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Publications of John Harer    :chronological  alphabetical  combined  bibtex listing:

Books

  1. Edelsbrunner, H; Harer, J, Computational Topology - an Introduction. (2010), American Mathematical Society, ISBN 978-0-8218-4925-5 (http://www.ams.org/bookstore-getitem/item=mbk-69.)  [abs]
  2. Penner, R. C. and Harer, J. L., Combinatorics of train tracks, pp. xii+216, 1992, Princeton University Press, Princeton, NJ [MR94b:57018]

Papers Published

  1. Motta, FC; McGoff, K; Moseley, RC; Cho, C-Y; Kelliher, CM; Smith, LM; Ortiz, MS; Leman, AR; Campione, SA; Devos, N; Chaorattanakawee, S; Uthaimongkol, N; Kuntawunginn, W; Thongpiam, C; Thamnurak, C; Arsanok, M; Wojnarski, M; Vanchayangkul, P; Boonyalai, N; Smith, PL; Spring, MD; Jongsakul, K; Chuang, I; Harer, J; Haase, SB, The parasite intraerythrocytic cycle and human circadian cycle are coupled during malaria infection., Proceedings of the National Academy of Sciences of the United States of America, vol. 120 no. 24 (June, 2023), pp. e2216522120 [doi]  [abs]
  2. Motta, FC; McGoff, KA; Deckard, A; Wolfe, CR; Bonsignori, M; Moody, MA; Cavanaugh, K; Denny, TN; Harer, J; Haase, SB, Assessment of Simulated Surveillance Testing and Quarantine in a SARS-CoV-2-Vaccinated Population of Students on a University Campus., Jama Health Forum, vol. 2 no. 10 (October, 2021), pp. e213035 [doi]  [abs]
  3. Smith, AD; Bendich, P; Harer, J, PERSISTENT OBSTRUCTION THEORY FOR A MODEL CATEGORY OF MEASURES WITH APPLICATIONS TO DATA MERGING, Transactions of the American Mathematical Society, Series B, vol. 8 no. 1 (February, 2021), pp. 1-38 [doi]  [abs]
  4. Denny, TN; Andrews, L; Bonsignori, M; Cavanaugh, K; Datto, MB; Deckard, A; DeMarco, CT; DeNaeyer, N; Epling, CA; Gurley, T; Haase, SB; Hallberg, C; Harer, J; Kneifel, CL; Lee, MJ; Louzao, R; Moody, MA; Moore, Z; Polage, CR; Puglin, J; Spotts, PH; Vaughn, JA; Wolfe, CR, Implementation of a Pooled Surveillance Testing Program for Asymptomatic SARS-CoV-2 Infections on a College Campus - Duke University, Durham, North Carolina, August 2-October 11, 2020., Mmwr. Morbidity and Mortality Weekly Report, vol. 69 no. 46 (November, 2020), pp. 1743-1747 [doi]  [abs]
  5. Smith, LM; Motta, FC; Chopra, G; Moch, JK; Nerem, RR; Cummins, B; Roche, KE; Kelliher, CM; Leman, AR; Harer, J; Gedeon, T; Waters, NC; Haase, SB, An intrinsic oscillator drives the blood stage cycle of the malaria parasite Plasmodium falciparum., Science (New York, N.Y.), vol. 368 no. 6492 (May, 2020), pp. 754-759 [doi]  [abs]
  6. Tralie, CJ; Bendich, P; Harer, J, Multi-Scale Geometric Summaries for Similarity-Based Sensor Fusion, Ieee Aerospace Conference Proceedings, vol. 2019-March (March, 2019), ISBN 9781538668542 [doi]  [abs]
  7. Garagić, D; Peskoe, J; Liu, F; Claffey, MS; Bendich, P; Hineman, J; Borggren, N; Harer, J; Zulch, P; Rhodes, BJ, Upstream fusion of multiple sensing modalities using machine learning and topological analysis: An initial exploration, Ieee Aerospace Conference Proceedings, vol. 2018-March (June, 2018), pp. 1-8, IEEE, ISBN 9781538620144 [doi]  [abs]
