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Publications of Jolanta M. Miadlikowska    :chronological  alphabetical  combined  bibtex listing:

Papers Published

  1. Magain, N; Truong, C; Goward, T; Niu, D; Goffinet, B; Sérusiaux, E; Vitikainen, O; Lutzoni, F; Miadlikowska, J, Species delimitation at a global scale reveals high species richness with complex biogeography and patterns of symbiont association in peltigera section peltigera (Lichenized ascomycota: Lecanoromycetes), Taxon, vol. 67 no. 5 (October, 2018), pp. 836-870 [doi]  [abs]
  2. Lu, J; Magain, N; Miadlikowska, J; Coyle, JR; Truong, C; Lutzoni, F, Bioclimatic factors at an intrabiome scale are more limiting than cyanobiont availability for the lichen-forming genus Peltigera., American Journal of Botany, vol. 105 no. 7 (July, 2018), pp. 1198-1211 [doi]  [abs]
  3. Chagnon, PL; Magain, N; Miadlikowska, J; Lutzoni, F, Strong specificity and network modularity at a very fine phylogenetic scale in the lichen genus Peltigera, Oecologia, vol. 187 no. 3 (July, 2018), pp. 767-782 [doi]
  4. Magain, N; Miadlikowska, J; Mueller, O; Gajdeczka, M; Truong, C; Salamov, AA; Dubchak, I; Grigoriev, IV; Goffinet, B; Sérusiaux, E; Lutzoni, F, Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon., Molecular Phylogenetics and Evolution, vol. 117 (December, 2017), pp. 10-29 [doi]  [abs]
  5. Heiđmarsson, S; Gueidan, C; Miadlikowska, J; Lutzoni, F, Multi-locus phylogeny supports the placement of endocarpon pulvinatum within staurothele s. Str. (lichenised ascomycetes, eurotiomycetes, verrucariaceae), Phytotaxa, vol. 306 no. 1 (May, 2017), pp. 37-48 [available here], [doi]  [abs]
  6. Carbone, I; White, JB; Miadlikowska, J; Arnold, AE; Miller, MA; Kauff, F; U'Ren, JM; May, G; Lutzoni, F, T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life., Bioinformatics (Oxford, England), vol. 33 no. 8 (April, 2017), pp. 1160-1168 [available here], [doi]  [abs]
  7. Magain, N; Miadlikowska, J; Goffinet, B; Sérusiaux, E; Lutzoni, F, Macroevolution of Specificity in Cyanolichens of the Genus Peltigera Section Polydactylon (Lecanoromycetes, Ascomycota)., Systematic Biology, vol. 66 no. 1 (January, 2017), pp. 74-99 [available here], [doi]  [abs]
  8. Darnajoux, R; Zhang, X; McRose, DL; Miadlikowska, J; Lutzoni, F; Kraepiel, AML; Bellenger, J-P, Biological nitrogen fixation by alternative nitrogenases in boreal cyanolichens: importance of molybdenum availability and implications for current biological nitrogen fixation estimates., The New Phytologist, vol. 213 no. 2 (January, 2017), pp. 680-689 [available here], [doi]  [abs]
  9. Gryganskyi, A. P., Humber, R. A., Miadlikowska, J., Smith, M., Wu, S., Rubinstein, N., Voigt, K., Walter, G., Anihchenko, I. M., Vilgalys, R., Molecular Phylogeny of Entomophthoralean Fungi., Molecular Phylogenetics and Evolution, vol. 65 (2017), pp. 682-694 [available here]
