
Papers Published
 Y Yang, L Fu, C Marcoux, JE Socolar, P Charbonneau and BB Yellen, Phase transformations in binary colloidal monolayers.,
Soft matter, vol. 11 no. 12
(March, 2015),
pp. 24042415, ISSN 1744683X [doi] [abs]
 Y. Yang, L. Fu, C. Marcoux, P. Charbonneau, J.E.S. Socolar, B. B. Yellen, Phase transformations in binary colloidal monolayers,
Soft Matter
(February, 2015) [doi] [abs]
 M Sun, X Cheng and JE Socolar, Regulatory logic and pattern formation in the early sea urchin embryo.,
Journal of theoretical biology, vol. 363
(December, 2014),
pp. 8092, ISSN 00225193 [doi] [abs]
 C Marcoux, TW Byington, Z Qian, P Charbonneau and JE Socolar, Emergence of limitperiodic order in tiling models.,
Physical review. E, Statistical, nonlinear, and soft matter physics, vol. 90 no. 1
(July, 2014),
pp. 012136, American Physical Society, ISSN 15393755 [PhysRevE.90.012136], [doi] [abs]
 X Cheng, DC Lyons, JE Socolar and DR McClay, Delayed transition to new cell fates during cellular reprogramming.,
Developmental biology, vol. 391 no. 2
(April, 2014),
pp. 147157, ISSN 00121606 [S001216061400222X], [doi] [abs]
 M Sun, X Cheng and JE Socolar, Causal structure of oscillations in gene regulatory networks: Boolean analysis of ordinary differential equation attractors.,
Chaos, vol. 23 no. 2
(June, 2013),
pp. 025104 [23822502], [doi] [abs]
 X Cheng, M Sun and JE Socolar, Autonomous Boolean modelling of developmental gene regulatory networks.,
J R Soc Interface, vol. 10 no. 78
(January, 2013),
pp. 20120574 [23034351], [doi] [abs]
 T Byington and JES Socolar, Hierarchical freezing of limitperiodic structure,
Physical Review E
(November, 2012)
 X Gong and JE Socolar, Quantifying the complexity of random Boolean networks.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 85 no. 6 Pt 2
(2012),
pp. 066107 [23005162], [doi] [abs]
 R Durrett, JP Gleeson, AL Lloyd, PJ Mucha, F Shi, D Sivakoff, JE Socolar and C Varghese, Graph fission in an evolving voter model.,
Proc Natl Acad Sci U S A, vol. 109 no. 10
(2012),
pp. 36823687 [22355142], [doi] [abs]
 TW Byington and JE Socolar, Hierarchical freezing in a lattice model.,
Phys Rev Lett, vol. 108 no. 4
(January, 2012),
pp. 045701 [22400863], [doi] [abs]
 M Sun and JES Socolar, Comparison of autonomous Boolean network dynamics and ODE models,
Chaos
(2012)
 JES Socolar and JM Taylor, Forcing Nonperiodicity with a Single Tile,
Mathematical Intelligencer, vol. 34 no. 1
(Spring, 2012),
pp. 1828, ISSN 03436993 [doi] [abs]
 X Cheng, M Sun and JES Socolar, Autonomous Boolean modelling of developmental gene regulatory networks,
J. Royal Soc. Interface, vol. 10 no. 78
(January, 2013),
pp. 20120574 [23034351], [doi] [abs]
 KS Khalil, A Sagastegui, Y Li, MA Tahir, JE Socolar, BJ Wiley and BB Yellen, Binary colloidal structures assembled through Ising interactions.,
Nat Commun, vol. 3
(2012),
pp. 794 [22531179], [doi] [abs]
 JE Socolar, Local action, global impact: forcing nonperiodicity with a single structural unit.,
Chaos, vol. 21 no. 4
(December, 2011),
pp. 041106 [22225336], [doi] [abs]
 JES Socolar and JM Taylor, An aperiodic hexagonal tile,
Journal of Combinatorial Theory. Series A, vol. 118 no. 8
(2011),
pp. 22072231, Academic Press, Inc., Orlando, FL, USA, ISSN 00973165 [doi] [abs]
 HL Cavalcante, DJ Gauthier, JE Socolar and R Zhang, On the origin of chaos in autonomous Boolean networks.,
Philos Trans A Math Phys Eng Sci, vol. 368 no. 1911
(January, 2010),
pp. 495513, ISSN 1364503X [20008414], [doi] [abs]
