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Duke Herbarium : Publications since January 2023

List all publications in the database.    :chronological  alphabetical  combined  bibtex listing:

Aguero, Blanka

  1. Piatkowski, B; Weston, DJ; Aguero, B; Duffy, A; Imwattana, K; Healey, AL; Schmutz, J; Shaw, AJ, Divergent selection and climate adaptation fuel genomic differentiation between sister species of Sphagnum (peat moss)., Annals of botany, vol. 132 no. 3 (November, 2023), pp. 499-512 [doi]  [abs]

Lutzoni, Francois M.

  1. U'Ren, JM; Oita, S; Lutzoni, F; Miadlikowska, J; Ball, B; Carbone, I; May, G; Zimmerman, NB; Valle, D; Trouet, V; Arnold, AE, Environmental drivers and cryptic biodiversity hotspots define endophytes in Earth's largest terrestrial biome., Current biology : CB, vol. 34 no. 5 (March, 2024), pp. 1148-1156.e7 [doi]  [abs]
  2. Magain, N; Miadlikowska, J; Goffinet, B; Goward, T; Pardo-De la Hoz, CJ; Jüriado, I; Simon, A; Mercado-Díaz, JA; Barlow, T; Moncada, B; Lücking, R; Spielmann, A; Canez, L; Wang, LS; Nelson, P; Wheeler, T; Lutzoni, F; Sérusiaux, E, High species richness in the lichen genus Peltigera (Ascomycota, Lecanoromycetes): 34 species in the dolichorhizoid and scabrosoid clades of section Polydactylon, including 24 new to science, Persoonia: Molecular Phylogeny and Evolution of Fungi, vol. 51 (December, 2023), pp. 1-88 [doi]  [abs]
  3. Miadlikowska, J; Magain, N; Medeiros, ID; Pardo-De La Hoz, CJ; Carbone, I; Lagreca, S; Barlow, T; Myllys, L; Schmull, M; Lutzoni, F, Towards a nomenclatural clarification of the Peltigera ponojensis/monticola clade including metagenomic sequencing of type material and the introduction of P. globulata Miadl. & Magain sp. nov., Lichenologist, vol. 55 no. 5 (September, 2023), pp. 315-324 [doi]  [abs]
  4. Pardo-De la Hoz, CJ; Magain, N; Piatkowski, B; Cornet, L; Dal Forno, M; Carbone, I; Miadlikowska, J; Lutzoni, F, Ancient Rapid Radiation Explains Most Conflicts Among Gene Trees and Well-Supported Phylogenomic Trees of Nostocalean Cyanobacteria., Systematic biology, vol. 72 no. 3 (June, 2023), pp. 694-712 [doi]  [abs]

Miadlikowska, Jolanta M.

  1. U'Ren, JM; Oita, S; Lutzoni, F; Miadlikowska, J; Ball, B; Carbone, I; May, G; Zimmerman, NB; Valle, D; Trouet, V; Arnold, AE, Environmental drivers and cryptic biodiversity hotspots define endophytes in Earth's largest terrestrial biome., Current biology : CB, vol. 34 no. 5 (March, 2024), pp. 1148-1156.e7 [doi]  [abs]
  2. Magain, N; Miadlikowska, J; Goffinet, B; Goward, T; Pardo-De la Hoz, CJ; Jüriado, I; Simon, A; Mercado-Díaz, JA; Barlow, T; Moncada, B; Lücking, R; Spielmann, A; Canez, L; Wang, LS; Nelson, P; Wheeler, T; Lutzoni, F; Sérusiaux, E, High species richness in the lichen genus Peltigera (Ascomycota, Lecanoromycetes): 34 species in the dolichorhizoid and scabrosoid clades of section Polydactylon, including 24 new to science, Persoonia: Molecular Phylogeny and Evolution of Fungi, vol. 51 (December, 2023), pp. 1-88 [doi]  [abs]
  3. Miadlikowska, J; Magain, N; Medeiros, ID; Pardo-De La Hoz, CJ; Carbone, I; Lagreca, S; Barlow, T; Myllys, L; Schmull, M; Lutzoni, F, Towards a nomenclatural clarification of the Peltigera ponojensis/monticola clade including metagenomic sequencing of type material and the introduction of P. globulata Miadl. & Magain sp. nov., Lichenologist, vol. 55 no. 5 (September, 2023), pp. 315-324 [doi]  [abs]
  4. Pardo-De la Hoz, CJ; Magain, N; Piatkowski, B; Cornet, L; Dal Forno, M; Carbone, I; Miadlikowska, J; Lutzoni, F, Ancient Rapid Radiation Explains Most Conflicts Among Gene Trees and Well-Supported Phylogenomic Trees of Nostocalean Cyanobacteria., Systematic biology, vol. 72 no. 3 (June, 2023), pp. 694-712 [doi]  [abs]

Pryer, Kathleen M.