  10. Miadlikowska, J. and Lutzoni, F., Phylogenetic classification of peltigeralean fungi (Peltigerales, Ascomycota) based on ribosomal RNA small and large subunits., American Journal of Botany, vol. 91 (2017), pp. 449–464 [available here]
  11. MANOHARAN-BASIL, SS; MIADLIKOWSKA, J; GOWARD, T; ANDRÉSSON, ÓS; MIAO, VPW, Peltigera islandica, a new cyanolichen species in section Peltigera (‘P. canina group’), Lichenologist, vol. 48 no. 05 (2016), pp. 451-467 [available here], [doi]
  12. HESTMARK, G; LUTZONI, F; MIADLIKOWSKA, J, Photobiont associations in co-occurring umbilicate lichens with contrasting modes of reproduction in coastal Norway, Lichenologist, vol. 48 no. 05 (2016), pp. 545-557 [available here], [doi]
  13. van Nieuwenhuijzen, EJ; Miadlikowska, JM; Houbraken, JAMP; Adan, OCG; Lutzoni, FM; Samson, RA, Wood staining fungi revealed taxonomic novelties in Pezizomycotina: New order Superstratomycetales and new species Cyanodermella oleoligni, Studies in Mycology, vol. 85 (2016), pp. 107-124 [available here], [doi]
  14. Chagnon, P-L; U’Ren, JM; Miadlikowska, J; Lutzoni, F; Arnold, AE, Erratum to: Interaction type influences ecological network structure more than local abiotic conditions: evidence from endophytic and endolichenic fungi at a continental scale, Oecologia, vol. 181 no. 2 (June, 2016), pp. 633-633 [doi]
  15. U'Ren, JM; Miadlikowska, J; Zimmerman, NB; Lutzoni, F; Stajich, JE; Arnold, AE, Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota)., Molecular Phylogenetics and Evolution, vol. 98 (2016), pp. 210-232 [available here], [doi]  [abs]
  16. Chagnon, P-L; U'Ren, JM; Miadlikowska, J; Lutzoni, F; Arnold, AE, Interaction type influences ecological network structure more than local abiotic conditions: evidence from endophytic and endolichenic fungi at a continental scale., Oecologia, vol. 180 no. 1 (2016), pp. 181-191 [available here], [doi]  [abs]
  17. Magain, N., Sérusiaux, E., Zhurbenko, M. P., Lutzoni, F., Miadlikowska, J., Disentangling the Peltigera polydactylon species complex by recognizing two new taxa, P. polydactylon subsp. udeghe and P. seneca., Herzogia, vol. 29 (2016), pp. 514-528 [available here]
  18. Divakar, PK; Crespo, A; Wedin, M; Leavitt, SD; Hawksworth, DL; Myllys, L; McCune, B; Randlane, T; Bjerke, JW; Ohmura, Y; Schmitt, I; Boluda, CG; Alors, D; Roca-Valiente, B; Del-Prado, R; Ruibal, C; Buaruang, K; Núñez-Zapata, J; Amo de Paz, G; Rico, VJ; Molina, MC; Elix, JA; Esslinger, TL; Tronstad, IKK; Lindgren, H; Ertz, D; Gueidan, C; Saag, L; Mark, K; Singh, G; Dal Grande, F; Parnmen, S; Beck, A; Benatti, MN; Blanchon, D; Candan, M; Clerc, P; Goward, T; Grube, M; Hodkinson, BP; Hur, J-S; Kantvilas, G; Kirika, PM; Lendemer, J; Mattsson, J-E; Messuti, MI; Miadlikowska, J; Nelsen, M; Ohlson, JI; Pérez-Ortega, S; Saag, A; Sipman, HJM; Sohrabi, M; Thell, A; Thor, G; Truong, C; Yahr, R; Upreti, DK; Cubas, P; Lumbsch, HT, Evolution of complex symbiotic relationships in a morphologically derived family of lichen-forming fungi., The New Phytologist, vol. 208 no. 4 (2015), pp. 1217-1226 [available here], [doi]  [abs]
