
   Abstract = {We have shown previously that different homeostatic
             mechanisms in biochemistry create input-output curves with a
             "chair" shape. At equilibrium, for intermediate values of a
             parameter (often an input), a variable, Z, changes very
             little (the homeostatic plateau), but for low and high
             values of the parameter, Z changes rapidly (escape from
             homeostasis). In all cases previously studied, the steady
             state was stable for each value of the input parameter. Here
             we show that, for the feedback inhibition motif, stability
             may be lost through a Hopf bifurcation on the homeostatic
             plateau and then regained by another Hopf bifurcation. If
             the limit cycle oscillations are relatively small in the
             unstable interval, then the variable Z maintains homeostasis
             despite the instability. We show that the existence of an
             input interval in which there are oscillations, the length
             of the interval, and the size of the oscillations depend in
             interesting and complicated ways on the properties of the
             inhibition function, f, the length of the chain, and the
             size of a leakage parameter.},
   Doi = {10.1016/j.mbs.2018.03.025},
   Key = {fds346636}
}


%% Feist, Andrew   
@article{fds13550,
   Author = {Andrew Feist},
   Title = {Fun With the Sigma-Function},
   Journal = {Missouri Journal of Mathematical Sciences},
   Volume = {15},
   Number = {3},
   Pages = {173-177},
   Year = {2003},
   Month = {Fall},
   url = {http://www.math-cs.cmsu.edu/~mjms/mjms.html},
   Key = {fds13550}
}

@article{fds10468,
   Author = {McCune, Veroff and Fitelson, Harris and Feist, Wos},
   Title = {Short Single Axioms for Boolean Algebra},
   Journal = {Journal of Automated Reasoning, vol. 29, (2002), pp.
             1-16},
   Year = {2002},
   Month = {July},
   MRNUMBER = {2003i:68119},
   url = {http://www.kluweronline.com/issn/0168-7433},
   Abstract = {We present short single equational axioms for Boolean
             algebra in terms of disjunction and negation and in terms of
             the Sheffer stroke. Previously known single axioms for these
             theories are much longer than the ones we present. We show
             that there is no shorter axiom in terms of the Sheffer
             stroke. Automated deduction techniques were used in several
             parts of the work.},
   Key = {fds10468}
}

@article{fds9787,
   Author = {Andrew Feist},
   Title = {On the Density of Birthday Sets},
   Journal = {The Pentagon, vol. 60 (2000), no. 1, pp.
             31-35},
   Key = {fds9787}
}


%% Fox, Daniel   
@article{fds31610,
   Author = {Jennie Traschen and Daniel Fox},
   Title = {Tension perturbations of black brane spacetimes},
   Journal = {Class. Quantum Grav.},
   Volume = {21},
   Pages = {289-306},
   Year = {2004},
   Abstract = {Abstract. We consider black brane spacetimes that have at
             least one spatial translation Killing field that is tangent
             to the brane. A new parameter, the tension of a spacetime,
             is defined. The tension parameter is associated with spatial
             translations in much the same way that the ADM mass is
             associated with the time translation Killing field. In this
             work, we explore the implications of the spatial translation
             symmetry for small perturbations around a background black
             brane. For static-charged black branes we derive a law which
             relates the tension perturbation to the surface gravity
             times the change in the horizon area, plus terms that
             involve variations in the charges and currents. We find that
             as a black brane evaporates the tension decreases. We also
             give a simple derivation of a first law for black brane
             spacetimes. These constructions hold when the background
             stress–energy is governed by a Hamiltonian, and the
             results include arbitrary perturbative stress–energy
             sources.},
   Key = {fds31610}
}


%% Gjoneski, Oliver   
@misc{fds182407,
   Author = {O. Gjoneski},
   Title = {Three Variable Period Polynomials associated to Cusp
             Forms},
   Journal = {in preparation},
   Year = {2010},
   Key = {fds182407}
}

@unpublished{author = "Oliver Gjoneski",
   Author = {O. Gjoneski},
   Title = {Cohomology of GL4(Z)},
   Journal = {in preparation},
   Year = {2010},
   Key = {author = "Oliver Gjoneski"}
}

@misc{fds182411,
   Author = {O. Gjoneski},
   Title = {Degenerate Tilings and Invariant Spines},
   Journal = {in preparation},
   Year = {2010},
   Key = {fds182411}
}

@misc{fds182410,
   Author = {O. Gjoneski and K. Smith},
   Title = {On the nonexistence of a (176, 50, 14) difference
             set},
   Journal = {unpublished manuscript},
   Year = {2005},
   Key = {fds182410}
}


%% Goetz, Andrew   
@article{fds226222,
   Author = {A. S. Goetz},
   Title = {Tully-Fisher Scalings and Boundary Conditions for Wave Dark
             Matter},
   Year = {2015},
   Month = {February},
   url = {http://arxiv.org/abs/1502.04976},
   Abstract = {We investigate a theory of dark matter called wave dark
             matter, also known as scalar field dark matter (SFDM) and
             boson star dark matter or Bose-Einstein condensate (BEC)
             dark matter (also see axion dark matter), and its relation
             to the Tully-Fisher relation. We exhibit two boundary
             conditions that give rise to Tully-Fisher-like relations for
             spherically symmetric static wave dark matter halos: (BC1)
             Fixing a length scale at the outer edge of wave dark matter
             halos gives rise to a Tully-Fisher-like relation of the form
             M/v^4=const. (BC2) Fixing the density of dark matter at the
             outer edge of wave dark matter halos gives rise to a
             Tully-Fisher-like relation of the form M/v^3.4=const.},
   Key = {fds226222}
}

@article{fds225134,
   Author = {H.L. Bray and A.S. Goetz},
   Title = {Wave Dark Matter and the Tully-Fisher Relation},
   Year = {2014},
   Month = {October},
   url = {http://arxiv.org/abs/1409.7347},
   Abstract = {We investigate a theory of dark matter called wave dark
             matter, also known as scalar field dark matter (SFDM) and
             boson star dark matter or Bose-Einstein condensate (BEC)
             dark matter, in spherical symmetry and its relation to the
             Tully-Fisher relation. We show that fixing the oscillation
             frequency of wave dark matter near the edge of dark galactic
             halos implies a Tully-Fisher-like relation for those halos.
             We then describe how this boundary condition, which is
             roughly equivalent to fixing the half-length of the
             exponentially decaying tail of each galactic halo mass
             profile, may yield testable predictions for this theory of
             dark matter.},
   Key = {fds225134}
}


%% Gratton, Michael B.   
@article{coarse-grav,
   Author = {M.B. Gratton and T.P. Witelski},
   Title = {Coarsening of dewetting thin films subject to
             gravity},
   Journal = {Phys. Rev. E.},
   Volume = {77},
   Pages = {016301},
   Year = {2008},
   Month = {January},
   Key = {coarse-grav}
}

@article{fds70307,
   Author = {M.B. Gratton et. al.},
   Title = {Backward Diffusion methods for digital halftoning},
   Pages = {1 -- 15},
   Booktitle = {Proceedings of the Twenty-Second Annual Workshop on
             Mathematical Problems in Industry},
   Year = {2006},
   Month = {June},
   Key = {fds70307}
}


%% Greer, John B.   
@article{fds13521,
   Author = {Andrea L. Bertozzi and John B. Greer},
   Title = {Low curvature image simplifiers: global regularity of smooth
             solutions and Laplacian limiting schemes},
   Journal = {Comm. Pure Appl. Math., submitted 2003},
   url = {http://www.math.duke.edu/~jbg33/lcis.ps},
   Key = {fds13521}
}

@article{fds10475,
   Author = {J. B. Greer and A. L. Bertozzi},
   Title = {Traveling Wave Solutions of Fourth Order PDES for Image
             Processing},
   url = {http://www.math.duke.edu/~jbg33/paper/tw.ps},
   Key = {fds10475}
}

@article{fds10219,
   Author = {John B. Greer and Andrea L. Bertozzi},
   Title = {H^1 Solutions of a Class of Fourth Order Nonlinear Equations
             for Image Processing},
   Journal = {Journal of Discrete and Continuous Dynamical
             Systems},
   url = {http://www.math.duke.edu/~jbg33/fourthorder.ps},
   Abstract = {Recently fourth order equations of the form u_t =
             -\nabla\cdot(({\mathcal G}(J_\sigma u)) \nabla \Delta u)
             have been proposed for noise reduction and simplification of
             two dimensional images. The operator \mathcal G is a
             nonlinear functional involving the gradient or Hessian of
             its argument, with decay in the far field. The operator
             J_\sigma is a standard mollifier. Using ODE methods on
             Sobolev spaces, we prove existence and uniqueness of
             solutions of this problem for H^1 initial
             data.},
   Key = {fds10219}
}


