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Publications of Jenny Tung    :chronological  alphabetical  combined  bibtex listing:

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Book Sections/Chapters

  1. Tung, J, Genes revisited: The biodemography of social environmental variation through a functional genomics lens, in Sociality, Hierarchy, Health: Comparative Biodemography: A Collection of Papers (October, 2014), pp. 39-64, National Academies Press, ISBN 0309306612 [doi]
  2. Loisel, DA; Tung, J, Genetic variation in the immune system of old world monkeys: Functional and selective effects, in Primates, Pathogens, and Evolution, edited by Brinkworth, J; Pechenkina, E (January, 2013), pp. 65-90, Springer New York, ISBN 9781461471806 [doi]

Papers Published

  1. Grieneisen, LE; Charpentier, MJE; Alberts, SC; Blekhman, R; Bradburd, G; Tung, J; Archie, EA, Genes, geology and germs: gut microbiota across a primate hybrid zone are explained by site soil properties, not host species., Proceedings of the Royal Society B: Biological Sciences, vol. 286 no. 1901 (April, 2019), pp. 20190431 [doi]  [abs]
  2. Devoto, AE; Santini, JM; Olm, MR; Anantharaman, K; Munk, P; Tung, J; Archie, EA; Turnbaugh, PJ; Seed, KD; Blekhman, R; Aarestrup, FM; Thomas, BC; Banfield, JF, Megaphages infect Prevotella and variants are widespread in gut microbiomes., Nature Microbiology, vol. 4 no. 4 (April, 2019), pp. 693-700 [doi]  [abs]
  3. Vilgalys, TP; Rogers, J; Jolly, CJ; Mukherjee, S; Tung, J, Evolution of DNA Methylation in Papio Baboons., Molecular Biology and Evolution, vol. 36 no. 3 (March, 2019), pp. 527-540 [doi]  [abs]
  4. Wango, TL; Musiega, D; Mundia, CN; Altmann, J; Alberts, SC; Tung, J, Climate and Land Cover Analysis Suggest No Strong Ecological Barriers to Gene Flow in a Natural Baboon Hybrid Zone, International Journal of Primatology, vol. 40 no. 1 (February, 2019), pp. 53-70 [doi]  [abs]
  5. Rogers, J; Raveendran, M; Harris, RA; Mailund, T; Leppälä, K; Athanasiadis, G; Schierup, MH; Cheng, J; Munch, K; Walker, JA; Konkel, MK; Jordan, V; Steely, CJ; Beckstrom, TO; Bergey, C; Burrell, A; Schrempf, D; Noll, A; Kothe, M; Kopp, GH; Liu, Y; Murali, S; Billis, K; Martin, FJ; Muffato, M; Cox, L; Else, J; Disotell, T; Muzny, DM; Phillips-Conroy, J; Aken, B; Eichler, EE; Marques-Bonet, T; Kosiol, C; Batzer, MA; Hahn, MW; Tung, J; Zinner, D; Roos, C; Jolly, CJ; Gibbs, RA; Worley, KC; Baboon Genome Analysis Consortium,, The comparative genomics and complex population history of Papio baboons., Science Advances, vol. 5 no. 1 (January, 2019), pp. eaau6947 [doi]  [abs]
  6. Debray, R; Snyder-Mackler, N; Kohn, JN; Wilson, ME; Barreiro, LB; Tung, J, Social affiliation predicts mitochondrial DNA copy number in female rhesus macaques., Biology Letters, vol. 15 no. 1 (January, 2019), pp. 20180643 [doi]  [abs]
  7. Snyder-Mackler, N; Sanz, J; Kohn, JN; Voyles, T; Pique-Regi, R; Wilson, ME; Barreiro, LB; Tung, J, Social status alters chromatin accessibility and the gene regulatory response to glucocorticoid stimulation in rhesus macaques., Proceedings of the National Academy of Sciences of the United States of America, vol. 116 no. 4 (January, 2019), pp. 1219-1228 [doi]  [abs]