  19. Darnajoux, R; Lutzoni, F; Miadlikowska, J; Bellenger, J-P, Determination of elemental baseline using peltigeralean lichens from Northeastern Canada (Québec): Initial data collection for long term monitoring of the impact of global climate change on boreal and subarctic area in Canada., The Science of the Total Environment, vol. 533 (2015), pp. 1-7 [available here], [doi]  [abs]
  20. Chen, K-H; Miadlikowska, J; Molnár, K; Arnold, AE; U'Ren, JM; Gaya, E; Gueidan, C; Lutzoni, F, Phylogenetic analyses of eurotiomycetous endophytes reveal their close affinities to Chaetothyriales, Eurotiales, and a new order - Phaeomoniellales., Molecular Phylogenetics and Evolution, vol. 85 (2015), pp. 117-130 [available here], [doi]  [abs]
  21. Gueidan, C; Hill, DJ; Miadlikowska, J; Lutzoni, F, Pezizomycotina: Lecanoromycetes (January, 2015), pp. 89-120 [doi]  [abs]
  22. Gueidan, C., Hill, D. J., Miadlikowska, J., Lutzoni, F., Chapter 4. Pezizomycotina:  Lecanoromycetes., in The Mycota, Systematics and Evolution , edited by D. J. McLaughlin and J. W. Spatafora, vol. VIIB (2015), pp. 89–120 , Springer Verlag,, Berlin, Germany
  23. Miadlikowska, J; Kauff, F; Högnabba, F; Oliver, JC; Molnár, K; Fraker, E; Gaya, E; Hafellner, J; Hofstetter, V; Gueidan, C; Otálora, MAG; Hodkinson, B; Kukwa, M; Lücking, R; Björk, C; Sipman, HJM; Burgaz, AR; Thell, A; Passo, A; Myllys, L; Goward, T; Fernández-Brime, S; Hestmark, G; Lendemer, J; Lumbsch, HT; Schmull, M; Schoch, CL; Sérusiaux, E; Maddison, DR; Arnold, AE; Lutzoni, F; Stenroos, S, A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families., Molecular Phylogenetics and Evolution, vol. 79 (October, 2014), pp. 132-168 [doi]  [abs]
  24. U'Ren, JM; Riddle, JM; Monacell, JT; Carbone, I; Miadlikowska, J; Arnold, AE, Tissue storage and primer selection influence pyrosequencing-based inferences of diversity and community composition of endolichenic and endophytic fungi., Molecular Ecology Resources, vol. 14 no. 5 (2014), pp. 1032-1048 [available here], [doi]  [abs]
  25. Miadlikowska, J; Richardson, D; Magain, N; Ball, B; Anderson, F; Cameron, R; Lendemer, J; Truong, C; Lutzoni, F, Phylogenetic placement, species delimitation, and cyanobiont identity of endangered aquatic Peltigera species (lichen-forming Ascomycota, Lecanoromycetes)., American Journal of Botany, vol. 101 no. 7 (2014), pp. 1141-1156 [available here], [doi]  [abs]
  26. Darnajoux, R; Constantin, J; Miadlikowska, J; Lutzoni, F; Bellenger, J-P, Is vanadium a biometal for boreal cyanolichens?, The New Phytologist, vol. 202 no. 3 (2014), pp. 765-771 [available here], [doi]  [abs]
  27. O'Brien, HE; Miadlikowska, J; Lutzoni, F, Assessing population structure and host specialization in lichenized cyanobacteria., The New Phytologist, vol. 198 no. 2 (2013), pp. 557-566 [available here], [doi]  [abs]
  28. Gazis, R; Miadlikowska, J; Lutzoni, F; Arnold, AE; Chaverri, P, Culture-based study of endophytes associated with rubber trees in Peru reveals a new class of Pezizomycotina: Xylonomycetes., Molecular Phylogenetics and Evolution, vol. 65 no. 1 (2012), pp. 294-304 [available here], [doi]  [abs]