  8. Tralie, CJ; Smith, A; Borggren, N; Hineman, J; Bendich, P; Zulch, P; Harer, J, Geometric Cross-Modal Comparison of Heterogeneous Sensor Data, Proceedings of the 39th IEEE Aerospace Conference, vol. 2018-March (March, 2018), pp. 1-10, IEEE, ISBN 9781538620144 [doi]  [abs]
  9. Bendich, P; Gasparovic, E; Harer, J; Tralie, CJ, Scaffoldings and Spines: Organizing High-Dimensional Data Using Cover Trees, Local Principal Component Analysis, and Persistent Homology, vol. 13 (January, 2018), pp. 93-114 [doi]  [abs]
  10. Hughes, ME; Abruzzi, KC; Allada, R; Anafi, R; Arpat, AB; Asher, G; Baldi, P; de Bekker, C; Bell-Pedersen, D; Blau, J; Brown, S; Ceriani, MF; Chen, Z; Chiu, JC; Cox, J; Crowell, AM; DeBruyne, JP; Dijk, D-J; DiTacchio, L; Doyle, FJ; Duffield, GE; Dunlap, JC; Eckel-Mahan, K; Esser, KA; FitzGerald, GA; Forger, DB; Francey, LJ; Fu, Y-H; Gachon, F; Gatfield, D; de Goede, P; Golden, SS; Green, C; Harer, J; Harmer, S; Haspel, J; Hastings, MH; Herzel, H; Herzog, ED; Hoffmann, C; Hong, C; Hughey, JJ; Hurley, JM; de la Iglesia, HO; Johnson, C; Kay, SA; Koike, N; Kornacker, K; Kramer, A; Lamia, K; Leise, T; Lewis, SA; Li, J; Li, X; Liu, AC; Loros, JJ; Martino, TA; Menet, JS; Merrow, M; Millar, AJ; Mockler, T; Naef, F; Nagoshi, E; Nitabach, MN; Olmedo, M; Nusinow, DA; Ptáček, LJ; Rand, D; Reddy, AB; Robles, MS; Roenneberg, T; Rosbash, M; Ruben, MD; Rund, SSC; Sancar, A; Sassone-Corsi, P; Sehgal, A; Sherrill-Mix, S; Skene, DJ; Storch, K-F; Takahashi, JS; Ueda, HR; Wang, H; Weitz, C; Westermark, PO; Wijnen, H; Xu, Y; Wu, G; Yoo, S-H; Young, M; Zhang, EE; Zielinski, T; Hogenesch, JB, Guidelines for Genome-Scale Analysis of Biological Rhythms., Journal of Biological Rhythms, vol. 32 no. 5 (October, 2017), pp. 380-393 [doi]  [abs]
  11. Bendich, P; Chin, SP; Clark, J; DeSena, J; Harer, J; Munch, E; Newman, A; Porter, D; Rouse, D; Strawn, N; Watkins, A, Topological and statistical behavior classifiers for tracking applications, Ieee Transactions on Aerospace and Electronic Systems, vol. 52 no. 6 (December, 2016), pp. 2644-2661, Institute of Electrical and Electronics Engineers (IEEE) [doi]  [abs]
  12. McGoff, KA; Guo, X; Deckard, A; Kelliher, CM; Leman, AR; Francey, LJ; Hogenesch, JB; Haase, SB; Harer, JL, The Local Edge Machine: inference of dynamic models of gene regulation., Genome Biology, vol. 17 no. 1 (October, 2016), pp. 214 [doi]  [abs]
  13. Bendich, P; Gasparovic, E; Harer, J; Tralie, C, Geometric Models for Musical Audio Data, Proceedings of the 32st International Symposium on Computational Geometry (SOCG) (June, 2016)
  14. Bendich, P; Gasparovic, E; Harer, J; Tralie, C, Geometric models for musical audio data, Leibniz International Proceedings in Informatics, Lipics, vol. 51 (June, 2016), pp. 65.1-65.5, ISBN 9783959770095 [doi]  [abs]
  15. Bendich, P; Gasparovic, E; Harer, J; Izmailov, R; Ness, L, Multi-scale local shape analysis and feature selection in machine learning applications, Proceedings of the International Joint Conference on Neural Networks, vol. 2015-September (September, 2015), IEEE, ISBN 9781479919604 [doi]  [abs]