  8. Snyder-Mackler, N; Voyles, T; Tung, J, Generating RNA Baits for Capture-Based Enrichment., Methods in Molecular Biology (Clifton, N.J.), vol. 1963 (January, 2019), pp. 107-120 [doi]  [abs]
  9. Lea, AJ; Vockley, CM; Johnston, RA; Del Carpio, CA; Barreiro, LB; Reddy, TE; Tung, J, Genome-wide quantification of the effects of DNA methylation on human gene regulation., Elife, vol. 7 (December, 2018) [doi]  [abs]
  10. Lea, AJ; Akinyi, MY; Nyakundi, R; Mareri, P; Nyundo, F; Kariuki, T; Alberts, SC; Archie, EA; Tung, J, Dominance rank-associated gene expression is widespread, sex-specific, and a precursor to high social status in wild male baboons., Proceedings of the National Academy of Sciences of the United States of America, vol. 115 no. 52 (December, 2018), pp. E12163-E12171 [doi]  [abs]
  11. Lea, A; Akinyi, M; Nyakundi, R; Mareri, P; Nyundo, F; Kariuki, T; Alberts, S; Archie, E; Tung, J, Dominance rank-associated immune gene expression is widespread, sex-specific, and a precursor to high social status in wild male baboons (July, 2018) [doi]  [abs]
  12. Tung, J; Barreiro, LB, The contribution of admixture to primate evolution., Current Opinion in Genetics & Development, vol. 47 (December, 2017), pp. 61-68 [doi]  [abs]
  13. Grieneisen, LE; Livermore, J; Alberts, S; Tung, J; Archie, EA, Group Living and Male Dispersal Predict the Core Gut Microbiome in Wild Baboons., Integrative and Comparative Biology, vol. 57 no. 4 (October, 2017), pp. 770-785 [doi]  [abs]
  14. Steely, CJ; Walker, JA; Jordan, VE; Beckstrom, TO; McDaniel, CL; St Romain, CP; Bennett, EC; Robichaux, A; Clement, BN; Raveendran, M; Baboon Genome Analysis Consortium, ; Worley, KC; Phillips-Conroy, J; Jolly, CJ; Rogers, J; Konkel, MK; Batzer, MA, Alu Insertion Polymorphisms as Evidence for Population Structure in Baboons., Genome Biology and Evolution, vol. 9 no. 9 (September, 2017), pp. 2418-2427 [doi]  [abs]
  15. Lea, AJ; Vilgalys, TP; Durst, PAP; Tung, J, Maximizing ecological and evolutionary insight in bisulfite sequencing data sets., Nature Ecology and Evolution, vol. 1 no. 8 (August, 2017), pp. 1074-1083 [doi]  [abs]
  16. Snyder-Mackler, N; Tung, J, Vasopressin and the Neurogenetics of Parental Care., Neuron, vol. 95 no. 1 (July, 2017), pp. 9-11 [doi]  [abs]
  17. Sun, S; Hood, M; Scott, L; Peng, Q; Mukherjee, S; Tung, J; Zhou, X, Differential expression analysis for RNAseq using Poisson mixed models., Nucleic Acids Research, vol. 45 no. 11 (June, 2017), pp. e106 [doi]  [abs]
  18. Miller, EA; Livermore, JA; Alberts, SC; Tung, J; Archie, EA, Ovarian cycling and reproductive state shape the vaginal microbiota in wild baboons., Microbiome, vol. 5 no. 1 (January, 2017), pp. 8 [doi]  [abs]
  19. Lea, AJ; Tung, J; Archie, EA; Alberts, SC, Developmental plasticity: Bridging research in evolution and human health., Evolution, Medicine, and Public Health, vol. 2017 no. 1 (January, 2017), pp. 162-175 [doi]  [abs]
