
Papers Published
 Rutkowski, DM; Marcoux, C; Socolar, JES; Hall, CK, Formation of limitperiodic structures by quadrupole particles confined to a triangular lattice,
Physical review. E, vol. 95 no. 1
(January, 2017), American Physical Society [doi] [abs]
 Hann, CT; Socolar, JES; Steinhardt, PJ, Local growth of icosahedral quasicrystalline tilings,
Physical Review B, vol. 94 no. 1
(July, 2016) [1604.02479v1], [doi] [abs]
 Marcoux, C; Socolar, JES, Sparse phonon modes of a limitperiodic structure,
Physical Review B  Condensed Matter and Materials Physics, vol. 93 no. 17
(May, 2016), American Physical Society, ISSN 01631829 [PhysRevB.93.174102], [doi] [abs]
 Fu, L; Steinhardt, W; Zhao, H; Socolar, JE; Charbonneau, P, Hard sphere packings within cylinders.,
Soft Matter, vol. 12 no. 9
(March, 2016),
pp. 25052514, ISSN 1744683X [doi] [abs]
 Marcoux, C; Byington, TW; Qian, Z; Charbonneau, P; Socolar, JES, Erratum: Emergence of limitperiodic order in tiling models [Phys. Rev. E 90 , 012136 (2014)],
Physical review. E, vol. 93 no. 2
(February, 2016), ISSN 24700045 [doi]
 Yang, Y; Fu, L; Marcoux, C; Socolar, JE; Charbonneau, P; Yellen, BB, Phase transformations in binary colloidal monolayers.,
Soft Matter, vol. 11 no. 12
(March, 2015),
pp. 24042415, ISSN 1744683X [doi] [abs]
 Sun, M; Cheng, X; Socolar, JE, Regulatory logic and pattern formation in the early sea urchin embryo.,
Journal of Theoretical Biology, vol. 363
(December, 2014),
pp. 8092, ISSN 00225193 [doi] [abs]
 Marcoux, C; Byington, TW; Qian, Z; Charbonneau, P; Socolar, JE, Emergence of limitperiodic order in tiling models.,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 90 no. 1
(July, 2014),
pp. 012136, American Physical Society, ISSN 15393755 [PhysRevE.90.012136], [doi] [abs]
 Cheng, X; Lyons, DC; Socolar, JE; McClay, DR, Delayed transition to new cell fates during cellular reprogramming.,
Developmental Biology, vol. 391 no. 2
(April, 2014),
pp. 147157, ISSN 00121606 [S001216061400222X], [doi] [abs]
 Sun, M; Cheng, X; Socolar, JE, Causal structure of oscillations in gene regulatory networks: Boolean analysis of ordinary differential equation attractors.,
Chaos, vol. 23 no. 2
(June, 2013),
pp. 025104 [23822502], [doi] [abs]
 Cheng, X; Sun, M; Socolar, JE, Autonomous Boolean modelling of developmental gene regulatory networks.,
Journal of the Royal Society Interface, vol. 10 no. 78
(January, 2013),
pp. 20120574 [23034351], [doi] [abs]
 Byington, T; Socolar, JES, Hierarchical freezing of limitperiodic structure,
Physical Review E
(November, 2012)
 Gong, X; Socolar, JE, Quantifying the complexity of random Boolean networks.,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 85 no. 6 Pt 2
(2012),
pp. 066107 [23005162], [doi] [abs]
 Khalil, KS; Sagastegui, A; Li, Y; Tahir, MA; Socolar, JE; Wiley, BJ; Yellen, BB, Binary colloidal structures assembled through Ising interactions.,
Nature Communications, vol. 3
(April, 2012),
pp. 794 [22531179], [doi] [abs]
 Durrett, R; Gleeson, JP; Lloyd, AL; Mucha, PJ; Shi, F; Sivakoff, D; Socolar, JE; Varghese, C, Graph fission in an evolving voter model.,
Proceedings of the National Academy of Sciences of USA, vol. 109 no. 10
(2012),
pp. 36823687 [22355142], [doi] [abs]
 Byington, TW; Socolar, JE, Hierarchical freezing in a lattice model.,
Physical Review Letters, vol. 108 no. 4
(January, 2012),
pp. 045701 [22400863], [doi] [abs]
 Sun, M; Socolar, JES, Comparison of autonomous Boolean network dynamics and ODE models,
Chaos
(2012)
 Socolar, JES; Taylor, JM, Forcing Nonperiodicity with a Single Tile,
The Mathematical Intelligencer, vol. 34 no. 1
(Spring, 2012),
pp. 1828, ISSN 03436993 [doi] [abs]
 Cheng, X; Sun, M; Socolar, JES, Autonomous Boolean modelling of developmental gene regulatory networks,
