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Duke Herbarium : Publications since January 2025

List all publications in the database.    :chronological  alphabetical  combined  bibtex listing:

Aguero, Blanka

  1. Shaw, AJ; Duffy, AM; Aguero, B; Nieto-Lugilde, M; Imwattana, K; Robinson, SC; Schuette, S; Wilkens, RT; Yavitt, J; Weston, DJ; Piatkowski, B; Granath, G, Climate niches structure a regional hybrid zone in Sphagnum (peatmoss, Bryophyta)., American journal of botany (December, 2025), pp. e70143, Wiley [doi]  [abs]
  2. Hagge, P; King-Doonan, E; Lutzoni, F; Miadlikowska, J; Aguero, B; Whitby, H; Umbanhowar, C; Colesie, C; Arnold, AE; Yitong, E; Cassar, N, Nitrogen fixation in Arctic lichens and mosses: A survey across circumpolar subzones., The Science of the total environment, vol. 999 (October, 2025), pp. 180264 [doi]  [abs]
  3. Little, DP; Aguero, B; Shaw, AJ; Tessler, M, AI for difficult herbarium specimens: identification of peat mosses (subgenus Sphagnum) without dissection., The New phytologist (August, 2025) [doi]  [abs]
  4. Jonathan Shaw, A; Nieto-Lugilde, M; Aguero, B; Duffy, AM; Robinson, S; Hassel, K; Flatberg, KI; Ingerpuu, N; Vellak, K; Pérez-Haase, A; Jiroušek, M; Krebs, M; Juselius-Rajamäki, T; Piilo, S; Robroek, B; Lamkowski, P; Granath, G, Genetic structure of the Sphagnum magellanicum (Sphagnaceae) complex in Europe, Bryologist, vol. 128 no. 3 (July, 2025), pp. 474-486 [doi]  [abs]
  5. Garfias-Gallegos, D; Pardo-De la Hoz, CJ; Haughland, DL; Magain, N; Aguero, B; Miadlikowska, J; Lutzoni, F, Central metabolism and development are rewired in lichenized cyanobacteria., The ISME journal, vol. 19 no. 1 (January, 2025), pp. wraf166 [doi]  [abs]

Lutzoni, Francois M.

  1. Hagge, P; King-Doonan, E; Lutzoni, F; Miadlikowska, J; Aguero, B; Whitby, H; Umbanhowar, C; Colesie, C; Arnold, AE; Yitong, E; Cassar, N, Nitrogen fixation in Arctic lichens and mosses: A survey across circumpolar subzones., The Science of the total environment, vol. 999 (October, 2025), pp. 180264 [doi]  [abs]
  2. Pardo-De la Hoz, CJ; Haughland, DL; Thauvette, D; Toni, S; Goyette, S; White, W; Medeiros, ID; Cornet, L; Dvořák, P; Garfias-Gallegos, D; Miadlikowska, J; Magain, N; Lutzoni, F, Rapid Radiations Outweigh Reticulations During the Evolution of a 750-Million-Year-Old Lineage of Cyanobacteria., Molecular biology and evolution, vol. 42 no. 10 (October, 2025), pp. msaf244 [doi]  [abs]
  3. Eufemio, RJ; Renzer, G; Rojas, M; Miadlikowska, J; Sformo, TL; Lutzoni, F; Vinatzer, BA; Meister, K, Peltigera lichen thalli produce highly potent ice-nucleating agents, Biogeosciences, vol. 22 no. 8 (April, 2025), pp. 2087-2096 [doi]  [abs]
  4. Garfias-Gallegos, D; Pardo-De la Hoz, CJ; Haughland, DL; Magain, N; Aguero, B; Miadlikowska, J; Lutzoni, F, Central metabolism and development are rewired in lichenized cyanobacteria., The ISME journal, vol. 19 no. 1 (January, 2025), pp. wraf166 [doi]  [abs]

Miadlikowska, Jolanta M.

  1. Hagge, P; King-Doonan, E; Lutzoni, F; Miadlikowska, J; Aguero, B; Whitby, H; Umbanhowar, C; Colesie, C; Arnold, AE; Yitong, E; Cassar, N, Nitrogen fixation in Arctic lichens and mosses: A survey across circumpolar subzones., The Science of the total environment, vol. 999 (October, 2025), pp. 180264 [doi]  [abs]
  2. Pardo-De la Hoz, CJ; Haughland, DL; Thauvette, D; Toni, S; Goyette, S; White, W; Medeiros, ID; Cornet, L; Dvořák, P; Garfias-Gallegos, D; Miadlikowska, J; Magain, N; Lutzoni, F, Rapid Radiations Outweigh Reticulations During the Evolution of a 750-Million-Year-Old Lineage of Cyanobacteria., Molecular biology and evolution, vol. 42 no. 10 (October, 2025), pp. msaf244 [doi]  [abs]
  3. Eufemio, RJ; Renzer, G; Rojas, M; Miadlikowska, J; Sformo, TL; Lutzoni, F; Vinatzer, BA; Meister, K, Peltigera lichen thalli produce highly potent ice-nucleating agents, Biogeosciences, vol. 22 no. 8 (April, 2025), pp. 2087-2096 [doi]  [abs]
  4. Garfias-Gallegos, D; Pardo-De la Hoz, CJ; Haughland, DL; Magain, N; Aguero, B; Miadlikowska, J; Lutzoni, F, Central metabolism and development are rewired in lichenized cyanobacteria., The ISME journal, vol. 19 no. 1 (January, 2025), pp. wraf166 [doi]  [abs]

Pryer, Kathleen M.