  20. Lea, AJ; Tung, J; Archie, EA; Alberts, SC, Developmental plasticity research in evolution and human health: Response to commentaries., Evolution, Medicine, and Public Health, vol. 2017 no. 1 (January, 2017), pp. 201-205 [doi]
  21. Kohn, JN; Snyder-Mackler, N; Barreiro, LB; Johnson, ZP; Tung, J; Wilson, ME, Dominance rank causally affects personality and glucocorticoid regulation in female rhesus macaques., Psychoneuroendocrinology, vol. 74 (December, 2016), pp. 179-188 [doi]  [abs]
  22. Snyder-Mackler, N; Sanz, J; Kohn, JN; Brinkworth, JF; Morrow, S; Shaver, AO; Grenier, J-C; Pique-Regi, R; Johnson, ZP; Wilson, ME; Barreiro, LB; Tung, J, Social status alters immune regulation and response to infection in macaques., Science (New York, N.Y.), vol. 354 no. 6315 (November, 2016), pp. 1041-1045 [doi]  [abs]
  23. Nédélec, Y; Sanz, J; Baharian, G; Szpiech, ZA; Pacis, A; Dumaine, A; Grenier, J-C; Freiman, A; Sams, AJ; Hebert, S; Pagé Sabourin, A; Luca, F; Blekhman, R; Hernandez, RD; Pique-Regi, R; Tung, J; Yotova, V; Barreiro, LB, Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens., Cell, vol. 167 no. 3 (October, 2016), pp. 657-669.e21 [doi]  [abs]
  24. Blekhman, R; Tang, K; Archie, EA; Barreiro, LB; Johnson, ZP; Wilson, ME; Kohn, J; Yuan, ML; Gesquiere, L; Grieneisen, LE; Tung, J, Common methods for fecal sample storage in field studies yield consistent signatures of individual identity in microbiome sequencing data., Scientific Reports, vol. 6 (August, 2016), pp. 31519 [doi]  [abs]
  25. Charruau, P; Johnston, RA; Stahler, DR; Lea, A; Snyder-Mackler, N; Smith, DW; vonHoldt, BM; Cole, SW; Tung, J; Wayne, RK, Pervasive Effects of Aging on Gene Expression in Wild Wolves., Molecular Biology and Evolution, vol. 33 no. 8 (August, 2016), pp. 1967-1978 [doi]  [abs]
  26. Wall, JD; Schlebusch, SA; Alberts, SC; Cox, LA; Snyder-Mackler, N; Nevonen, KA; Carbone, L; Tung, J, Genomewide ancestry and divergence patterns from low-coverage sequencing data reveal a complex history of admixture in wild baboons., Molecular Ecology, vol. 25 no. 14 (July, 2016), pp. 3469-3483 [doi]  [abs]
  27. Snyder-Mackler, N; Majoros, WH; Yuan, ML; Shaver, AO; Gordon, JB; Kopp, GH; Schlebusch, SA; Wall, JD; Alberts, SC; Mukherjee, S; Zhou, X; Tung, J, Efficient Genome-Wide Sequencing and Low-Coverage Pedigree Analysis from Noninvasively Collected Samples., Genetics, vol. 203 no. 2 (June, 2016), pp. 699-714 [doi]  [abs]
  28. Tung, J; Archie, EA; Altmann, J; Alberts, SC, Cumulative early life adversity predicts longevity in wild baboons., Nature Communications, vol. 7 (April, 2016), pp. 11181 [doi]  [abs]
  29. Lea, AJ; Altmann, J; Alberts, SC; Tung, J, Resource base influences genome-wide DNA methylation levels in wild baboons (Papio cynocephalus)., Molecular Ecology, vol. 25 no. 8 (April, 2016), pp. 1681-1696 [doi]  [abs]
  30. Snyder-Mackler, N; Kohn, JN; Barreiro, LB; Johnson, ZP; Wilson, ME; Tung, J, Social status drives social relationships in groups of unrelated female rhesus macaques., Animal Behaviour, vol. 111 (January, 2016), pp. 307-317 [doi]  [abs]