%% Gu, Miao   
@article{fds341820,
   Author = {Gu, M and Martin, GG},
   Title = {Factorization tests and algorithms arising from counting
             modular forms and automorphic representations},
   Journal = {Canadian Mathematical Bulletin},
   Volume = {62},
   Number = {1},
   Pages = {81-97},
   Publisher = {Canadian Mathematical Society},
   Year = {2019},
   Month = {March},
   url = {http://dx.doi.org/10.4153/CMB-2018-035-0},
   Abstract = {A theorem of Gekeler compares the number of non-isomorphic
             automorphic representations associated with the space of
             cusp forms of weight k on Γ 0 (N) to a simpler function of
             k and N, showing that the two are equal whenever N is
             squarefree. We prove the converse of this theorem (with one
             small exception), thus providing a characterization of
             squarefree integers. We also establish a similar
             characterization of prime numbers in terms of the number of
             Hecke newforms of weight k on Γ 0 (N). It follows that a
             hypothetical fast algorithm for computing the number of such
             automorphic representations for even a single weight k would
             yield a fast test for whether N is squarefree. We also show
             how to obtain bounds on the possible square divisors of a
             number N that has been found not to be squarefree via this
             test, and we show how to probabilistically obtain the
             complete factorization of the squarefull part of N from the
             number of such automorphic representations for two different
             weights. If in addition we have the number of such Hecke
             newforms for even a single weight k, then we show how to
             probabilistically factor N entirely. All of these
             computations could be performed quickly in practice, given
             the number(s) of automorphic representations and modular
             forms as input.},
   Doi = {10.4153/CMB-2018-035-0},
   Key = {fds341820}
}


%% Gunderson, Ryan   
@article{fds225241,
   Author = {D. Campos and R. Gunderson and S. Morey and C. Paulsen and T.
             Polstra},
   Title = {Depths and Cohen-Macaulay properties of path
             ideals},
   Journal = {Journal of Pure and Applied Algebra},
   Volume = {218},
   Number = {8},
   Pages = {1537–1543},
   Year = {2014},
   Month = {August},
   Key = {fds225241}
}


%% Haskett, Ryan P.   
@article{fds26926,
   Author = {Ryan P. Haskett and Thomas P. Witelski and Jeanman
             Sur},
   Title = {Localized Marangoni Forcing in Driven Thin
             Films},
   Journal = {Physica D},
   Year = {2004},
   Keywords = {thin films fluid dynamics thermocapillary valve Marangoni
             forcing lubrication theory},
   Abstract = {We consider the use of localized Marangoni forcing to
             produce a thermocapillary ``microfluidic valve'' that allows
             us to control the downstream flow of a thin film of viscous
             fluid. To this end, we analyze the influence of this
             localized forcing on a flow driven by a combination of
             uniform Marangoni stresses and gravity in a one-dimensional
             model. Long-time solutions approach states that can be
             categorized in two classes, where the film thickness
             downstream of the forcing is: (I) determined by the upstream
             thickness, or (II) controlled by the forcing amplitude. The
             type~II solutions are stable stationary hydraulic jumps for
             thin films. We give careful attention to the relation
             between the forcing and the downstream film flow for the
             resulting bi-stable solutions. Comparison of the
             one-dimensional theory with two-dimensional computations and
             experimental results is given.},
   Key = {fds26926}
}


%% Hsu, Chun-Hsien   
@article{fds373473,
   Author = {Getz, J and Hsu, C-H and Leslie, S},
   Title = {Harmonic analysis on certain spherical varieties},
   Journal = {Journal of the European Mathematical Society},
   Publisher = {EMS Press},
   Year = {2023},
   Month = {October},
   url = {http://dx.doi.org/10.4171/JEMS/1381},
   Doi = {10.4171/JEMS/1381},
   Key = {fds373473}
}


%% Huo, Ran   
@article{fds338635,
   Author = {Huo, R and Durrett, R},
   Title = {Latent voter model on locally tree-like random
             graphs},
   Journal = {Stochastic Processes and Their Applications},
   Volume = {128},
   Number = {5},
   Pages = {1590-1614},
   Publisher = {Elsevier BV},
   Year = {2018},
   Month = {May},
   url = {http://dx.doi.org/10.1016/j.spa.2017.08.004},
   Abstract = {© 2017 Elsevier B.V. In the latent voter model, individuals
             who have just changed their choice have a latent period,
             which is exponential with rate λ, during which they will
             not change their opinion. We study this model on random
             graphs generated by a configuration model with degrees
             3≤d(x)≤M. We show that if the number of vertices n→∞
             and logn≪λn≪n then there is a quasi-stationary state in
             which each opinion has probability ≈1∕2 and persists in
             this state for a time that is ≥nm for any
             m<∞.},
   Doi = {10.1016/j.spa.2017.08.004},
   Key = {fds338635}
}

@article{fds339579,
   Author = {Beckman, E and Dinan, E and Durrett, R and Huo, R and Junge,
             M},
   Title = {Asymptotic behavior of the brownian frog
             model},
   Journal = {Electronic Journal of Probability},
   Volume = {23},
   Publisher = {Institute of Mathematical Statistics},
   Year = {2018},
   Month = {January},
   url = {http://dx.doi.org/10.1214/18-EJP215},
   Abstract = {© 2018, University of Washington. All rights reserved. We
             introduce an extension of the frog model to Euclidean space
             and prove properties for the spread of active particles. Fix
             r>0 and place a particle at each point x of a unit intensity
             Poisson point process P⊆ℝd−B(0,r). Around each point
             in P, put a ball of radius r. A particle at the origin
             performs Brownian motion. When it hits the ball around x for
             some x ∈ P, new particles begin independent Brownian
             motions from the centers of the balls in the cluster
             containing x. Subsequent visits to the cluster do nothing.
             This waking process continues indefinitely. For r smaller
             than the critical threshold of continuum percolation, we
             show that the set of activated points in P approximates a
             linearly expanding ball. Moreover, in any fixed ball the set
             of active particles converges to a unit intensity Poisson
             point process.},
   Doi = {10.1214/18-EJP215},
   Key = {fds339579}
}


%% Jauregui, Jeff   
@article{fds163797,
   Author = {Hubert L. Bray and Jeffrey L. Jauregui},
   Title = {A geometric theory of zero area singularities in general
             relativity},
   Year = {2009},
   Month = {September},
   url = {http://arxiv.org/abs/0909.0522},
   Key = {fds163797}
}


%% Ji, Hangjie   
@article{fds322248,
   Author = {Y. Gao and H. Ji and J. Liu and T. P. Witelski},
   Title = {Global existence of solutions to a tear film model with
             locally elevated evaporation rates},
   Year = {2017},
   url = {http://arxiv.org/abs/1701.00853},
   Key = {fds322248}
}

@article{fds322247,
   Author = {H. Ji and T. P. Witelski},
   Title = {Finite-time thin film rupture driven by generalized
             evaporative loss},
   Journal = {Physica D: Nonlinear Phenomena},
   Year = {2016},
   url = {http://arxiv.org/abs/1601.03625},
   Key = {fds322247}
}


%% Laurent, Thomas   
@article{fds46038,
   Author = {T. Laurent and B. Rider and M.C. Reed},
   Title = {Parabolic Behavior of a Hyperbolic Delay
             Equation},
   Journal = {SIAM J. Mathematical Analysis},
   Year = {2006},
   Key = {fds46038}
}


%% Lawley, Sean D.   
@article{fds223274,
   Author = {SD Lawley and JC Mattingly and MC Reed},
   Title = {Sensitivity to switching rates in stochastically switched
             ODEs},
   Journal = {Commun. Math. Sci.},
   Year = {2014},
   url = {http://arxiv.org/abs/1310.2525},
   Key = {fds223274}
}

@article{fds223275,
   Author = {SD Lawley and J Yun and M Gamble and M Hall and MC Reed and HF
             Nijhout},
   Title = {Mathematical modeling of the effects of glutathione on
             arsenic methylation},
   Year = {2014},
   Key = {fds223275}
}

@article{fds194478,
   Author = {SD Lawley and M Cinderella and M Hall and M Gamble and HF Nijhout and MC
             Reed},
   Title = {Mathematical model insights into arsenic
             methylation},
   Journal = {Theoretical Biology and Medical Modelling},
   Year = {2011},
   Key = {fds194478}
}


%% Leete, Jessica   
@article{fds346829,
   Author = {Ahmed, S and Hu, R and Leete, J and Layton, AT},
   Title = {Understanding sex differences in long-term blood pressure
             regulation: insights from experimental studies and
             computational modeling.},
   Journal = {American Journal of Physiology Heart and Circulatory
             Physiology},
   Volume = {316},
   Number = {5},
   Pages = {H1113-H1123},
   Year = {2019},
   Month = {May},
   url = {http://dx.doi.org/10.1152/ajpheart.00035.2019},
   Abstract = {Sex differences in blood pressure and the prevalence of
             hypertension are found in humans and animal models.
             Moreover, there has been a recent explosion of data
             concerning sex differences in nitric oxide, the
             renin-angiotensin-aldosterone system, inflammation, and
             kidney function. These data have the potential to reveal the
             mechanisms underlying male-female differences in blood
             pressure control. To elucidate the interactions among the
             multitude of physiological processes involved, one may apply
             computational models. In this review, we describe published
             computational models that represent key players in blood
             pressure regulation, and highlight sex-specific models and
             their findings.},
   Doi = {10.1152/ajpheart.00035.2019},
   Key = {fds346829}
}

