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Publications of Francois M. Lutzoni    :chronological  alphabetical  combined  bibtex listing:

Books

  1. Taylor, J. W., Spatafora, J., O’Donnell, K., Lutzoni, F., James, T., Hibbett, D. S., Geiser, D., Bruns, T. D. and Blackwell, M., The Fungi, in Assembling the Tree of Life, edited by J. Cracraft and M. J. Donoghue (2004), pp. 171-194, Oxford University Press, Oxford, UK
  2. Lutzoni, F., Lichens, in Encyclopedia of Evolution, edited by M. Pagel, vol. 2 (2002), pp. 618-622, Oxford University Press, Oxford, UK
  3. Pagel, M. and Lutzoni, F., Accounting for phylogenetic uncertainty in comparative studies of evolution and adaptation, in Biological Evolution and Statistical Physics, edited by M. Laessig and A. Valleriani (2002), pp. 151-164, Springer Verlag, Berlin, Germany
  4. Kranner, I., and Lutzoni, F., Evolutionary consequences of transition to a lichen symbiotic state and physiological adaptation to oxidative damage associated with poikilohydry, in Plant response to environmental stresses: From phytohormones to genome reorganization., edited by H. R. Lerner (1999), pp. 591-698, Marcel Dekker, New York

Papers Published

  1. U'Ren, JM; Oita, S; Lutzoni, F; Miadlikowska, J; Ball, B; Carbone, I; May, G; Zimmerman, NB; Valle, D; Trouet, V; Arnold, AE, Environmental drivers and cryptic biodiversity hotspots define endophytes in Earth's largest terrestrial biome., Current biology : CB, vol. 34 no. 5 (March, 2024), pp. 1148-1156.e7 [doi]  [abs]
  2. Medeiros, ID; Ibáñez, A; Arnold, AE; Hedderson, TA; Miadlikowska, J; Flakus, A; Carbone, I; LaGreca, S; Magain, N; Mazur, E; Castillo, RV; Geml, J; Kaup, M; Maggs-Kölling, G; Oita, S; Sathiya Seelan, JS; Terlova, E; Hom, EFY; Lewis, LA; Lutzoni, F, Eco-phylogenetic study of Trebouxia in southern Africa reveals interbiome connectivity and potential endemism in a green algal lichen photobiont, American Journal of Botany (January, 2024) [doi]  [abs]
  3. Magain, N; Miadlikowska, J; Goffinet, B; Goward, T; Pardo-De la Hoz, CJ; Jüriado, I; Simon, A; Mercado-Díaz, JA; Barlow, T; Moncada, B; Lücking, R; Spielmann, A; Canez, L; Wang, LS; Nelson, P; Wheeler, T; Lutzoni, F; Sérusiaux, E, High species richness in the lichen genus Peltigera (Ascomycota, Lecanoromycetes): 34 species in the dolichorhizoid and scabrosoid clades of section Polydactylon, including 24 new to science, Persoonia: Molecular Phylogeny and Evolution of Fungi, vol. 51 (December, 2023), pp. 1-88 [doi]  [abs]
  4. Miadlikowska, J; Magain, N; Medeiros, ID; Pardo-De La Hoz, CJ; Carbone, I; Lagreca, S; Barlow, T; Myllys, L; Schmull, M; Lutzoni, F, Towards a nomenclatural clarification of the Peltigera ponojensis/monticola clade including metagenomic sequencing of type material and the introduction of P. globulata Miadl. & Magain sp. nov., Lichenologist, vol. 55 no. 5 (September, 2023), pp. 315-324 [doi]  [abs]
  5. Pardo-De la Hoz, CJ; Magain, N; Piatkowski, B; Cornet, L; Dal Forno, M; Carbone, I; Miadlikowska, J; Lutzoni, F, Ancient Rapid Radiation Explains Most Conflicts Among Gene Trees and Well-Supported Phylogenomic Trees of Nostocalean Cyanobacteria., Systematic biology, vol. 72 no. 3 (June, 2023), pp. 694-712 [doi]  [abs]
  6. Medeiros, ID; Lutzoni, F, Contribution to a modern treatment of Graphidaceae biodiversity in South Africa: genera of tribe Graphideae with hyaline ascospores, Lichenologist, vol. 54 no. 5 (September, 2022), pp. 253-270 [doi]  [abs]
  7. Chen, K-H; Liao, H-L; Arnold, AE; Korotkin, HB; Wu, SH; Matheny, PB; Lutzoni, F, Comparative transcriptomics of fungal endophytes in co-culture with their moss host Dicranum scoparium reveals fungal trophic lability and moss unchanged to slightly increased growth rates., The New phytologist, vol. 234 no. 5 (June, 2022), pp. 1832-1847 [doi]  [abs]
  8. Geml, J; Arnold, AE; Semenova-Nelsen, TA; Nouhra, ER; Drechsler-Santos, ER; Góes-Neto, A; Morgado, LN; Ódor, P; Hegyi, B; Oriol, G; Ibáñez, A; Tedersoo, L; Lutzoni, F, Community dynamics of soil-borne fungal communities along elevation gradients in neotropical and palaeotropical forests., Molecular ecology, vol. 31 no. 7 (April, 2022), pp. 2044-2060 [doi]  [abs]