  31. Archie, EA; Tung, J, Social behavior and the microbiome, Current Opinion in Behavioral Sciences, vol. 6 (December, 2015), pp. 28-34, Elsevier BV, ISSN 2352-1546 [doi]  [abs]
  32. Pacis, A; Tailleux, L; Morin, AM; Lambourne, J; MacIsaac, JL; Yotova, V; Dumaine, A; Danckaert, A; Luca, F; Grenier, J-C; Hansen, KD; Gicquel, B; Yu, M; Pai, A; He, C; Tung, J; Pastinen, T; Kobor, MS; Pique-Regi, R; Gilad, Y; Barreiro, LB, Bacterial infection remodels the DNA methylation landscape of human dendritic cells., Genome Research, vol. 25 no. 12 (December, 2015), pp. 1801-1811 [doi]  [abs]
  33. Lea, AJ; Tung, J; Zhou, X, A Flexible, Efficient Binomial Mixed Model for Identifying Differential DNA Methylation in Bisulfite Sequencing Data., Plos Genetics, vol. 11 no. 11 (November, 2015), pp. e1005650 [doi]  [abs]
  34. Franz, M; McLean, E; Tung, J; Altmann, J; Alberts, SC, Self-organizing dominance hierarchies in a wild primate population., Proceedings of the Royal Society B: Biological Sciences, vol. 282 no. 1814 (September, 2015), ISSN 0962-8452 [doi]  [abs]
  35. Lea, AJ; Altmann, J; Alberts, SC; Tung, J, Developmental constraints in a wild primate., The American Naturalist, vol. 185 no. 6 (June, 2015), pp. 809-821, ISSN 0003-0147 [doi]  [abs]
  36. Tung, J; Barreiro, LB; Burns, MB; Grenier, J-C; Lynch, J; Grieneisen, LE; Altmann, J; Alberts, SC; Blekhman, R; Archie, EA, Social networks predict gut microbiome composition in wild baboons., Elife, vol. 4 (March, 2015) [doi]  [abs]
  37. Tung, J; Zhou, X; Alberts, SC; Stephens, M; Gilad, Y, The genetic architecture of gene expression levels in wild baboons., Elife, vol. 4 (February, 2015) [doi]  [abs]
  38. Galbany, J; Tung, J; Altmann, J; Alberts, SC, Canine length in wild male baboons: maturation, aging and social dominance rank., Plos One, vol. 10 no. 5 (January, 2015), pp. e0126415 [doi]  [abs]
  39. Archie, EA; Tung, J; Clark, M; Altmann, J; Alberts, SC, Social affiliation matters: both same-sex and opposite-sex relationships predict survival in wild female baboons., Proceedings of the Royal Society B: Biological Sciences, vol. 281 no. 1793 (October, 2014), ISSN 0962-8452 [doi]  [abs]
  40. Snyder-Mackler, N; Somel, M; Tung, J, Shared signatures of social stress and aging in peripheral blood mononuclear cell gene expression profiles., Aging Cell, vol. 13 no. 5 (October, 2014), pp. 954-957, ISSN 1474-9718 [doi]  [abs]
  41. Gallego Romero, I; Pai, AA; Tung, J; Gilad, Y, RNA-seq: impact of RNA degradation on transcript quantification., Bmc Biology, vol. 12 (May, 2014), pp. 42 [doi]  [abs]
  42. Tung, J; Gilad, Y, Social environmental effects on gene regulation, Cellular and Molecular Life Sciences, vol. 70 no. 22 (November, 2013), pp. 4323-4339, ISSN 1420-682X [10.1007%2Fs00018-013-1357-6], [doi]  [abs]
  43. Runcie, DE; Wiedmann, RT; Archie, EA; Altmann, J; Wray, GA; Alberts, SC; Tung, J, Social environment influences the relationship between genotype and gene expression in wild baboons., Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol. 368 no. 1618 (May, 2013), pp. 20120345 [23569293], [doi]  [abs]