  29. Śliwa, L; Miadlikowska, J; Redelings, BD; Molnar, K; Lutzoni, F, Are widespread morphospecies from the Lecanora dispersa group (lichen-forming Ascomycota) monophyletic?, The Bryologist, vol. 115 no. 2 (June, 2012), pp. 265-277 [doi]  [abs]
  30. U'Ren, JM; Lutzoni, F; Miadlikowska, J; Laetsch, AD; Arnold, AE, Host and geographic structure of endophytic and endolichenic fungi at a continental scale., American Journal of Botany, vol. 99 no. 5 (2012), pp. 898-914 [available here], [doi]  [abs]
  31. McCune, B; Schoch, C; Root, HT; Kageyama, SA; Miadlikowska, J, Geographic, climatic, and chemical differentiation in the Hypogymnia imshaugii species complex (Lecanoromycetes, Parmeliaceae) in North America, The Bryologist, vol. 114 no. 3 (2011), pp. 526-544 [available here], [doi]
  32. Schmull, M; Miadlikowska, J; Pelzer, M; Stocker-Wörgötter, E; Hofstetter, V; Fraker, E; Hodkinson, BP; Reeb, V; Kukwa, M; Lumbsch, HT; Kauff, F; Lutzoni, F, Phylogenetic affiliations of members of the heterogeneous lichen-forming fungi of the genus Lecidea sensu Zahlbruckner (Lecanoromycetes, Ascomycota)., Mycologia, vol. 103 no. 5 (2011), pp. 983-1003 [available here], [doi]  [abs]
  33. Miadlikowska, J; Schoch, CL; Kageyama, SA; Molnar, K; Lutzoni, F; McCune, B, Hypogymnia phylogeny, including Cavernularia, reveals biogeographic structure, The Bryologist, vol. 114 no. 2 (2011), pp. 392-400 [available here], [doi]  [abs]
  34. Hestmark, G; Miadlikowska, J; Kauff, F; Fraker, E; Molnar, K; Lutzoni, F, Single origin and subsequent diversification of central Andean endemic Umbilicaria species., Mycologia, vol. 103 no. 1 (2011), pp. 45-56 [available here], [doi]  [abs]
  35. Sliwa, L., Miadlikowska, J., Redelings, B. D., Molnar, K., Lutzoni, F., Are morphospecies from the Lecanora dispersa group (lichenized Lecanoromycetes, Pezizomycotina) monophyletic?, The Bryologist, vol. 115 (2011), pp. 265–277 [available here]
  36. Crespo, A; Kauff, F; Divakar, PK; del Prado, R; Pérez-Ortega, S; de Paz, GA; Ferencova, Z; Blanco, O; Roca-Valiente, B; Núñez-Zapata, J; Cubas, P; Argüello, A; Elix, JA; Esslinger, TL; Hawksworth, DL; Millanes, A; Molina, MC; Wedin, M; Ahti, T; Aptroot, A; Barreno, E; Bungartz, F; Calvelo, S; Candan, M; Cole, M; Ertz, D; Goffinet, B; Lindblom, L; Lücking, R; Lutzoni, F; Mattsson, JE; Messuti, MI; Miadlikowska, J; Piercey-Normore, M; Rico, VJ; Sipman, HJM; Schmitt, I; Spribille, T; Thell, A; Thor, G; Upreti, DK; Thorsten Lumbsch, H, Phylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence, Taxon, vol. 59 no. 6 (2010), pp. 1735-1753 [available here]  [abs]
  37. U'ren, JM; Lutzoni, F; Miadlikowska, J; Arnold, AE, Community analysis reveals close affinities between endophytic and endolichenic fungi in mosses and lichens., Microbial Ecology, vol. 60 no. 2 (2010), pp. 340-353 [available here], [doi]  [abs]