@article{fds339743,
   Author = {Leete, J and Layton, AT},
   Title = {Sex-specific long-term blood pressure regulation: Modeling
             and analysis.},
   Journal = {Computers in Biology and Medicine},
   Volume = {104},
   Pages = {139-148},
   Year = {2019},
   Month = {January},
   url = {http://dx.doi.org/10.1016/j.compbiomed.2018.11.002},
   Abstract = {Hypertension is a global health challenge: it affects one
             billion people worldwide and is estimated to account for
             >60% of all cases or types of cardiovascular disease. In
             part because sex differences in blood pressure regulation
             mechanisms are not sufficiently well understood, fewer
             hypertensive women achieve blood pressure control compared
             to men, even though compliance and treatment rates are
             generally higher in women. Thus, the objective of this study
             is to identify which factors contribute to the sexual
             dimorphism in response to anti-hypertensive therapies
             targeting the renin angiotensin system (RAS). To accomplish
             that goal, we develop sex-specific blood pressure regulation
             models. Sex differences in the RAS, baseline adosterone
             level, and the reactivity of renal sympathetic nervous
             activity (RSNA) are represented. A novel aspect of the model
             is the representation of sex-specific vasodilatory effect of
             the bound angiotensin II type two receptor (AT2R-bound Ang
             II) on renal vascular resistance. Model simulations suggest
             that sex differences in RSNA are the largest cause of female
             resistance to developing hypertension due to the direct
             influence of RSNA on afferent arteriole resistance.
             Furthermore, the model predicts that the sex-specific
             vasodilatory effects of AT2R-bound Ang II on renal vascular
             resistance may explain the higher effectiveness of
             angiotensin receptor blockers in treating hypertensive women
             (but not men), compared to angiotensin converting enzyme
             inhibitors.},
   Doi = {10.1016/j.compbiomed.2018.11.002},
   Key = {fds339743}
}

@article{fds346830,
   Author = {Leete, J and Gurley, S and Layton, A},
   Title = {Modeling Sex Differences in the Renin Angiotensin System and
             the Efficacy of Antihypertensive Therapies.},
   Journal = {Computers & Chemical Engineering},
   Volume = {112},
   Pages = {253-264},
   Year = {2018},
   Month = {April},
   url = {http://dx.doi.org/10.1016/j.compchemeng.2018.02.009},
   Abstract = {The renin angiotensin system is a major regulator of blood
             pressure and a target for many anti-hypertensive therapies;
             yet the efficacy of these treatments varies between the
             sexes. We use published data for systemic RAS hormones to
             build separate models for four groups of rats: male
             normotensive, male hypertensive, female normotensive, and
             female hypertensive rats. We found that plasma renin
             activity, angiotensinogen production rate, angiotensin
             converting enzyme activity, and neutral endopeptidase
             activity differ significantly among the four groups of rats.
             Model results indicate that angiotensin converting enzyme
             inhibitors and angiotensin receptor blockers induce similar
             percentage decreases in angiotensin I and II between groups,
             but substantially different absolute decreases. We further
             propose that a major difference between the male and female
             RAS may be the strength of the feedback mechanism, by which
             receptor bound angiotensin II impacts the production of
             renin.},
   Doi = {10.1016/j.compchemeng.2018.02.009},
   Key = {fds346830}
}


%% Leverson, Caitlin   
@article{fds311182,
   Author = {C. Leverson},
   Title = {Augmentations and Rulings of Legendrian Links in
             $\#^k(S^1\times S^2)$},
   Year = {2015},
   url = {http://arxiv.org/abs/1510.06071},
   Key = {fds311182}
}

@article{fds311183,
   Author = {C. Leverson},
   Title = {Augmentations and Rulings of Legendrian Knots},
   Journal = {Journal of Symplectic Geometry},
   Year = {2014},
   url = {http://arxiv.org/abs/1403.4982},
   Key = {fds311183}
}


%% Li, Didong   
@article{fds341808,
   Author = {Didong Li and David B Dunson},
   Title = {Classification via local manifold approximation},
   Year = {2019},
   url = {http://arxiv.org/abs/1903.00985},
   Key = {fds341808}
}

@article{fds341807,
   Author = {D. Li and Minerva Mukhopadhyay and David Dunson},
   Title = {Efficient Manifold and Subspace Approximations with
             Spherelets},
   Year = {2018},
   url = {http://arxiv.org/abs/1706.08263},
   Key = {fds341807}
}

@article{fds337143,
   Author = {Wang, J and Sun, H and Li, D},
   Title = {A Geodesic-Based Riemannian Gradient Approach to Averaging
             on the Lorentz Group},
   Journal = {Entropy},
   Volume = {19},
   Number = {12},
   Pages = {698-698},
   Publisher = {MDPI AG},
   Year = {2017},
   Month = {December},
   url = {https://www.mdpi.com/1099-4300/19/12/698/},
   Doi = {10.3390/e19120698},
   Key = {fds337143}
}

@article{fds346337,
   Author = {Cao, L and Li, D and Zhang, E and Zhang, Z and Sun, H},
   Title = {A Statistical Cohomogeneity One Metric on the Upper Plane
             with Constant Negative Curvature},
   Journal = {Advances in Mathematical Physics},
   Volume = {2014},
   Pages = {1-6},
   Publisher = {Hindawi Limited},
   Year = {2014},
   url = {https://www.hindawi.com/journals/amp/2014/832683/abs/},
   Abstract = {<jats:p>we analyze the geometrical structures of statistical
             manifold<jats:italic>S</jats:italic>consisting of all the
             wrapped Cauchy distributions. We prove that<jats:italic>S</jats:italic>is
             a simply connected manifold with constant negative
             curvature??<mml:mi>K</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn>2</mml:mn></mml:math>.
             However, it is not isometric to the hyperbolic space
             because<jats:italic>S</jats:italic>is noncomplete. In
             fact,<jats:italic>S</jats:italic>is approved to be a
             cohomogeneity one manifold. Finally, we use several tricks
             to get the geodesics and explore the divergence performance
             of them by investigating the Jacobi vector
             field.</jats:p>},
   Doi = {10.1155/2014/832683},
   Key = {fds346337}
}

@article{fds341320,
   Author = {Dongxiao Yang and Didong Li and Huafei Sun},
   Title = {2D Dubins Path in Environments with Obstacle},
   Journal = {Mathematical Problems in Engineering},
   Volume = {2013},
   Year = {2013},
   url = {https://www.hindawi.com/journals/mpe/2013/291372/},
   Doi = {10.1155/2013/291372},
   Key = {fds341320}
}


%% Li, Yi   
@article{fds217611,
   Author = {Y. Li and Anita T. Layton},
   Title = {Accurate computation of Stokes flow driven by an open
             immersed interface},
   Journal = {J. Compute. Phys.},
   Volume = {231},
   Number = {15},
   Pages = {5195-5215},
   Year = {2012},
   Key = {fds217611}
}

@article{fds217612,
   Author = {Y. Li and Sarah A. Williams and Anita T. Layton},
   Title = {A hybrid immersed interface method for driven stokes flow in
             an elastic tube},
   Journal = {Numerical Mathematics: Theory, Methods and
             Applications},
   Year = {2012},
   Key = {fds217612}
}

@article{fds217613,
   Author = {Y. Li and Ioannis Sgouralis and Anita T. Layton},
   Title = {Computing viscous flow in an elastic tube},
   Journal = {SIAM Journal on Scientific Computing},
   Year = {2012},
   Key = {fds217613}
}


%% Little, Anna V.   
@article{fds141693,
   Author = {Tammy Ladner and Anna Little and Ken Marks and Amber
             Russell},
   Title = {Positive Solutions to a Diffusive Logistic Equation with
             Constant Yield Harvesting},
   Journal = {Rose-Hulman Undergraduate Math Journal},
   Year = {2005},
   ISSN = {Vol. 6, Issue 1, 2005},
   url = {http://www.rose-hulman.edu/mathjournal/v6n1.php},
   Abstract = {We consider a reaction diffusion equation which models the
             constant yield harvesting of a spatially heterogeneous
             population which satisfies a logistic growth. In particular,
             we study the existence of positive solutions subject to a
             class of nonlinear boundary conditions. We also provide
             results for the case of Neumann and Robin boundary
             conditions. We obtain our results via a quadrature method
             and Mathematica computations.},
   Key = {fds141693}
}


%% Liu, Zibu   
@article{fds349537,
   Author = {Li, L and Li, Y and Liu, JG and Liu, Z and Lu, J},
   Title = {A stochastic version of stein variational gradient descent
             for efficient sampling},
   Journal = {Communications in Applied Mathematics and Computational
             Science},
   Volume = {15},
   Number = {1},
   Pages = {37-63},
   Publisher = {Mathematical Sciences Publishers},
   Year = {2020},
   Month = {January},
   url = {http://dx.doi.org/10.2140/camcos.2020.15.37},
   Abstract = {We propose in this work RBM-SVGD, a stochastic version of
             the Stein variational gradient descent (SVGD) method for
             efficiently sampling from a given probability measure, which
             is thus useful for Bayesian inference. The method is to
             apply the random batch method (RBM) for interacting particle
             systems proposed by Jin et al. to the interacting particle
             systems in SVGD. While keeping the behaviors of SVGD, it
             reduces the computational cost, especially when the
             interacting kernel has long range. We prove that the one
             marginal distribution of the particles generated by this
             method converges to the one marginal of the interacting
             particle systems under Wasserstein-2 distance on fixed time
             interval T0; T U. Numerical examples verify the efficiency
             of this new version of SVGD.},
   Doi = {10.2140/camcos.2020.15.37},
   Key = {fds349537}
}