  44. Akinyi, MY; Tung, J; Jeneby, M; Patel, NB; Altmann, J; Alberts, SC, Role of Grooming in Reducing Tick Load in Wild Baboons (Papio cynocephalus)., Animal Behaviour, vol. 85 no. 3 (March, 2013), pp. 559-568 [doi]  [abs]
  45. M. Akinyi, J. Tung, M. Jenneby, N.B.Patel, J. Altmann, S.C.Alberts, Role of grooming in reducing tick burdens in wild baboons, Animal Behavior, vol. 85 (2013), pp. 559-568  [abs]
  46. Barreiro, LB; Tung, J, Getting under—and through—the skin: ecological genomics of chytridiomycosis infection in frogs., Molecular Ecology, vol. 21 no. 13 (July, 2012), pp. 3095-3097, ISSN 0962-1083 [doi]  [abs]
  47. Tung, J; Charpentier, MJE; Mukherjee, S; Altmann, J; Alberts, SC, Genetic effects on mating success and partner choice in a social mammal., The American Naturalist, vol. 180 no. 1 (July, 2012), pp. 113-129 [22673655], [doi]  [abs]
  48. Tung, J; Barreiro, LB; Johnson, ZP; Hansen, KD; Michopoulos, V; Toufexis, D; Michelini, K; Wilson, ME; Gilad, Y, Social environment is associated with gene regulatory variation in the rhesus macaque immune system., Proceedings of the National Academy of Sciences of the United States of America, vol. 109 no. 17 (April, 2012), pp. 6490-6495 [22493251], [doi]  [abs]
  49. Charpentier, MJE; Fontaine, MC; Cherel, E; Renoult, JP; Jenkins, T; Benoit, L; Barthès, N; Alberts, SC; Tung, J, Genetic structure in a dynamic baboon hybrid zone corroborates behavioural observations in a hybrid population., Molecular Ecology, vol. 21 no. 3 (February, 2012), pp. 715-731, ISSN 0962-1083 [doi]  [abs]
  50. Harper, KN; Fyumagwa, RD; Hoare, R; Wambura, PN; Coppenhaver, DH; Sapolsky, RM; Alberts, SC; Tung, J; Rogers, J; Kilewo, M; Batamuzi, EK; Leendertz, FH; Armelagos, GJ; Knauf, S, Treponema pallidum infection in the wild baboons of East Africa: distribution and genetic characterization of the strains responsible., Plos One, vol. 7 no. 12 (January, 2012), pp. e50882, ISSN 1932-6203 [Gateway.cgi], [doi]  [abs]
  51. Babbitt, CC; Tung, J; Wray, GA; Alberts, SC, Changes in gene expression associated with reproductive maturation in wild female baboons., Genome Biology and Evolution, vol. 4 no. 2 (January, 2012), pp. 102-109, ISSN 1759-6653 [doi]  [abs]
  52. Tung, J; Akinyi, MY; Mutura, S; Altmann, J; Wray, GA; Alberts, SC, Allele-specific gene expression in a wild nonhuman primate population., Molecular Ecology, vol. 20 no. 4 (February, 2011), pp. 725-739 [21226779], [doi]  [abs]
  53. Tung, J; Alberts, SC; Wray, GA, Evolutionary genetics in wild primates: combining genetic approaches with field studies of natural populations., Trends in Genetics : Tig, vol. 26 no. 8 (August, 2010), pp. 353-362, ISSN 0168-9525 [20580115], [doi]  [abs]
  54. Tung, J; Wray, GA, Evolution of Traits Deduced from Genome Comparisons, in The Encyclopedia of Life Sciences (2009), JOHN WILEY & SONS LTD [doi]
  55. Tung, J; Fédrigo, O; Haygood, R; Mukherjee, S; Wray, GA, Genomic features that predict allelic imbalance in humans suggest patterns of constraint on gene expression variation., Molecular Biology and Evolution, vol. 26 no. 9 (September, 2009), pp. 2047-2059 [19506001], [doi]  [abs]