J. Royal Soc. Interface, vol. 10 no. 78
(January, 2013),
pp. 20120574 [23034351], [doi] [abs]
 Socolar, JE, Local action, global impact: forcing nonperiodicity with a single structural unit.,
Chaos, vol. 21 no. 4
(December, 2011),
pp. 041106 [22225336], [doi] [abs]
 Socolar, JES; Taylor, JM, An aperiodic hexagonal tile,
Journal of Combinatorial Theory, Series A, vol. 118 no. 8
(2011),
pp. 22072231, Academic Press, Inc., Orlando, FL, USA, ISSN 00973165 [doi] [abs]
 Cavalcante, HL; Gauthier, DJ; Socolar, JE; Zhang, R, On the origin of chaos in autonomous Boolean networks.,
Philosophical Transactions A, vol. 368 no. 1911
(January, 2010),
pp. 495513, ISSN 1364503X [20008414], [doi] [abs]
 Sevim, V; Gong, X; Socolar, JES, Reliability of transcriptional cycles and the yeast cellcycle oscillator.,
PLoS computational biology, vol. 6 no. 7
(2010),
pp. e1000842, ISSN 15537358 [20628620], [doi] [abs]
 Zhang, R; de S Cavalcante, HL; Gao, Z; Gauthier, DJ; Socolar, JE; Adams, MM; Lathrop, DP, Boolean chaos.,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 80 no. 4 Pt 2
(October, 2009),
pp. 045202 [19905381], [doi] [abs]
 Norrell, J; Socolar, JE, Boolean modeling of collective effects in complex networks.,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 79 no. 6
(2009),
pp. nihpa131303 [19649269], [doi] [abs]
 Orlando, DA; Lin, CY; Bernard, A; Wang, JY; Socolar, JE; Iversen, ES; Hartemink, AJ; Haase, SB, Global control of cellcycle transcription by coupled CDK and network oscillators.,
Nature, vol. 453 no. 7197
(June, 2008),
pp. 944947 [18463633], [doi] [abs]
 Socolar, JES, TimeDelay Control for Discrete Maps
(May, 2008),
pp. 2945 [doi] [abs]
 D.A. Orlando, C.Y. Lin, A. Bernard, J.Y. Wang, J.E.S. Socolar, E.S. Iversen, A.J. Hartemink, and S.B. Haase, Global control of cellcycle transcription by coupled CDK and network oscillators,
Nature
(May 7, 2008) [doi]
 Tighe, BP; Socolar, JE, Nonlinear elastic stress response in granular packings.,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 77 no. 3 Pt 1
(March, 2008),
pp. 031303, ISSN 15393755 [18517366], [doi] [abs]
 Ribeiro, AS; Kauffman, SA; LloydPrice, J; Samuelsson, B; Socolar, JE, Mutual information in random Boolean models of regulatory networks.,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 77 no. 1 Pt 1
(2008),
pp. 011901, ISSN 15393755 [18351870], [doi] [abs]
 J.E.S. Socolar, Timedelay control for discrete maps,
in Handbook of Chaos Control, edited by E. Scholl and H. G. Schuster
(December, 2007), WileyVCH Verlag GmbH [html] [abs]
 Norrell, J; Samuelsson, B; Socolar, JE, Attractors in continuous and Boolean networks.,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 76 no. 4 Pt 2
(October, 2007),
pp. 046122, ISSN 15393755 [17995075], [doi] [abs]
 Berger, CM; Cain, JW; Socolar, JE; Gauthier, DJ, Control of electrical alternans in simulations of paced myocardium using extended timedelay autosynchronization.,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 76 no. 4 Pt 1
(October, 2007),
pp. 041917, ISSN 15393755 (Selected for Virtual Journal of Biological Physics Research.) [17995036], [doi] [abs]
 Shreim, A; Grassberger, P; Nadler, W; Samuelsson, B; Socolar, JE; Paczuski, M, Network analysis of the state space of discrete dynamical systems.,
Physical Review Letters, vol. 98 no. 19
(May, 2007),
pp. 198701, ISSN 00319007 [17677672], [doi] [abs]
 Socolar, JES, Erratum: The hexagonal parquet tiling, kisohedral monotiles with arbitrarily large k (The Mathematical Intelligencer 29:2 (3338)),
The Mathematical Intelligencer, vol. 29 no. 4
(2007),
pp. 6, ISSN 03436993 [doi]
 Socolar, JES, The hexagonal parquet tiling kisohedral monotiles with arbitrarily large k,