  1. Schuettpelz, E; Windham, MD; Prado, J; Hooper, EA; Yatskievych, G; Huiet, L; Picard, KT; Pryer, KM, Corrigendum and Addendum to: “A phylogenetically informed generic reclassification of the hemionitid ferns (Pteridaceae: Cheilanthoideae)” [in Taxon 74: 260–291. 2025], TAXON (December, 2025), Wiley [doi]
  2. Hay, NM; Windham, MD; Pryer, KM, Microsatellite, Hyb-Seq, and morphological studies confirm the enigmatic mustard Boechera tiehmii as an intergeneric hybrid., American journal of botany, vol. 112 no. 12 (December, 2025), pp. e70132 [doi]  [abs]
  3. Fauskee, BD; Kuo, L-Y; Heath, TA; Xie, P-J; Pryer, KM, Comparative phylogenetic analyses of RNA editing in fern plastomes suggest possible adaptive innovations., The New phytologist, vol. 247 no. 6 (September, 2025), pp. 2945-2963, Wiley [doi]  [abs]
  4. Windham, MD; Mandáková, T; Dunn, T; Hay, NM; Pryer, KM, Resolving taxonomic complexity in the genus Boechera (Brassicaceae) using the Boechera Microsatellite Website: a case study of the rare triploid B. bodiensis., Annals of botany (September, 2025), pp. mcaf217 [doi]  [abs]
  5. Fauskee, BD; Windham, MD; Pryer, KM, Ynesmexia: A novel genus uniting morphologically disparate cheilanthoid ferns (Pteridaceae), Taxon, vol. 74 no. 4 (August, 2025), pp. 768-786, Wiley [doi]  [abs]
  6. Hay, NM; Pryer, KM; Windham, MD, Phasing Hyb-Seq loci from two combined bait sets to investigate phylogenetic patterns of hybridization within Boechera s.s. (Brassicaceae)., Annals of botany (August, 2025), pp. mcaf202 [doi]  [abs]
  7. Schuettpelz, E; Windham, MD; Prado, J; Hooper, EA; Yatskievych, G; Huiet, L; Picard, KT; Pryer, KM, A phylogenetically informed generic reclassification of the hemionitid ferns (Pteridaceae: Cheilanthoideae), Taxon, vol. 74 no. 2 (April, 2025), pp. 260-291, Wiley [doi]  [abs]
  8. Rothfels, CJ; Lee, J; Sundue, MA; Smith, AR; Kasameyer, A; Gross, J; Holman, G; Hu, S; von Konrat, M; Sessa, EB; Watson, K; Weakley, A; Zhang, L; Gensel, P; Hassler, M; Pearson, KD; Gilbert, E; Burnham, RJ; Rabeler, RK; Sweeney, P; Vasco, A; Testo, W; Giblin, DE; Ickert-Bond, SM; Landis, M; Link-Perez, M; Livshultz, T; Miller, I; Neefus, C; Pigg, K; Power, M; Prather, A; Rehman, T; Struwe, L; Vincent, M; Weiblen, G; Whitfeld, T; Windham, MD; Yatskievych, G; Liston, A; Makings, E; Pryer, KM; Strömberg, C; Atri, E; Best, J; Glasspool, I; Huiet, L; Johnson, E; King, MR; Klymiuk, A; Lupia, R; Majure, LC; McCormick, CA; McCourt, R; Oberreiter, S; Perkins, KD; Rodriguez, Y; Smith, C; Solomon, J; Teisher, J; Ford-Werntz, D; Fuehrding-Potschkat, P; Little, H; Ranker, TA; Schuettpelz, E; Tribble, CM; Erwin, DM; Looy, CV, The PteridoPortal: A publicly accessible collection of over three million records of extant and extinct pteridophytes., Applications in plant sciences, vol. 13 no. 2 (March, 2025), pp. e70003, Wiley [doi]  [abs]
  9. Dumaw, KE; Pryer, KM; Windham, MD; Hay, NM, HERBARIUM SPECIMENS REVEAL A SIGNIFICANTLY EARLIER FLOWERING TREND FOR CYPRIPEDIUM ACAULE (ORCHIDACEAE) IN NORTH CAROLINA (U.S.A.), Journal of the Botanical Research Institute of Texas, vol. 19 no. 3 (January, 2025), pp. 211-221 [doi]  [abs]