  9. Franco, MEE; Wisecaver, JH; Arnold, AE; Ju, Y-M; Slot, JC; Ahrendt, S; Moore, LP; Eastman, KE; Scott, K; Konkel, Z; Mondo, SJ; Kuo, A; Hayes, RD; Haridas, S; Andreopoulos, B; Riley, R; LaButti, K; Pangilinan, J; Lipzen, A; Amirebrahimi, M; Yan, J; Adam, C; Keymanesh, K; Ng, V; Louie, K; Northen, T; Drula, E; Henrissat, B; Hsieh, H-M; Youens-Clark, K; Lutzoni, F; Miadlikowska, J; Eastwood, DC; Hamelin, RC; Grigoriev, IV; U'Ren, JM, Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes., The New phytologist, vol. 233 no. 3 (February, 2022), pp. 1317-1330 [doi]  [abs]
  10. Pardo-De la Hoz, CJ; Medeiros, ID; Gibert, JP; Chagnon, P-L; Magain, N; Miadlikowska, J; Lutzoni, F, Phylogenetic structure of specialization: A new approach that integrates partner availability and phylogenetic diversity to quantify biotic specialization in ecological networks., Ecology and evolution, vol. 12 no. 3 (February, 2022), pp. e8649 [doi]  [abs]
  11. Cornet, L; Magain, N; Baurain, D; Lutzoni, F, Exploring syntenic conservation across genomes for phylogenetic studies of organisms subjected to horizontal gene transfers: A case study with Cyanobacteria and cyanolichens., Molecular phylogenetics and evolution, vol. 162 (September, 2021), pp. 107100 [doi]  [abs]
  12. Crous, PW; Hernández-Restrepo, M; Schumacher, RK; Cowan, DA; Maggs-Kölling, G; Marais, E; Wingfield, MJ; Yilmaz, N; Adan, OCG; Akulov, A; Duarte, EÁ; Berraf-Tebbal, A; Bulgakov, TS; Carnegie, AJ; de Beer, ZW; Decock, C; Dijksterhuis, J; Duong, TA; Eichmeier, A; Hien, LT; Houbraken, JAMP; Khanh, TN; Liem, NV; Lombard, L; Lutzoni, FM; Miadlikowska, JM; Nel, WJ; Pascoe, IG; Roets, F; Roux, J; Samson, RA; Shen, M; Spetik, M; Thangavel, R; Thanh, HM; Thao, LD; van Nieuwenhuijzen, EJ; Zhang, JQ; Zhang, Y; Zhao, LL; Groenewald, JZ, New and Interesting Fungi. 4., Fungal systematics and evolution, vol. 7 (June, 2021), pp. 255-343 [doi]  [abs]
  13. Oita, S; Ibáñez, A; Lutzoni, F; Miadlikowska, J; Geml, J; Lewis, LA; Hom, EFY; Carbone, I; U'Ren, JM; Arnold, AE, Climate and seasonality drive the richness and composition of tropical fungal endophytes at a landscape scale., Communications biology, vol. 4 no. 1 (March, 2021), pp. 313 [doi]  [abs]
  14. Medeiros, ID; Mazur, E; Miadlikowska, J; Flakus, A; Rodriguez-Flakus, P; Pardo-De la Hoz, CJ; Cieślak, E; Śliwa, L; Lutzoni, F, Turnover of Lecanoroid Mycobionts and Their Trebouxia Photobionts Along an Elevation Gradient in Bolivia Highlights the Role of Environment in Structuring the Lichen Symbiosis., Frontiers in microbiology, vol. 12 (January, 2021), pp. 774839 [doi]  [abs]
  15. Haridas, S; Albert, R; Binder, M; Bloem, J; LaButti, K; Salamov, A; Andreopoulos, B; Baker, SE; Barry, K; Bills, G; Bluhm, BH; Cannon, C; Castanera, R; Culley, DE; Daum, C; Ezra, D; González, JB; Henrissat, B; Kuo, A; Liang, C; Lipzen, A; Lutzoni, F; Magnuson, J; Mondo, SJ; Nolan, M; Ohm, RA; Pangilinan, J; Park, H-J; Ramírez, L; Alfaro, M; Sun, H; Tritt, A; Yoshinaga, Y; Zwiers, L-H; Turgeon, BG; Goodwin, SB; Spatafora, JW; Crous, PW; Grigoriev, IV, 101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens., Studies in mycology, vol. 96 (June, 2020), pp. 141-153 [doi]  [abs]
  16. Miadlikowska, J; Magain, N; Buck, WR; Castillo, RV; Barlow, GT; Pardo-De la Hoz, CJ; LaGreca, S; Lutzoni, F, Peltigera hydrophila (Lecanoromycetes, Ascomycota), a new semi-aquatic cyanolichen species from Chile, Plant and Fungal Systematics, vol. 65 no. 1 (June, 2020), pp. 210-218 [doi]  [abs]
  17. Magain, N; Goffinet, B; Simon, A; Seelan, JSS; Medeiros, ID; Lutzoni, F; Miadlikowska, J, Peltigera serusiauxii (Lecanoromycetes, Ascomycota), a new species from Papua New Guinea and Malaysia, Plant and Fungal Systematics, vol. 65 no. 1 (June, 2020), pp. 139-146 [doi]  [abs]
  18. Darnajoux, R; Magain, N; Renaudin, M; Lutzoni, F; Bellenger, J-P; Zhang, X, Molybdenum threshold for ecosystem scale alternative vanadium nitrogenase activity in boreal forests., Proceedings of the National Academy of Sciences of the United States of America, vol. 116 no. 49 (December, 2019), pp. 24682-24688 [doi]  [abs]
  19. Flakus, A; Etayo, J; Miadlikowska, J; Lutzoni, F; Kukwa, M; Matura, N; Rodriguez-Flakus, P, Biodiversity assessment of ascomycetes inhabiting Lobariella lichens in Andean cloud forests led to one new family, three new genera and 13 new species of lichenicolous fungi, Plant and Fungal Systematics, vol. 64 no. 2 (December, 2019), pp. 283-344 [doi]  [abs]