The Mathematical Intelligencer, vol. 29 no. 2
(2007),
pp. 3338, ISSN 03436993 [pdf], [doi] [abs] [author's comments]
 Foster, DV; Kauffman, SA; Socolar, JE, Network growth models and genetic regulatory networks.,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 73 no. 3 Pt 1
(2006),
pp. 031912, ISSN 15393755 [16605563], [doi] [abs]
 J.E.S. Socolar, Nonlinear Dynamical Systems,
in Complex Systems Science and Biomedicine, edited by Deisboeck and Kresh
(February, 2006), Kluwer [author's comments]
 Samuelsson, B; Socolar, JES, Exhaustive percolation on random networks,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 74 no. 3
(2006),
pp. 031912, ISSN 15393755 [e036113], [doi] [abs]
 Tighe, BP; Socolar, JE; Schaeffer, DG; Mitchener, WG; Huber, ML, Force distributions in a triangular lattice of rigid bars.,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 72 no. 3 Pt 1
(September, 2005),
pp. 031306, ISSN 15393755 [16241425], [doi] [abs]
 Dealy, S; Kauffman, S; Socolar, J, Modeling pathways of differentiation in genetic regulatory networks with Boolean networks,
Complexity, vol. 11 no. 1
(2005),
pp. 5260, ISSN 10762787 [doi] [abs]
 Harrington, I; Socolar, JES, Design and robustness of delayed feedback controllers for discrete systems,
Phys. Rev. E, vol. 69 no. 5 1
(2004),
pp. 56207, ISSN 15393755 [abs]
 Harrington, I; Socolar, JES, Design and robustness of delayed feedback controllers for discrete systems,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 69 no. 5 1
(2004),
pp. 05620710562078, ISSN 15393755 [abs]
 Hövel, P; Socolar, JE, Stability domains for timedelay feedback control with latency.,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 68 no. 3 Pt 2
(2003),
pp. 036206, ISSN 15393755 [14524867], [doi] [abs]
 Socolar, JE; Kauffman, SA, Scaling in ordered and critical random boolean networks.,
Physical Review Letters, vol. 90 no. 6
(February, 2003),
pp. 068702, ISSN 00319007 [12633339], [doi] [abs]
 Hövel, P; Socolar, JES, Stability domains for timedelay feedback control with latency,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 68 no. 3 2
(2003),
pp. 362061362067 [abs]
 Otto, M; Bouchaud, JP; Claudin, P; Socolar, JES, Anisotropy in granular media: Classical elasticity and directedforce chain network,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 67 no. 3 1
(2003),
pp. 031302/1031302/24, ISSN 1063651X [0211015v2], [doi] [abs]
 Socolar, JES, Discrete models of force chain networks,
Discrete and Continuous Dynamical Systems  Series B, vol. 3 no. 4
(2003),
pp. 601618, ISSN 15313492 [0212162] [abs]
 Socolar, JES; Schaeffer, DG; Claudin, P, Erratum: Directed force chain networks and stress response in static granular materials (The European Physical Journal E (2002) 7 (353370)),
European Physical Journal E, vol. 8 no. 4
(2002),
pp. 453
 Socolar, JES; Schaeffer, DG; Claudin, P, Directed force chain networks and stress response in static granular materials,
European Physical Journal E, vol. 7 no. 4
(2002),
pp. 353370 [0201242] [abs]
 Beck, O; Amann, A; Schöll, E; Socolar, JES; Just, W, Comparison of timedelayed feedback schemes for spatiotemporal control of chaos in a reactiondiffusion system with global coupling,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 66 no. 1
(2002),
pp. 016213/1016213/6, ISSN 15393755 [doi] [abs]
 Harrington, I; Socolar, JE, Limitation on stabilizing plane waves via timedelay feedback.,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 64 no. 5 Pt 2
(November, 2001),
pp. 056206, ISSN 15393755 [11736053], [doi] [abs]
 J.E.S Socolar, Chaos,
in Encyclopedia of Physical Science and Technology, 3rd Edition, edited by R. Meyers
(2001), Academic Press (revision of article by R. Jensen.)
