Publications of Jolanta M. Miadlikowska    :chronological  alphabetical  combined  bibtex listing:

  Home Publications
Research Areas
 
Graduate Studies
 
Undergraduate
Studies
 
People
  Faculty
  Staff
  Graduate Students
Alumni

Resources
 
News & Events
 
About
 

Publications

search PubMed.

Papers Published

  1. U'Ren, JM; Oita, S; Lutzoni, F; Miadlikowska, J; Ball, B; Carbone, I; May, G; Zimmerman, NB; Valle, D; Trouet, V; Arnold, AE, Environmental drivers and cryptic biodiversity hotspots define endophytes in Earth's largest terrestrial biome., Current biology : CB, vol. 34 no. 5 (March, 2024), pp. 1148-1156.e7 [doi]  [abs].
  2. Magain, N; Miadlikowska, J; Goffinet, B; Goward, T; Pardo-De la Hoz, CJ; Jüriado, I; Simon, A; Mercado-Díaz, JA; Barlow, T; Moncada, B; Lücking, R; Spielmann, A; Canez, L; Wang, LS; Nelson, P; Wheeler, T; Lutzoni, F; Sérusiaux, E, High species richness in the lichen genus Peltigera (Ascomycota, Lecanoromycetes): 34 species in the dolichorhizoid and scabrosoid clades of section Polydactylon, including 24 new to science, Persoonia: Molecular Phylogeny and Evolution of Fungi, vol. 51 (December, 2023), pp. 1-88 [doi]  [abs].
  3. Miadlikowska, J; Magain, N; Medeiros, ID; Pardo-De La Hoz, CJ; Carbone, I; Lagreca, S; Barlow, T; Myllys, L; Schmull, M; Lutzoni, F, Towards a nomenclatural clarification of the Peltigera ponojensis/monticola clade including metagenomic sequencing of type material and the introduction of P. globulata Miadl. & Magain sp. nov., Lichenologist, vol. 55 no. 5 (September, 2023), pp. 315-324 [doi]  [abs].
  4. Pardo-De la Hoz, CJ; Magain, N; Piatkowski, B; Cornet, L; Dal Forno, M; Carbone, I; Miadlikowska, J; Lutzoni, F, Ancient Rapid Radiation Explains Most Conflicts Among Gene Trees and Well-Supported Phylogenomic Trees of Nostocalean Cyanobacteria., Systematic biology, vol. 72 no. 3 (June, 2023), pp. 694-712 [doi]  [abs].
  5. McMullin, RT; Miadlikowska, J, Two rare Peltigera species new to the Canadian Arctic, P. islandica and P. lyngei, Plant and Fungal Systematics, vol. 67 no. 1 (July, 2022), pp. 17-23 [doi]  [abs].
  6. Franco, MEE; Wisecaver, JH; Arnold, AE; Ju, Y-M; Slot, JC; Ahrendt, S; Moore, LP; Eastman, KE; Scott, K; Konkel, Z; Mondo, SJ; Kuo, A; Hayes, RD; Haridas, S; Andreopoulos, B; Riley, R; LaButti, K; Pangilinan, J; Lipzen, A; Amirebrahimi, M; Yan, J; Adam, C; Keymanesh, K; Ng, V; Louie, K; Northen, T; Drula, E; Henrissat, B; Hsieh, H-M; Youens-Clark, K; Lutzoni, F; Miadlikowska, J; Eastwood, DC; Hamelin, RC; Grigoriev, IV; U'Ren, JM, Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes., The New phytologist, vol. 233 no. 3 (February, 2022), pp. 1317-1330 [doi]  [abs].
  7. Pardo-De la Hoz, CJ; Medeiros, ID; Gibert, JP; Chagnon, P-L; Magain, N; Miadlikowska, J; Lutzoni, F, Phylogenetic structure of specialization: A new approach that integrates partner availability and phylogenetic diversity to quantify biotic specialization in ecological networks., Ecology and evolution, vol. 12 no. 3 (February, 2022), pp. e8649 [doi]  [abs].
  8. Crous, PW; Hernández-Restrepo, M; Schumacher, RK; Cowan, DA; Maggs-Kölling, G; Marais, E; Wingfield, MJ; Yilmaz, N; Adan, OCG; Akulov, A; Duarte, EÁ; Berraf-Tebbal, A; Bulgakov, TS; Carnegie, AJ; de Beer, ZW; Decock, C; Dijksterhuis, J; Duong, TA; Eichmeier, A; Hien, LT; Houbraken, JAMP; Khanh, TN; Liem, NV; Lombard, L; Lutzoni, FM; Miadlikowska, JM; Nel, WJ; Pascoe, IG; Roets, F; Roux, J; Samson, RA; Shen, M; Spetik, M; Thangavel, R; Thanh, HM; Thao, LD; van Nieuwenhuijzen, EJ; Zhang, JQ; Zhang, Y; Zhao, LL; Groenewald, JZ, New and Interesting Fungi. 4., Fungal systematics and evolution, vol. 7 (June, 2021), pp. 255-343 [doi]  [abs].