  16. Perea, JA; Deckard, A; Haase, SB; Harer, J, SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity in gene expression time series data., Bmc Bioinformatics, vol. 16 (August, 2015), pp. 257 [doi]  [abs]
  17. Perea, JA; Harer, J, Sliding Windows and Persistence: An Application of Topological Methods to Signal Analysis, Foundations of Computational Mathematics, vol. 15 no. 3 (June, 2015), pp. 799-838, Springer Nature [1307.6188v2], [doi]  [abs]
  18. Munch, E; Turner, K; Bendich, P; Mukherjee, S; Mattingly, J; Harer, J, Probabilistic Fréchet means for time varying persistence diagrams, Electronic Journal of Statistics, vol. 9 no. 1 (January, 2015), pp. 1173-1204, Institute of Mathematical Statistics [1307.6530v3], [doi]  [abs]
  19. Rouse, D; Watkins, A; Porter, D; Harer, J; Bendich, P; Strawn, N; Munch, E; Desena, J; Clarke, J; Gilbert, J; Chin, S; Newman, A, Feature-aided multiple hypothesis tracking using topological and statistical behavior classifiers, Smart Structures and Materials 2005: Active Materials: Behavior and Mechanics, vol. 9474 (January, 2015), SPIE, ISSN 10.1117/12.2179555, ISBN 9781628415902 [doi]  [abs]
  20. Farr, RS; Harer, JL; Fink, TMA, Easily repairable networks: reconnecting nodes after damage., Physical Review Letters, vol. 113 no. 13 (September, 2014), pp. 138701, ISSN 0031-9007 [doi]  [abs]
  21. Bristow, SL; Leman, AR; Simmons Kovacs, LA; Deckard, A; Harer, J; Haase, SB, Checkpoints couple transcription network oscillator dynamics to cell-cycle progression., Genome Biology, vol. 15 no. 9 (September, 2014), pp. 446 [doi]  [abs]
  22. Turner, K; Mileyko, Y; Mukherjee, S; Harer, J, Fréchet Means for Distributions of Persistence Diagrams, Discrete & Computational Geometry, vol. 52 no. 1 (January, 2014), pp. 44-70, Springer Nature, ISSN 0179-5376 [arXiv:1206.2790], [doi]  [abs]
  23. Elizabeth Munch, Paul Bendich, Katharine Turner, Sayan Mukherjee, Jonathan Mattingly, John Harer, Probabilistic Fréchet Means and Statistics on Vineyards (2014) (http://arxiv.org/abs/1307.6530.)  [abs]
  24. Turner, K; Mileyko, Y; Mukherjee, S; Harer, J, Fréchet Means for Distributions of Persistence Diagrams, Discrete & Computational Geometry (2014) [1206.2790v2]  [abs]
  25. Topp, CN; Iyer-Pascuzzi, AS; Anderson, JT; Lee, C-R; Zurek, PR; Symonova, O; Zheng, Y; Bucksch, A; Mileyko, Y; Galkovskyi, T; Moore, BT; Harer, J; Edelsbrunner, H; Mitchell-Olds, T; Weitz, JS; Benfey, PN, 3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture., Proceedings of the National Academy of Sciences of the United States of America, vol. 110 no. 18 (April, 2013), pp. E1695-E1704 [23580618], [doi]  [abs]
  26. Christopher N Topp, Anjali S Iyer-Pascuzzi, Jill T Anderson, Cheng-Ruei Lee, Paul R Zurek, Olga Symonova, Ying Zheng, Alexander Bucksch, Yuriy Milyeko, Taras Galkovskyi, Brad Moore, John Harer, Herbert Edelsbrunner, Thomas Mitchell Olds, Joshua S Weitz, Philip N Benfey, 3-dimensional phenotyping of growing root systems combined with QTL mapping identifies core regions of the rice genome controlling root architecture, PNAS (2013) (http://www.pnas.org/content/early/2013/04/10/1304354110.abstract.)  [abs]