  38. O'Brien, HE; Miadlikowska, J; Lutzoni, F, Assessing reproductive isolation in highly diverse communities of the lichen-forming fungal genus peltigera., Evolution; International Journal of Organic Evolution, vol. 63 no. 8 (2009), pp. 2076-2086 [available here], [doi]  [abs]
  39. Lutzoni, F; Miadlikowska, J, Lichens., Current Biology : Cb, vol. 19 no. 13 (2009), pp. R502-R503 [available here], [doi]
  40. Arnold, AE; Miadlikowska, J; Higgins, KL; Sarvate, SD; Gugger, P; Way, A; Hofstetter, V; Kauff, F; Lutzoni, F, A phylogenetic estimation of trophic transition networks for ascomycetous fungi: are lichens cradles of symbiotrophic fungal diversification?, Systematic Biology, vol. 58 no. 3 (2009), pp. 283-297 [available here], [doi]  [abs]
  41. Schoch, CL; Sung, G-H; López-Giráldez, F; Townsend, JP; Miadlikowska, J; Hofstetter, V; Robbertse, B; Matheny, PB; Kauff, F; Wang, Z; Gueidan, C; Andrie, RM; Trippe, K; Ciufetti, LM; Wynns, A; Fraker, E; Hodkinson, BP; Bonito, G; Groenewald, JZ; Arzanlou, M; de Hoog, GS; Crous, PW; Hewitt, D; Pfister, DH; Peterson, K; Gryzenhout, M; Wingfield, MJ; Aptroot, A; Suh, S-O; Blackwell, M; Hillis, DM; Griffith, GW; Castlebury, LA; Rossman, AY; Lumbsch, HT; Lücking, R; Büdel, B; Rauhut, A; Diederich, P; Ertz, D; Geiser, DM; Hosaka, K; Inderbitzin, P; Kohlmeyer, J; Volkmann-Kohlmeyer, B; Mostert, L; O'Donnell, K; Sipman, H; Rogers, JD; Shoemaker, RA; Sugiyama, J; Summerbell, RC; Untereiner, W; Johnston, PR; Stenroos, S; Zuccaro, A; Dyer, PS; Crittenden, PD; Cole, MS; Hansen, K; Trappe, JM; Yahr, R; Lutzoni, F; Spatafora, JW, The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits., Systematic Biology, vol. 58 no. 2 (2009), pp. 224-239 [available here], [doi]  [abs]
  42. Ertz, D; Miadlikowska, J; Lutzoni, F; Dessein, S; Raspé, O; Vigneron, N; Hofstetter, V; Diederich, P, Towards a new classification of the Arthoniales (Ascomycota) based on a three-gene phylogeny focussing on the genus Opegrapha., Mycological Research, vol. 113 no. Pt 1 (2009), pp. 141-152 [available here], [doi]  [abs]
  43. Sérusiaux, E., Goffinet, B., Miadlikowska, J., Vitikainen, O., Taxonomy, phylogeny, and biogeography of the lichen genus Peltigera in Papua New Guinea, Fungal Diversity, vol. 38 (2009), pp. 185-224 [available here]
  44. Amtoft, A; Lutzoni, F; Miadlikowska, J, Dermatocarpon (Verrucariaceae) in the Ozark Highlands, North America, The Bryologist, vol. 111 no. 1 (2008), pp. 1-40 [available here], [doi]  [abs]
  45. Hofstetter, V; Miadlikowska, J; Kauff, F; Lutzoni, F, Phylogenetic comparison of protein-coding versus ribosomal RNA-coding sequence data: a case study of the Lecanoromycetes (Ascomycota)., Molecular Phylogenetics and Evolution, vol. 44 no. 1 (2007), pp. 412-426 [available here], [doi]  [abs]