  9. Oita, S; Ibáñez, A; Lutzoni, F; Miadlikowska, J; Geml, J; Lewis, LA; Hom, EFY; Carbone, I; U'Ren, JM; Arnold, AE, Climate and seasonality drive the richness and composition of tropical fungal endophytes at a landscape scale., Communications biology, vol. 4 no. 1 (March, 2021), pp. 313 [doi]  [abs].
  10. Stone, DF; Mccune, B; Pardo-De La Hoz, CJ; Magain, N; Miadlikowska, J, Sinuicella denisonii, a new genus and species in the Peltigeraceae from western North America, Lichenologist, vol. 53 no. 2 (March, 2021), pp. 185-192 [doi]  [abs].
  11. Medeiros, ID; Mazur, E; Miadlikowska, J; Flakus, A; Rodriguez-Flakus, P; Pardo-De la Hoz, CJ; Cieślak, E; Śliwa, L; Lutzoni, F, Turnover of Lecanoroid Mycobionts and Their Trebouxia Photobionts Along an Elevation Gradient in Bolivia Highlights the Role of Environment in Structuring the Lichen Symbiosis., Frontiers in microbiology, vol. 12 (January, 2021), pp. 774839 [doi]  [abs].
  12. McCune, B; Arup, U; Breuss, O; Di Meglio, E; Di Meglio, J; Esslinger, TL; Miadlikowska, J; Miller, AE; Rosentreter, R; Schultz, M; Sheard, J; Tønsberg, T; Walton, J, Biodiversity and ecology of lichens of Kenai Fjords National Park, Alaska, Plant and Fungal Systematics, vol. 65 no. 2 (December, 2020), pp. 586-619 [doi]  [abs].
  13. Miadlikowska, J; Magain, N; Buck, WR; Castillo, RV; Barlow, GT; Pardo-De la Hoz, CJ; LaGreca, S; Lutzoni, F, Peltigera hydrophila (Lecanoromycetes, Ascomycota), a new semi-aquatic cyanolichen species from Chile, Plant and Fungal Systematics, vol. 65 no. 1 (June, 2020), pp. 210-218 [doi]  [abs].
  14. Magain, N; Goffinet, B; Simon, A; Seelan, JSS; Medeiros, ID; Lutzoni, F; Miadlikowska, J, Peltigera serusiauxii (Lecanoromycetes, Ascomycota), a new species from Papua New Guinea and Malaysia, Plant and Fungal Systematics, vol. 65 no. 1 (June, 2020), pp. 139-146 [doi]  [abs].
  15. Magain, N; Spribille, T; Dimeglio, J; Nelson, PR; Miadlikowska, J; Sérusiaux, E, Phylogenetic evidence for an expanded circumscription of Gabura (Arctomiaceae), Lichenologist, vol. 52 no. 1 (January, 2020), pp. 3-15 [doi]  [abs].
  16. Flakus, A; Etayo, J; Miadlikowska, J; Lutzoni, F; Kukwa, M; Matura, N; Rodriguez-Flakus, P, Biodiversity assessment of ascomycetes inhabiting Lobariella lichens in Andean cloud forests led to one new family, three new genera and 13 new species of lichenicolous fungi, Plant and Fungal Systematics, vol. 64 no. 2 (December, 2019), pp. 283-344 [doi]  [abs].
  17. U'Ren, JM; Lutzoni, F; Miadlikowska, J; Zimmerman, NB; Carbone, I; May, G; Arnold, AE, Host availability drives distributions of fungal endophytes in the imperilled boreal realm., Nature ecology & evolution, vol. 3 no. 10 (October, 2019), pp. 1430-1437 [doi]  [abs].
  18. Chagnon, PL; Magain, N; Miadlikowska, J; Lutzoni, F, Species diversification and phylogenetically constrained symbiont switching generated high modularity in the lichen genus Peltigera, Journal of Ecology, vol. 107 no. 4 (July, 2019), pp. 1645-1661 [doi]  [abs].
  19. Carbone, I; White, JB; Miadlikowska, J; Arnold, AE; Miller, MA; Magain, N; U'Ren, JM; Lutzoni, F, T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees., Microbiology resource announcements, vol. 8 no. 29 (July, 2019), pp. e00328-e00319 [doi]  [abs].
  20. Lutzoni, F; Nowak, MD; Alfaro, ME; Reeb, V; Miadlikowska, J; Krug, M; Arnold, AE; Lewis, LA; Swofford, DL; Hibbett, D; Hilu, K; James, TY; Quandt, D; Magallón, S, Contemporaneous radiations of fungi and plants linked to symbiosis., Nature communications, vol. 9 no. 1 (December, 2018), pp. 5451 [doi]  [abs].
  21. Miadlikowska, J; Magain, N; Pardo-De La Hoz, CJ; Niu, D; Goward, T; Sérusiaux, E; Lutzoni, F, Species in section Peltidea (aphthosa group) of the genus Peltigera remain cryptic after molecular phylogenetic revision, Plant and Fungal Systematics, vol. 63 no. 2 (December, 2018), pp. 45-64 [doi]  [abs].
  22. Hoz, CJPDL; Magain, N; Lutzoni, F; Goward, T; Restrepo, S; Miadlikowska, J, Contrasting Symbiotic Patterns in Two Closely Related Lineages of Trimembered Lichens of the Genus Peltigera, Frontiers in Microbiology, vol. 9 no. NOV (November, 2018), FRONTIERS MEDIA SA [doi]  [abs].