  1. Hay, NM; Windham, MD; Mandáková, T; Lysak, MA; Hendriks, KP; Mummenhoff, K; Lens, F; Pryer, KM; Bailey, CD, A Hyb-Seq phylogeny of Boechera and related genera using a combination of Angiosperms353 and Brassicaceae-specific bait sets., American journal of botany, vol. 110 no. 10 (October, 2023), pp. e16226 [doi]  [abs]
  2. Hay, NM; Akinwuntan, JV; Cai, V; Windham, MD; Pryer, KM, Exploring Past and Future Distributions of the Rare Appalachian Oak Fern Using MaxEnt Modeling, American Fern Journal, vol. 113 no. 2 (June, 2023), pp. 109-125 [doi]  [abs]
  3. Windham, MD; Picard, KT; Pryer, KM, An in-depth investigation of cryptic taxonomic diversity in the rare endemic mustard Draba maguirei., American journal of botany, vol. 110 no. 3 (March, 2023), pp. 1-22 [doi]  [abs]

Shaw, A. Jonathan

  1. Healey, AL; Piatkowski, B; Lovell, JT; Sreedasyam, A; Carey, SB; Mamidi, S; Shu, S; Plott, C; Jenkins, J; Lawrence, T; Aguero, B; Carrell, AA; Nieto-Lugilde, M; Talag, J; Duffy, A; Jawdy, S; Carter, KR; Boston, L-B; Jones, T; Jaramillo-Chico, J; Harkess, A; Barry, K; Keymanesh, K; Bauer, D; Grimwood, J; Gunter, L; Schmutz, J; Weston, DJ; Shaw, AJ, Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics., Nature plants, vol. 9 no. 2 (February, 2023), pp. 238-254 [doi]  [abs]
  2. Robinson, S. C., M. Nieto-Lugilde, A. M. Duffy, K. M. Munoz, B. Aguero, A. Merced, K. Hassel, K. I. Flatberg, & A. J. Shaw. 2023, The Sphagnum cuspidatum complex: phylogeny, specie delimitation, and morphology, Biological Journal of the Linnean Society, vol. https://doi.org/10.1093/biolinnean/blad1 (2023)
  3. Piatkowski, B., D. J. Weston, B. Aguero, A. Duffy, K. Imwattana, A. L. Healey, J. Schmutz, & A. Jonathan Shaw, Divergent selection fuels genomic differentiation between incipient species of Sphagnum (peat moss), Annals of Botany, vol. 132 (2023), pp. 499–512
  4. Shaw, A. J., M. Nieto-Lugilde, B. Aguero, A. Duffy, B. T. Piatkowski, J. Jaramillo-Chico, S. Robinson, K. Hassel, K. I. Flatberg, D. J. Weston, S. Schuette, & K. A. Hicks, Sphagnum diabolicum sp. nov. and S. magniae sp. nov.; morphological variation and taxonomy of the “S. magellanicum complex”, The Bryologist, vol. 126 (2023), pp. 69-89
  5. Shaw, A. J., A. Duffy, M. Nieto-Lugilde, B. Aguero, S. Schuette, S. Robinson, J. Loveland, K. A. Hicks, D. Weston, B. Piatkowski, M. Kolton, J. Koska, & A. Healey, Clonality, local population structure, and gametophyte sex ratios in cryptic species of the Sphagnum magellanicum complex, Annals of Botany, vol. 132 (2023), pp. 77–94
  6. Wieczynski, D., Yoshimura, K., Denison, E., Geisen, S., DeBruyn, J., Shaw, A. J., Weston, D., Pelletier, D., Wilhelm, S., J-P., Gibert, Viral infections likely mediate microbial controls on ecosystem responses to global warming, FEMS Microbiology Ecology (2023)

Vilgalys, Rytas J.