Shaw, A. Jonathan

  1. Little, DP; Aguero, B; Shaw, AJ; Tessler, M, AI for difficult herbarium specimens: identification of peat mosses (subgenus Sphagnum) without dissection., The New phytologist (August, 2025) [doi]  [abs]
  2. Turetsky, MR; Weston, DJ; Cox, WD; Petro, C; Shaw, AJ, The challenging but unique eco-evolutionary aspects of Sphagnum moss., The New phytologist, vol. 247 no. 4 (August, 2025), pp. 1608-1621 [doi]  [abs]
  3. Živković, T; Carrell, AA; Granath, G; Shaw, AJ; Pelletier, DA; Schadt, CW; Klingeman, DM; Nilsson, MB; Helbig, M; Warshan, D; Klarenberg, IJ; Gilbert, D; Kostka, JE; Weston, DJ, Host Species-Microbiome Interactions Contribute to Sphagnum Moss Growth Acclimation to Warming., Global change biology, vol. 31 no. 2 (February, 2025), pp. e70066 [doi]  [abs]

Vilgalys, Rytas J.

  1. Nash, J; Tremble, K; Schadt, C; Cregger, MA; Bryan, C; Vilgalys, R, Time-series RNA metabarcoding of the active <i>Populus tremuloides</i> root microbiome reveals hidden temporal dynamics and dormant core members., mSystems, vol. 10 no. 12 (December, 2025), pp. e0028525 [doi]  [abs]
  2. Cosner, J; Pandharikar, G; Tremble, K; Nash, J; Rush, TA; Vilgalys, R; Veneault-Fourrey, C, Fungal endophytes., Current biology : CB, vol. 35 no. 19 (October, 2025), pp. R904-R910 [doi]  [abs]
  3. Vietorisz, CR; Nash, JA; Siggers, JA; Leander, EJ; Bock, BM; Camuy-Vélez, LA; Hall, AJ; Jaros, JE; Kuehn, KA; Lai, EY; Mounts, IR; Bacy, IJ; Dagg, CE; Anderson, IC; Carnegie, AJ; Powell, JR; Brewer, JS; D'Antonio, CM; Hynson, NA; Vilgalys, RJ; Hoeksema, JD, Pine-fungal co-invasion alters whole-ecosystem properties of a native eucalypt forest., The New phytologist, vol. 247 no. 5 (September, 2025), pp. 2342-2356 [doi]  [abs]
  4. Nash, J; Looney, B; Cregger, MA; Schadt, C; Vilgalys, R, Dual-mycorrhizal colonization is determined by plant age and host identity in two species of Populus., Mycorrhiza, vol. 35 no. 3 (June, 2025), pp. 42, Springer Science and Business Media LLC [doi]  [abs]
  5. Wang, H; Zhang, K; Tappero, R; Victor, TW; Bhatnagar, JM; Vilgalys, R; Liao, H-L, Inorganic nitrogen and organic matter jointly regulate ectomycorrhizal fungi-mediated iron acquisition., The New phytologist, vol. 245 no. 6 (March, 2025), pp. 2715-2725 [doi]  [abs]
  6. Nash, J; Tremble, K; Schadt, C; Cregger, MA; Bryan, C; Vilgalys, R, Time-series RNA metabarcoding of the active Populus tremuloides root microbiome reveals hidden temporal dynamics and dormant core members, in Cold Spring Harbor Laboratory (February, 2025) [doi]
  7. Benitez Ponce, MS; Hersh, MH; Becker, L; Vilgalys, R; Clark, JS, Fungal community and taxa specialization to host and environment interactions in two temperate forests., PloS one, vol. 20 no. 5 (January, 2025), pp. e0322440 [doi]  [abs]
  8. PB Matheny, JM Curtis, V Hofstetter, MC Aime, JM Moncalvo, ZW Ge, JC Slot, JF Ammirati, TJ Baroni, NL Bougher, KW Hughes, DJ Lodge, RW Kerrigan, MT Seidl, DK Aanen, M DeNitis, GM Daniele, DE Desjardin, BR Kropp, LL Norvell, A Parker, EC Vellinga, R Vilgalys, DS Hibbett, Major clades of Agaricales: a multilocus phylogenetic overview., Mycologia, United States, vol. 98 no. 6 (October, 2007), pp. 982-95, ISSN 0027-5514  [abs]
  9. JM Moncalvo, RH Nilsson, B Koster, SM Dunham, T Bernauer, PB Matheny, TM Porter, S Margaritescu, M Weiss, S Garnica, E Danell, G Langer, E Langer, E Larsson, KH Larsson, R Vilgalys, The cantharelloid clade: dealing with incongruent gene trees and phylogenetic reconstruction methods., Mycologia, United States, vol. 98 no. 6 (October, 2007), pp. 937-48, ISSN 0027-5514  [abs]
  10. TY James, PM Letcher, JE Longcore, SE Mozley-Standridge, D Porter, MJ Powell, GW Griffith, R Vilgalys, A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota)., Mycologia, United States, vol. 98 no. 6 (October, 2007), pp. 860-71, ISSN 0027-5514  [abs]
  11. AE Arnold, DA Henk, RL Eells, F Lutzoni, R Vilgalys, Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR., Mycologia, United States, vol. 99 no. 2 (September, 2007), pp. 185-206, ISSN 0027-5514  [abs]
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