  46. Hibbett, DS; Binder, M; Bischoff, JF; Blackwell, M; Cannon, PF; Eriksson, OE; Huhndorf, S; James, T; Kirk, PM; Lücking, R; Thorsten Lumbsch, H; Lutzoni, F; Matheny, PB; McLaughlin, DJ; Powell, MJ; Redhead, S; Schoch, CL; Spatafora, JW; Stalpers, JA; Vilgalys, R; Aime, MC; Aptroot, A; Bauer, R; Begerow, D; Benny, GL; Castlebury, LA; Crous, PW; Dai, Y-C; Gams, W; Geiser, DM; Griffith, GW; Gueidan, C; Hawksworth, DL; Hestmark, G; Hosaka, K; Humber, RA; Hyde, KD; Ironside, JE; Kõljalg, U; Kurtzman, CP; Larsson, K-H; Lichtwardt, R; Longcore, J; Miadlikowska, J; Miller, A; Moncalvo, J-M; Mozley-Standridge, S; Oberwinkler, F; Parmasto, E; Reeb, V; Rogers, JD; Roux, C; Ryvarden, L; Sampaio, JP; Schüssler, A; Sugiyama, J; Thorn, RG; Tibell, L; Untereiner, WA; Walker, C; Wang, Z; Weir, A; Weiss, M; White, MM; Winka, K; Yao, Y-J; Zhang, N, A higher-level phylogenetic classification of the Fungi., Mycological Research, vol. 111 no. Pt 5 (2007), pp. 509-547 [available here], [doi]  [abs]
  47. Higgins, KL; Arnold, AE; Miadlikowska, J; Sarvate, SD; Lutzoni, F, Phylogenetic relationships, host affinity, and geographic structure of boreal and arctic endophytes from three major plant lineages., Molecular Phylogenetics and Evolution, vol. 42 no. 2 (2007), pp. 543-555 [available here], [doi]  [abs]
  48. Geiser, DM; Gueidan, C; Miadlikowska, J; Lutzoni, F; Kauff, F; Hofstetter, V; Fraker, E; Schoch, CL; Tibell, L; Untereiner, WA; Aptroot, A, Eurotiomycetes: Eurotiomycetidae and Chaetothyriomycetidae., Mycologia, vol. 98 no. 6 (2006), pp. 1053-1064 [available here], [doi]  [abs]
  49. Spatafora, JW; Sung, G-H; Johnson, D; Hesse, C; O'Rourke, B; Serdani, M; Spotts, R; Lutzoni, F; Hofstetter, V; Miadlikowska, J; Reeb, V; Gueidan, C; Fraker, E; Lumbsch, T; Lücking, R; Schmitt, I; Hosaka, K; Aptroot, A; Roux, C; Miller, AN; Geiser, DM; Hafellner, J; Hestmark, G; Arnold, AE; Büdel, B; Rauhut, A; Hewitt, D; Untereiner, WA; Cole, MS; Scheidegger, C; Schultz, M; Sipman, H; Schoch, CL, A five-gene phylogeny of Pezizomycotina., Mycologia, vol. 98 no. 6 (2006), pp. 1018-1028 [available here], [doi]  [abs]
  50. Miadlikowska, J; Kauff, F; Hofstetter, V; Fraker, E; Grube, M; Hafellner, J; Reeb, V; Hodkinson, BP; Kukwa, M; Lücking, R; Hestmark, G; Otalora, MG; Rauhut, A; Büdel, B; Scheidegger, C; Timdal, E; Stenroos, S; Brodo, I; Perlmutter, GB; Ertz, D; Diederich, P; Lendemer, JC; May, P; Schoch, CL; Arnold, AE; Gueidan, C; Tripp, E; Yahr, R; Robertson, C; Lutzoni, F, New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA- and two protein-coding genes., Mycologia, vol. 98 no. 6 (November, 2006), pp. 1088-1103 [doi]  [abs]
  51. James, TY; Kauff, F; Schoch, CL; Matheny, PB; Hofstetter, V; Cox, CJ; Celio, G; Gueidan, C; Fraker, E; Miadlikowska, J; Lumbsch, HT; Rauhut, A; Reeb, V; Arnold, AE; Amtoft, A; Stajich, JE; Hosaka, K; Sung, G-H; Johnson, D; O'Rourke, B; Crockett, M; Binder, M; Curtis, JM; Slot, JC; Wang, Z; Wilson, AW; Schüssler, A; Longcore, JE; O'Donnell, K; Mozley-Standridge, S; Porter, D; Letcher, PM; Powell, MJ; Taylor, JW; White, MM; Griffith, GW; Davies, DR; Humber, RA; Morton, JB; Sugiyama, J; Rossman, AY; Rogers, JD; Pfister, DH; Hewitt, D; Hansen, K; Hambleton, S; Shoemaker, RA; Kohlmeyer, J; Volkmann-Kohlmeyer, B; Spotts, RA; Serdani, M; Crous, PW; Hughes, KW; Matsuura, K; Langer, E; Langer, G; Untereiner, WA; Lücking, R; Büdel, B; Geiser, DM; Aptroot, A; Diederich, P; Schmitt, I; Schultz, M; Yahr, R; Hibbett, DS; Lutzoni, F; McLaughlin, DJ; Spatafora, JW; Vilgalys, R, Reconstructing the early evolution of Fungi using a six-gene phylogeny., Nature, vol. 443 no. 7113 (2006), pp. 818-822 [available here], [doi]  [abs]