  27. Topp, ; CN, ; Iyer-Pascuzzi, AS; Anderson, JT; Lee, C-R; Zurek, PR; Symonova, O; Zheng, Y; Bucksch, A; Milyeko, Y; Galkovskyi, T; Moore, BT; Harer, J; Edelsbrunner, H; Mitchell-Olds, T; Weitz, JS; Benfey, PN, 3-dimensional phenotyping of growing root systems and QTL mapping identifies core regions of the rice genome controlling root architecture, PNAS, vol. 110 (2013), pp. E1695-1704
  28. Munch, E; Shapiro, M; Harer, J, Failure filtrations for fenced sensor networks, International Journal of Robotics Research, vol. 31 no. 9 (August, 2012), pp. 1044-1056, SAGE Publications [1109.6535v1], [doi]  [abs]
  29. Galkovskyi, T; Mileyko, Y; Bucksch, A; Moore, B; Symonova, O; Price, CA; Topp, CN; Iyer-Pascuzzi, AS; Zurek, PR; Fang, S; Harer, J; Benfey, PN; Weitz, JS, GiA Roots: software for the high throughput analysis of plant root system architecture., Bmc Plant Biology, vol. 12 no. 116 (July, 2012), pp. 116 [22834569], [doi]  [abs]
  30. Bendich, P; Harer, J; Harer, J, Persistent Homology Enhanced Dimension Reduction, Foundations of Computational Mathematics (2012)
  31. Michael Jenista,, Realizing Boolean Dynamics in Switching Networks, Siam Journal of Applied Dynamical Systems (2012), pp. 12  [abs]
  32. Deckard, A; Anafi, RC; Hogenesch, JB; Haase, SB; Harer, J, Design and Analysis of Large-Scale Biological Rhythm Studies: A Comparison of Algorithms for Detecting Periodic Signals in Biological Data, PLOS Computational Biology, vol. 29 no. 24 (2012), pp. 3174-3180 [doi]  [abs]
  33. Bendich, P; Galkovskyi, T; Harer, J, Improving homology estimates with random walks, Inverse Problems, vol. 27 no. 12 (December, 2011), pp. 124002-124002, IOP Publishing, ISSN 0266-5611 [doi]  [abs]
  34. Mileyko, Y; Mukherjee, S; Harer, J, Probability measures on the space of persistence diagrams, Inverse Problems, vol. 27 no. 12 (December, 2011), pp. 124007-124007, IOP Publishing, ISSN 0266-5611 [doi]  [abs] [author's comments]
  35. Bendich, P; Harer, J, Persistent Intersection Homology, Foundations of Computational Mathematics, vol. 11 no. 3 (June, 2011), pp. 305-336, Springer Nature, ISSN 1615-3375 [doi]  [abs]
  36. Anjali S. Iyer-Pascuzzi, Christopher N. Topp, Jill T. Anderson, Cheng-Ruei Lee, Olga Symonova, Yuriy Mileyko, Taras Galkovsky, Ying Zheng, Randy Clark, Leon Kochian, Herbert Edelsbrunner, Joshua S. Weitz, Thomas Mitchell-Olds, John Harer and Philip N. Benfey, Quantitative Genetic Analysis of Root System Architecture in Rice Plant and Animal Genomes, XX Genome Conference (2011)
  37. Bini, G; Harer, J, Euler characteristics of moduli spaces of curves, Journal of the European Mathematical Society, vol. 13 no. 2 (December, 2010), pp. 487-512, European Mathematical Society - EMS - Publishing House GmbH [doi]
  38. Cohen-Steiner, D; Edelsbrunner, H; Harer, J; Mileyko, Y, Lipschitz functions have Lp-stable persistence, Foundations of Computational Mathematics, vol. 10 no. 2 (April, 2010), pp. 127-139, Springer Nature, ISSN 1615-3375 [available here], [doi]  [abs]
  39. Iyer-Pascuzzi, AS; Symonova, O; Mileyko, Y; Hao, Y; Belcher, H; Harer, J; Weitz, JS; Benfey, PN, Imaging and analysis platform for automatic phenotyping and trait ranking of plant root systems., Plant Physiology, vol. 152 no. 3 (March, 2010), pp. 1148-1157 [20107024], [doi]  [abs]