  23. Magain, N; Truong, C; Goward, T; Niu, D; Goffinet, B; Sérusiaux, E; Vitikainen, O; Lutzoni, F; Miadlikowska, J, Species delimitation at a global scale reveals high species richness with complex biogeography and patterns of symbiont association in peltigera section peltigera (Lichenized ascomycota: Lecanoromycetes), Taxon, vol. 67 no. 5 (October, 2018), pp. 836-870, WILEY [doi]  [abs].
  24. Lu, J; Magain, N; Miadlikowska, J; Coyle, JR; Truong, C; Lutzoni, F, Bioclimatic factors at an intrabiome scale are more limiting than cyanobiont availability for the lichen-forming genus Peltigera., American journal of botany, vol. 105 no. 7 (July, 2018), pp. 1198-1211 [doi]  [abs].
  25. Chagnon, PL; Magain, N; Miadlikowska, J; Lutzoni, F, Strong specificity and network modularity at a very fine phylogenetic scale in the lichen genus Peltigera., Oecologia, vol. 187 no. 3 (July, 2018), pp. 767-782, Springer Nature [doi]  [abs].
  26. McCune, B; Arup, U; Breuss, O; Di Meglio, ED; Di Meglio, JD; Esslinger, TL; Magain, N; Miadlikowska, J; Miller, AE; Muggia, L; Nelson, PR; Rosentreter, R; Schultz, M; Sheard, JW; Tønsberg, T; Walton, J, Biodiversity and ecology of lichens of Katmai and Lake Clark National Parks and Preserves, Alaska, Mycosphere, vol. 9 no. 4 (January, 2018), pp. 859-930 [doi]  [abs].
  27. Magain, N; Miadlikowska, J; Mueller, O; Gajdeczka, M; Truong, C; Salamov, AA; Dubchak, I; Grigoriev, IV; Goffinet, B; Sérusiaux, E; Lutzoni, F, Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon., Molecular phylogenetics and evolution, vol. 117 (December, 2017), pp. 10-29 [doi]  [abs].
  28. Heiđmarsson, S; Gueidan, C; Miadlikowska, J; Lutzoni, F, Multi-locus phylogeny supports the placement of endocarpon pulvinatum within staurothele s. Str. (lichenised ascomycetes, eurotiomycetes, verrucariaceae), Phytotaxa, vol. 306 no. 1 (May, 2017), pp. 37-48, MAGNOLIA PRESS [available here], [doi]  [abs].
  29. Carbone, I; White, JB; Miadlikowska, J; Arnold, AE; Miller, MA; Kauff, F; U'Ren, JM; May, G; Lutzoni, F, T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life., Bioinformatics (Oxford, England), vol. 33 no. 8 (April, 2017), pp. 1160-1168 [available here], [doi]  [abs].
  30. Darnajoux, R; Zhang, X; McRose, DL; Miadlikowska, J; Lutzoni, F; Kraepiel, AML; Bellenger, J-P, Biological nitrogen fixation by alternative nitrogenases in boreal cyanolichens: importance of molybdenum availability and implications for current biological nitrogen fixation estimates., The New phytologist, vol. 213 no. 2 (January, 2017), pp. 680-689 [available here], [doi]  [abs].
  31. Magain, N; Miadlikowska, J; Goffinet, B; Sérusiaux, E; Lutzoni, F, Macroevolution of Specificity in Cyanolichens of the Genus Peltigera Section Polydactylon (Lecanoromycetes, Ascomycota)., Systematic biology, vol. 66 no. 1 (January, 2017), pp. 74-99 [available here], [doi]  [abs].
  32. Gryganskyi, A. P., Humber, R. A., Miadlikowska, J., Smith, M., Wu, S., Rubinstein, N., Voigt, K., Walter, G., Anihchenko, I. M., Vilgalys, R., Molecular Phylogeny of Entomophthoralean Fungi., Molecular Phylogenetics and Evolution, vol. 65 (2017), pp. 682-694 [available here] .
  33. Miadlikowska, J. and Lutzoni, F., Phylogenetic classification of peltigeralean fungi (Peltigerales, Ascomycota) based on ribosomal RNA small and large subunits., American Journal of Botany, vol. 91 (2017), pp. 449–464 [available here] .
  34. Hestmark, G; Lutzoni, F; Miadlikowska, J, Photobiont associations in co-occurring umbilicate lichens with contrasting modes of reproduction in coastal Norway, Lichenologist, vol. 48 no. 5 (September, 2016), pp. 545-557, Cambridge University Press (CUP) [available here], [doi]  [abs].
  35. van Nieuwenhuijzen, EJ; Miadlikowska, JM; Houbraken, JAMP; Adan, OCG; Lutzoni, FM; Samson, RA, Wood staining fungi revealed taxonomic novelties in Pezizomycotina: New order Superstratomycetales and new species Cyanodermella oleoligni., Studies in mycology, vol. 85 (September, 2016), pp. 107-124 [available here], [doi]  [abs].