 V Sevim, X Gong and JE Socolar, Reliability of transcriptional cycles and the yeast cellcycle oscillator.,
PLoS Comput Biol, vol. 6 no. 7
(2010),
pp. e1000842, ISSN 15537358 [20628620], [doi] [abs]
 R Zhang, HL de S Cavalcante, Z Gao, DJ Gauthier, JE Socolar, MM Adams and DP Lathrop, Boolean chaos.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 80 no. 4 Pt 2
(October, 2009),
pp. 045202 [19905381], [doi] [abs]
 J Norrell and JE Socolar, Boolean modeling of collective effects in complex networks.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 79 no. 6
(2009),
pp. nihpa131303 [19649269], [doi] [abs]
 DA Orlando, CY Lin, A Bernard, JY Wang, JE Socolar, ES Iversen, AJ Hartemink and SB Haase, Global control of cellcycle transcription by coupled CDK and network oscillators.,
Nature, vol. 453 no. 7197
(June, 2008),
pp. 944947 [18463633], [doi] [abs]
 JES Socolar, TimeDelay Control for Discrete Maps,
scopus
(May, 2008),
pp. 2945 [doi] [abs]
 D.A. Orlando, C.Y. Lin, A. Bernard, J.Y. Wang, J.E.S. Socolar, E.S. Iversen, A.J. Hartemink, and S.B. Haase, Global control of cellcycle transcription by coupled CDK and network oscillators,
Nature
(May 7, 2008) [doi]
 BP Tighe and JE Socolar, Nonlinear elastic stress response in granular packings.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 77 no. 3 Pt 1
(March, 2008),
pp. 031303, ISSN 15393755 [18517366], [doi] [abs]
 AS Ribeiro, SA Kauffman, J LloydPrice, B Samuelsson and JE Socolar, Mutual information in random Boolean models of regulatory networks.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 77 no. 1 Pt 1
(2008),
pp. 011901, ISSN 15393755 [18351870], [doi] [abs]
 J.E.S. Socolar, Timedelay control for discrete maps,
in Handbook of Chaos Control, edited by E. Scholl and H. G. Schuster
(December, 2007), WileyVCH Verlag GmbH [html] [abs]
 J Norrell, B Samuelsson and JE Socolar, Attractors in continuous and Boolean networks.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 76 no. 4 Pt 2
(October, 2007),
pp. 046122, ISSN 15393755 [17995075], [doi] [abs]
 CM Berger, JW Cain, JE Socolar and DJ Gauthier, Control of electrical alternans in simulations of paced myocardium using extended timedelay autosynchronization.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 76 no. 4 Pt 1
(October, 2007),
pp. 041917, ISSN 15393755 (Selected for Virtual Journal of Biological Physics Research.) [17995036], [doi] [abs]
 A Shreim, P Grassberger, W Nadler, B Samuelsson, JE Socolar and M Paczuski, Network analysis of the state space of discrete dynamical systems.,
Phys Rev Lett, vol. 98 no. 19
(May, 2007),
pp. 198701, ISSN 00319007 [17677672], [doi] [abs]
 JES Socolar, Erratum: The hexagonal parquet tiling, kisohedral monotiles with arbitrarily large k (The Mathematical Intelligencer 29:2 (3338)),
Mathematical Intelligencer, vol. 29 no. 4
(2007),
pp. 6, ISSN 03436993 [doi]
 JES Socolar, The hexagonal parquet tiling kisohedral monotiles with arbitrarily large k,
Mathematical Intelligencer, vol. 29 no. 2
(2007),
pp. 3338, ISSN 03436993 [pdf], [doi] [abs] [author's comments]
 DV Foster, SA Kauffman and JE Socolar, Network growth models and genetic regulatory networks.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 73 no. 3 Pt 1
(2006),
pp. 031912, ISSN 15393755 [16605563], [doi] [abs]
 J.E.S. Socolar, Nonlinear Dynamical Systems,
in Complex Systems Science and Biomedicine, edited by Deisboeck and Kresh
(February, 2006), Kluwer [author's comments]