  20. U'Ren, JM; Lutzoni, F; Miadlikowska, J; Zimmerman, NB; Carbone, I; May, G; Arnold, AE, Host availability drives distributions of fungal endophytes in the imperilled boreal realm., Nature ecology & evolution, vol. 3 no. 10 (October, 2019), pp. 1430-1437 [doi]  [abs]
  21. Armaleo, D; Müller, O; Lutzoni, F; Andrésson, ÓS; Blanc, G; Bode, HB; Collart, FR; Dal Grande, F; Dietrich, F; Grigoriev, IV; Joneson, S; Kuo, A; Larsen, PE; Logsdon, JM; Lopez, D; Martin, F; May, SP; McDonald, TR; Merchant, SS; Miao, V; Morin, E; Oono, R; Pellegrini, M; Rubinstein, N; Sanchez-Puerta, MV; Savelkoul, E; Schmitt, I; Slot, JC; Soanes, D; Szövényi, P; Talbot, NJ; Veneault-Fourrey, C; Xavier, BB, The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata., BMC Genomics, vol. 20 no. 1 (July, 2019), pp. 605 [doi]  [abs]
  22. Chen, K-H; Liao, H-L; Bellenger, J-P; Lutzoni, F, Differential gene expression associated with fungal trophic shifts along the senescence gradient of the moss Dicranum scoparium., Environmental microbiology, vol. 21 no. 7 (July, 2019), pp. 2273-2289 [doi]  [abs]
  23. Chagnon, PL; Magain, N; Miadlikowska, J; Lutzoni, F, Species diversification and phylogenetically constrained symbiont switching generated high modularity in the lichen genus Peltigera, Journal of Ecology, vol. 107 no. 4 (July, 2019), pp. 1645-1661 [doi]  [abs]
  24. Carbone, I; White, JB; Miadlikowska, J; Arnold, AE; Miller, MA; Magain, N; U'Ren, JM; Lutzoni, F, T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees., Microbiology resource announcements, vol. 8 no. 29 (July, 2019), pp. e00328-e00319 [doi]  [abs]
  25. Lutzoni, F; Nowak, MD; Alfaro, ME; Reeb, V; Miadlikowska, J; Krug, M; Arnold, AE; Lewis, LA; Swofford, DL; Hibbett, D; Hilu, K; James, TY; Quandt, D; Magallón, S, Contemporaneous radiations of fungi and plants linked to symbiosis., Nature communications, vol. 9 no. 1 (December, 2018), pp. 5451 [doi]  [abs]
  26. Miadlikowska, J; Magain, N; Pardo-De La Hoz, CJ; Niu, D; Goward, T; Sérusiaux, E; Lutzoni, F, Species in section Peltidea (aphthosa group) of the genus Peltigera remain cryptic after molecular phylogenetic revision, Plant and Fungal Systematics, vol. 63 no. 2 (December, 2018), pp. 45-64 [doi]  [abs]
  27. Hoz, CJPDL; Magain, N; Lutzoni, F; Goward, T; Restrepo, S; Miadlikowska, J, Contrasting Symbiotic Patterns in Two Closely Related Lineages of Trimembered Lichens of the Genus Peltigera, Frontiers in Microbiology, vol. 9 no. NOV (November, 2018), FRONTIERS MEDIA SA [doi]  [abs]
  28. Korotkin, HB; Swenie, RA; Miettinen, O; Budke, JM; Chen, K-H; Lutzoni, F; Smith, ME; Matheny, PB, Stable isotope analyses reveal previously unknown trophic mode diversity in the Hymenochaetales., American journal of botany, vol. 105 no. 11 (November, 2018), pp. 1869-1887 [doi]  [abs]
  29. Magain, N; Truong, C; Goward, T; Niu, D; Goffinet, B; Sérusiaux, E; Vitikainen, O; Lutzoni, F; Miadlikowska, J, Species delimitation at a global scale reveals high species richness with complex biogeography and patterns of symbiont association in peltigera section peltigera (Lichenized ascomycota: Lecanoromycetes), Taxon, vol. 67 no. 5 (October, 2018), pp. 836-870, WILEY [doi]  [abs]
  30. Chagnon, PL; Magain, N; Miadlikowska, J; Lutzoni, F, Strong specificity and network modularity at a very fine phylogenetic scale in the lichen genus Peltigera., Oecologia, vol. 187 no. 3 (July, 2018), pp. 767-782, Springer Nature [doi]  [abs]
  31. Lu, J; Magain, N; Miadlikowska, J; Coyle, JR; Truong, C; Lutzoni, F, Bioclimatic factors at an intrabiome scale are more limiting than cyanobiont availability for the lichen-forming genus Peltigera., American journal of botany, vol. 105 no. 7 (July, 2018), pp. 1198-1211 [doi]  [abs]
  32. Chen, K-H; Liao, H-L; Arnold, AE; Bonito, G; Lutzoni, F, RNA-based analyses reveal fungal communities structured by a senescence gradient in the moss Dicranum scoparium and the presence of putative multi-trophic fungi., The New phytologist, vol. 218 no. 4 (June, 2018), pp. 1597-1611, WILEY [doi]  [abs]
  33. Kauff, F; Bachran, A; Schultz, M; Hofstetter, V; Lutzoni, F; Büdel, B, Molecular data favours a monogeneric Peltulaceae (Lichinomycetes), Lichenologist, vol. 50 no. 3 (May, 2018), pp. 313-327, Cambridge University Press (CUP) [doi]  [abs]