  36. Manoharan-Basil, SS; Miadlikowska, J; Goward, T; Andrésson, ÓS; Miao, VPW, Peltigera islandica, a new cyanolichen species in section Peltigera ('P. canina group'), Lichenologist, vol. 48 no. 5 (September, 2016), pp. 451-467, Cambridge University Press (CUP) [available here], [doi]  [abs].
  37. Chagnon, P-L; U'Ren, JM; Miadlikowska, J; Lutzoni, F; Arnold, AE, Erratum to: Interaction type influences ecological network structure more than local abiotic conditions: evidence from endophytic and endolichenic fungi at a continental scale., Oecologia, vol. 181 no. 2 (June, 2016), pp. 633, Springer Nature [doi] .
  38. U'Ren, JM; Miadlikowska, J; Zimmerman, NB; Lutzoni, F; Stajich, JE; Arnold, AE, Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota)., Molecular phylogenetics and evolution, vol. 98 (May, 2016), pp. 210-232 [available here], [doi]  [abs].
  39. Chagnon, P-L; U'Ren, JM; Miadlikowska, J; Lutzoni, F; Arnold, AE, Interaction type influences ecological network structure more than local abiotic conditions: evidence from endophytic and endolichenic fungi at a continental scale., Oecologia, vol. 180 no. 1 (January, 2016), pp. 181-191 [available here], [doi]  [abs].
  40. Magain, N., Sérusiaux, E., Zhurbenko, M. P., Lutzoni, F., Miadlikowska, J., Disentangling the Peltigera polydactylon species complex by recognizing two new taxa, P. polydactylon subsp. udeghe and P. seneca., Herzogia, vol. 29 (2016), pp. 514-528 [available here] .
  41. Divakar, PK; Crespo, A; Wedin, M; Leavitt, SD; Hawksworth, DL; Myllys, L; McCune, B; Randlane, T; Bjerke, JW; Ohmura, Y; Schmitt, I; Boluda, CG; Alors, D; Roca-Valiente, B; Del-Prado, R; Ruibal, C; Buaruang, K; Núñez-Zapata, J; Amo de Paz, G; Rico, VJ; Molina, MC; Elix, JA; Esslinger, TL; Tronstad, IKK; Lindgren, H; Ertz, D; Gueidan, C; Saag, L; Mark, K; Singh, G; Dal Grande, F; Parnmen, S; Beck, A; Benatti, MN; Blanchon, D; Candan, M; Clerc, P; Goward, T; Grube, M; Hodkinson, BP; Hur, J-S; Kantvilas, G; Kirika, PM; Lendemer, J; Mattsson, J-E; Messuti, MI; Miadlikowska, J; Nelsen, M; Ohlson, JI; Pérez-Ortega, S; Saag, A; Sipman, HJM; Sohrabi, M; Thell, A; Thor, G; Truong, C; Yahr, R; Upreti, DK; Cubas, P; Lumbsch, HT, Evolution of complex symbiotic relationships in a morphologically derived family of lichen-forming fungi., The New phytologist, vol. 208 no. 4 (December, 2015), pp. 1217-1226 [available here], [doi]  [abs].
  42. Darnajoux, R; Lutzoni, F; Miadlikowska, J; Bellenger, J-P, Determination of elemental baseline using peltigeralean lichens from Northeastern Canada (Québec): Initial data collection for long term monitoring of the impact of global climate change on boreal and subarctic area in Canada., The Science of the total environment, vol. 533 (November, 2015), pp. 1-7 [available here], [doi]  [abs].
  43. Chen, K-H; Miadlikowska, J; Molnár, K; Arnold, AE; U'Ren, JM; Gaya, E; Gueidan, C; Lutzoni, F, Phylogenetic analyses of eurotiomycetous endophytes reveal their close affinities to Chaetothyriales, Eurotiales, and a new order - Phaeomoniellales., Molecular phylogenetics and evolution, vol. 85 (April, 2015), pp. 117-130 [available here], [doi]  [abs].
  44. Gueidan, C; Hill, DJ; Miadlikowska, J; Lutzoni, F, Pezizomycotina: Lecanoromycetes (January, 2015), pp. 89-120, Springer Berlin Heidelberg [doi]  [abs].
  45. Gueidan, C., Hill, D. J., Miadlikowska, J., Lutzoni, F., Chapter 4. Pezizomycotina:  Lecanoromycetes., in The Mycota, Systematics and Evolution , edited by D. J. McLaughlin and J. W. Spatafora, vol. VIIB (2015), pp. 89–120 , Springer Verlag, .
  46. Miadlikowska, J; Kauff, F; Högnabba, F; Oliver, JC; Molnár, K; Fraker, E; Gaya, E; Hafellner, J; Hofstetter, V; Gueidan, C; Otálora, MAG; Hodkinson, B; Kukwa, M; Lücking, R; Björk, C; Sipman, HJM; Burgaz, AR; Thell, A; Passo, A; Myllys, L; Goward, T; Fernández-Brime, S; Hestmark, G; Lendemer, J; Lumbsch, HT; Schmull, M; Schoch, CL; Sérusiaux, E; Maddison, DR; Arnold, AE; Lutzoni, F; Stenroos, S, A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families., Molecular phylogenetics and evolution, vol. 79 (October, 2014), pp. 132-168 [doi]  [abs].
