Research Interests for John Harer
Research Interests: Computational Topology, Computational Biology, Algorithms
Professor Harer's primary research is in the use of geometric, combinatorial and computational techniques to study a variety of problems in data analysis, shape recognition, image segmentation, tracking, brain imaging, biological networks and gene expression. - Keywords:
- Algorithms, Automatic Data Processing, Biomass, Chromosome Mapping, Crosses, Genetic, Genome, Plant, Genotype, Image Processing, Computer-Assisted, Imaging, Three-Dimensional, Inbreeding, Models, Biological, Multivariate Analysis, Oryza sativa, Phenotype, Plant Roots, Principal Component Analysis, Quantitative Trait Loci, Quantitative Trait, Heritable, Recombination, Genetic, Reproducibility of Results, Software, Workflow
- Current projects:
- Biochronicity
- Computational Topology
- Statistical Topology
- Self-Healing Networks
- Network Inference
- Geometric Image Analysis
- Areas of Interest:
- Computational Biology
Computational Topology Dynamics on Networks Algorithms
- Recent Publications
- Motta, FC; McGoff, K; Moseley, RC; Cho, C-Y; Kelliher, CM; Smith, LM; Ortiz, MS; Leman, AR; Campione, SA; Devos, N; Chaorattanakawee, S; Uthaimongkol, N; Kuntawunginn, W; Thongpiam, C; Thamnurak, C; Arsanok, M; Wojnarski, M; Vanchayangkul, P; Boonyalai, N; Smith, PL; Spring, MD; Jongsakul, K; Chuang, I; Harer, J; Haase, SB, The parasite intraerythrocytic cycle and human circadian cycle are coupled during malaria infection.,
Proceedings of the National Academy of Sciences of the United States of America, vol. 120 no. 24
(June, 2023),
pp. e2216522120 [doi] [abs]
- Motta, FC; McGoff, KA; Deckard, A; Wolfe, CR; Bonsignori, M; Moody, MA; Cavanaugh, K; Denny, TN; Harer, J; Haase, SB, Assessment of Simulated Surveillance Testing and Quarantine in a SARS-CoV-2-Vaccinated Population of Students on a University Campus.,
Jama Health Forum, vol. 2 no. 10
(October, 2021),
pp. e213035 [doi] [abs]
- Smith, AD; Bendich, P; Harer, J, PERSISTENT OBSTRUCTION THEORY FOR A MODEL CATEGORY OF MEASURES WITH APPLICATIONS TO DATA MERGING,
Transactions of the American Mathematical Society, Series B, vol. 8 no. 1
(February, 2021),
pp. 1-38 [doi] [abs]
- Denny, TN; Andrews, L; Bonsignori, M; Cavanaugh, K; Datto, MB; Deckard, A; DeMarco, CT; DeNaeyer, N; Epling, CA; Gurley, T; Haase, SB; Hallberg, C; Harer, J; Kneifel, CL; Lee, MJ; Louzao, R; Moody, MA; Moore, Z; Polage, CR; Puglin, J; Spotts, PH; Vaughn, JA; Wolfe, CR, Implementation of a Pooled Surveillance Testing Program for Asymptomatic SARS-CoV-2 Infections on a College Campus - Duke University, Durham, North Carolina, August 2-October 11, 2020.,
Mmwr. Morbidity and Mortality Weekly Report, vol. 69 no. 46
(November, 2020),
pp. 1743-1747 [doi] [abs]
- Smith, LM; Motta, FC; Chopra, G; Moch, JK; Nerem, RR; Cummins, B; Roche, KE; Kelliher, CM; Leman, AR; Harer, J; Gedeon, T; Waters, NC; Haase, SB, An intrinsic oscillator drives the blood stage cycle of the malaria parasite Plasmodium falciparum.,
Science (New York, N.Y.), vol. 368 no. 6492
(May, 2020),
pp. 754-759 [doi] [abs]
|