%% Melikechi, Omar   
@article{fds367257,
   Author = {Melikechi, O and Young, AL and Tang, T and Bowman, T and Dunson, D and Johndrow, J},
   Title = {Limits of epidemic prediction using SIR models.},
   Journal = {Journal of Mathematical Biology},
   Volume = {85},
   Number = {4},
   Pages = {36},
   Year = {2022},
   Month = {September},
   url = {http://dx.doi.org/10.1007/s00285-022-01804-5},
   Abstract = {The Susceptible-Infectious-Recovered (SIR) equations and
             their extensions comprise a commonly utilized set of models
             for understanding and predicting the course of an epidemic.
             In practice, it is of substantial interest to estimate the
             model parameters based on noisy observations early in the
             outbreak, well before the epidemic reaches its peak. This
             allows prediction of the subsequent course of the epidemic
             and design of appropriate interventions. However, accurately
             inferring SIR model parameters in such scenarios is
             problematic. This article provides novel, theoretical
             insight on this issue of practical identifiability of the
             SIR model. Our theory provides new understanding of the
             inferential limits of routinely used epidemic models and
             provides a valuable addition to current simulate-and-check
             methods. We illustrate some practical implications through
             application to a real-world epidemic data
             set.},
   Doi = {10.1007/s00285-022-01804-5},
   Key = {fds367257}
}


%% Narkawicz, Anthony J.   
@article{fds142516,
   Author = {A.J. Narkawicz},
   Title = {Cohomology jumping loci and relative malcev
             completion},
   Year = {2008},
   Key = {fds142516}
}


%% O'Neill, Christopher   
@article{fds221103,
   Author = {C. O'Neill and R. Pelayo},
   Title = {On the Linearity of Omega-Primality in Numerical
             Monoids},
   Journal = {Journal of Pure and Applied Algebra},
   Year = {2013},
   url = {http://arxiv.org/abs/1309.7476},
   Abstract = {In an atomic, cancellative, commutative monoid, the
             omega-value measures how far an element is from being prime.
             In numerical monoids, we show that this invariant exhibits
             eventual quasilinearity (i.e., periodic linearity). We apply
             this result to describe the asymptotic behavior of the
             omega-function for a general numerical monoid and give an
             explicit formula when the monoid has embedding dimension
             2.},
   Key = {fds221103}
}

@article{fds219347,
   Author = {J. Haarmann and A. Kalauli and A. Moran and C. O'Neill and R.
             Pelayo},
   Title = {Factorization Properties of Leamer Monoids},
   Journal = {Semigroup Forum},
   Year = {2013},
   url = {http://arxiv.org/abs/1309.7477},
   Abstract = {The Huneke-Wiegand conjecture has prompted much recent
             research in Commutative Algebra. In studying this conjecture
             for certain classes of rings, Garcia-Sanchez and Leamer
             construct a monoid S_Gamma^s whose elements correspond to
             arithmetic sequences in a numerical monoid Gamma of step
             size s. These monoids, which we call Leamer monoids, possess
             a very interesting factorization theory that is
             significantly different from the numerical monoids from
             which they are derived. In this paper, we offer much of the
             foundational theory of Leamer monoids, including an analysis
             of their atomic structure, and investigate certain
             factorization invariants. Furthermore, when S_Gamma^s is an
             arithmetical Leamer monoid, we give an exact description of
             its atoms and use this to provide explicit formulae for its
             Delta set and catenary degree.},
   Key = {fds219347}
}


%% Pan, Yu   
@article{fds317667,
   Author = {Y. Pan},
   Title = {Exact Lagrangian fillings of Legendrian (2,n) torus
             links},
   Year = {2016},
   Month = {July},
   url = {http://arxiv.org/abs/ 1607.03167},
   Key = {fds317667}
}

@article{fds317666,
   Author = {Y. Pan},
   Title = {The augmentation category map induced by exact Lagrangian
             cobordisms.},
   Year = {2016},
   Month = {June},
   url = {http://arxiv.org/abs/ArXiv 1606.05884},
   Key = {fds317666}
}

@article{fds222948,
   Author = {Y. Pan and Q. Liu and C.M. Bai and L. Guo},
   Title = {PostLie algebra structures on the Lie algebra
             sl(2,C)},
   Journal = {Electron. J. Linear Algebra},
   Volume = {23 (2012)},
   Pages = {180-197},
   url = {http://arxiv.org/abs/1111.6128},
   Key = {fds222948}
}


%% Parry, Alan R.   
@phdthesis{fds215989,
   Author = {Alan R. Parry},
   Title = {Wave Dark Matter and Dwarf Spheroidal Galaxies},
   Publisher = {Duke University},
   Address = {Durham, NC},
   Year = {2013},
   Month = {March},
   Key = {fds215989}
}

@article{fds214514,
   Author = {Hubert L. Bray and Alan R. Parry},
   Title = {Modeling Wave Dark Matter in Dwarf Spheroidal
             Galaxies},
   Year = {2013},
   Month = {January},
   url = {http://arxiv.org/abs/1301.0255},
   Key = {fds214514}
}

@article{fds214513,
   Author = {Alan R. Parry},
   Title = {Spherically Symmetric Static States of Wave Dark
             Matter},
   Year = {2012},
   Month = {December},
   url = {http://arxiv.org/abs/1212.6426},
   Key = {fds214513}
}

@article{fds214515,
   Author = {Alan R. Parry},
   Title = {A Survey of Spherically Symmetric Spacetimes},
   Year = {2012},
   Month = {October},
   url = {http://arxiv.org/abs/1210.5269},
   Keywords = {General Relativity Spherical Symmetry Einstein-Klein-Gordon
             Equations},
   Abstract = {We present several different ways of describing a
             spherically symmetric spacetime and the resulting metrics.
             We then focus our discussion on an especially useful form of
             the metric of a spherically symmetric spacetime in
             polar-areal coordinates and its properties. In particular,
             we show how the metric component functions chosen are
             extremely compatible with notions in Newtonian mechanics. We
             also show the monotonicity of the Hawking mass in these
             coordinates. Finally, we discuss how these coordinates and
             the metric can be used to solve the spherically symmetric
             Einstein-Klein-Gordon equations and how this will be useful
             in our future work.},
   Key = {fds214515}
}

@mastersthesis{fds159065,
   Author = {Alan R. Parry},
   Title = {A Classification of Real Indecomposable Solvable Lie
             Algebras of Small Dimension with Codimension One
             Nilradicals},
   Publisher = {Utah State University},
   Address = {Logan, UT},
   Year = {2007},
   Month = {August},
   url = {http://gradworks.umi.com/14/48/1448067.html},
   Keywords = {Lie Algebras},
   Key = {fds159065}
}


%% Player, Kevin J.   
@article{fds9853,
   Author = {K.T. Arasu and Kevin J. Player},
   Title = {A New Family of Cyclic Difference Sets with Singer
             Parameters in Characteristic Three},
   Journal = {Designs Codes and Cryptography},
   Key = {fds9853}
}

@article{fds9854,
   Author = {K.T Arasu and Henk D. L. Hollmann and Kevin J. Player and Qing
             Xiang},
   Title = {On the p-Ranks of GWM Difference Sets},
   Journal = {"Special issue in honor of Prof. Ray-Chaudhuri's 65th
             birthday" of OSU math research monograph
             series},
   Key = {fds9854}
}


%% Potter, Harrison   
@article{fds296271,
   Author = { Harrison Potter},
   Title = {On Conformal Mappings and Vector Fields},
   Journal = {OhioLINK Electronic Theses and Dissertations
             Center},
   Year = {2008},
   Month = {May},
   url = {http://etd.ohiolink.edu/view.cgi?acc_num=marhonors1210888378},
   Abstract = {We seek to extend the applicability of the tools of complex
             analysis that have been developed to deal with problems in
             two-dimensional harmonic field theory. In order to ease the
             reader who has only a basic understanding of complex
             analysis into a working knowledge of its relevant
             applications to field theory, this material is introduced
             through the use of vector fields as common ground.
             Opportunities for using the mathematical tools being
             developed to solve physical problems are also highlighted by
             examples in order to aid comprehension and foster intuition.
             Established techniques used in solving problems involving
             point sources are then generalized to handle those involving
             interval sources.},
   Key = {fds296271}
}