  47. U'Ren, JM; Riddle, JM; Monacell, JT; Carbone, I; Miadlikowska, J; Arnold, AE, Tissue storage and primer selection influence pyrosequencing-based inferences of diversity and community composition of endolichenic and endophytic fungi., Molecular ecology resources, vol. 14 no. 5 (September, 2014), pp. 1032-1048 [available here], [doi]  [abs].
  48. Miadlikowska, J; Richardson, D; Magain, N; Ball, B; Anderson, F; Cameron, R; Lendemer, J; Truong, C; Lutzoni, F, Phylogenetic placement, species delimitation, and cyanobiont identity of endangered aquatic Peltigera species (lichen-forming Ascomycota, Lecanoromycetes)., American journal of botany, vol. 101 no. 7 (July, 2014), pp. 1141-1156 [available here], [doi]  [abs].
  49. Darnajoux, R; Constantin, J; Miadlikowska, J; Lutzoni, F; Bellenger, J-P, Is vanadium a biometal for boreal cyanolichens?, The New phytologist, vol. 202 no. 3 (May, 2014), pp. 765-771 [available here], [doi]  [abs].
  50. O'Brien, HE; Miadlikowska, J; Lutzoni, F, Assessing population structure and host specialization in lichenized cyanobacteria., The New phytologist, vol. 198 no. 2 (April, 2013), pp. 557-566 [available here], [doi]  [abs].
  51. Gazis, R; Miadlikowska, J; Lutzoni, F; Arnold, AE; Chaverri, P, Culture-based study of endophytes associated with rubber trees in Peru reveals a new class of Pezizomycotina: Xylonomycetes., Molecular phylogenetics and evolution, vol. 65 no. 1 (October, 2012), pp. 294-304 [available here], [doi]  [abs].
  52. Liwa, L; Miadlikowska, J; Redelings, BD; Molnar, K; Lutzoni, F, Are widespread morphospecies from the Lecanora dispersa group (lichen-forming Ascomycota) monophyletic?, Bryologist, vol. 115 no. 2 (June, 2012), pp. 265-277, American Bryological and Lichenological Society [doi]  [abs].
  53. U'Ren, JM; Lutzoni, F; Miadlikowska, J; Laetsch, AD; Arnold, AE, Host and geographic structure of endophytic and endolichenic fungi at a continental scale., American journal of botany, vol. 99 no. 5 (May, 2012), pp. 898-914 [available here], [doi]  [abs].
  54. Schmull, M; Miadlikowska, J; Pelzer, M; Stocker-Wörgötter, E; Hofstetter, V; Fraker, E; Hodkinson, BP; Reeb, V; Kukwa, M; Lumbsch, HT; Kauff, F; Lutzoni, F, Phylogenetic affiliations of members of the heterogeneous lichen-forming fungi of the genus Lecidea sensu Zahlbruckner (Lecanoromycetes, Ascomycota)., Mycologia, vol. 103 no. 5 (September, 2011), pp. 983-1003 [available here], [doi]  [abs].
  55. McCune, B; Schoch, C; Root, HT; Kageyama, SA; Miadlikowska, J, Geographic, climatic, and chemical differentiation in the Hypogymnia imshaugii species complex (Lecanoromycetes, Parmeliaceae) in North America, Bryologist, vol. 114 no. 3 (September, 2011), pp. 526-544, American Bryological and Lichenological Society [available here], [doi]  [abs].
  56. Miadlikowska, J; Schoch, CL; Kageyama, SA; Molnar, K; Lutzoni, F; McCune, B, Hypogymnia phylogeny, including Cavernularia, reveals biogeographic structure, Bryologist, vol. 114 no. 2 (June, 2011), pp. 392-400, American Bryological and Lichenological Society [available here], [doi]  [abs].
  57. Hestmark, G; Miadlikowska, J; Kauff, F; Fraker, E; Molnar, K; Lutzoni, F, Single origin and subsequent diversification of central Andean endemic Umbilicaria species., Mycologia, vol. 103 no. 1 (January, 2011), pp. 45-56 [available here], [doi]  [abs].
  58. Sliwa, L., Miadlikowska, J., Redelings, B. D., Molnar, K., Lutzoni, F., Are morphospecies from the Lecanora dispersa group (lichenized Lecanoromycetes, Pezizomycotina) monophyletic?, The Bryologist, vol. 115 (2011), pp. 265–277 [available here] .
  59. Crespo, A; Kauff, F; Divakar, PK; del Prado, R; Pérez-Ortega, S; de Paz, GA; Ferencova, Z; Blanco, O; Roca-Valiente, B; Núñez-Zapata, J; Cubas, P; Argüello, A; Elix, JA; Esslinger, TL; Hawksworth, DL; Millanes, A; Molina, MC; Wedin, M; Ahti, T; Aptroot, A; Barreno, E; Bungartz, F; Calvelo, S; Candan, M; Cole, M; Ertz, D; Goffinet, B; Lindblom, L; Lücking, R; Lutzoni, F; Mattsson, JE; Messuti, MI; Miadlikowska, J; Piercey-Normore, M; Rico, VJ; Sipman, HJM; Schmitt, I; Spribille, T; Thell, A; Thor, G; Upreti, DK; Thorsten Lumbsch, H, Phylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence, Taxon, vol. 59 no. 6 (December, 2010), pp. 1735-1753 [available here], [doi]  [abs].