  56. Tung, J; Primus, A; Bouley, AJ; Severson, TF; Alberts, SC; Wray, GA, Evolution of a malaria resistance gene in wild primates., Nature, vol. 460 no. 7253 (July, 2009), pp. 388-391 [19553936], [doi]  [abs]
  57. Leonhardt, SD; Tung, J; Camden, JB; Leal, M; Drea, CM, Seeing red: Behavioral evidence of trichromatic color vision in strepsirrhine primates, Behavioral Ecology, vol. 20 no. 1 (January, 2009), pp. 1-12, Oxford University Press (OUP), ISSN 1045-2249 [doi]  [abs]
  58. Tung, J; Charpentier, MJE; Garfield, DA; Altmann, J; Alberts, SC, Genetic evidence reveals temporal change in hybridization patterns in a wild baboon population., Molecular Ecology, vol. 17 no. 8 (April, 2008), pp. 1998-2011 [18363664], [doi]  [abs]
  59. Charpentier, MJE; Tung, J; Altmann, J; Alberts, SC, Age at maturity in wild baboons: genetic, environmental and demographic influences., Molecular Ecology, vol. 17 no. 8 (April, 2008), pp. 2026-2040 [18346122], [doi]  [abs]
  60. Tung, J; Rudolph, J; Altmann, J; Alberts, SC, Parallel effects of genetic variation in ACE activity in baboons and humans., American Journal of Physical Anthropology, vol. 134 no. 1 (September, 2007), pp. 1-8, ISSN 0002-9483 [17503445], [doi]  [abs]

Papers Submitted

  1. N.M. Snyder-Mackler, M. Somel, J. Tung, Shared signatures of social stress and aging in PBMC gene expression profiles. (2013)  [abs]

Papers Presented/Symposia/Abstracts

  1. Archie, EA; Tung, J; Blekhman, R; Barreiro, L; Grieneisen, L; Alberts, SC; Altmann, J, Socially structured gut microbiomes in wild baboons, Integrative and Comparative Biology, vol. 57 (March, 2017), pp. E194-E194, OXFORD UNIV PRESS INC
  2. Miller, CM; Snyder-Mackler, N; Nga, N; Fashing, PJ; Tung, J; Gustison, ML; Wilson, ML, Male reproductive strategies and paternity success in the multilevel social system of gelada monkeys from Guassa, Menz Highlands, Ethiopia, American Journal of Physical Anthropology, vol. 159 (March, 2016), pp. 230-230, WILEY-BLACKWELL
  3. Snyder-Mackler, N; Kohn, J; Moore, C; Johnson, ZP; Wilson, ME; Tung, J, Dominance rank and rank disparity predict female rhesus macaque social relationships even in the absence of kin networks, American Journal of Physical Anthropology, vol. 156 (March, 2015), pp. 293-293, WILEY-BLACKWELL, ISSN 0002-9483 [Gateway.cgi]
  4. Tung, J, INSIGHTS FROM PRIMATE MODELS FOR HUMAN SOCIALITY: SYNERGIES BETWEEN STUDIES IN CAPTIVITY AND THE FIELD, American Journal of Primatology, vol. 76 (September, 2014), pp. 47-47, WILEY-BLACKWELL, ISSN 0275-2565 [Gateway.cgi]
  5. Tung, J; Lea, AJ; Altmann, J; Alberts, SC, Social and ecological predictors of DNA methylation in wild baboons, American Journal of Physical Anthropology, vol. 153 (March, 2014), pp. 256-256, WILEY-BLACKWELL, ISSN 0002-9483 [Gateway.cgi]
  6. Tung, J; Alberts, SC; Wray, GA, Evolution of functional genetic variation at immune loci in wild baboons., American Journal of Physical Anthropology (January, 2010), pp. 231-231, WILEY-LISS, ISSN 0002-9483 [Gateway.cgi]

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