Publications of Philip N Benfey     :chronological  combined  bibtex listing:

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Books

  1. P.N. Benfey and A. D. Protopapas, Genomics (2004), Prentice Hall .
  2. P.N. Benfey and A. D. Protopapas, Essentials of Genomics (2004), Prentice Hall .

Papers Published

  1. SM Brady, DA Orlando, JY Lee, JY Wang, J Koch, JR Dinneny, D Mace, U Ohler, PN Benfey, A high-resolution root spatiotemporal map reveals dominant expression patterns., Science (New York, N.Y.), United States, vol. 318 no. 5851 (November, 2007), pp. 801-6  [abs].
  2. H Cui, MP Levesque, T Vernoux, JW Jung, AJ Paquette, KL Gallagher, JY Wang, I Blilou, B Scheres, PN Benfey, An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants., Science (New York, N.Y.), United States, vol. 316 no. 5823 (April, 2007), pp. 421-5  [abs].
  3. JS Weitz, PN Benfey, NS Wingreen, Evolution, interactions, and biological networks., PLoS biology, United States, vol. 5 no. 1 (January, 2007), pp. e11 .
  4. SM Brady, S Song, KS Dhugga, JA Rafalski, PN Benfey, Combining expression and comparative evolutionary analysis. The COBRA gene family., Plant physiology, United States, vol. 143 no. 1 (January, 2007), pp. 172-87  [abs].
  5. TA Long, PN Benfey, Transcription factors and hormones: new insights into plant cell differentiation., Curr Opin Cell Biol, United States, vol. 18 no. 6 (December, 2006), pp. 710-4 (ISSN: HASH(0xba1eac8).)  [abs].
  6. SM Brady, TA Long, PN Benfey, Unraveling the dynamic transcriptome., Plant Cell, United States, vol. 18 no. 9 (September, 2006), pp. 2101-11 (ISSN: HASH(0xc8fb798).) .
  7. DL Mace, JY Lee, RW Twigg, J Colinas, PN Benfey, U Ohler, Quantification of transcription factor expression from Arabidopsis images., Bioinformatics, England, vol. 22 no. 14 (July, 2006), pp. e323-31 (ISSN: HASH(0xbff91c0).)  [abs].
  8. MP Levesque, T Vernoux, W Busch, H Cui, JY Wang, I Blilou, H Hassan, K Nakajima, N Matsumoto, JU Lohmann, B Scheres, PN Benfey, Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis., PLoS Biol, United States, vol. 4 no. 5 (May, 2006), pp. e143 (ISSN: HASH(0xd0864d4).)  [abs].
  9. JY Lee, J Colinas, JY Wang, D Mace, U Ohler, PN Benfey, Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots., Proc Natl Acad Sci U S A, United States, vol. 103 no. 15 (April, 2006), pp. 6055-60 (ISSN: HASH(0xc0db758).)  [abs].
  10. J Friml, P Benfey, E Benková, M Bennett, T Berleth, N Geldner, M Grebe, M Heisler, J Hejátko, G Jürgens, T Laux, K Lindsey, W Lukowitz, C Luschnig, R Offringa, B Scheres, R Swarup, R Torres-Ruiz, D Weijers, E Zazímalová, Apical-basal polarity: why plant cells don't stand on their heads., Trends Plant Sci, England, vol. 11 no. 1 (December, 2005), pp. 12-4 .
  11. JR Dinneny, PN Benfey, Stem Cell Research Goes Underground: The RETINOBLASTOMA-RELATED Gene in Root Development., Cell, vol. 123 no. 7 (December, 2005), pp. 1180-2 (ISSN: HASH(0x9fb5ba8).)  [abs].
  12. J Lim, JW Jung, CE Lim, MH Lee, BJ Kim, M Kim, WB Bruce, PN Benfey, Conservation and diversification of SCARECROW in maize., Plant Mol Biol, Netherlands, vol. 59 no. 4 (November, 2005), pp. 619-30 (ISSN: HASH(0xabdec88).)  [abs].
  13. K Birnbaum, JW Jung, JY Wang, GM Lambert, JA Hirst, DW Galbraith, PN Benfey, Cell type-specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines., Nat Methods, United States, vol. 2 no. 8 (August, 2005), pp. 615-9 (ISSN: HASH(0xbd9ee98).) .
  14. T Vernoux, PN Benfey, Signals that regulate stem cell activity during plant development., Curr Opin Genet Dev, England, vol. 15 no. 4 (August, 2005), pp. 388-94 (ISSN: HASH(0xbb7dafc).)  [abs].
  15. T Nawy, JY Lee, J Colinas, JY Wang, SC Thongrod, JE Malamy, K Birnbaum, PN Benfey, Transcriptional profile of the Arabidopsis root quiescent center., Plant Cell, United States, vol. 17 no. 7 (July, 2005), pp. 1908-25 (ISSN: HASH(0xbb8d460).)  [abs].
  16. AJ Paquette, PN Benfey, Maturation of the ground tissue of the root is regulated by gibberellin and SCARECROW and requires SHORT-ROOT., Plant Physiol, United States, vol. 138 no. 2 (June, 2005), pp. 636-40 (ISSN: HASH(0xbb8d9c8).) .
  17. JY Lee, M Levesque, PN Benfey, High-throughput RNA isolation technologies. New tools for high-resolution gene expression profiling in plant systems., Plant Physiol, United States, vol. 138 no. 2 (June, 2005), pp. 585-90 (ISSN: HASH(0xba63ecc).) .
  18. PN Benfey, Developmental networks., Plant Physiol, United States, vol. 138 no. 2 (June, 2005), pp. 548-9 (ISSN: HASH(0xb90b23c).) .