  60. U'Ren, J; Lutzoni, F; Miadlikowska, J; Arnold, AE, Community analysis reveals close affinities between endophytic and endolichenic fungi in mosses and lichens, Microbial Ecology, vol. 60 no. 2 (2010), pp. 340-353 [available here], [doi]  [abs].
  61. O'Brien, HE; Miadlikowska, J; Lutzoni, F, Assessing reproductive isolation in highly diverse communities of the lichen-forming fungal genus peltigera., Evolution; international journal of organic evolution, vol. 63 no. 8 (August, 2009), pp. 2076-2086 [available here], [doi]  [abs].
  62. Lutzoni, F; Miadlikowska, J, Lichens., Current biology : CB, vol. 19 no. 13 (July, 2009), pp. R502-R503 [available here], [doi] .
  63. Arnold, AE; Miadlikowska, J; Higgins, KL; Sarvate, SD; Gugger, P; Way, A; Hofstetter, V; Kauff, F; Lutzoni, F, A phylogenetic estimation of trophic transition networks for ascomycetous fungi: are lichens cradles of symbiotrophic fungal diversification?, Systematic biology, vol. 58 no. 3 (June, 2009), pp. 283-297 [available here], [doi]  [abs].
  64. Schoch, CL; Sung, G-H; López-Giráldez, F; Townsend, JP; Miadlikowska, J; Hofstetter, V; Robbertse, B; Matheny, PB; Kauff, F; Wang, Z; Gueidan, C; Andrie, RM; Trippe, K; Ciufetti, LM; Wynns, A; Fraker, E; Hodkinson, BP; Bonito, G; Groenewald, JZ; Arzanlou, M; de Hoog, GS; Crous, PW; Hewitt, D; Pfister, DH; Peterson, K; Gryzenhout, M; Wingfield, MJ; Aptroot, A; Suh, S-O; Blackwell, M; Hillis, DM; Griffith, GW; Castlebury, LA; Rossman, AY; Lumbsch, HT; Lücking, R; Büdel, B; Rauhut, A; Diederich, P; Ertz, D; Geiser, DM; Hosaka, K; Inderbitzin, P; Kohlmeyer, J; Volkmann-Kohlmeyer, B; Mostert, L; O'Donnell, K; Sipman, H; Rogers, JD; Shoemaker, RA; Sugiyama, J; Summerbell, RC; Untereiner, W; Johnston, PR; Stenroos, S; Zuccaro, A; Dyer, PS; Crittenden, PD; Cole, MS; Hansen, K; Trappe, JM; Yahr, R; Lutzoni, F; Spatafora, JW, The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits., Systematic biology, vol. 58 no. 2 (April, 2009), pp. 224-239 [available here], [doi]  [abs].
  65. Ertz, D; Miadlikowska, J; Lutzoni, F; Dessein, S; Raspé, O; Vigneron, N; Hofstetter, V; Diederich, P, Towards a new classification of the Arthoniales (Ascomycota) based on a three-gene phylogeny focussing on the genus Opegrapha., Mycological research., vol. 113 no. Pt 1 (January, 2009), pp. 141-152 [available here], [doi]  [abs].
  66. Sérusiaux, E., Goffinet, B., Miadlikowska, J., Vitikainen, O., Taxonomy, phylogeny, and biogeography of the lichen genus Peltigera in Papua New Guinea, Fungal Diversity, vol. 38 (2009), pp. 185-224 [available here] .
  67. Amtoft, A; Lutzoni, F; Miadlikowska, J, Dermatocarpon (Verrucariaceae) in the Ozark Highlands, North America, Bryologist, vol. 111 no. 1 (March, 2008), pp. 1-40, American Bryological and Lichenological Society [available here], [doi]  [abs].
  68. Hofstetter, V; Miadlikowska, J; Kauff, F; Lutzoni, F, Phylogenetic comparison of protein-coding versus ribosomal RNA-coding sequence data: a case study of the Lecanoromycetes (Ascomycota)., Molecular phylogenetics and evolution, vol. 44 no. 1 (July, 2007), pp. 412-426 [available here], [doi]  [abs].
  69. Higgins, KL; Arnold, AE; Miadlikowska, J; Sarvate, SD; Lutzoni, F, Phylogenetic relationships, host affinity, and geographic structure of boreal and arctic endophytes from three major plant lineages., Molecular phylogenetics and evolution, vol. 42 no. 2 (February, 2007), pp. 543-555 [available here], [doi]  [abs].