@article{fds296272,
   Author = {VX Dang and H Potter and S Glasgow and S Taylor},
   Title = {Pricing the Asian Call Option},
   Journal = {Electronic Proceedings of Undergraduate Mathematics
             Day},
   Volume = {3},
   Number = {3},
   Pages = {26},
   Year = {2008},
   Month = {February},
   url = {http://academic.udayton.edu/EPUMD/},
   Abstract = {Background material on measure-theoretic probability theory
             and stochastic calculus is provided in order to clarify
             notation and inform the reader unfamiliar with these
             concepts. These fields are then employed in exploring two
             distinct but related approaches to fair option pricing:
             developing a partial differential equation whose solution,
             given specified boundary conditions, is the desired fair
             option price and evaluating a riskneutral conditional
             expectation whose value is the fair option price. Both
             approaches are illustrated by example before being applied
             to the Asian call option. Two results are obtained by
             applying the latter option pricing approach to the Asian
             call option. The price of an Asian call option is shown to
             be equal to an integral of an unknown joint distribution
             function. This exact formula is then made approximate by
             allowing one of the random variables to become a parameter
             of the system. This modified Asian call option is then
             priced explicitly, leading to a formula that is strikingly
             similar to the Black- Scholes-Merton formula, which prices
             the European call option. Finally, possible methods of
             generalizing the procedure to price the Asian call option
             both exactly and explicitly are speculated.},
   Key = {fds296272}
}


%% Rose, David E.   
@misc{fds194842,
   Author = {David E. V. Rose},
   Title = {A categorification of quantum $\mathfrak{sl}_3$ projectors
             and the $\mathfrak{sl}_3$ Reshetikhin-Turaev invariant of
             tangles},
   Journal = {arXiv:1109.1745v1 [math.GT]},
   Year = {2011},
   Key = {fds194842}
}

@misc{fds194843,
   Author = {David E. V. Rose},
   Title = {A note on the Grothendieck group of an additive
             category},
   Journal = {arXiv:1109.2040v1 [math.CT]},
   Year = {2011},
   Key = {fds194843}
}

@article{fds142083,
   Author = {David E. V. Rose and Ilya M. Spitkovsky},
   Title = {On the stabilization of the Aluthge sequence},
   Journal = {International Journal of Information and Systems
             Sciences},
   Volume = {4},
   Number = {1},
   Pages = {178-189},
   Year = {2008},
   Month = {Spring},
   ISSN = {1708-296X},
   Key = {fds142083}
}

@article{fds139616,
   Author = {David E. V. Rose and Ilya M. Spitkovsky},
   Title = {On the numerical range behavior under the generalized
             Aluthge transform},
   Journal = {Linear and Multilinear Algebra},
   Volume = {56},
   Number = {1&2},
   Pages = {163-177},
   Publisher = {Taylor and Francis},
   Year = {2008},
   Month = {January},
   Keywords = {Aluthge transform Numerical range},
   Key = {fds139616}
}


%% Ryu, Hwayeon   
@article{fds218275,
   Author = {Hwayeon Ryu and Anita T. Layton},
   Title = {Feedback-mediated dynamics in a model of coupled nephrons
             with compliant short loop of Henle},
   Journal = {AMS Contemporary Mathematics, Biological Fluid Dynamics:
             Modeling, Computations, and Applications},
   Year = {2013},
   Month = {March},
   Key = {fds218275}
}

@article{fds215979,
   Author = {Hwayeon Ryu and Anita T. Layton},
   Title = {Tubular fluid flow and distal NaCl delivery mediated by
             tubuloglomerular feedback in the rat kidney},
   Journal = {J Math Biol},
   Year = {2013},
   Month = {March},
   Key = {fds215979}
}

@article{fds218850,
   Author = {Hwayeon Ryu and Anita T. Layton},
   Title = {Effect of Tubular Inhomogeneities on Feedback-Mediated
             Dynamics of a Model of a Thick Ascending
             Limb},
   Journal = {Math Med Biol},
   Volume = {30},
   Number = {3},
   Pages = {191-212},
   Year = {2013},
   Key = {fds218850}
}

@article{fds204653,
   Author = {Anita T. Layton and Philip Pham and Hwayeon
             Ryu},
   Title = {Signal transduction in a compliant short loop of
             Henle},
   Journal = {Int J Numer Methods Biomed Eng, vol. 28 no. 3 (2012), pp.
             369-380},
   Key = {fds204653}
}


%% Sgouralis, Ioannis   
@article{fds223258,
   Author = {Ioannis Sgouralis, and Anita T. Layton},
   Title = {Theoretical Assessment of Renal Autoregulatory
             Mechanisms},
   Journal = {Am J Physiol Renal Physiol},
   Year = {2014},
   Month = {March},
   Key = {fds223258}
}

@article{fds222884,
   Author = {Yi Li and Ioannis Sgouralis and Anita T. Layton},
   Title = {Computing viscous flow in an elastic tube},
   Journal = {Numer Math Theor Meth Appl},
   Year = {2014},
   Key = {fds222884}
}

@article{fds223280,
   Author = {Brendan C. Fry and Aurelie Edward and Ioannis Sgouralis and Anita
             T. Layton},
   Title = {Impact of renal medullary three-dimensional architecture on
             oxygen transport},
   Journal = {Am J Physiol Renal Physiol},
   Year = {2014},
   Key = {fds223280}
}

@article{fds219527,
   Author = {Ioannis Sgouralis, and Anita T. Layton},
   Title = {Control and modulation of fluid flow in the rat
             kidney},
   Journal = {Bull Math Biol (2013) 75:2551-2574 F1000Prime Recommended},
   Year = {2013},
   Month = {December},
   url = {http://dx.doi.org/10.1007/s11538-013-9907-5},
   Doi = {10.1007/s11538-013-9907-5},
   Key = {fds219527}
}

@article{fds208425,
   Author = {Ioannis Sgouralis, and Anita T. Layton},
   Title = {Autoregulation and conduction of vasomotor responses in a
             mathematical model of the rat afferent arteriole},
   Journal = {Am J Physiol Renal Physiol},
   Volume = {303},
   Pages = {F229-F239},
   Year = {2012},
   Month = {July},
   url = {http://dx.doi.org/10.1152/ajprenal.00589.2011},
   Doi = {10.1152/ajprenal.00589.2011},
   Key = {fds208425}
}

@article{fds196319,
   Author = {Jing Chen and Ioannis Sgouralis and Leon C. Moore and Harold E.
             Layton and Anita T. Layton},
   Title = {A Mathematical Model of the Myogenic Response to Systolic
             Pressure in the Afferent Arteriole},
   Journal = {Am J Physiol Renal Physiol},
   Volume = {300},
   Pages = {F669-F681},
   Year = {2011},
   Month = {March},
   url = {http://dx.doi.org/10.1152/ajprenal.00382.2010},
   Doi = {10.1152/ajprenal.00382.2010},
   Key = {fds196319}
}


%% Shan, Shan   
@article{fds346319,
   Author = {Shan, S and Kovalsky, SZ and Winchester, JM and Boyer, DM and Daubechies, I},
   Title = {ariaDNE: A robustly implemented algorithm for Dirichlet
             energy of the normal},
   Journal = {Methods in Ecology and Evolution},
   Volume = {10},
   Number = {4},
   Pages = {541-552},
   Year = {2019},
   Month = {April},
   url = {http://dx.doi.org/10.1111/2041-210X.13148},
   Abstract = {© 2019 The Authors. Methods in Ecology and Evolution ©
             2019 British Ecological Society Shape characterizers are
             metrics that quantify aspects of the overall geometry of a
             three-dimensional (3D) digital surface. When computed for
             biological objects, the values of a shape characterizer are
             largely independent of homology interpretations and often
             contain a strong ecological and functional signal. Thus,
             shape characterizers are useful for understanding
             evolutionary processes. Dirichlet normal energy (DNE) is a
             widely used shape characterizer in morphological studies.
             Recent studies found that DNE is sensitive to various
             procedures for preparing 3D mesh from raw scan data, raising
             concerns regarding comparability and objectivity when
             utilizing DNE in morphological research. We provide a
             robustly implemented algorithm for computing the Dirichlet
             energy of the normal (ariaDNE) on 3D meshes. We show through
             simulation that the effects of preparation-related mesh
             surface attributes, such as triangle count, mesh
             representation, noise, smoothing and boundary triangles, are
             much more limited on ariaDNE than DNE. Furthermore, ariaDNE
             retains the potential of DNE for biological studies,
             illustrated by its effectiveness in differentiating species
             by dietary preferences. Use of ariaDNE can dramatically
             enhance the assessment of the ecological aspects of
             morphological variation by its stability under different 3D
             model acquisition methods and preparation procedure. Towards
             this goal, we provide scripts for computing ariaDNE and
             ariaDNE values for specimens used in previously published
             DNE analyses.},
   Doi = {10.1111/2041-210X.13148},
   Key = {fds346319}
}


%% Smith, Abraham D   
@misc{fds139484,
   Author = {Rann Bar-On and Paul Bendich and Benjamin Cooke and Michael Gratton and Timothy Lucas and Michael Nicholas and Nicholas Robbins and Abraham
             Smith, Joseph Spivey},
   Title = {Graduate Calculus Curriculum Review, Spring
             2007},
   Year = {2007},
   Month = {March},
   url = {http://www.math.duke.edu/~adsmith/proposal.pdf},
   Abstract = {This document is the end result of a several-month-long
             study of the calculus curriculum by a group of experienced
             graduate instructors. Herein, we propose specific changes to
             each course as well as significant changes to the curriculum
             as a whole. We arrived at these proposals after carefully
             considering the mathematical content of each class, its
             intended audience, and the mathematical requirements of the
             various physical, biological, and social sciences. In the
             course of gathering this information, we interviewed
             graduate instructors, teaching faculty, and teachers of
             concurrent courses in many other departments. <p> For each
             of 25L, 26L, 31L, 32L and the multivariable courses, we
             suggest shifting the position or emphasis of various topics,
             and we suggest alterations to specific lab assignments. In
             several cases, we have replacement labs in concept or in
             outline, and expect to write the new labs during Spring and
             Summer. <p> Most significantly, we propose replacing 32 and
             41 with 41L, a course we designed specifically for incoming
             freshmen who have gained AP credit for 31. The course is a
             careful balance of rigorous mathematics, computational
             techniques, and physical applications.},
   Key = {fds139484}
}