  40. Edelsbrunner, H; Harer, J, The persistent Morse complex segmentation of a 3-manifold, in 3D Physiological Human Workshop, 2009, Lecture Notes Comp. Sci., edited by N. Magnenat-Thalmann, Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 5903 LNCS (December, 2009), pp. 36-50, Springer Berlin Heidelberg, ISSN 0302-9743 [doi]  [abs]
  41. Cohen-Steiner, D; Edelsbrunner, H; Harer, J, Extending persistence using poincaré and lefschetz duality (Foundations of Computational Mathematics DOI 10.1007/s10208-008-9027-z), Foundations of Computational Mathematics, vol. 9 no. 1 (February, 2009), pp. 133-134, Springer Nature, ISSN 1615-3375 [doi]
  42. Cohen-Steiner, D; Edelsbrunner, H; Harer, J; Morozov, D, Persistent homology for kernels, images, and cokernels, Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms (January, 2009), pp. 1011-1020 [available here], [doi]  [abs]
  43. Cohen-Steiner, D; Edelsbrunner, H; Harer, J, Extending persistence using poincaré and lefschetz duality, Foundations of Computational Mathematics, vol. 9 no. 1 (January, 2009), pp. 79-103, Springer Nature, ISSN 1615-3375 [doi]  [abs]
  44. Fink, T; Ahnert, S; Bar On, R; Harer, J, Exact dynamics of Boolean networks with connectivity one, PRL (2009)  [abs]
  45. Edelsbrunner, H; Harer, J; Patel, AK, Reeb spaces of piecewise linear mappings, Proceedings of the Annual Symposium on Computational Geometry (December, 2008), pp. 242-250, ACM Press [doi]  [abs]
  46. Edelsbrunner, H; Harer, J; Mascarenhas, A; Pascucci, V; Snoeyink, J, Time-varying Reeb graphs for continuous space-time data, Computational Geometry, vol. 41 no. 3 (November, 2008), pp. 149-166, Elsevier BV, ISSN 0925-7721 [doi]  [abs]
  47. Edelsbrunner, H; Harer, J, Persistent homology - a survey, edited by Goodman, JE; Pach, J; Pollack, R, Surveys on Discrete and Computational Geometry: Twenty Years Later, vol. 453 (January, 2008), pp. 257-+, AMER MATHEMATICAL SOC, ISBN 978-0-8218-4239-3 [pdf]  [abs]
  48. Bendice, P; Cohen-Steiner, D; Edelsbrunner, H; Harer, J; Morozov, D, Inferring local homology from sampled stratified spaces, Annual Symposium on Foundations of Computer Science (Proceedings) (December, 2007), pp. 536-546, IEEE, ISSN 0272-5428 [available here], [doi]  [abs]
  49. Czumaj, A; Sohler, C, Testing Expansion in Bounded-Degree Graphs, 48th Annual IEEE Symposium on Foundations of Computer Science (FOCS'07) (October, 2007), pp. 536-546, IEEE, ISBN 9780769530109 [doi]
  50. Bendich, P; Cohen-Steiner, D; Edelsbrunner, H; Harer, J; Morozov, D, Inferring Local Homology from Sampled Stratified Spaces, 48th Annual IEEE Symposium on Foundations of Computer Science (FOCS'07) (October, 2007), pp. 536-546, IEEE, ISBN 9780769530109 [doi]
  51. Attali, D; Edelsbrunner, H; Harer, J; Mileyko, Y, Alpha-beta witness complexes, Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 4619 LNCS (January, 2007), pp. 386-397, ISSN 0302-9743 [doi]  [abs]
  52. Cohen-Steiner, D; Edelsbrunner, H; Harer, J, Stability of persistence diagrams, Discrete & Computational Geometry, vol. 37 no. 1 (January, 2007), pp. 103-120, Springer Nature, ISSN 0179-5376 [doi]  [abs] [author's comments]