 B Samuelsson and JES Socolar, Exhaustive percolation on random networks,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 74 no. 3
(2006),
pp. 031912, ISSN 15393755 [e036113], [doi] [abs]
 BP Tighe, JE Socolar, DG Schaeffer, WG Mitchener and ML Huber, Force distributions in a triangular lattice of rigid bars.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 72 no. 3 Pt 1
(September, 2005),
pp. 031306, ISSN 15393755 [16241425], [doi] [abs]
 S Dealy, S Kauffman and J Socolar, Modeling pathways of differentiation in genetic regulatory networks with Boolean networks,
Complexity, vol. 11 no. 1
(2005),
pp. 5260, ISSN 10762787 [doi] [abs]
 I Harrington and JES Socolar, Design and robustness of delayed feedback controllers for discrete systems,
Phys. Rev. E, vol. 69 no. 5 1
(2004),
pp. 56207, ISSN 15393755 [abs]
 I Harrington and JES Socolar, Design and robustness of delayed feedback controllers for discrete systems,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 69 no. 5 1
(2004),
pp. 05620710562078, ISSN 15393755 [abs]
 P HÃ¶vel and JE Socolar, Stability domains for timedelay feedback control with latency.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 68 no. 3 Pt 2
(2003),
pp. 036206, ISSN 15393755 [14524867], [doi] [abs]
 M Otto, JP Bouchaud, P Claudin and JE Socolar, Anisotropy in granular media: classical elasticity and directedforce chain network.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 67 no. 3 Pt 1
(March, 2003),
pp. 031302, ISSN 15393755 [12689059], [doi] [abs]
 JE Socolar and SA Kauffman, Scaling in ordered and critical random boolean networks.,
Phys Rev Lett, vol. 90 no. 6
(February, 2003),
pp. 068702, ISSN 00319007 [12633339], [doi] [abs]
 JES Socolar, Discrete models of force chain networks,
Discrete and Continuous Dynamical Systems  Series B, vol. 3 no. 4
(2003),
pp. 601618, ISSN 15313492 [0212162] [abs]
 O Beck, A Amann, E Schoell and JES Socolar, `Comparison of timedelayed feedback schemes for spatiotemporal control of chaos,
Phys. Rev. E, vol. 66 no. 1
(2002),
pp. 016213, ISSN 15393755 [doi] [abs]
 M Otto, JP Bouchaud, P Claudin and JES Socolar, Anisotropy in granular media: classical elasticity and directed force
chain network,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 67 no. 3 1
(November, 2002),
pp. 031302/1031302/24, ISSN 1063651X [0211015v2], [doi] [abs]
 JES Socolar, DG Schaeffer and P Claudin, Erratum: Directed force chain networks and stress response in static granular materials (The European Physical Journal E (2002) 7 (353370)),
European Physical Journal E, vol. 8 no. 4
(2002),
pp. 453
 JES Socolar, DG Schaeffer and P Claudin, Directed force chain networks and stress response in static granular materials,
European Physical Journal E, vol. 7 no. 4
(2002),
pp. 353370 [0201242] [abs]
 O Beck, A Amann, E SchÃ¶ll, JES Socolar and W Just, Comparison of timedelayed feedback schemes for spatiotemporal control of chaos in a reactiondiffusion system with global coupling,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 66 no. 1
(2002),
pp. 016213/1016213/6, ISSN 15393755 [doi] [abs]
 I Harrington and JE Socolar, Limitation on stabilizing plane waves via timedelay feedback.,
Phys Rev E Stat Nonlin Soft Matter Phys, vol. 64 no. 5 Pt 2
(November, 2001),
pp. 056206, ISSN 15393755 [11736053], [doi] [abs]
 J.E.S Socolar, Chaos,
in Encyclopedia of Physical Science and Technology, 3rd Edition, edited by R. Meyers
(2001), Academic Press (revision of article by R. Jensen.)