  34. Magain, N; Miadlikowska, J; Mueller, O; Gajdeczka, M; Truong, C; Salamov, AA; Dubchak, I; Grigoriev, IV; Goffinet, B; Sérusiaux, E; Lutzoni, F, Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon., Molecular phylogenetics and evolution, vol. 117 (December, 2017), pp. 10-29 [doi]  [abs]
  35. Heiđmarsson, S; Gueidan, C; Miadlikowska, J; Lutzoni, F, Multi-locus phylogeny supports the placement of endocarpon pulvinatum within staurothele s. Str. (lichenised ascomycetes, eurotiomycetes, verrucariaceae), Phytotaxa, vol. 306 no. 1 (May, 2017), pp. 37-48, MAGNOLIA PRESS [doi]  [abs]
  36. Carbone, I; White, JB; Miadlikowska, J; Arnold, AE; Miller, MA; Kauff, F; U'Ren, JM; May, G; Lutzoni, F, T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life., Bioinformatics (Oxford, England), vol. 33 no. 8 (April, 2017), pp. 1160-1168 [doi]  [abs]
  37. Darnajoux, R; Zhang, X; McRose, DL; Miadlikowska, J; Lutzoni, F; Kraepiel, AML; Bellenger, J-P, Biological nitrogen fixation by alternative nitrogenases in boreal cyanolichens: importance of molybdenum availability and implications for current biological nitrogen fixation estimates., The New phytologist, vol. 213 no. 2 (January, 2017), pp. 680-689 [doi]  [abs]
  38. Hestmark, G; Lutzoni, F; Miadlikowska, J, Photobiont associations in co-occurring umbilicate lichens with contrasting modes of reproduction in coastal Norway, Lichenologist, vol. 48 no. 5 (September, 2016), pp. 545-557, Cambridge University Press (CUP) [doi]  [abs]
  39. van Nieuwenhuijzen, EJ; Miadlikowska, JM; Houbraken, JAMP; Adan, OCG; Lutzoni, FM; Samson, RA, Wood staining fungi revealed taxonomic novelties in Pezizomycotina: New order Superstratomycetales and new species Cyanodermella oleoligni., Studies in mycology, vol. 85 (September, 2016), pp. 107-124 [doi]  [abs]
  40. Chagnon, P-L; U'Ren, JM; Miadlikowska, J; Lutzoni, F; Arnold, AE, Erratum to: Interaction type influences ecological network structure more than local abiotic conditions: evidence from endophytic and endolichenic fungi at a continental scale., Oecologia, vol. 181 no. 2 (June, 2016), pp. 633, Springer Nature [doi]
  41. U'Ren, JM; Miadlikowska, J; Zimmerman, NB; Lutzoni, F; Stajich, JE; Arnold, AE, Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota)., Molecular phylogenetics and evolution, vol. 98 (May, 2016), pp. 210-232 [doi]  [abs]
  42. Chagnon, P-L; U'Ren, JM; Miadlikowska, J; Lutzoni, F; Arnold, AE, Interaction type influences ecological network structure more than local abiotic conditions: evidence from endophytic and endolichenic fungi at a continental scale., Oecologia, vol. 180 no. 1 (January, 2016), pp. 181-191, ISSN 0029-8549 [doi]  [abs]
  43. Darnajoux, R; Lutzoni, F; Miadlikowska, J; Bellenger, J-P, Determination of elemental baseline using peltigeralean lichens from Northeastern Canada (Québec): Initial data collection for long term monitoring of the impact of global climate change on boreal and subarctic area in Canada., The Science of the total environment, vol. 533 (November, 2015), pp. 1-7, ISSN 0048-9697 [doi]  [abs]
  44. Oono, R; Lefèvre, E; Simha, A; Lutzoni, F, A comparison of the community diversity of foliar fungal endophytes between seedling and adult loblolly pines (Pinus taeda)., Fungal biology, vol. 119 no. 10 (October, 2015), pp. 917-928, ISSN 1878-6146 [doi]  [abs]
  45. Gaya, E; Fernández-Brime, S; Vargas, R; Lachlan, RF; Gueidan, C; Ramírez-Mejía, M; Lutzoni, F, The adaptive radiation of lichen-forming Teloschistaceae is associated with sunscreening pigments and a bark-to-rock substrate shift., Proceedings of the National Academy of Sciences of the United States of America, vol. 112 no. 37 (September, 2015), pp. 11600-11605, ISSN 0027-8424 [doi]  [abs]
  46. Chen, K-H; Miadlikowska, J; Molnár, K; Arnold, AE; U'Ren, JM; Gaya, E; Gueidan, C; Lutzoni, F, Phylogenetic analyses of eurotiomycetous endophytes reveal their close affinities to Chaetothyriales, Eurotiales, and a new order - Phaeomoniellales., Molecular phylogenetics and evolution, vol. 85 (April, 2015), pp. 117-130, ISSN 1055-7903 [doi]  [abs]