  52. O'Brien, HE; Miadlikowska, J; Lutzoni, F, Assessing host specialization in symbiotic cyanobacteria associated with four closely related species of the lichen fungus Peltigera, European Journal of Phycology, vol. 40 no. 4 (2005), pp. 363-378 [available here], [doi]  [abs]
  53. Lutzoni, F; Kauff, F; Cox, CJ; McLaughlin, D; Celio, G; Dentinger, B; Padamsee, M; Hibbett, D; James, TY; Baloch, E; Grube, M; Reeb, V; Hofstetter, V; Schoch, C; Arnold, AE; Miadlikowska, J; Spatafora, J; Johnson, D; Hambleton, S; Crockett, M; Shoemaker, R; Sung, G-H; Lücking, R; Lumbsch, T; O'Donnell, K; Binder, M; Diederich, P; Ertz, D; Gueidan, C; Hansen, K; Harris, RC; Hosaka, K; Lim, Y-W; Matheny, B; Nishida, H; Pfister, D; Rogers, J; Rossman, A; Schmitt, I; Sipman, H; Stone, J; Sugiyama, J; Yahr, R; Vilgalys, R, Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits., American Journal of Botany, vol. 91 no. 10 (2004), pp. 1446-1480 [available here], [doi]  [abs]
  54. Miadlikowska, J; Lutzoni, F, Phylogenetic classification of peltigeralean fungi (Peltigerales, Ascomycota) based on ribosomal RNA small and large subunits., American Journal of Botany, vol. 91 no. 3 (March, 2004), pp. 449-464 [doi]  [abs]
  55. ERTZ, D; DIEDERICH, P; MIADLIKOWSKA, J, The lichenicolous Opegrapha species (Roccellaceae, Ascomycota) with 3-septate ascospores on Pertusaria and Ochrolechia, Botanical Journal of the Linnean Society, vol. 144 no. 2 (2004), pp. 235-241 [available here], [doi]
  56. Miadlikowska, J; Lutzoni, F; Goward, T; Zoller, S; Posada, D, New approach to an old problem: Incorporating signal from gap-rich regions of ITS and rDNA large subunit into phylogenetic analyses to resolve the Peltigera canina species complex., Mycologia, vol. 95 no. 6 (2003), pp. 1181-1203 [available here], [doi]  [abs]
  57. Goffinet, B; Miadlikowska, J; Goward, T, Phylogenetic Inferences Based on nrDNA Sequences Support Five Morphospecies Within the Peltigera didactyla Complex (Lichenized Ascomycota), The Bryologist, vol. 106 no. 3 (September, 2003), pp. 349-364 [doi]
  58. Ertz, D; Zhurbenko, M; Diederich, P; Miadlikowska, J, A New Species of Plectocarpon (Lichenicolous Roccellaceae, Ascomycota) on Peltigera, The Bryologist, vol. 106 no. 3 (September, 2003), pp. 465-467 [doi]
  59. McDonald, T; Miadlikowska, J; Lutzoni, F, The Lichen Genus Sticta in the Great Smoky Mountains: A Phylogenetic Study of Morphological, Chemical, and Molecular Data, The Bryologist, vol. 106 no. 1 (2003), pp. 61-79 [available here], [doi]  [abs]
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