%% Spivey, Joseph A.   
@misc{fds139511,
   Author = {J.A. Spivey and J.Bookman},
   Title = {Approximating Definite Integrals},
   Year = {2007},
   Month = {Summer},
   url = {http://www.math.duke.edu/~jaspive/Joseph},
   Key = {fds139511}
}


%% Steenbergen, John J   
@article{fds210553,
   Author = {J.J. Steenbergen and Caroline Klivans and Sayan
             Mukherjee.},
   Title = {“A Cheeger-Type Inequality on Simplicial
             Complexes”},
   Year = {2012},
   Month = {September},
   url = {http://arxiv.org/abs/1209.5091},
   Key = {fds210553}
}


%% Streets, Jeffrey D.   
@article{fds51322,
   Author = {J.D. Streets},
   Title = {The Gradient Flow of $\int_M | \Rm|^2$},
   Journal = {Journal of Geometric Analysis},
   Year = {2006},
   url = {http://math.duke.edu/~streets/L2gradflow.pdf},
   Key = {fds51322}
}

@article{fds53441,
   Author = {J.D. Streets},
   Title = {Quasi-Local Mass Functionals and Generalized Inverse Mean
             Curvature Flow},
   Journal = {Communications in Analysis and Geometry},
   Year = {2006},
   url = {http://math.duke.edu/~streets/gimcf.pdf},
   Key = {fds53441}
}


%% Stubbs, Kevin   
@article{fds355604,
   Author = {Stubbs, KD and Watson, AB and Lu, J},
   Title = {Iterated projected position algorithm for constructing
             exponentially localized generalized Wannier functions for
             periodic and nonperiodic insulators in two dimensions and
             higher},
   Journal = {Physical Review B},
   Volume = {103},
   Number = {7},
   Year = {2021},
   Month = {February},
   url = {http://dx.doi.org/10.1103/PhysRevB.103.075125},
   Abstract = {Localized bases play an important role in understanding
             electronic structure. In periodic insulators, a natural
             choice of localized basis is given by the Wannier functions
             which depend on a choice of unitary transform known as a
             gauge transformation. Over the past few decades, there have
             been many works that have focused on optimizing the choice
             of the gauge so that the corresponding Wannier functions are
             maximally localized or reflect some symmetry of the
             underlying system. In this work, we consider fully
             nonperiodic materials where the usual Wannier functions are
             not well defined and gauge optimization is impractical. To
             tackle the problem of calculating exponentially localized
             generalized Wannier functions in both periodic and
             nonperiodic systems, we discuss the 'iterated projected
             position (IPP)"algorithm. The IPP algorithm is based on
             matrix diagonalization and therefore unlike
             optimization-based approaches, it does not require
             initialization and cannot get stuck at a local minimum.
             Furthermore, the IPP algorithm is guaranteed by a rigorous
             analysis to produce exponentially localized functions under
             certain mild assumptions. We numerically demonstrate that
             the IPP algorithm can be used to calculate exponentially
             localized bases for the Haldane model, the Kane-Mele model
             (in both Z2 invariant even and Z2 invariant odd phases), and
             the px+ipy model on a quasicrystal lattice.},
   Doi = {10.1103/PhysRevB.103.075125},
   Key = {fds355604}
}

@article{fds355364,
   Author = {Brandsen, S and Lian, M and Stubbs, KD and Rengaswamy, N and Pfister,
             HD},
   Title = {Adaptive Procedures for Discriminating Between Arbitrary
             Tensor-Product Quantum States},
   Journal = {Ieee International Symposium on Information Theory
             Proceedings},
   Volume = {2020-June},
   Pages = {1933-1938},
   Year = {2020},
   Month = {June},
   url = {http://dx.doi.org/10.1109/ISIT44484.2020.9174234},
   Abstract = {Discriminating between quantum states is a fundamental task
             in quantum information theory. Given two quantum states, ρ
             and ρ , the Helstrom measurement distinguishes between them
             with minimal probability of error. However, finding and
             experimentally implementing the Helstrom measurement can be
             challenging for quantum states on many qubits. Due to this
             difficulty, there is a great interest in identifying local
             measurement schemes which are close to optimal. In the first
             part of this work, we generalize previous work by Acin et
             al. (Phys. Rev. A 71, 032338) and show that a locally greedy
             (LG) scheme using Bayesian updating can optimally
             distinguish between any two states that can be written as a
             tensor product of arbitrary pure states. We then show that
             the same algorithm cannot distinguish tensor products of
             mixed states with vanishing error probability (even in a
             large subsystem limit), and introduce a modified
             locally-greedy (MLG) scheme with strictly better
             performance. In the second part of this work, we compare
             these simple local schemes with a general dynamic
             programming (DP) approach. The DP approach finds the optimal
             series of local measurements and optimal order of subsystem
             measurement to distinguish between the two tensor-product
             states. + - 1},
   Doi = {10.1109/ISIT44484.2020.9174234},
   Key = {fds355364}
}

@article{fds355365,
   Author = {Brandsen, S and Stubbs, KD and Pfister, HD},
   Title = {Reinforcement Learning with Neural Networks for Quantum
             Multiple Hypothesis Testing},
   Journal = {Ieee International Symposium on Information Theory
             Proceedings},
   Volume = {2020-June},
   Pages = {1897-1902},
   Year = {2020},
   Month = {June},
   ISBN = {9781728164328},
   url = {http://dx.doi.org/10.1109/ISIT44484.2020.9174150},
   Abstract = {Reinforcement learning with neural networks (RLNN) has
             recently demonstrated great promise for many problems,
             including some problems in quantum information theory. In
             this work, we apply reinforcement learning to quantum
             hypothesis testing, where one designs measurements that can
             distinguish between multiple quantum states j = 1 while
             minimizing the error probability. Although the Helstrom
             measurement is known to be optimal when there are m=2
             states, the general problem of finding a minimal-error
             measurement is challenging. Additionally, in the case where
             the candidate states correspond to a quantum system with
             many qubit subsystems, implementing the optimal measurement
             on the entire system may be impractical. In this work, we
             develop locally-adaptive measurement strategies that are
             experimentally feasible in the sense that only one quantum
             subsystem is measured in each round. RLNN is used to find
             the optimal measurement protocol for arbitrary sets of
             tensor product quantum states. Numerical results for the
             network performance are shown. In special cases, the neural
             network testing-policy achieves the same probability of
             success as the optimal collective measurement.},
   Doi = {10.1109/ISIT44484.2020.9174150},
   Key = {fds355365}
}

@article{fds340299,
   Author = {Czaja, W and Manning, B and Murphy, JM and Stubbs,
             K},
   Title = {Discrete directional Gabor frames},
   Journal = {Applied and Computational Harmonic Analysis},
   Volume = {45},
   Number = {1},
   Pages = {1-21},
   Publisher = {Elsevier BV},
   Year = {2018},
   Month = {July},
   url = {http://dx.doi.org/10.1016/j.acha.2016.07.004},
   Doi = {10.1016/j.acha.2016.07.004},
   Key = {fds340299}
}


%% Su, Langxuan   
@article{fds361539,
   Author = {Mattingly, JC and Romito, M and Su, L},
   Title = {The Gaussian structure of the singular stochastic Burgers
             equation},
   Journal = {Forum of Mathematics, Sigma},
   Volume = {10},
   Publisher = {Cambridge University Press (CUP)},
   Year = {2022},
   Month = {September},
   url = {http://dx.doi.org/10.1017/fms.2022.64},
   Abstract = {We consider the stochastically forced Burgers equation with
             an emphasis on spatially rough driving noise. We show that
             the law of the process at a fixed time t, conditioned on no
             explosions, is absolutely continuous with respect to the
             stochastic heat equation obtained by removing the
             nonlinearity from the equation. This establishes a form of
             ellipticity in this infinite-dimensional setting. The
             results follow from a recasting of the Girsanov Theorem to
             handle less spatially regular solutions while only proving
             absolute continuity at a fixed time and not on path-space.
             The results are proven by decomposing the solution into the
             sum of auxiliary processes, which are then shown to be
             absolutely continuous in law to a stochastic heat equation.
             The number of levels in this decomposition diverges to
             infinite as we move to the stochastically forced Burgers
             equation associated to the KPZ equation, which we conjecture
             is just beyond the validity of our results (and certainly
             the current proof). The analysis provides insights into the
             structure of the solution as we approach the regularity of
             KPZ. A number of techniques from singular SPDEs are
             employed, as we are beyond the regime of classical solutions
             for much of the paper.},
   Doi = {10.1017/fms.2022.64},
   Key = {fds361539}
}