 JES Socolar, S Richards and WG Wilson, Evolution in a spatially structured population subject to rare epidemics,
Physical Review E  Statistical, Nonlinear, and Soft Matter Physics, vol. 63 no. 4 I
(2001),
pp. 419081419088 [abs]
 ME Bleich and JES Socolar, Delayed feedback control of a paced excitable oscillator,
International Journal of Bifurcation and Chaos in Applied Sciences and Engineering, vol. 10 no. 3
(2000),
pp. 603609 [abs]
 SA Richards, WG Wilson and JE Socolar, Selection for intermediate mortality and reproduction rates in a spatially structured population.,
Proc Biol Sci, vol. 266 no. 1436
(December, 1999),
pp. 23832388, ISSN 09628452 [10643082], [doi] [abs]
 MG Sexton, JE Socolar and DG Schaeffer, Force distribution in a scalar model for noncohesive granular material.,
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 60 no. 2 Pt B
(August, 1999),
pp. 19992008, ISSN 1063651X [11969992] [abs]
 DA Egolf and JES Socolar, Failure of linear control in noisy coupled map lattices,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 57 no. 5 SUPPL. A
(1998),
pp. 52715275 [abs]
 JES Socolar and DJ Gauthier, Analysis and comparison of multipledelay schemes for controlling unstable fixed points of discrete maps,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 57 no. 6
(1998),
pp. 65896595 [abs]
 DW Sukow, ME Bleich, DJ Gauthier and JE Socolar, Controlling chaos in a fast diode resonator using extended timedelay autosynchronization: Experimental observations and theoretical analysis.,
Chaos, vol. 7 no. 4
(1997),
pp. 560576 [12779682], [doi] [abs]
 JES Socolar, Average stresses and force fluctuations in noncohesive granular
materials,
arxiv, vol. 57
(October, 1997),
pp. 3204 [9710089v1], [doi] [abs]
 ME Bleich, D Hochheiser, JV Moloney and JES Socolar, Controlling extended systems with spatially filtered, timedelayed feedback,
Physical Review E  Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, vol. 55 no. 3 SUPPL. A
(1997),
pp. 21192126 [abs]
 DJ Gauthier and JES Socolar, Comment on Dynamic Control of Cardiac Alternans,
Physical Review Letters, vol. 79
(1997),
pp. 4938
 ME Bleich and JE Socolar, Controlling spatiotemporal dynamics with timedelay feedback.,
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 54 no. 1
(1996),
pp. R17R20, ISSN 1063651X [9965164]
 ME Bleich and JES Socolar, Stability of periodic orbits controlled by timedelay feedback,
Physics Letters, Section A: General, Atomic and Solid State Physics, vol. 210 no. 12
(1995),
pp. 8794 [abs]
 JE Socolar, DW Sukow and DJ Gauthier, Stabilizing unstable periodic orbits in fast dynamical systems.,
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 50 no. 4
(1994),
pp. 32453248, ISSN 1063651X [9962372]
 DJ Gauthier, DW Sukow, HM Concannon and JE Socolar, Stabilizing unstable periodic orbits in a fast diode resonator using continuous timedelay autosynchronization.,
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 50 no. 3
(1994),
pp. 23432346, ISSN 1063651X [9962244]
 G Grinstein, C Jayaprakash and JE Socolar, Scale invariance of nonconserved quantities in driven systems.,
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 48 no. 2
(1993),
pp. R643R646, ISSN 1063651X [9960763]
 JE Socolar, G Grinstein and C Jayaprakash, On selforganized criticality in nonconserving systems.,
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, vol. 47 no. 4
(1993),
pp. 23662376, ISSN 1063651X [9960267]
 J Krug, JE Socolar and G Grinstein, Surface fluctuations and criticality in a class of onedimensional sandpile models.,
Phys Rev A, vol. 46 no. 8
(October, 1992),