 Socolar, JES; Richards, S; Wilson, WG, Evolution in a spatially structured population subject to rare epidemics,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 63 no. 4 I
(2001),
pp. 419081419088 [abs]
 Bleich, ME; Socolar, JES, Delayed feedback control of a paced excitable oscillator,
International Journal of Bifurcation and Chaos in Applied Sciences and Engineering, vol. 10 no. 3
(2000),
pp. 603609 [abs]
 Richards, SA; Wilson, WG; Socolar, JE, Selection for intermediate mortality and reproduction rates in a spatially structured population.,
Proceedings of the Royal Society of London: Biological Sciences, vol. 266 no. 1436
(December, 1999),
pp. 23832388, ISSN 09628452 [10643082], [doi] [abs]
 Sexton, MG; Socolar, JE; Schaeffer, DG, Force distribution in a scalar model for noncohesive granular material.,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 60 no. 2 Pt B
(August, 1999),
pp. 19992008, ISSN 1063651X [11969992] [abs]
 Egolf, DA; Socolar, JES, Failure of linear control in noisy coupled map lattices,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 57 no. 5 SUPPL. A
(1998),
pp. 52715275 [abs]
 Socolar, JES; Gauthier, DJ, Analysis and comparison of multipledelay schemes for controlling unstable fixed points of discrete maps,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 57 no. 6
(1998),
pp. 65896595 [abs]
 Sukow, DW; Bleich, ME; Gauthier, DJ; Socolar, JE, Controlling chaos in a fast diode resonator using extended timedelay autosynchronization: Experimental observations and theoretical analysis.,
Chaos, vol. 7 no. 4
(1997),
pp. 560576 [12779682], [doi] [abs]
 Bleich, ME; Hochheiser, D; Moloney, JV; Socolar, JES, Controlling extended systems with spatially filtered, timedelayed feedback,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 55 no. 3 SUPPL. A
(1997),
pp. 21192126 [abs]
 Gauthier, DJ; Socolar, JES, Comment on Dynamic Control of Cardiac Alternans,
Physical Review Letters, vol. 79
(1997),
pp. 4938
 Bleich, ME; Socolar, JE, Controlling spatiotemporal dynamics with timedelay feedback.,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 54 no. 1
(1996),
pp. R17R20, ISSN 1063651X [9965164]
 Bleich, ME; Socolar, JES, Stability of periodic orbits controlled by timedelay feedback,
Physics Letters, Section A: General, Atomic and Solid State Physics, vol. 210 no. 12
(1995),
pp. 8794 [abs]
 Socolar, JE; Sukow, DW; Gauthier, DJ, Stabilizing unstable periodic orbits in fast dynamical systems.,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 50 no. 4
(1994),
pp. 32453248, ISSN 1063651X [9962372]
 Gauthier, DJ; Sukow, DW; Concannon, HM; Socolar, JE, Stabilizing unstable periodic orbits in a fast diode resonator using continuous timedelay autosynchronization.,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 50 no. 3
(1994),
pp. 23432346, ISSN 1063651X [9962244]
 Grinstein, G; Jayaprakash, C; Socolar, JE, Scale invariance of nonconserved quantities in driven systems.,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 48 no. 2
(1993),
pp. R643R646, ISSN 1063651X [9960763]
 Socolar, JE; Grinstein, G; Jayaprakash, C, On selforganized criticality in nonconserving systems.,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 47 no. 4
(1993),
pp. 23662376, ISSN 1063651X [9960267]
 Krug, J; Socolar, JE; Grinstein, G, Surface fluctuations and criticality in a class of onedimensional sandpile models.,