  53. Agarwal, PK; Edelsbrunner, H; Harer, J; Wang, Y, Extreme elevation on a 2-manifold, Discrete & Computational Geometry, vol. 36 no. 4 (January, 2006), pp. 553-572, Springer Nature, ISSN 0179-5376 [doi]  [abs]
  54. Cohen-Steiner, D; Edelsbrunner, H; Harer, J, Stability of persistence diagrams, Proceedings of the Annual Symposium on Computational Geometry (December, 2005), pp. 263-271, ACM Press [doi]  [abs]
  55. with Edelsbrunner, H; Harer, J; Natarajan, V; Pascucci, V, Local and global comparison of continuous functions, IEEE Visualization 2004 - Proceedings, VIS 2004 (December, 2004), pp. 275-280, IEEE Comput. Soc [doi]  [abs]
  56. with Edelsbrunner, H; Harer, J; Mascarenhas, A; Pascucci, V, Time-varying Reeb graphs for continuous space-time data, Proceedings of the Annual Symposium on Computational Geometry (January, 2004), pp. 366-372 [doi]  [abs]
  57. with Agarwal, PK; Edelsbrunner, H; Harer, J; Wang, Y, Extreme elevation on a 2-manifold, Proceedings of the Annual Symposium on Computational Geometry (January, 2004), pp. 357-365 [doi]  [abs]
  58. with Cole-McLaughlin, K; Edelsbrunner, H; Harer, J; Natarajan, V; Pascucci, V, Loops in Reeb graphs of 2-manifolds, Discrete & Computational Geometry, vol. 32 no. 2 (January, 2004), pp. 231-244, Springer Nature [doi]  [abs]
  59. with Collins, AD; Agarwal, PK; Harer, JL, HPRM: A hierarchical PRM, Proceedings Ieee International Conference on Robotics and Automation, vol. 3 (December, 2003), pp. 4433-4438  [abs]
  60. with Edelsbrunner, H; Harer, J; Natarajan, V; Pascucci, V, Morse-Smale complexes for piecewise linear 3-manifolds, Proceedings of the Annual Symposium on Computational Geometry (January, 2003), pp. 361-370 [doi]  [abs]
  61. Edelsbrunner, H; Harer, J; Zomorodian, A, Hierarchical Morse-Smale complexes for piecewise linear 2-manifolds, Discrete & Computational Geometry, vol. 30 no. 1 (January, 2003), pp. 87-107, Springer Nature, ISSN 0179-5376 [doi]  [abs]
  62. Cole-McLaughlin, K; Edelsbrunner, H; Harer, J; Natarajan, V; Pascucci, V, Loops in Reeb graphs of 2-manifolds, Proceedings of the Annual Symposium on Computational Geometry (January, 2003), pp. 344-350 [doi]  [abs]
  63. with H. Edelsbrunner., Jacobi sets of multiple Morse functions., Foundations of Computational Mathematics, Minneapolis, eds. F. Cucker, R. DeVore, P. Olver and E. Sueli, Cambridge Univ. Press, England, (2002), pp. 37-57  [abs]
  64. Goulden, IP; Harer, JL; Jackson, DM, A geometric parametrization for the virtual euler characteristics of the moduli spaces of real and complex algebraic curves, Transactions of the American Mathematical Society, vol. 353 no. 11 (January, 2001), pp. 4405-4427, ISSN 0002-9947 [MR1851176], [doi]  [abs]
  65. Edelsbrunner, H; Harer, J; Zomorodian, A, Hierarchical Morse complexes for piecewise linear 2-manifolds, Proceedings of the Annual Symposium on Computational Geometry (January, 2001), pp. 70-79 [doi]  [abs]
  66. Agarwal, PK; Collins, AD; Harer, JL, Minimal trap design, Proceedings Ieee International Conference on Robotics and Automation, vol. 3 (January, 2001), pp. 2243-2248, IEEE [doi]  [abs]