@article{fds362666,
   Author = {Su, L and Mukherjee, S},
   Title = {Large Deviation Asymptotics and Bayesian Posterior
             Consistency on Stochastic Processes and Dynamical
             Systems},
   Year = {2021},
   Month = {June},
   Abstract = {We consider generalized Bayesian inference on stochastic
             processes and dynamical systems with potentially long-range
             dependency. Given a sequence of observations, a class of
             parametrized model processes with a prior distribution, and
             a loss function, we specify the generalized posterior
             distribution. The problem of frequentist posterior
             consistency is concerned with whether as more and more
             samples are observed, the posterior distribution on
             parameters will asymptotically concentrate on the "right"
             parameters. We show that posterior consistency can be
             derived using a combination of classical large deviation
             techniques, such as Varadhan's lemma, conditional/quenched
             large deviations, annealed large deviations, and exponential
             approximations. We show that the posterior distribution will
             asymptotically concentrate on parameters that minimize the
             expected loss and a divergence term, and we identify the
             divergence term as the Donsker-Varadhan relative entropy
             rate from process-level large deviations. As an application,
             we prove new quenched and annealed large deviation
             asymptotics and new Bayesian posterior consistency results
             for a class of mixing stochastic processes. In the case of
             Markov processes, one can obtain explicit conditions for
             posterior consistency, whenever estimates for log-Sobolev
             constants are available, which makes our framework
             essentially a black box. We also recover state-of-the-art
             posterior consistency on classical dynamical systems with a
             simple proof. Our approach has the potential of proving
             posterior consistency for a wide range of Bayesian
             procedures in a unified way.},
   Key = {fds362666}
}


%% Teguia, Alberto M   
@article{fds185162,
   Author = {A.M. Teguia and A Petters},
   Title = {A Mathematical Theory of Stochastic Microlensing III.
             Densities for Radial, Spatial Distributions with General
             Random Mass Spectrum},
   Year = {2010},
   Key = {fds185162}
}

@article{fds185163,
   Author = {A. Petters},
   Title = {A Mathematical Theory of Stochastic Microlensing. IV. Global
             Expectations and Shear for Radial Distributions with a
             General Mass Spectrum},
   Year = {2010},
   Key = {fds185163}
}

@article{fds175315,
   Author = {A.M. Teguia and A. Petters and B. Rider},
   Title = {A Mathematical Theory of Stochastic Microlensing II. Random
             Images, Shear, and the Kac-Rice Formula},
   Journal = {Journal of Mathematical Physics},
   Volume = {50},
   Pages = {122501},
   Year = {2009},
   Month = {December},
   Key = {fds175315}
}

@article{fds175316,
   Author = {A.M. Teguia and A. Petters and B. Rider},
   Title = {A Mathematical Theory of Stochastic Microlensing I. Random
             Time-Delay Functions and Lensing Maps},
   Journal = {Journal of Mathematical Physics},
   Volume = {50},
   Pages = {072503},
   Year = {2009},
   Month = {October},
   Key = {fds175316}
}

@article{fds185165,
   Author = {A.M. Teguia and J. Gardner and A. Godbole and A. Vuong and N. Watson and C.
             Yerger},
   Title = {Domination Cover Pebbling: Graph Families},
   Journal = {Journal of Combinatorial Mathematics and Combinatorial
             Computing},
   Year = {2008},
   Month = {November},
   url = {http://arxiv.org/abs/math/0507271v1},
   Key = {fds185165}
}

@article{fds142536,
   Author = {A.M. Teguia and A. Godbole},
   Title = {Sierpinski Gasket Graphs and Some of their
             Properties},
   Journal = {Australasian Journal of Combinatorics},
   Volume = {35},
   Pages = {181-192},
   Year = {2006},
   Month = {June},
   url = {http://arxiv.org/abs/math/0509259v1},
   Key = {fds142536}
}


%% Thomas, Ashleigh   
@article{fds223719,
   Author = {J. Brindza and A. Thomas and S. Lee and W. McDermid and Y. He and D.
             Lee},
   Title = {Active Sound Localization in a Symmetric
             Environment},
   Journal = {Int J Adv Robot Syst},
   Volume = {10},
   Number = {301},
   Year = {2013},
   url = {http://cdn.intechopen.com/pdfs/45523/InTechActive_sound_localization_in_a_symmetric_environment.pdf},
   Keywords = {localization},
   Key = {fds223719}
}


%% Thomas, Rachel L.   
@article{fds147056,
   Author = {Reed M and Thomas R and Pavisic J and James SJ and Ulrich C and Nijhout
             HF},
   Title = {A Mathematical Model of Glutathione Metabolism},
   Journal = {Theoretical Biology & Medical Modelling},
   Year = {2008},
   Month = {April},
   url = {http://www.tbiomed.com/content/5/1/8},
   Key = {fds147056}
}

@article{fds164044,
   Author = {Petronella SA and Thomas RL and Stone JA and Goldblum RM and Brooks
             EG},
   Title = {Clearing the Air: A Model for Investigating Indoor Air
             Quality in Texas Schools},
   Journal = {Journal of Environmental Health},
   Volume = {67},
   Year = {2005},
   Month = {June},
   Key = {fds164044}
}

@article{fds164045,
   Author = {Rhoades RC and Thomas RL},
   Title = {When Abelian Groups Split},
   Journal = {Rose-Hulman Mathematical Sciences Technical Report
             Series},
   Volume = {03-01},
   Year = {2003},
   Key = {fds164045}
}


%% Vagner, Dmitry   
@article{fds317684,
   Author = {Dmitry Vagner and David I. Spivak and Eugene Lerman},
   Title = {Algebras of Open Dynamical Systems on the Operad of Wiring
             Diagrams},
   Journal = {Theory and Application of Categories},
   Volume = {30},
   Number = {51},
   Pages = {1793-1822},
   Year = {2015},
   Month = {December},
   url = {http://www.tac.mta.ca/tac/volumes/30/51/30-51abs.html},
   Key = {fds317684}
}


%% Wang, Lihan   
@article{fds355588,
   Author = {Yu Cao and Jianfeng Lu and Lihan wang},
   Title = {Complexity of randomized algorithms for underdamped Langevin
             dynamics},
   Journal = {Communications in Mathematical Sciences},
   Year = {2021},
   Month = {March},
   url = {http://arxiv.org/abs/2003.09906},
   Key = {fds355588}
}

@article{fds355587,
   Author = {Lei Li and Jianfeng Lu and Jonathan Mattingly and Lihan
             Wang},
   Title = {Numerical methods for stochastic differential equations
             based on Gaussian mixture},
   Journal = {Communications in Mathematical Sciences},
   Year = {2021},
   Month = {February},
   url = {http://arxiv.org/abs/1812.11932},
   Key = {fds355587}
}

@article{fds354148,
   Author = {Jianfeng Lu and Lihan Wang},
   Title = {Complexity of zigzag sampling algorithm for strongly
             log-concave distributions},
   Year = {2020},
   Month = {December},
   url = {http://arxiv.org/abs/ 2012.11094},
   Key = {fds354148}
}

@article{fds350883,
   Author = {Jianfeng Lu and Lihan Wang},
   Title = {On explicit L2-convergence rate estimate for piecewise
             deterministic Markov processes in MCMC algorithms},
   Year = {2020},
   Month = {July},
   url = {http://arxiv.org/abs/ 2007.14927},
   Key = {fds350883}
}

@article{fds345493,
   Author = {Yu Cao and Jianfeng Lu and Lihan Wang},
   Title = {On explicit L2-convergence rate estimate for underdamped
             Langevin dynamics},
   Year = {2019},
   Month = {August},
   url = {http://arxiv.org/abs/1908.04746},
   Key = {fds345493}
}


%% Wang, Zhe   
@article{fds349535,
   Author = {Lu, J and Wang, Z},
   Title = {The full configuration interaction quantum monte carlo
             method through the lens of inexact power
             iteration},
   Journal = {Siam Journal on Scientific Computing},
   Volume = {42},
   Number = {1},
   Pages = {B1-B29},
   Year = {2020},
   Month = {January},
   url = {http://dx.doi.org/10.1137/18M1166626},
   Abstract = {© 2020 Society for Industrial and Applied Mathematics. In
             this paper, we propose a general analysis framework for
             inexact power iteration, which can be used to efficiently
             solve high-dimensional eigenvalue problems arising from
             quantum many-body problems. Under this framework, we
             establish the convergence theorems for several recently
             proposed randomized algorithms, including full configuration
             interaction quantum Monte Carlo and fast randomized
             iteration. The analysis is consistent with numerical
             experiments for physical systems such as the Hubbard model
             and small chemical molecules. We also compare the algorithms
             both in convergence analysis and numerical
             results.},
   Doi = {10.1137/18M1166626},
   Key = {fds349535}
}