Physical Review A  Atomic, Molecular, and Optical Physics, vol. 46 no. 8
(October, 1992),
pp. R4479R4482, ISSN 10502947 [9908766]
 Krug, J; Socolar, JE, Comment on "Scalings of growing selforganized surfaces",
Physical Review Letters, vol. 68 no. 5
(1992),
pp. 722 [10045973], [doi]
 Socolar, JES, Theory of Packings of Identical Hard Disks Generated by Ballistic Deposition,
Europhys. Lett., vol. 18
(1992),
pp. 39
 J.E.S. Socolar, Growth Rules for Quasicrystals,
in Quasicrystals: The State of the Art, edited by D. DiVincenzo and P. Steinhardt
(1991), World Scientific, Singapore
 J.E.S. Socolar, The Alternation Condition and 2D Quasicrystals,
in Quasicrystals, Springer Series in SolidState Sciences, edited by T. Fujiwara and T. Ogawa, vol. 93
(1990), SpringerVerlag, Berlin
 Socolar, JES, Weak matching rules for quasicrystals,
Communications in Mathematical Physics, vol. 129 no. 3
(1990),
pp. 599619, ISSN 00103616 [doi] [abs]
 Socolar, JE, Simple octagonal and dodecagonal quasicrystals.,
Physical Review B  Condensed Matter and Materials Physics, vol. 39 no. 15
(1989),
pp. 1051910551, ISSN 01631829 [9947860]
 Onoda, G; Steinhardt, PJ; DiVincenzo, D; Socolar, JE, Onoda etal. reply.,
Physical Review Letters, vol. 62 no. 10
(March, 1989),
pp. 1210 [10039608], [doi]
 J.E.S. Socolar, Locality Constraints and 2D Quasicrystals,
in Quasicrystals  Adriatico Anniversary Research Conference, edited by M.V. Jaric and S. Lundqvist
(1989), World Scientific, Singapore
 Onoda, GY; Steinhardt, PJ; DiVincenzo, DP; Socolar, JE, Growing perfect quasicrystals.,
Physical Review Letters, vol. 60 no. 25
(1988),
pp. 26532656 [10038414], [doi]
 Socolar, JE; Wright, DC, Explanation of peak shapes observed in diffraction from icosahedral quasicrystals.,
Physical Review Letters, vol. 59 no. 2
(1987),
pp. 221224 [10035483], [doi]
 Lubensky, TC; Socolar, JE; Steinhardt, PJ; Bancel, PA; Heiney, AP, Distortion and peak broadening in quasicrystal diffraction patterns.,
Physical Review Letters, vol. 57 no. 12
(1986),
pp. 14401443 [10033450], [doi]
 Socolar, JE; Lubensky, TC; Steinhardt, PJ, Phonons, phasons, and dislocations in quasicrystals.,
Physical Review B  Condensed Matter and Materials Physics, vol. 34 no. 5
(1986),
pp. 33453360, ISSN 01631829 [9940073]
 Socolar, JE; Steinhardt, PJ, Quasicrystals. II. Unitcell configurations.,
Physical Review B  Condensed Matter and Materials Physics, vol. 34 no. 2
(July, 1986),
pp. 617647, ISSN 01631829 [9939668]
 Socolar, JES, Phason Strain in Quasicrystals,
Journal de Physique, vol. C3
(1986),
pp. 217227
 Socolar, JE; Steinhardt, PJ; Levine, D, Quasicrystals with arbitrary orientational symmetry., Rapid Communication,
Physical Review B  Condensed Matter and Materials Physics, vol. 32 no. 8
(1985),
pp. 55475550, ISSN 01631829 [9937798]
 MELE, E; SOCOLAR, J, NUMERICALINTEGRATION OF THE TIME EVOLUTION OPERATOR  EXCITEDSTATE DYNAMICS IN CONJUGATED MOLECULES, Quantum Chemistry Symposium,
International Journal of Quantum Chemistry, vol. 18
(1984),
pp. 347358, ISSN 00207608 [Gateway.cgi]
 Gollub, JP; Romer, EJ; Socolar, JE, Trajectory divergence for coupled relaxation oscillators: Measurements and models,
Journal of Statistical Physics, vol. 23 no. 3
(1980),
pp. 321333, ISSN 00224715 [doi] [abs]
Papers Submitted
 Y. Yang, L. Fu, C. Marcoux, J. E. S. Socolar, P. Charbonneau, B. B. Yellen, Martensitic transformations in binary colloidal monolayers,
PNAS
(October, 2014)