  70. Hibbett, DS; Binder, M; Bischoff, JF; Blackwell, M; Cannon, PF; Eriksson, O; Huhndorf, S; James, T; Kirk, PM; Lücking, R; Lumbsch, T; Lutzoni, F; Matheny, PB; McLaughlin, DJ; Powell, MJ; Redhead, S; Schoch, CL; Spatafora, JW; Stalpers, JA; Vilgalys, R; Aime, MC; Aptroot, A; Bauer, R; Begerow, D; Benny, GL; Castlebury, LA; Crous, PW; Dai, YC; Gams, W; Geiser, DM; Griffith, GW; Gueidan, C; Hawksworth, DL; Hestmark, G; Hosaka, K; Humber, RA; Hyde, K; Koljalg, U; Kurtzman, CP; Larsson, KH; Lichtward, R; Longcore, J; Miadlikowska, J; Miller, A; Monclavo, JM; Mozley Standridge, S; Oberwinkler, F; Parmasto, E; Reeb, V; Rogers, JD; Roux, C; Ryvarden, L; Sampaio, JP; Schuessler, A; Sugiyama, J; Thorn, RG; Tibell, L; Untereiner, WA; Walker, C; Wang, Z; Weir, A; Weiss, M; White, M; Winka, K; Yao, YJ; Zhang, N, A higher-level phylogenetic classification of the Fungi, Mycological Research, vol. 111 no. Pt 5 (2007), pp. 509-547 [available here], [doi]  [abs].
  71. Miadlikowska, J; Kauff, F; Hofstetter, V; Fraker, E; Grube, M; Hafellner, J; Reeb, V; Hodkinson, BP; Kukwa, M; Lücking, R; Hestmark, G; Otalora, MG; Rauhut, A; Büdel, B; Scheidegger, C; Timdal, E; Stenroos, S; Brodo, I; Perlmutter, GB; Ertz, D; Diederich, P; Lendemer, JC; May, P; Schoch, CL; Arnold, AE; Gueidan, C; Tripp, E; Yahr, R; Robertson, C; Lutzoni, F, New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA- and two protein-coding genes., Mycologia, vol. 98 no. 6 (November, 2006), pp. 1088-1103 [doi]  [abs].
  72. Geiser, DM; Gueidan, C; Miadlikowska, J; Lutzoni, F; Kauff, F; Hofstetter, V; Fraker, E; Schoch, CL; Tibell, L; Untereiner, WA; Aptroot, A, Eurotiomycetes: Eurotiomycetidae and Chaetothyriomycetidae., Mycologia, vol. 98 no. 6 (November, 2006), pp. 1053-1064 [available here], [doi]  [abs].
  73. Spatafora, JW; Sung, G-H; Johnson, D; Hesse, C; O'Rourke, B; Serdani, M; Spotts, R; Lutzoni, F; Hofstetter, V; Miadlikowska, J; Reeb, V; Gueidan, C; Fraker, E; Lumbsch, T; Lücking, R; Schmitt, I; Hosaka, K; Aptroot, A; Roux, C; Miller, AN; Geiser, DM; Hafellner, J; Hestmark, G; Arnold, AE; Büdel, B; Rauhut, A; Hewitt, D; Untereiner, WA; Cole, MS; Scheidegger, C; Schultz, M; Sipman, H; Schoch, CL, A five-gene phylogeny of Pezizomycotina., Mycologia, vol. 98 no. 6 (November, 2006), pp. 1018-1028 [available here], [doi]  [abs].
  74. James, TY; Kauff, F; Schoch, C; Matheny, PB; Hofstetter, V; Cox, CJ; Celio, G; Gueidan, C; Fraker, E; Miadlikowska, J; Lumbsch, T; Rauhut, A; Reeb, V; Arnold, AE; Amtoft, A; Stajich, JE; Hosaka, K; Sung, GH; Johnson, D; O’Rourke, B; Binder, M; Curtis, JM; Slot, JC; Wang, Z; Wilson, AW; Schüßler, A; Longcore, JE; O’Donnell, K; Mozley Standridge, S; Porter, D; Letcher, PM; Powell, MJ; Taylor, JW; White, MM; Griffith, GW; Davies, DR; Sugiyama, J; Rossman, AY; Rogers, JD; Pfister, DH; Hewitt, D; Hansen, K; Hambleton, S; Shoemaker, RA; Kohlmeyer, J; Volkmann Kohlmeyer, B; Spotts, RA; Serdani, M; Crous, PW; Hughes, KW; Matsuura, K; Langer, E; Langer, G; Untereiner, WA; Lücking, R; Büdel, B; Geiser, DM; Aptroot, A; Buck, WR; Cole, MS; Diederich, P; Printzen, C; Schmitt, I; Schultz, M; Yahr, R; Zavarzin, A; Hibbett, DH; Lutzoni, F; McLaughlin, DJ; Spatafora, JW; Vilgalys, R, Reconstructing the early evolution of the Fungi using a six-gene phylogeny, Nature, vol. 443 no. 7113 (2006), pp. 818-822 [available here], [doi]  [abs].
  75. O'Brien, HE; Miadlikowska, J; Lutzoni, F, Assessing host specialization in symbiotic cyanobacteria associated with four closely related species of the lichen fungus Peltigera, European Journal of Phycology, vol. 40 no. 4 (November, 2005), pp. 363-378, Informa UK Limited [available here], [doi]  [abs].