pp. R4479R4482, ISSN 10502947 [9908766]
 J Krug and JE Socolar, Comment on "Scalings of growing selforganized surfaces",
Phys Rev Lett, vol. 68 no. 5
(1992),
pp. 722 [10045973], [doi]
 JES Socolar, Theory of Packings of Identical Hard Disks Generated by Ballistic Deposition,
Europhys. Lett., vol. 18
(1992),
pp. 39
 J Krug, JES Socolar and G Grinstein, Surface Fluctuations and Criticality in a Class of 1D Sandpile Models,
Phys. Rev. A (RC), vol. 46 no. 8
(1992),
pp. 4479, ISSN 10502947 [9908766]
 J.E.S. Socolar, Growth Rules for Quasicrystals,
in Quasicrystals: The State of the Art, edited by D. DiVincenzo and P. Steinhardt
(1991), World Scientific, Singapore
 J.E.S. Socolar, The Alternation Condition and 2D Quasicrystals,
in Quasicrystals, Springer Series in SolidState Sciences, edited by T. Fujiwara and T. Ogawa, vol. 93
(1990), SpringerVerlag, Berlin
 JES Socolar, Weak matching rules for quasicrystals,
Communications in Mathematical Physics, vol. 129 no. 3
(1990),
pp. 599619, ISSN 00103616 [doi] [abs]
 JE Socolar, Simple octagonal and dodecagonal quasicrystals.,
Phys Rev B Condens Matter, vol. 39 no. 15
(1989),
pp. 1051910551, ISSN 01631829 [9947860]
 G Onoda, PJ Steinhardt, D DiVincenzo and JE Socolar, Onoda etal. reply.,
Phys Rev Lett, vol. 62 no. 10
(March, 1989),
pp. 1210 [10039608], [doi]
 J.E.S. Socolar, Locality Constraints and 2D Quasicrystals,
in Quasicrystals  Adriatico Anniversary Research Conference, edited by M.V. Jaric and S. Lundqvist
(1989), World Scientific, Singapore
 GY Onoda, PJ Steinhardt, DP DiVincenzo and JES Socolar, Reply to Comment on PRL,
Phys. Rev. Lett., vol. 62 no. 10
(1989),
pp. 1210 [10039608], [doi]
 GY Onoda, PJ Steinhardt, DP DiVincenzo and JE Socolar, Growing perfect quasicrystals.,
Phys Rev Lett, vol. 60 no. 25
(1988),
pp. 26532656 [10038414], [doi]
 JE Socolar and DC Wright, Explanation of peak shapes observed in diffraction from icosahedral quasicrystals.,
Phys Rev Lett, vol. 59 no. 2
(1987),
pp. 221224 [10035483], [doi]
 TC Lubensky, JE Socolar, PJ Steinhardt, PA Bancel and AP Heiney, Distortion and peak broadening in quasicrystal diffraction patterns.,
Phys Rev Lett, vol. 57 no. 12
(1986),
pp. 14401443 [10033450], [doi]
 JE Socolar, TC Lubensky and PJ Steinhardt, Phonons, phasons, and dislocations in quasicrystals.,
Phys Rev B Condens Matter, vol. 34 no. 5
(1986),
pp. 33453360, ISSN 01631829 [9940073]
 JE Socolar and PJ Steinhardt, Quasicrystals. II. Unitcell configurations.,
Phys Rev B Condens Matter, vol. 34 no. 2
(July, 1986),
pp. 617647, ISSN 01631829 [9939668]
 JES Socolar and PJ Steinhardt, Quasicrystals II: Unit Cell Structures,
Phys. Rev. B, vol. 34
(1986),
pp. 617647 [doi]
 JES Socolar, Phason Strain in Quasicrystals,
Journal de Physique, vol. C3
(1986),
pp. 217227
 JE Socolar, PJ Steinhardt and D Levine, Quasicrystals with arbitrary orientational symmetry., Rapid Communication,
Phys Rev B Condens Matter, vol. 32 no. 8
(1985),
pp. 55475550, ISSN 01631829 [9937798]
 E MELE and J SOCOLAR, NUMERICALINTEGRATION OF THE TIME EVOLUTION OPERATOR  EXCITEDSTATE DYNAMICS IN CONJUGATED MOLECULES, Quantum Chemistry Symposium,
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, vol. 18
(1984),
pp. 347358, ISSN 00207608 [Gateway.cgi]
 JP Gollub, EJ Romer and JE Socolar, Trajectory divergence for coupled relaxation oscillators: Measurements and models,
Journal of Statistical Physics, vol. 23 no. 3
(1980),
pp. 321333, ISSN 00224715 [doi] [abs]
Papers Submitted
 Y. Yang, L. Fu, C. Marcoux, J. E. S. Socolar, P. Charbonneau, B. B. Yellen, Martensitic transformations in binary colloidal monolayers,
PNAS
(October, 2014)