  47. Gueidan, C; Hill, DJ; Miadlikowska, J; Lutzoni, F, Pezizomycotina: Lecanoromycetes, in Volume VII of The Mycota Part B, edited by D. J. McLaughlin and J. W. Spatafora (January, 2015), pp. 89-120, Springer Berlin Heidelberg, Berlin, Germany [doi]  [abs]
  48. Miadlikowska, J; Kauff, F; Högnabba, F; Oliver, JC; Molnár, K; Fraker, E; Gaya, E; Hafellner, J; Hofstetter, V; Gueidan, C; Otálora, MAG; Hodkinson, B; Kukwa, M; Lücking, R; Björk, C; Sipman, HJM; Burgaz, AR; Thell, A; Passo, A; Myllys, L; Goward, T; Fernández-Brime, S; Hestmark, G; Lendemer, J; Lumbsch, HT; Schmull, M; Schoch, CL; Sérusiaux, E; Maddison, DR; Arnold, AE; Lutzoni, F; Stenroos, S, A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families., Molecular phylogenetics and evolution, vol. 79 (October, 2014), pp. 132-168, ISSN 1055-7903 [doi]  [abs]
  49. Oono, R; Lutzoni, F; Arnold, AE; Kaye, L; U'Ren, JM; May, G; Carbone, I, Genetic variation in horizontally transmitted fungal endophytes of pine needles reveals population structure in cryptic species., American journal of botany, vol. 101 no. 8 (August, 2014), pp. 1362-1374, ISSN 0002-9122 [doi]  [abs]
  50. Miadlikowska, J; Richardson, D; Magain, N; Ball, B; Anderson, F; Cameron, R; Lendemer, J; Truong, C; Lutzoni, F, Phylogenetic placement, species delimitation, and cyanobiont identity of endangered aquatic Peltigera species (lichen-forming Ascomycota, Lecanoromycetes)., American journal of botany, vol. 101 no. 7 (July, 2014), pp. 1141-1156, ISSN 0002-9122 [doi]  [abs]
  51. Darnajoux, R; Constantin, J; Miadlikowska, J; Lutzoni, F; Bellenger, J-P, Is vanadium a biometal for boreal cyanolichens?, The New phytologist, vol. 202 no. 3 (May, 2014), pp. 765-771, ISSN 0028-646X [doi]  [abs]
  52. McDonald, TR; Mueller, O; Dietrich, FS; Lutzoni, F, High-throughput genome sequencing of lichenizing fungi to assess gene loss in the ammonium transporter/ammonia permease gene family., BMC Genomics, vol. 14 (April, 2013), pp. 225 [doi]  [abs]
  53. O'Brien, HE; Miadlikowska, J; Lutzoni, F, Assessing population structure and host specialization in lichenized cyanobacteria., The New phytologist, vol. 198 no. 2 (April, 2013), pp. 557-566 [23406441], [doi]  [abs]
  54. Hodkinson, BP; Allen, JL; Forrest, L; Goffinet, B; Sérusiaux, E; Andrésson, ÓS; Miao, V; Bellenger, JP; Lutzoni, F, Lichen-symbiotic Cyanobacteria have an alternative vanadium-dependent nitrogen fixation system, New Phytologist, vol. 49 no. 1 (2013), pp. 11-19, Informa UK Limited [doi]  [abs]
  55. McDonald, TR; Gaya, E; Lutzoni, F, Twenty-five aposymbiotic cultures of lichenizing fungi available for experimental studies on symbiotic systems, Symbiosis, vol. 59 no. 3 (2013), pp. 165-171, Springer Nature, ISSN 0334-5114 [doi]  [abs]
  56. Fernández Brime, S; Llimona, X; Lutzoni, F; Gaya, E, Phylogenetic study of Diploschistes (Graphidaceae, Ostropales, lichen-forming Ascomycota), based on morphological, chemical and molecular data, Taxon, vol. 62 no. 2 (2013), pp. 267-280, ISSN 0040-0262 [doi]  [abs]
  57. Gazis, R; Miadlikowska, J; Lutzoni, F; Arnold, AE; Chaverri, P, Culture-based study of endophytes associated with rubber trees in Peru reveals a new class of Pezizomycotina: Xylonomycetes., Molecular phylogenetics and evolution, vol. 65 no. 1 (October, 2012), pp. 294-304, ISSN 1055-7903 [doi]  [abs]
  58. Liwa, L; Miadlikowska, J; Redelings, BD; Molnar, K; Lutzoni, F, Are widespread morphospecies from the Lecanora dispersa group (lichen-forming Ascomycota) monophyletic?, Bryologist, vol. 115 no. 2 (June, 2012), pp. 265-277, American Bryological and Lichenological Society, ISSN 0007-2745 [doi]  [abs]
  59. U'Ren, JM; Lutzoni, F; Miadlikowska, J; Laetsch, AD; Arnold, AE, Host and geographic structure of endophytic and endolichenic fungi at a continental scale., American journal of botany, vol. 99 no. 5 (May, 2012), pp. 898-914, ISSN 0002-9122 [doi]  [abs]
  60. Gaya, E; Högnabba, F; Holguin, A; Molnar, K; Fernández-Brime, S; Stenroos, S; Arup, U; Søchting, U; Van den Boom, P; Lücking, R; Sipman, HJM; Lutzoni, F, Implementing a cumulative supermatrix approach for a comprehensive phylogenetic study of the Teloschistales (Pezizomycotina, Ascomycota)., Molecular phylogenetics and evolution, vol. 63 no. 2 (May, 2012), pp. 374-387 [22306043], [doi]  [abs]