  76. Lutzoni, F; Kauff, F; Cox, CJ; McLaughlin, D; Celio, G; Dentinger, B; Padamsee, M; Hibbett, D; James, TY; Baloch, E; Grube, M; Reeb, V; Hofstetter, V; Schoch, C; Arnold, AE; Miadlikowska, J; Spatafora, J; Johnson, D; Hambleton, S; Crockett, M; Shoemaker, R; Sung, G-H; Lücking, R; Lumbsch, T; O'Donnell, K; Binder, M; Diederich, P; Ertz, D; Gueidan, C; Hansen, K; Harris, RC; Hosaka, K; Lim, Y-W; Matheny, B; Nishida, H; Pfister, D; Rogers, J; Rossman, A; Schmitt, I; Sipman, H; Stone, J; Sugiyama, J; Yahr, R; Vilgalys, R, Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits., American journal of botany, vol. 91 no. 10 (October, 2004), pp. 1446-1480 [available here], [doi]  [abs].
  77. Miadlikowska, J; Lutzoni, F, Phylogenetic classification of peltigeralean fungi (Peltigerales, Ascomycota) based on ribosomal RNA small and large subunits., American journal of botany, vol. 91 no. 3 (March, 2004), pp. 449-464 [doi]  [abs].
  78. Ertz, D; Diederich, P; Miadlikowska, J, The lichenicolous Opegrapha species (Roccellaceae, Ascomycota) with 3-septate ascospores on Pertusaria and Ochrolechia, Botanical Journal of the Linnean Society, vol. 144 no. 2 (February, 2004), pp. 235-241, Oxford University Press (OUP) [available here], [doi]  [abs].
  79. Miadlikowska, J; Lutzoni, F; Goward, T; Zoller, S; Posada, D, New approach to an old problem: Incorporating signal from gap-rich regions of ITS and rDNA large subunit into phylogenetic analyses to resolve the Peltigera canina species complex., Mycologia, vol. 95 no. 6 (November, 2003), pp. 1181-1203 [available here], [doi]  [abs].
  80. Ertz, D; Zhurbenko, M; Diederich, P; Miadlikowska, J, A new species of Plectocarpon (Lichenicolous Roccellaceae, Ascomycota) on Peltigera, Bryologist, vol. 106 no. 3 (January, 2003), pp. 465-467, American Bryological and Lichenological Society [doi]  [abs].
  81. McDonald, T; Miadlikowska, J; Lutzoni, F, The lichen genus Sticta in the Great Smoky Mountains: A phylogenetic study of morphological, chemical, and molecular data, Bryologist, vol. 106 no. 1 (January, 2003), pp. 61-79, American Bryological and Lichenological Society [available here], [doi]  [abs].
  82. Goffinet, B; Miadlikowska, J; Goward, T, Phylogenetic inferences based on nrDNA sequences support five morphospecies within the Peltigera didactyla complex (Lichenized Ascomycota), Bryologist, vol. 106 no. 3 (January, 2003), pp. 349-364, American Bryological and Lichenological Society [doi]  [abs].
  83. Goffinet, B., Miadlikowska, J., Goward, T., Phylogenetic inferences support five morphospecies within the morphologically, chemically, and ecologically diverse Peltigera didactyla species complex (lichenized Ascomycota)., The Bryologist, vol. 106 (2003), pp. 349-364 [available here] .
  84. Ertz, D., Zhurbenko, M., Diederich, P., Miadlikowska, J., A new species of Plectocarpon on Peltigera (lichenicolous Roccellaceae, Ascomycota)., The Lichenologist, vol. 106 (2003), pp. 465-467 [available here] .
  85. Miadlikowska, J; McCune, B; Lutzoni, F, Pseudocyphellaria perpetua, a new lichen from western North America, Bryologist, vol. 105 no. 1 (January, 2002), pp. 1-10, American Bryological and Lichenological Society [available here], [doi]  [abs].
  86. Miadlikowska, J; Lutzoni, F, Phylogenetic revision of the genus Peltigera (lichen-forming Ascomycota) based on morphological, chemical, and large subunit nuclear ribosomal DNA data, International Journal of Plant Sciences, vol. 161 no. 6 (January, 2000), pp. 925-958, University of Chicago Press [available here], [doi]  [abs].
  87. Goffinet, B; Miadlikowska, J, Peltigera phyllidiosa (Peltigeraceae, ascomycotina), a new species from the Southern Appalachians corroborated by its sequences, Lichenologist, vol. 31 no. 3 (January, 1999), pp. 247-256, Cambridge University Press (CUP) [available here], [doi]  [abs].
  88. Hawksworth, DL; Miadlikowska, J, New species of lichenicolous fungi occurring on Peltigera in Ecuador and Europe, Mycological Research, vol. 101 no. 9 (January, 1997), pp. 1127-1134, Elsevier BV [doi]  [abs].
  89. Hawksworth, DL; Mia̧dlikowska, J, Vagnia, a remarkable coelomycete producing a black columnar cirrus on Peltigera in Poland, Lichenologist, vol. 29 no. 1 (January, 1997), pp. 45-49, Cambridge University Press (CUP) [doi]  [abs].
  90. Hawksworth, D. L. and Miadlikowska, J., Vagnia, a remarkable celeomycete producing black columnar cirrus on Peltigera in Poland., The Lichenologist, vol. 29 (1997), pp. 45-49 .