  67. Bern, M; Eppstein, D; Agarwal, PK; Amenta, N; Chew, P; Dey, T; Dobkin, DP; Edelsbrunner, H; Grimm, C; Guibas, LJ; Harer, J; Hass, J; Hicks, A; Johnson, CK; Lerman, G; Letscher, D; Plassmann, P; Sedgwick, E; Snoeyink, J; Weeks, J; Yap, C; Zorin, D, Emerging Challenges in Computational Topology, vol. cs.CG/9909001 (September, 1999)  [abs]
  68. Harer, J, The third homology group of the moduli space of curves, Duke Mathematical Journal, vol. 63 no. 1 (January, 1991), pp. 25-55, Duke University Press [doi]
  69. Harer, JL, Stability of the homology of the moduli spaces of Riemann surfaces with spin structure, Mathematische Annalen, vol. 287 no. 1 (March, 1990), pp. 323-334, Springer Nature, ISSN 0025-5831 [MR91e:57002], [doi]
  70. Harer, J; Zagier, D, The Euler characteristic of the moduli space of curves, Inventiones Mathematicae, vol. 85 no. 3 (October, 1986), pp. 457-485, ISSN 1435-9855 [doi]  [abs]
  71. Harer, JL, The virtual cohomological dimension of the mapping class group of an orientable surface, Inventiones Mathematicae, vol. 84 no. 1 (February, 1986), pp. 157-176, Springer Nature, ISSN 0020-9910 [MR87c:32030], [doi]
  72. HARER, J; KAS, A; KIRBY, R, HANDLEBODY STRUCTURES FOR COMPLEX-SURFACES, Memoirs of the American Mathematical Society, vol. 62 no. 350 (1986), pp. 1-102
  73. Harer, J, The second homology group of the mapping class group of an orientable surface, Inventiones Mathematicae, vol. 72 no. 2 (June, 1983), pp. 221-239, Springer Nature, ISSN 0020-9910 [MR84g:57006], [doi]
  74. Harer, J, How to construct all fibered knots and links, Topology, vol. 21 no. 3 (January, 1982), pp. 263-280, Elsevier BV, ISSN 0040-9383 [MR83e:57007], [doi]
  75. Harer, J, On Almost-Everywhere Convergent Eigenfunction Expansions of the Laplace-Beltrami Operator, Mathematical Proceedings of the Cambridge Philosophical Society, vol. 92 no. 1 (January, 1982), pp. 133-138, Cambridge University Press (CUP) [doi]  [abs]
  76. Casson, AJ; Harer, JL, Some homology lens spaces which bound rational homology balls, Pacific Journal of Mathematics, vol. 96 no. 1 (January, 1981), pp. 23-36, Mathematical Sciences Publishers [MR83h:57013], [doi]  [abs]
  77. Harer, J, On handlebody structures for hypersurfaces in ℂ3 and ℂP3, Mathematische Annalen, vol. 238 no. 1 (February, 1978), pp. 51-58, Springer Nature, ISSN 0025-5831 [MR80d:57020], [doi]
  78. Harer, John L., The rational Picard group of the moduli space of Riemann surfaces with spin structure, Mapping class groups and moduli spaces of Riemann surfaces (Gottingen, 1991/Seattle, WA, 1991), pp. 107--136, 1993, Amer. Math. Soc., Providence, RI [MR94h:14008]
  79. Harer, John, The third homology group of the moduli space of curves, Duke Math. J., vol. 63, no. 1, pp. 25--55, 1991 [MR92d:57012]
  80. Harer, John L., The cohomology of the moduli space of curves, Theory of moduli (Montecatini Terme, 1985), pp. 138--221, 1988, Springer, Berlin [MR90a:32026]
  81. Harer, John and Kas, Arnold and Kirby, Robion, Handlebody decompositions of complex surfaces, Mem. Amer. Math. Soc., vol. 62, no. 350, pp. iv+102, 1986 [MR88e:57030]