  61. Geml, J; Kauff, F; Brochmann, C; Lutzoni, F; Laursen, GA; Redhead, SA; Taylor, DL, Frequent circumarctic and rare transequatorial dispersals in the lichenised agaric genus Lichenomphalia (Hygrophoraceae, Basidiomycota)., Fungal biology, vol. 116 no. 3 (March, 2012), pp. 388-400, ISSN 1878-6146 [doi]  [abs]
  62. McDonald, TR; Dietrich, FS; Lutzoni, F, Multiple horizontal gene transfers of ammonium transporters/ammonia permeases from prokaryotes to eukaryotes: toward a new functional and evolutionary classification., Mol Biol Evol, vol. 29 no. 1 (January, 2012), pp. 51-60 [21680869], [doi]  [abs]
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  120. Paoletti, M; Rydholm, C; Schwier, E; Anderson, MJ; Szakacs, G; Lutzoni, F; Debeaupuis, JP; Latgé, JP; Denning, DW; Dyer, PS, Evidence for sexuality in the opportunistic fungal pathogen Aspergillus fumigatus., Current Biology, vol. 15 no. 13 (2005), pp. 1242-1248 [doi]  [abs]
  121. Lutzoni, F; Kauff, F; Cox, CJ; McLaughlin, D; Celio, G; Dentinger, B; Padamsee, M; Hibbett, D; James, TY; Baloch, E; Grube, M; Reeb, V; Hofstetter, V; Schoch, C; Arnold, AE; Miadlikowska, J; Spatafora, J; Johnson, D; Hambleton, S; Crockett, M; Shoemaker, R; Sung, G-H; Lücking, R; Lumbsch, T; O'Donnell, K; Binder, M; Diederich, P; Ertz, D; Gueidan, C; Hansen, K; Harris, RC; Hosaka, K; Lim, Y-W; Matheny, B; Nishida, H; Pfister, D; Rogers, J; Rossman, A; Schmitt, I; Sipman, H; Stone, J; Sugiyama, J; Yahr, R; Vilgalys, R, Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits., American journal of botany, vol. 91 no. 10 (October, 2004), pp. 1446-1480, ISSN 0002-9122 [21652303], [doi]  [abs]
  122. Reeb, V; Lutzoni, F; Roux, C, Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory., Molecular phylogenetics and evolution, vol. 32 no. 3 (September, 2004), pp. 1036-1060, ISSN 1055-7903 [15288074], [doi]  [abs]
  123. Miadlikowska, J; Lutzoni, F, Phylogenetic classification of peltigeralean fungi (Peltigerales, Ascomycota) based on ribosomal RNA small and large subunits., American journal of botany, vol. 91 no. 3 (March, 2004), pp. 449-464, ISSN 0002-9122 [21653401], [doi]  [abs]
  124. Haugen, P; Reeb, V; Lutzoni, F; Bhattacharya, D, The evolution of homing endonuclease genes and group I introns in nuclear rDNA., Molecular biology and evolution, vol. 21 no. 1 (January, 2004), pp. 129-140 [doi]  [abs]
  125. Haugen, P; Reeb, V; Lutzoni, F; Bhattacharya, D, The evolution of homing endonuclease genes and group I introns in nuclear rDNA., Molecular Biology and Evolution, vol. 21 no. 1 (2004), pp. 105-116 [doi]  [abs]
  126. Zoller, S; Lutzoni, F, Slow algae, fast fungi: exceptionally high nucleotide substitution rate differences between lichenized fungi Omphalina and their symbiotic green algae Coccomyxa., Molecular phylogenetics and evolution, vol. 29 no. 3 (December, 2003), pp. 629-640, ISSN 1055-7903 [14615198], [doi]  [abs]
  127. Miadlikowska, J; Lutzoni, F; Goward, T; Zoller, S; Posada, D, New approach to an old problem: Incorporating signal from gap-rich regions of ITS and rDNA large subunit into phylogenetic analyses to resolve the Peltigera canina species complex., Mycologia, vol. 95 no. 6 (November, 2003), pp. 1181-1203, ISSN 0027-5514 [21149020], [doi]  [abs]
  128. Søchting, U; Lutzoni, F, Molecular phylogenetic study at the generic boundary between the lichen-forming fungi Caloplaca and Xanthoria (Ascomycota, Teloschistaceae)., Mycological research., vol. 107 no. Pt 11 (November, 2003), pp. 1266-1276 [doi]  [abs]
  129. Gaya, E; Lutzoni, F; Zoller, S; Navarro-Rosinés, P, Phylogenetic study of Fulgensia and allied Caloplaca and Xanthoria species (Teloschistaceae, lichen-forming ascomycota)., American journal of botany, vol. 90 no. 7 (July, 2003), pp. 1095-1103 [doi]  [abs]
  130. Alfaro, ME; Zoller, S; Lutzoni, F, Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence., Molecular biology and evolution, vol. 20 no. 2 (February, 2003), pp. 255-266 [doi]  [abs]
  131. McDonald, T; Miadlikowska, J; Lutzoni, F, The lichen genus Sticta in the Great Smoky Mountains: A phylogenetic study of morphological, chemical, and molecular data, Bryologist, vol. 106 no. 1 (January, 2003), pp. 61-79, American Bryological and Lichenological Society [doi]  [abs]
  132. Kauff, F; Lutzoni, F, Phylogeny of the Gyalectales and Ostropales (Ascomycota, Fungi): among and within order relationships based on nuclear ribosomal RNA small and large subunits., Molecular phylogenetics and evolution, vol. 25 no. 1 (October, 2002), pp. 138-156, ISSN 1055-7903 [doi]  [abs]