  1. Marqués-Gálvez, JE; Pandharikar, G; Basso, V; Kohler, A; Lackus, ND; Barry, K; Keymanesh, K; Johnson, J; Singan, V; Grigoriev, IV; Vilgalys, R; Martin, F; Veneault-Fourrey, C, Populus MYC2 orchestrates root transcriptional reprogramming of defence pathway to impair Laccaria bicolor ectomycorrhizal development., The New phytologist, vol. 242 no. 2 (April, 2024), pp. 658-674 [doi]  [abs]
  2. Lofgren, L; Nguyen, NH; Kennedy, P; Pérez-Pazos, E; Fletcher, J; Liao, H-L; Wang, H; Zhang, K; Ruytinx, J; Smith, AH; Ke, Y-H; Cotter, HVT; Engwall, E; Hameed, KM; Vilgalys, R; Branco, S, Suillus: an emerging model for the study of ectomycorrhizal ecology and evolution., The New phytologist (April, 2024) [doi]  [abs]
  3. Swenie, RA; Looney, BP; Ke, Y-H; Alejandro Rojas, J; Cubeta, MA; Langer, GJ; Vilgalys, R; Brandon Matheny, P, PacBio high-throughput multi-locus sequencing reveals high genetic diversity in mushroom-forming fungi., Molecular ecology resources, vol. 24 no. 1 (January, 2024), pp. e13885 [doi]  [abs]
  4. Zhang, K; Wang, H; Tappero, R; Bhatnagar, JM; Vilgalys, R; Barry, K; Keymanesh, K; Tejomurthula, S; Grigoriev, IV; Kew, WR; Eder, EK; Nicora, CD; Liao, H-L, Ectomycorrhizal fungi enhance pine growth by stimulating iron-dependent mechanisms with trade-offs in symbiotic performance., The New phytologist (December, 2023) [doi]  [abs]
  5. Gryganskyi, AP; Golan, J; Muszewska, A; Idnurm, A; Dolatabadi, S; Mondo, SJ; Kutovenko, VB; Kutovenko, VO; Gajdeczka, MT; Anishchenko, IM; Pawlowska, J; Tran, NV; Ebersberger, I; Voigt, K; Wang, Y; Chang, Y; Pawlowska, TE; Heitman, J; Vilgalys, R; Bonito, G; Benny, GL; Smith, ME; Reynolds, N; James, TY; Grigoriev, IV; Spatafora, JW; Stajich, JE, Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned?, Microorganisms, vol. 11 no. 7 (July, 2023), pp. 1830 [doi]  [abs]
  6. Ke, Y-H; Branco, S; Bazzicalupo, AL; Nguyen, NH; Liao, H-L; Kennedy, P; Bruns, TD; Kuo, A; LaButti, K; Barry, K; Grigoriev, I; Vilgalys, R, Genomic determination of breeding systems and trans-specific evolution of HD MAT genes in suilloid fungi., Genetics, vol. 224 no. 2 (May, 2023), pp. iyad069 [doi]  [abs]
  7. Policelli, N; Hoeksema, JD; Moyano, J; Vilgalys, R; Vivelo, S; Bhatnagar, JM, Global pine tree invasions are linked to invasive root symbionts., The New phytologist, vol. 237 no. 1 (January, 2023), pp. 16-21 [doi]
  8. PB Matheny, JM Curtis, V Hofstetter, MC Aime, JM Moncalvo, ZW Ge, JC Slot, JF Ammirati, TJ Baroni, NL Bougher, KW Hughes, DJ Lodge, RW Kerrigan, MT Seidl, DK Aanen, M DeNitis, GM Daniele, DE Desjardin, BR Kropp, LL Norvell, A Parker, EC Vellinga, R Vilgalys, DS Hibbett, Major clades of Agaricales: a multilocus phylogenetic overview., Mycologia, United States, vol. 98 no. 6 (October, 2007), pp. 982-95, ISSN 0027-5514  [abs]
  9. JM Moncalvo, RH Nilsson, B Koster, SM Dunham, T Bernauer, PB Matheny, TM Porter, S Margaritescu, M Weiss, S Garnica, E Danell, G Langer, E Langer, E Larsson, KH Larsson, R Vilgalys, The cantharelloid clade: dealing with incongruent gene trees and phylogenetic reconstruction methods., Mycologia, United States, vol. 98 no. 6 (October, 2007), pp. 937-48, ISSN 0027-5514  [abs]
  10. TY James, PM Letcher, JE Longcore, SE Mozley-Standridge, D Porter, MJ Powell, GW Griffith, R Vilgalys, A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota)., Mycologia, United States, vol. 98 no. 6 (October, 2007), pp. 860-71, ISSN 0027-5514  [abs]
  11. AE Arnold, DA Henk, RL Eells, F Lutzoni, R Vilgalys, Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR., Mycologia, United States, vol. 99 no. 2 (September, 2007), pp. 185-206, ISSN 0027-5514  [abs]
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