  82. Harer, John L., Stability of the homology of the mapping class groups of orientable surfaces, Ann. of Math. (2), vol. 121, no. 2, pp. 215--249, 1985 [MR87f:57009]
  83. Geometry and topology, Proceedings of the special year held at the University of Maryland, College Park, Md., 1983/84, edited by Alexander, J. and Harer, J., pp. vi+292, 1985, Springer-Verlag, Berlin [MR87a:57003]
  84. Harer, John, The homology of the mapping class group and its connection to surface bundles over surfaces, Four-manifold theory (Durham, N.H., 1982), pp. 311--314, 1984, Amer. Math. Soc., Providence, RI [MR86c:57010]
  85. Harer, John, Representing elements of pi1(M3) by fibred knots, Math. Proc. Cambridge Philos. Soc., vol. 92, no. 1, pp. 133--138, 1982 [MR83j:57005]

Papers Accepted

  1. E. Munch, P. Bendich, K. Turner, S. Mukherjee, J. Mattingly and J. Harer, Probabilistic Frechet Means and Statistics on Vineyards, Foundations of Computational Math (2014)  [abs]

Papers Submitted

  1. J. Perea, A. Deckard, S. Haase and J. Harer, Sliding Windows and 1-Persistence Scoring; Discovering Periodicity in Gene Expression Time Series Data, BMC Bioinformatics (2014)  [abs]
  2. K.A. McGoff, X. Guo, A. Deckard, A.R. Leman, C.M. Kelliher, S.B. Haase, and J.L. Harer, The Local Edge Machine: Inference of dynamic models of gene regulation, Nature Methods (2014)  [abs]
  3. P. Bendich, S. Chin, J. Clarke, J. deSena, J. Harer, E. Munch, A. Newman, D. Porter, D. Rouse, N. Strawn, and A. Watkins, Topological and Statistical Behavior Classifiers for Tracking Applications, IEEE Trans. on Aerospace and Electronic Systems (2014)  [abs]
  4. P. Bendich, Jacob Harer and John Harer, A Persistent Homology Based Geodesic Distance Estimator, Journal of Machine Learning Research (2014)  [author's comments]
  5. J. Perea, A. Deckard, S. Haase and J. Harer, Applications of SWiPerS to the discovery of periodic genes (2013)
  6. Sara Bristow, Laura A. Simmons Kovacs, Anastasia Deckard, John Harer, Steven B. Haase, Checkpoint Pathways Couple the CDK-Independent Transcriptional Oscillations to Cell Cycle Progression (2013)  [abs]
  7. P. Bendich and J. Harer, Elevation for singular spaces using persistent intersection homology (2009)
  8. Mehak Aziz, Siobhan M. Brady, David Orlando, Appu Kuruvilla, Scott Spillias, José R. Dinneny, Terri A. Long, John Harer, Uwe Ohler, Philip N. Benfey, Gene Expression Clustering Analysis: How to Choose the Best Parameters and Clustering Algorithm (2008)  [abs]

Preprints

  1. John Harer, Algorithms for Enumerating Triangulations and Other Maps in Surfaces, 1998 , preprint 1998
  2. John Harer, An Alternative Approach to Trap Design for Vibratory Bowl Feeders, 1998 , preprint 1998
  3. John Harer, The Euler Characteristic of the Deligne-Mumford Compactification of the Moduli Space of Curves, 1996 , preprint 1996

Other

  1. with H. Edelsbrunner, Persistent Morse Complex Segmentation of a 3-Manifold, Raindrop Geomagic Technical Report, vol. 066 (2004)  [abs] [author's comments]

 

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Mathematics Department
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