  133. Barker, FK; Lutzoni, FM, The utility of the incongruence length difference test., Systematic biology, vol. 51 no. 4 (August, 2002), pp. 625-637 [doi]
  134. Redhead, SA; Lutzoni, F; Moncalvo, JM; Vilgalys, R, Phylogeny of agarics: partial systematics solutions for core omphalinoid genera in the agaricales (Euagarics)., Mycotaxon., vol. 83 (July, 2002), pp. 19-57  [abs]
  135. Redhead, SA; Moncalvo, JM; Vilgalys, R; Lutzoni, F, Phylogeny of agarics: partial systematics solutions for bryophilous omphalinoid agarics outside of the Agaricales (Euagarics)., Mycotaxon., vol. 82 (June, 2002), pp. 151-168, ISSN 0093-4666 [Gateway.cgi]  [abs]
  136. O'Donnell, K; Lutzoni, FM; Ward, TJ; Benny, GL, Erratum: Evolutionary relationships among mucoralean fungi (zygomycota): Evidence for family polyphyly on a large scale (Mycologia (2001) 93:2), Mycologia, vol. 93 no. 4 (January, 2002), pp. 814, ISSN 0027-5514 [doi]
  137. Miadlikowska, J; McCune, B; Lutzoni, F, Pseudocyphellaria perpetua, a new lichen from western North America, Bryologist, vol. 105 no. 1 (January, 2002), pp. 1-10, American Bryological and Lichenological Society [doi]  [abs]
  138. Lutzoni, F; Pagel, M; Reeb, V, Major fungal lineages are derived from lichen symbiotic ancestors., Nature, vol. 411 no. 6840 (June, 2001), pp. 937-940, ISSN 0028-0836 [doi]  [abs]
  139. O'Donnell, K; Lutzoni, FM; Ward, TJ; Benny, GL, Evolutionary relationships among mucoralean fungi (Zygomycota): Evidence for family polyphyly on a large scale, Mycologia, vol. 93 no. 2 (January, 2001), pp. 286-296, JSTOR, ISSN 0027-5514 [doi]  [abs]
  140. Alfaro, ME; Zoller, S; Lutzoni, F, Comparative performance of the bootstrap and Bayesian MCMC sampling in assessing phylogenetic confidence: a simulation study, AMERICAN ZOOLOGIST, vol. 41 no. 6 (2001), pp. 1379-1379, ISSN 0003-1569 [Gateway.cgi]
  141. Bhattacharya, D; Lutzoni, F; Reeb, V; Simon, D; Nason, J; Fernandez, F, Widespread occurrence of spliceosomal introns in the rDNA genes of ascomycetes., Molecular biology and evolution, vol. 17 no. 12 (December, 2000), pp. 1971-1984, ISSN 0737-4038 [doi]  [abs]
  142. Lutzoni, F; Wagner, P; Reeb, V; Zoller, S, Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology., Systematic biology, vol. 49 no. 4 (December, 2000), pp. 628-651 [doi]  [abs]
  143. Wu, QX; Mueller, GM; Lutzoni, FM; Huang, YQ; Guo, SY, Phylogenetic and biogeographic relationships of eastern Asian and eastern North American disjunct Suillus species (fungi) as inferred from nuclear ribosomal RNA ITS sequences., Molecular phylogenetics and evolution, vol. 17 no. 1 (October, 2000), pp. 37-47, ISSN 1055-7903 [doi]  [abs]
  144. Moncalvo, JM; Lutzoni, FM; Rehner, SA; Johnson, J; Vilgalys, R, Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA sequences., Systematic biology, vol. 49 no. 2 (June, 2000), pp. 278-305, ISSN 1063-5157 [12118409], [doi]  [abs]
  145. Miadlikowska, J; Lutzoni, F, Phylogenetic revision of the genus Peltigera (lichen-forming Ascomycota) based on morphological, chemical, and large subunit nuclear ribosomal DNA data, International Journal of Plant Sciences, vol. 161 no. 6 (January, 2000), pp. 925-958, University of Chicago Press [doi]  [abs]
  146. Zoller, S; Lutzoni, F; Scheidegger, C, Genetic variation within and among populations of the threatened lichen Lobaria pulmonaria in Switzerland and implications for its conservation., Molecular ecology, vol. 8 no. 12 (December, 1999), pp. 2049-2059, ISSN 0962-1083 [doi]  [abs]
  147. Lutzoni, F; Barker, FK, Sampling confidence envelopes of phylogenetic trees for combinability testing: a reply to Rodrigo., Systematic biology, vol. 48 no. 3 (September, 1999), pp. 596-603 [doi]
  148. Fernández, FA; Lutzoni, FM; Huhndorf, SM, Teleomorph-anamorph connections: The new pyrenomycetous genus Carpoligna and its Pleurothecium anamorph, Mycologia, vol. 91 no. 2 (January, 1999), pp. 251-262, JSTOR [doi]  [abs]
  149. Zoller, S; Lutzoni, F; Scheidegger, C, Genetic variability within and among populations of the threatened foliose lichen Lobaria pulmonaria (L.), Molecular Ecology, vol. 8 (1999), pp. 2049-2060, Hoffm. in Switzerland.