  19. F Roudier, AG Fernandez, M Fujita, R Himmelspach, GH Borner, G Schindelman, S Song, TI Baskin, P Dupree, GO Wasteneys, PN Benfey, COBRA, an Arabidopsis extracellular glycosyl-phosphatidyl inositol-anchored protein, specifically controls highly anisotropic expansion through its involvement in cellulose microfibril orientation., Plant Cell, United States, vol. 17 no. 6 (June, 2005), pp. 1749-63 (ISSN: HASH(0xc23db64).)  [abs].
  20. KL Gallagher, PN Benfey, Not just another hole in the wall: understanding intercellular protein trafficking., Genes Dev, United States, vol. 19 no. 2 (January, 2005), pp. 189-95 (ISSN: HASH(0xb7dca0c).)  [abs].
  21. Gallagher KL, Paquette AJ, Nakajima K, P.N. Benfey, Mechanisms regulating SHORT-ROOT intercellular movement, Current Biology, vol. 14 no. 20 (2004), pp. 1847-51  [abs].
  22. Birnbaum K, P.N. Benfey, Network building: transcriptional circuits in the root, Curr Opin Plant Biol., vol. 7 (2004), pp. 582-8 .
  23. Irish VF, P.N. Benfey, Beyond Arabidopsis. Translational biology meets evolutionary developmental biology, Plant Physiol., vol. 135 (2004), pp. 611-4 .
  24. Levesque MP, P.N. Benfey, Systems biology, Curr Biol., vol. 14 (2004), pp. R179-80 .
  25. P.N. Benfey, A common switch used by plants and animals, Cell, vol. 116 (2004), pp. 4-5 .
  26. Sena G, Jung JW,, P.N. Benfey, A broad competence to respond to SHORT ROOT revealed by tissue-specific ectopic expression, Development, vol. 131 (2004), pp. 2817-26 .
  27. P.N. Benfey, Development and ecology in the time of systems biology, Developmental Cell, vol. 7 (2004), pp. 329-30 .
  28. Birnbaum, K., Shasha, D.E., Wang, J.Y., Jung, J., Lambert, G.M., Galbraith, D.W. and P.N. Benfey, A gene expression map of the Arabidopsis root, Science, vol. 302 (December, 2003), pp. 1956-60 .
  29. Brenner ED, Stevenson DW, McCombie RW, Katari MS, Rudd SA, Mayer KF, Palenchar PM, Runko SJ, Twigg RW, Dai G, Martienssen RA, Benfey PN, Coruzzi GM, Expressed sequence tag analysis in Cycas, the most primitive living seed plant, Genome Biology, vol. 4 (2003), pp. R78 .
  30. P.N. Benfey, Molecular biology: microRNA is here to stay, Nature, vol. 425( (2003), pp. 244-245 (Prize for one of three best News and Views in 2003.) .
  31. Levesque M, Shasha D, Kim W, Surette MG and P.N. Benfey, Trait-to-gene: a computational method for predicting the function of uncharacterized genes, Current Biology, vol. 13 (2003), pp. 129-133 .
  32. Birnbaum, K., DeSalle, R., Peters, C.M. and P.N. Benfey, Integrating gene flow, crop biology, and farm management in the on-farm conservation of avocado (Persea americana, Lauraceae)., American Journal of Botany, vol. 90 (2003), pp. 1619-1627 .
  33. Roudier, F., Schindelman, G, DeSalle, R. and P.N. Benfey, The COBRA family of putative GPI-anchored proteins in Arabidopsis: a new fellowship in expansion., Plant Physiology, vol. 130 no. 2 (December, 2002), pp. 538-48. .
  34. Muller S, Fuchs E, Ovecka M, Wysocka-Diller J, Benfey P.N, and MT Hauser, Two new loci, PLEIADE and HYADE, implicate organ-specific regulation of cytokinesis in Arabidopsis., Plant Physiol., vol. 130 no. 1 (December, 2002), pp. 312-24 .
  35. Colinas J, Birnbaum K, and P.N. Benfey, Using cauliflower to find conserved non-coding regions in Arabidopsis., Plant Physiol., vol. 129 no. 2 (December, 2002), pp. 451-4 .
  36. P.N. Benfey, Auxin action: slogging out of the swamp, Curr Biol., vol. 12 no. 11 (December, 2002), pp. R389-90 .
  37. Nakajima, K and P.N. Benfey, Signaling in and out: control of cell division and differentiation in the shoot and root., Plant Cell, vol. 14 (December, 2002), pp. S265-76 .
  38. Birnbaum, K., Benfey, P.N., Peters, C.M., and R. DeSalle, MANAGEDPOP: a computer simulation to project allelic diversity in managed populations with overlapping generations, Molecular Ecology Notes, vol. 2 (January, 2002), pp. 615-617 .

Papers Accepted

  1. J.R. Dinneney and P.N. Benfey, A niche that stands the test of time: Plant models for stem cell function, Cell (2007) .

Papers Submitted

  1. J. R. Dinneny, J. Y. Wang, J. W. Jung, D. Mace, S. Pointer, C. Barron, S. M. Brady, J. Schiefelbein and P. N. Benfey, Cell Identity Mediates the Response of Arabidopsis Roots to High Salinity, Science (2007) .

Book Chapter

  1. Dinneny, J. and P.N. Benfey, Studying root development using a genomic approach, in Root Development (2006) .
  2. Lee, J-Y and P.N. Benfey, Root Apical Meristems, in Encyclopedia of Life Sciences (2006) .

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