@article{fds342764,
   Author = {Wang, Z and Li, Y and Lu, J},
   Title = {Coordinate Descent Full Configuration Interaction.},
   Journal = {Journal of Chemical Theory and Computation},
   Volume = {15},
   Number = {6},
   Pages = {3558-3569},
   Year = {2019},
   Month = {June},
   url = {http://dx.doi.org/10.1021/acs.jctc.9b00138},
   Abstract = {We develop an efficient algorithm, coordinate descent FCI
             (CDFCI), for the electronic structure ground-state
             calculation in the configuration interaction framework.
             CDFCI solves an unconstrained nonconvex optimization
             problem, which is a reformulation of the full configuration
             interaction eigenvalue problem, via an adaptive coordinate
             descent method with a deterministic compression strategy.
             CDFCI captures and updates appreciative determinants with
             different frequencies proportional to their importance. We
             show that CDFCI produces accurate variational energy for
             both static and dynamic correlation by benchmarking the
             binding curve of nitrogen dimer in the cc-pVDZ basis with
             10-3 mHa accuracy. We also demonstrate the efficiency and
             accuracy of CDFCI for strongly correlated chromium dimer in
             the Ahlrichs VDZ basis and produce state-of-the-art
             variational energy.},
   Doi = {10.1021/acs.jctc.9b00138},
   Key = {fds342764}
}

@article{fds345877,
   Author = {Yingzhou, LI and Jianfeng, LU and Wang, AZHE},
   Title = {Coordinatewise descent methods for leading eigenvalue
             problem},
   Journal = {Siam Journal on Scientific Computing},
   Volume = {41},
   Number = {4},
   Pages = {A2681-A2716},
   Publisher = {Society for Industrial & Applied Mathematics
             (SIAM)},
   Year = {2019},
   Month = {January},
   url = {http://dx.doi.org/10.1137/18M1202505},
   Abstract = {© 2019 Society for Industrial and Applied Mathematics
             Leading eigenvalue problems for large scale matrices arise
             in many applications. Coordinatewise descent methods are
             considered in this work for such problems based on a
             reformulation of the leading eigenvalue problem as a
             nonconvex optimization problem. The convergence of several
             coordinatewise methods is analyzed and compared. Numerical
             examples of applications to quantum many-body problems
             demonstrate the efficiency and provide benchmarks of the
             proposed coordinatewise descent methods.},
   Doi = {10.1137/18M1202505},
   Key = {fds345877}
}


%% Watanabe, Tatsunari   
@article{fds226201,
   Author = {T. Watanabe},
   Title = {Rational points of universal curves in positive
             characteristics},
   Year = {2014},
   url = {http://arxiv.org/abs/arxiv/abs/1410.3020},
   Key = {fds226201}
}


%% Williamson, Brendan   
@article{fds218909,
   Author = {B. Williamson},
   Title = {Large deviation theory: estimating the probabilities of rare
             events},
   Journal = {Irish Undergraduate Mathematical Magazine},
   Year = {2013},
   Month = {Summer},
   Key = {fds218909}
}


%% Xu, Feng   
@article{fds142520,
   Author = {F. Xu},
   Title = {SU(3) structures and special Lagrangian geometries},
   Year = {2006},
   Month = {November},
   Key = {fds142520}
}


%% Xu, Hangjun   
@misc{fds223718,
   Author = {H. Xu},
   Title = {Uniformly Area Expanding Flows in Spacetimes (theis, Duke
             University)},
   Year = {2014},
   Month = {April},
   url = {http://dukespace.lib.duke.edu/dspace/bitstream/handle/10161/8732/Xu_duke_0066D_12371.pdf?sequence=1},
   Key = {fds223718}
}


%% Yao, Dong   
@article{fds337128,
   Author = {van der Hoorn, P and Yao, D and Litvak, N},
   Title = {Average nearest neighbor degrees in scale-free
             networks},
   Journal = {Internet Mathematics},
   Publisher = {Internet Mathematics},
   Year = {2018},
   Month = {January},
   url = {http://dx.doi.org/10.24166/im.02.2018},
   Doi = {10.24166/im.02.2018},
   Key = {fds337128}
}


%% Zhang, Yuan   
@article{fds226441,
   Author = {Y. Zhang and J. Liu},
   Title = {Convergence of Diffusion-Drift Many Particle Systems in
             Probability under Sobolev Norm},
   Year = {2015},
   Month = {April},
   Key = {fds226441}
}

@article{fds225992,
   Author = {Y. Zhang and A, Lloyd},
   Title = {Weak Convergence of a Seasonally Forced Stochastic Epidemic
             Model},
   Year = {2015},
   url = {http://arxiv.org/abs/ 1412.0964},
   Key = {fds225992}
}

@article{fds225208,
   Author = {Y. Zhang and R. Durrett},
   Title = {Exact solution for a metapopulation version of Schelling’s
             model},
   Journal = {Proceedings of the National Academy of Science},
   Volume = {111},
   Number = {39},
   Pages = {14036–14041},
   Year = {2014},
   Month = {September},
   url = {http://www.math.duke.edu/~rtd/sch/schfinal.pdf},
   Doi = {10.1073/pnas.1414915111},
   Key = {fds225208}
}

@article{fds225209,
   Author = {Y. Zhang and R. Durrett and T. Liggett},
   Title = {Contact Process with Fast Voting},
   Journal = {Electronic Journal of Probability},
   Volume = {19},
   Number = {28},
   Year = {2014},
   Month = {March},
   url = {http://www.math.duke.edu/~rtd/candv/cplusv-4.pdf},
   Key = {fds225209}
}

@article{fds225210,
   Author = {Y. Zhang and N. Lanchier},
   Title = {Some rigorous results for the stacked contact
             process},
   Year = {2014},
   url = {http://arxiv.org/abs/1410.3842},
   Key = {fds225210}
}

@article{fds224033,
   Author = {Y. Zhang and X. Yin and W. Nolte and S. Tantum},
   Title = {On marine mammal acoustic detection performance bounds
             (conference version)},
   Journal = {167th Meeting of the Acoustical Society of
             America},
   Year = {2014},
   Key = {fds224033}
}

@article{fds225370,
   Author = {Y. Zhang and R. Durrett},
   Title = {Coexistence of Grass, Saplings and Trees in the Staver-Levin
             Forest Model},
   Journal = {Annals of Applied Probability},
   Year = {2014},
   Key = {fds225370}
}


%% Zhou, Mo   
@article{fds360561,
   Author = {Zhou, M and Han, J and Lu, J},
   Title = {ACTOR-CRITIC METHOD FOR HIGH DIMENSIONAL STATIC
             HAMILTON-JACOBI-BELLMAN PARTIAL DIFFERENTIAL EQUATIONS BASED
             ON NEURAL NETWORKS},
   Journal = {Siam Journal on Scientific Computing},
   Volume = {43},
   Number = {6},
   Pages = {A4043-A4066},
   Publisher = {Society for Industrial & Applied Mathematics
             (SIAM)},
   Year = {2021},
   Month = {January},
   url = {http://dx.doi.org/10.1137/21M1402303},
   Abstract = {We propose a novel numerical method for high dimensional
             Hamilton-Jacobi-Bellman (HJB) type elliptic partial
             differential equations (PDEs). The HJB PDEs, reformulated as
             optimal control problems, are tackled by the actor-critic
             framework inspired by reinforcement learning, based on
             neural network parametrization of the value and control
             functions. Within the actor-critic framework, we employ a
             policy gradient approach to improve the control, while for
             the value function, we derive a variance reduced
             least-squares temporal difference method using stochastic
             calculus. To numerically discretize the stochastic control
             problem, we employ an adaptive step size scheme to improve
             the accuracy near the domain boundary. Numerical examples up
             to 20 spatial dimensions including the linear quadratic
             regulators, the stochastic Van der Pol oscillators, the
             diffusive Eikonal equations, and fully nonlinear elliptic
             PDEs derived from a regulator problem are presented to
             validate the effectiveness of our proposed
             method.},
   Doi = {10.1137/21M1402303},
   Key = {fds360561}
}

@article{fds352917,
   Author = {Han, J and Lu, J and Zhou, M},
   Title = {Solving high-dimensional eigenvalue problems using deep
             neural networks: A diffusion Monte Carlo like
             approach},
   Journal = {Journal of Computational Physics},
   Volume = {423},
   Year = {2020},
   Month = {December},
   url = {http://dx.doi.org/10.1016/j.jcp.2020.109792},
   Abstract = {We propose a new method to solve eigenvalue problems for
             linear and semilinear second order differential operators in
             high dimensions based on deep neural networks. The
             eigenvalue problem is reformulated as a fixed point problem
             of the semigroup flow induced by the operator, whose
             solution can be represented by Feynman-Kac formula in terms
             of forward-backward stochastic differential equations. The
             method shares a similar spirit with diffusion Monte Carlo
             but augments a direct approximation to the eigenfunction
             through neural-network ansatz. The criterion of fixed point
             provides a natural loss function to search for parameters
             via optimization. Our approach is able to provide accurate
             eigenvalue and eigenfunction approximations in several
             numerical examples, including Fokker-Planck operator and the
             linear and nonlinear Schrödinger operators in high
             dimensions.},
   Doi = {10.1016/j.jcp.2020.109792},
   Key = {fds352917}
}

 

dept@math.duke.edu
ph: 919.660.2800
fax: 919.660.2821

Mathematics Department
Duke University, Box 90320
Durham, NC 27708-0320