  150. Lutzoni, F; Pagel, M, Accelerated evolution as a consequence of transitions to mutualism., Proceedings of the National Academy of Sciences of the United States of America, vol. 94 no. 21 (October, 1997), pp. 11422-11427, ISSN 0027-8424 [11038586], [doi]  [abs]
  151. Lutzoni, FM, Phylogeny of lichen- and non-lichen-forming omphalinoid mushrooms and the utility of testing for combinability among multiple data sets., Systematic biology, vol. 46 no. 3 (September, 1997), pp. 373-406, ISSN 1063-5157 (journal cover.) [11975328], [doi]  [abs]
  152. Lutzoni, FM; Brodo, IM, A generic redelimitation of the Ionaspis-Hymenelia complex (lichenized ascomycotina), Systematic Botany, vol. 20 no. 3 (January, 1995), pp. 224-258, JSTOR [doi]
  153. Lutzoni, F; Vilgalys, R, ntegration of morphological and molecular datasets in estimating fungal phylogenies, Canadian Journal of Botany, vol. 73(Suppl. 1) (1995), pp. S649-S659
  154. Lutzoni, F; Vilgalys, R, Omphalina (Basidiomycota, Agaricales) as a model system for the study of coevolution in lichenized fungi, Special Issue of Cryptogamic Botany, vol. 5 (1995), pp. 82-97
  155. Lutzoni, FM; Brodo, IM, Proposal to conserve the name Gyalecta suaveolens Fr. (lichenized Ascomycota) with a conserved type, Taxon, vol. 43 no. 4 (January, 1994), pp. 657-659 [doi]
  156. Lutzoni, FM, Ionaspis alba (Ascomycotina, Hymeneliaceae), a new lichen species from eastern North America, Bryologist, vol. 97 no. 4 (January, 1994), pp. 393-395, JSTOR [doi]
  157. Grandtner, MM; Lutzoni, F, References on the vegetation of Québec, Excerpta Botanica Sec. B. Bd, vol. 29 no. 1 (1991), pp. 1-24
  158. Sirois, L; Lutzoni, F; Grandtner, MM, Lichens on serpentine and amphibolite on the plateau of Mt. Albert, Gaspesie, Quebec, Canadian Journal of Botany, vol. 66 no. 5 (January, 1988), pp. 851-862, Canadian Science Publishing [doi]  [abs]
  159. Sirois, L; Lutzoni, F; Grandtner, MM, Les lichens sur serpentine et amphibolite du plateau du mont Albert, Gaspésie, Québec, Canadian Journal of Botany, vol. 66 no. 5 (1988), pp. 851-862  [abs]

Papers Submitted

  1. Oono, R., Lutzoni, F., Arnold, A. E., Kaye, L., U’ren, J. M., May, G., Carbone, I., Genetic variation in horizontally transmitted symbionts of pine needles reveals population structure in cryptic species, American Naturalist (2014)
  2. Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., Gaya, E., Hafellner, J., Hofstetter, V., Gueidan, C., Kukwa, M., Lücking, M., Björk, C., Sipman, H. J. M., Burgaz, A. R., Thell, A., Passo, A., Myllys, L., Goward, T., Fernández-Brime, S., Hestmark, G., Lendemer, J., Lumbsch, H. T., Schmull, M., Schoch, C., Sérusiaux, E., Maddison, D. R., Arnold, A. E., Stenroos, S. and Lutzoni, F., Multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 312 genera and 66 families, Molecular Phylogenetics and Evolution (2014)

Book Chapters

  1. Magain, N; Miadlikowska, J; Goffinet, B; Sérusiaux, E; Lutzoni, F, Macroevolution of Specificity in Cyanolichens of the Genus Peltigera Section Polydactylon (Lecanoromycetes, Ascomycota)., Systematic biology, vol. 66 no. 1 (January, 2017), pp. 74-99 [doi]  [abs]
  2. Lutzoni, F; Vilgalys, R, Integration of morphological and molecular data sets in estimating fungal phytogenies, Canadian Journal of Botany, vol. 73 no. S1 (December, 1995), pp. 649-659, Canadian Science Publishing, ISSN 0008-4026 [Gateway.cgi], [doi]  [abs]

Book Reviews

  1. Lutzoni, F. [Review] Stefan Ekman in Opera Botanica 127, 148 pp., 1996., The corticolous and lignicolous species of Bacidia and Bacidina in North America, The Bryologist, vol. 102 (1999), pp. 165-166
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